Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057069.t1 | XP_003617426.1 | 90.5 | 550 | 51 | 1 | 1 | 549 | 1 | 550 | 1.70E-271 | 944.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057069.t1 | Q9FPT1 | 57.0 | 263 | 105 | 5 | 2 | 260 | 562 | 820 | 4.1e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057069.t1 | G7KD57 | 90.5 | 550 | 51 | 1 | 1 | 549 | 1 | 550 | 1.2e-271 | 944.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057069.t1 | MTR_5g091430 | 90.545 | 550 | 51 | 1 | 1 | 549 | 1 | 550 | 0.0 | 1000 |
| MS.gene057069.t1 | MTR_5g091450 | 62.479 | 605 | 165 | 7 | 4 | 549 | 191 | 792 | 0.0 | 686 |
| MS.gene057069.t1 | MTR_5g091180 | 63.619 | 525 | 163 | 7 | 2 | 522 | 202 | 702 | 0.0 | 583 |
| MS.gene057069.t1 | MTR_5g091410 | 59.165 | 551 | 192 | 6 | 1 | 549 | 30 | 549 | 0.0 | 578 |
| MS.gene057069.t1 | MTR_5g091530 | 60.069 | 288 | 91 | 3 | 4 | 289 | 119 | 384 | 1.01e-105 | 322 |
| MS.gene057069.t1 | MTR_5g091550 | 56.169 | 308 | 122 | 4 | 3 | 301 | 175 | 478 | 3.44e-103 | 319 |
| MS.gene057069.t1 | MTR_5g091550 | 56.169 | 308 | 122 | 4 | 3 | 301 | 180 | 483 | 4.59e-103 | 319 |
| MS.gene057069.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 1.42e-99 | 325 |
| MS.gene057069.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 1.42e-99 | 325 |
| MS.gene057069.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 564 | 822 | 1.89e-95 | 314 |
| MS.gene057069.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 563 | 821 | 2.08e-95 | 314 |
| MS.gene057069.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 566 | 824 | 1.00e-79 | 271 |
| MS.gene057069.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 565 | 823 | 1.02e-79 | 271 |
| MS.gene057069.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 564 | 822 | 1.07e-79 | 271 |
| MS.gene057069.t1 | MTR_5g091460 | 79.545 | 44 | 9 | 0 | 1 | 44 | 1 | 44 | 9.23e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057069.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 562 | 778 | 1.85e-79 | 269 |
| MS.gene057069.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 561 | 777 | 6.17e-79 | 269 |
| MS.gene057069.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 562 | 778 | 6.22e-79 | 269 |
| MS.gene057069.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 560 | 795 | 6.13e-78 | 266 |
| MS.gene057069.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 560 | 795 | 6.13e-78 | 266 |
| MS.gene057069.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 559 | 794 | 7.34e-78 | 266 |
| MS.gene057069.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 559 | 794 | 7.34e-78 | 266 |
Find 82 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAAGGTTAAATAAAT+TGG | 0.166835 | 5.3:-73437786 | MS.gene057069:CDS |
| TTCCAATGATTCTTCATCTT+TGG | 0.180925 | 5.3:+73436998 | None:intergenic |
| TCTTCAATGCTTCATTATTT+TGG | 0.190214 | 5.3:+73436448 | None:intergenic |
| TGACGAATTAAAATTGTTTC+TGG | 0.191505 | 5.3:-73438142 | MS.gene057069:CDS |
| CTTCCAAGAGCAACTTCTTA+TGG | 0.228201 | 5.3:-73436706 | MS.gene057069:CDS |
| TAGCTCAATTCCAGCGCTTT+TGG | 0.241563 | 5.3:-73438669 | MS.gene057069:CDS |
| CCACGAATGCAGTTAGAAAA+TGG | 0.246637 | 5.3:-73437273 | MS.gene057069:intron |
| AATGTTAATTCCTTCTTAAC+TGG | 0.258356 | 5.3:+73437383 | None:intergenic |
| ACAAGGCGACCGGGCTAAAA+TGG | 0.260074 | 5.3:-73436316 | MS.gene057069:CDS |
| GAGGCATTACCCTCATTATT+TGG | 0.263040 | 5.3:+73436136 | None:intergenic |
| TGATACCTTGAAAACGTTAA+AGG | 0.272288 | 5.3:+73439116 | None:intergenic |
| AGTAAGTACATTAATCAAAA+TGG | 0.294834 | 5.3:+73436114 | None:intergenic |
| GAAGATCTTGCAGAACAAAT+TGG | 0.323182 | 5.3:-73439207 | MS.gene057069:CDS |
| CCTGGAGGCACAAGCTGAAT+TGG | 0.323548 | 5.3:-73436178 | MS.gene057069:CDS |
| CTCTTATTGAATGGCGTAAT+GGG | 0.331630 | 5.3:+73438004 | None:intergenic |
| ATTAAAATTGTTTCTGGAAG+TGG | 0.348069 | 5.3:-73438136 | MS.gene057069:CDS |
| AACATGGTTGCTATAGAGTT+TGG | 0.361077 | 5.3:-73438697 | MS.gene057069:CDS |
| CCAATTCAGCTTGTGCCTCC+AGG | 0.383899 | 5.3:+73436178 | None:intergenic |
| ATGTGTGTCAAAGGCCGATA+TGG | 0.385971 | 5.3:+73438613 | None:intergenic |
| ACTGGCAAACGCATGACATT+TGG | 0.386148 | 5.3:+73437401 | None:intergenic |
| ATCCAAAGATGAAGAATCAT+TGG | 0.396304 | 5.3:-73437000 | MS.gene057069:CDS |
| CAAGAGAGTTGCGTTGTGTT+TGG | 0.402884 | 5.3:+73436379 | None:intergenic |
| AGAAGTTGCTCTTGGAAGTT+GGG | 0.405096 | 5.3:+73436711 | None:intergenic |
| TCACTTGTACACTATGATAA+AGG | 0.412677 | 5.3:-73439357 | MS.gene057069:intron |
| GGATAAGCCATCAGAAATCT+TGG | 0.414878 | 5.3:-73437804 | MS.gene057069:CDS |
| ATCTTTGGATTCTATATCTG+AGG | 0.416621 | 5.3:+73437013 | None:intergenic |
| AAAAGTTCAATCTCTTCATC+AGG | 0.421693 | 5.3:+73437752 | None:intergenic |
| CAACATTGACTTGTTCTAGT+TGG | 0.426520 | 5.3:+73436559 | None:intergenic |
| ACTGTGTTGAAACTAACTTT+AGG | 0.426782 | 5.3:+73436624 | None:intergenic |
| CCTCGTAAAGCTCTTTCAAT+TGG | 0.427504 | 5.3:+73438166 | None:intergenic |
| ATTCCATAAGAAGTTGCTCT+TGG | 0.436863 | 5.3:+73436703 | None:intergenic |
| AATGAAAGCTATTGATTGCC+AGG | 0.443087 | 5.3:-73437169 | MS.gene057069:intron |
| AGAATGAAGGCACATCAAAA+AGG | 0.443323 | 5.3:+73437196 | None:intergenic |
| AAGAAGTTGCTCTTGGAAGT+TGG | 0.443347 | 5.3:+73436710 | None:intergenic |
| TAATCATTGCTCTTATTGAA+TGG | 0.444221 | 5.3:+73437995 | None:intergenic |
| CCCTTTGGTGGCAGTTATGT+TGG | 0.447155 | 5.3:-73437848 | MS.gene057069:intron |
| GCTCTTATTGAATGGCGTAA+TGG | 0.454463 | 5.3:+73438003 | None:intergenic |
| CATGCGTTTGCCAGTTAAGA+AGG | 0.456247 | 5.3:-73437393 | MS.gene057069:CDS |
| AGCAACTTCTTATGGAATTG+AGG | 0.457005 | 5.3:-73436698 | MS.gene057069:CDS |
| GCAACTTCTTATGGAATTGA+GGG | 0.458233 | 5.3:-73436697 | MS.gene057069:CDS |
| GCAAGGTTAAATAAATTGGC+TGG | 0.470203 | 5.3:-73437782 | MS.gene057069:CDS |
| ATCTCAAAGACGTGCCTCAC+AGG | 0.488037 | 5.3:-73436405 | MS.gene057069:CDS |
| CATTACCCTCATTATTTGGT+AGG | 0.488902 | 5.3:+73436140 | None:intergenic |
| TTGGTGGCAGTTATGTTGGA+AGG | 0.494286 | 5.3:-73437844 | MS.gene057069:intron |
| GTTGGTACCTTTAGCATGAG+TGG | 0.497178 | 5.3:+73436893 | None:intergenic |
| TCTATATCTGAGGGCCGAAA+AGG | 0.497785 | 5.3:+73437023 | None:intergenic |
| GAGAGTTGCGTTGTGTTTGG+TGG | 0.498451 | 5.3:+73436382 | None:intergenic |
| GCCGATATGGTCGATATGTA+TGG | 0.503263 | 5.3:+73438626 | None:intergenic |
| AAGGCTTATTGTGAACTGTA+AGG | 0.503460 | 5.3:-73437825 | MS.gene057069:CDS |
| AAGCTTATGCTATTGATACT+AGG | 0.505022 | 5.3:-73437230 | MS.gene057069:CDS |
| AACCTTGCCAAGATTTCTGA+TGG | 0.506298 | 5.3:+73437797 | None:intergenic |
| TGAAGCTCAACAGTCAAAAG+TGG | 0.513365 | 5.3:-73436925 | MS.gene057069:CDS |
| ACCATACATATCGACCATAT+CGG | 0.517591 | 5.3:-73438627 | MS.gene057069:CDS |
| GCTTCCTCGATGTGTGTCAA+AGG | 0.520515 | 5.3:+73438604 | None:intergenic |
| TTTGATCATCAGCGAGGCGA+TGG | 0.524961 | 5.3:+73436229 | None:intergenic |
| AAAATATTATAGCTGAAGAA+AGG | 0.525519 | 5.3:-73436965 | MS.gene057069:CDS |
| AAATAATGAAGCATTGAAGA+AGG | 0.539170 | 5.3:-73436445 | MS.gene057069:CDS |
| AGAAGGCCTACCAAATAATG+AGG | 0.539514 | 5.3:-73436146 | MS.gene057069:CDS |
| AAGTGTTGAAGATAAAATCC+TGG | 0.540552 | 5.3:-73436196 | MS.gene057069:CDS |
| TCTTTGGATTCTATATCTGA+GGG | 0.540937 | 5.3:+73437014 | None:intergenic |
| AGTTAGTTTCAACACAGTCA+TGG | 0.546034 | 5.3:-73436619 | MS.gene057069:CDS |
| ATAGAGACCACTCATGCTAA+AGG | 0.550479 | 5.3:-73436900 | MS.gene057069:CDS |
| ATGATAGACGAGGATGTCAT+TGG | 0.551670 | 5.3:-73436819 | MS.gene057069:CDS |
| ATCGACAAAGTGTTATCAGA+AGG | 0.564630 | 5.3:-73436792 | MS.gene057069:CDS |
| ATCCTGAAAAGAAGAAGCTA+AGG | 0.565994 | 5.3:-73437946 | MS.gene057069:intron |
| ACCTTGTCAACAACATTGCG+AGG | 0.587538 | 5.3:-73436530 | MS.gene057069:CDS |
| ATTAACATTTCAAGAAAGTG+AGG | 0.591223 | 5.3:-73437369 | MS.gene057069:intron |
| ATATCTGAGGGCCGAAAAGG+AGG | 0.595378 | 5.3:+73437026 | None:intergenic |
| TCTGGAAGTGGAGCATGAGC+TGG | 0.601431 | 5.3:-73438124 | MS.gene057069:intron |
| TCCTCGCAATGTTGTTGACA+AGG | 0.602106 | 5.3:+73436529 | None:intergenic |
| TGAATTGGAAAGTCATGAGA+AGG | 0.602939 | 5.3:-73436163 | MS.gene057069:CDS |
| TAGTAGACTTTGACAAAGTG+AGG | 0.605788 | 5.3:-73439164 | MS.gene057069:CDS |
| TCGACAAAGTGTTATCAGAA+GGG | 0.625778 | 5.3:-73436791 | MS.gene057069:CDS |
| AAGTACATTAATCAAAATGG+AGG | 0.631561 | 5.3:+73436117 | None:intergenic |
| AGCCATCAGAAATCTTGGCA+AGG | 0.646518 | 5.3:-73437799 | MS.gene057069:CDS |
| GAAGGCCTACCAAATAATGA+GGG | 0.655305 | 5.3:-73436145 | MS.gene057069:CDS |
| CCAATTGAAAGAGCTTTACG+AGG | 0.669698 | 5.3:-73438166 | MS.gene057069:CDS |
| GTTGTGTTTGGTGGCCTGTG+AGG | 0.681582 | 5.3:+73436391 | None:intergenic |
| ACTTGATTTGATCATCAGCG+AGG | 0.683715 | 5.3:+73436223 | None:intergenic |
| AATTGATGCTATGATAGACG+AGG | 0.695057 | 5.3:-73436829 | MS.gene057069:CDS |
| TGTTGAAGATAAAATCCTGG+AGG | 0.717731 | 5.3:-73436193 | MS.gene057069:CDS |
| TCGGCCTTTGACACACATCG+AGG | 0.738247 | 5.3:-73438608 | MS.gene057069:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATCAATATAAAAAA+AGG | + | chr5.3:73437175-73437194 | None:intergenic | 10.0% |
| !! | AAACAATCAATATAAAAAAA+GGG | + | chr5.3:73437174-73437193 | None:intergenic | 10.0% |
| !!! | TTTTTTATATTGATTGTTTT+TGG | - | chr5.3:73437175-73437194 | MS.gene057069:CDS | 10.0% |
| !! | AAAATATTATAGCTGAAGAA+AGG | - | chr5.3:73438531-73438550 | MS.gene057069:intron | 20.0% |
| !! | AAAATGAATCTTGTTAATTG+AGG | - | chr5.3:73436429-73436448 | MS.gene057069:CDS | 20.0% |
| !! | ATGAAATTAGAGTATGTAAT+TGG | + | chr5.3:73436535-73436554 | None:intergenic | 20.0% |
| !! | ATTAAGGGAAAAAAAACTAT+GGG | + | chr5.3:73437203-73437222 | None:intergenic | 20.0% |
| !! | CACAAACAAAACAAAATTAT+AGG | + | chr5.3:73436182-73436201 | None:intergenic | 20.0% |
| !! | GTTAACATATAATACTTCTT+AGG | - | chr5.3:73436255-73436274 | MS.gene057069:CDS | 20.0% |
| !! | TAAAATAATTGTTTCCTATG+AGG | + | chr5.3:73436649-73436668 | None:intergenic | 20.0% |
| !! | TCAACATTAAACATAAATGA+GGG | + | chr5.3:73437060-73437079 | None:intergenic | 20.0% |
| !! | TGAAATTAGAGTATGTAATT+GGG | + | chr5.3:73436534-73436553 | None:intergenic | 20.0% |
| !! | TTCAACATTAAACATAAATG+AGG | + | chr5.3:73437061-73437080 | None:intergenic | 20.0% |
| !!! | AATTTCATATTTTCTTGCAA+CGG | - | chr5.3:73436547-73436566 | MS.gene057069:CDS | 20.0% |
| !!! | TTGGTTGAAAATTTTAAACA+AGG | - | chr5.3:73438842-73438861 | MS.gene057069:intron | 20.0% |
| !!! | TTTGATTTTAACATATGTTG+AGG | - | chr5.3:73437590-73437609 | MS.gene057069:intron | 20.0% |
| ! | AACATATAATACTTCTTAGG+TGG | - | chr5.3:73436258-73436277 | MS.gene057069:CDS | 25.0% |
| ! | AATACATATGATGTCAACTA+TGG | + | chr5.3:73437627-73437646 | None:intergenic | 25.0% |
| ! | AATCTTAATAACGAAGCATA+TGG | + | chr5.3:73437862-73437881 | None:intergenic | 25.0% |
| ! | AATGTTAATTCCTTCTTAAC+TGG | + | chr5.3:73438116-73438135 | None:intergenic | 25.0% |
| ! | AGAAACAAGATTAGAATAAC+TGG | + | chr5.3:73438400-73438419 | None:intergenic | 25.0% |
| ! | ATAAAATATGAAGCTTGAAG+GGG | + | chr5.3:73436977-73436996 | None:intergenic | 25.0% |
| ! | ATATGCTTCGTTATTAAGAT+TGG | - | chr5.3:73437861-73437880 | MS.gene057069:intron | 25.0% |
| ! | ATTAACATTTCAAGAAAGTG+AGG | - | chr5.3:73438127-73438146 | MS.gene057069:CDS | 25.0% |
| ! | CAACATTAAACATAAATGAG+GGG | + | chr5.3:73437059-73437078 | None:intergenic | 25.0% |
| ! | CATAAAATATGAAGCTTGAA+GGG | + | chr5.3:73436978-73436997 | None:intergenic | 25.0% |
| ! | CATTAAGGGAAAAAAAACTA+TGG | + | chr5.3:73437204-73437223 | None:intergenic | 25.0% |
| ! | GAAATTAGAGTATGTAATTG+GGG | + | chr5.3:73436533-73436552 | None:intergenic | 25.0% |
| ! | GACGAACTTCATTATTATAT+AGG | - | chr5.3:73437461-73437480 | MS.gene057069:intron | 25.0% |
| ! | TAATAATGAAGTTCGTCAAA+AGG | + | chr5.3:73437458-73437477 | None:intergenic | 25.0% |
| ! | TAATCATTGCTCTTATTGAA+TGG | + | chr5.3:73437504-73437523 | None:intergenic | 25.0% |
| ! | TATGCTTCGTTATTAAGATT+GGG | - | chr5.3:73437862-73437881 | MS.gene057069:intron | 25.0% |
| ! | TCATAAAATATGAAGCTTGA+AGG | + | chr5.3:73436979-73436998 | None:intergenic | 25.0% |
| ! | TGACGAATTAAAATTGTTTC+TGG | - | chr5.3:73437354-73437373 | MS.gene057069:intron | 25.0% |
| ! | TTAACATATGTTGAGGTAAA+AGG | - | chr5.3:73437597-73437616 | MS.gene057069:intron | 25.0% |
| !! | GTCAATTTTTCGTATGTATT+TGG | + | chr5.3:73436504-73436523 | None:intergenic | 25.0% |
| !! | GTTATTCTAATCTTGTTTCT+AGG | - | chr5.3:73438400-73438419 | MS.gene057069:intron | 25.0% |
| !! | TCTTCAATGCTTCATTATTT+TGG | + | chr5.3:73439051-73439070 | None:intergenic | 25.0% |
| !!! | AAATAATGAAGCATTGAAGA+AGG | - | chr5.3:73439051-73439070 | MS.gene057069:intron | 25.0% |
| !!! | ATTAAAATTGTTTCTGGAAG+TGG | - | chr5.3:73437360-73437379 | MS.gene057069:intron | 25.0% |
| !!! | GAAGTTGTATACTATTTTGA+TGG | - | chr5.3:73437410-73437429 | MS.gene057069:CDS | 25.0% |
| !!! | TATCGCTTTTAAAGAAAACT+TGG | - | chr5.3:73438823-73438842 | MS.gene057069:intron | 25.0% |
| !!! | TTTTATGACTTTTTCATCTC+TGG | - | chr5.3:73436991-73437010 | MS.gene057069:CDS | 25.0% |
| AAAAGTTCAATCTCTTCATC+AGG | + | chr5.3:73437747-73437766 | None:intergenic | 30.0% | |
| AAACCAATGAAACAGTAACT+TGG | + | chr5.3:73438185-73438204 | None:intergenic | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.3:73438348-73438367 | None:intergenic | 30.0% | |
| AAGCTTATGCTATTGATACT+AGG | - | chr5.3:73438266-73438285 | MS.gene057069:intron | 30.0% | |
| AATTAACCAGCATGTCTTAA+AGG | + | chr5.3:73436583-73436602 | None:intergenic | 30.0% | |
| ACATCATATGTATTTCCCTT+TGG | - | chr5.3:73437633-73437652 | MS.gene057069:intron | 30.0% | |
| ACTGTGTTGAAACTAACTTT+AGG | + | chr5.3:73438875-73438894 | None:intergenic | 30.0% | |
| ACTTCACATCATAGTGAAAT+TGG | + | chr5.3:73437273-73437292 | None:intergenic | 30.0% | |
| ATATGACCAACAAGAACAAA+AGG | - | chr5.3:73437982-73438001 | MS.gene057069:CDS | 30.0% | |
| ATCATAGTGAAATTGGTATG+TGG | + | chr5.3:73437266-73437285 | None:intergenic | 30.0% | |
| ATCCAAAGATGAAGAATCAT+TGG | - | chr5.3:73438496-73438515 | MS.gene057069:intron | 30.0% | |
| ATCTTTGGATTCTATATCTG+AGG | + | chr5.3:73438486-73438505 | None:intergenic | 30.0% | |
| CTTGGCAAGGTTAAATAAAT+TGG | - | chr5.3:73437710-73437729 | MS.gene057069:intron | 30.0% | |
| GTATGTATTTGGCACTAATT+TGG | + | chr5.3:73436493-73436512 | None:intergenic | 30.0% | |
| GTGATGTGATATATAGAACA+TGG | - | chr5.3:73436783-73436802 | MS.gene057069:CDS | 30.0% | |
| TAAAATATGAAGCTTGAAGG+GGG | + | chr5.3:73436976-73436995 | None:intergenic | 30.0% | |
| TAAACAACTGAAACCATGAT+TGG | + | chr5.3:73437892-73437911 | None:intergenic | 30.0% | |
| TATGACCAACAAGAACAAAA+GGG | - | chr5.3:73437983-73438002 | MS.gene057069:CDS | 30.0% | |
| TCACTTGTACACTATGATAA+AGG | - | chr5.3:73436139-73436158 | MS.gene057069:CDS | 30.0% | |
| TCAGCAGAAAACTAAAAAGT+CGG | + | chr5.3:73437789-73437808 | None:intergenic | 30.0% | |
| TCTTTGGATTCTATATCTGA+GGG | + | chr5.3:73438485-73438504 | None:intergenic | 30.0% | |
| TGATACCTTGAAAACGTTAA+AGG | + | chr5.3:73436383-73436402 | None:intergenic | 30.0% | |
| TGTTTAGTAAATATGCTTGC+TGG | - | chr5.3:73437906-73437925 | MS.gene057069:intron | 30.0% | |
| TTAGTAGTTACATACTCAGT+TGG | - | chr5.3:73438153-73438172 | MS.gene057069:CDS | 30.0% | |
| TTCCAATGATTCTTCATCTT+TGG | + | chr5.3:73438501-73438520 | None:intergenic | 30.0% | |
| TTTATTTCCTGCACAACAAT+AGG | + | chr5.3:73438068-73438087 | None:intergenic | 30.0% | |
| ! | ATCAAGCTGTTACTTAATTG+CGG | - | chr5.3:73437099-73437118 | MS.gene057069:intron | 30.0% |
| ! | GCCAACACTTTAAAAATTGT+CGG | - | chr5.3:73438629-73438648 | MS.gene057069:CDS | 30.0% |
| ! | TCTCTGAAAATTTAACATGC+TGG | - | chr5.3:73437958-73437977 | MS.gene057069:CDS | 30.0% |
| ! | TCTTGTGGTTTTTATGCTTT+TGG | - | chr5.3:73436727-73436746 | MS.gene057069:CDS | 30.0% |
| ! | TGAAGAGATTGAACTTTTTG+AGG | - | chr5.3:73437749-73437768 | MS.gene057069:CDS | 30.0% |
| !! | AAGTGTTGAAGATAAAATCC+TGG | - | chr5.3:73439300-73439319 | MS.gene057069:intron | 30.0% |
| !! | GCTTTCATTTTCAAGAATGA+AGG | + | chr5.3:73438316-73438335 | None:intergenic | 30.0% |
| !! | TATTTTAGATGCATCCTCAT+AGG | - | chr5.3:73436632-73436651 | MS.gene057069:CDS | 30.0% |
| !!! | TTTTAAAGTGTTGGCTTTGT+TGG | + | chr5.3:73438624-73438643 | None:intergenic | 30.0% |
| AACATGGTTGCTATAGAGTT+TGG | - | chr5.3:73436799-73436818 | MS.gene057069:CDS | 35.0% | |
| AAGGCTTATTGTGAACTGTA+AGG | - | chr5.3:73437671-73437690 | MS.gene057069:intron | 35.0% | |
| AATTCTTCCTATTGTTGTGC+AGG | - | chr5.3:73438058-73438077 | MS.gene057069:intron | 35.0% | |
| AATTGATGCTATGATAGACG+AGG | - | chr5.3:73438667-73438686 | MS.gene057069:CDS | 35.0% | |
| ACATATGTTGAGGTAAAAGG+TGG | - | chr5.3:73437600-73437619 | MS.gene057069:intron | 35.0% | |
| ACCATACATATCGACCATAT+CGG | - | chr5.3:73436869-73436888 | MS.gene057069:CDS | 35.0% | |
| ACCGAAGATTCCATTAGAAA+AGG | + | chr5.3:73438009-73438028 | None:intergenic | 35.0% | |
| AGCAACTTCTTATGGAATTG+AGG | - | chr5.3:73438798-73438817 | MS.gene057069:intron | 35.0% | |
| ATATGGTTTCTGAACATGCA+AGG | + | chr5.3:73437845-73437864 | None:intergenic | 35.0% | |
| ATCCTGAAAAGAAGAAGCTA+AGG | - | chr5.3:73437550-73437569 | MS.gene057069:intron | 35.0% | |
| ATTCCATAAGAAGTTGCTCT+TGG | + | chr5.3:73438796-73438815 | None:intergenic | 35.0% | |
| CATACGTCATATGAATCTTG+TGG | - | chr5.3:73436712-73436731 | MS.gene057069:CDS | 35.0% | |
| CATTACCCTCATTATTTGGT+AGG | + | chr5.3:73439359-73439378 | None:intergenic | 35.0% | |
| CTCTTATTGAATGGCGTAAT+GGG | + | chr5.3:73437495-73437514 | None:intergenic | 35.0% | |
| GAAGATCTTGCAGAACAAAT+TGG | - | chr5.3:73436289-73436308 | MS.gene057069:CDS | 35.0% | |
| GCAACTTCTTATGGAATTGA+GGG | - | chr5.3:73438799-73438818 | MS.gene057069:intron | 35.0% | |
| GCAAGGTTAAATAAATTGGC+TGG | - | chr5.3:73437714-73437733 | MS.gene057069:intron | 35.0% | |
| TAGTAGACTTTGACAAAGTG+AGG | - | chr5.3:73436332-73436351 | MS.gene057069:CDS | 35.0% | |
| TCATATGTATTTCCCTTTGG+TGG | - | chr5.3:73437636-73437655 | MS.gene057069:intron | 35.0% | |
| TGAATTGGAAAGTCATGAGA+AGG | - | chr5.3:73439333-73439352 | MS.gene057069:intron | 35.0% | |
| TGTTGAAGATAAAATCCTGG+AGG | - | chr5.3:73439303-73439322 | MS.gene057069:intron | 35.0% | |
| TTTCTTGCAACGGAATTCAA+TGG | - | chr5.3:73436557-73436576 | MS.gene057069:CDS | 35.0% | |
| ! | AACAAAAGGGCCTTTTCTAA+TGG | - | chr5.3:73437996-73438015 | MS.gene057069:CDS | 35.0% |
| ! | AATGAAAGCTATTGATTGCC+AGG | - | chr5.3:73438327-73438346 | MS.gene057069:intron | 35.0% |
| ! | AGAATGAAGGCACATCAAAA+AGG | + | chr5.3:73438303-73438322 | None:intergenic | 35.0% |
| ! | AGTTAGTTTCAACACAGTCA+TGG | - | chr5.3:73438877-73438896 | MS.gene057069:intron | 35.0% |
| ! | ATCGACAAAGTGTTATCAGA+AGG | - | chr5.3:73438704-73438723 | MS.gene057069:intron | 35.0% |
| ! | GACAGAATGCTGAGATTTTA+AGG | + | chr5.3:73438741-73438760 | None:intergenic | 35.0% |
| ! | GACATCCTTTAACGTTTTCA+AGG | - | chr5.3:73436375-73436394 | MS.gene057069:CDS | 35.0% |
| ! | GCCTTTTCTAATGGAATCTT+CGG | - | chr5.3:73438005-73438024 | MS.gene057069:CDS | 35.0% |
| ! | TACCTTAGCTTCTTCTTTTC+AGG | + | chr5.3:73437555-73437574 | None:intergenic | 35.0% |
| ! | TCAAGCTGTTACTTAATTGC+GGG | - | chr5.3:73437100-73437119 | MS.gene057069:intron | 35.0% |
| ! | TCGACAAAGTGTTATCAGAA+GGG | - | chr5.3:73438705-73438724 | MS.gene057069:intron | 35.0% |
| ! | TGCCAGGTATTTTCTTTTTG+AGG | - | chr5.3:73438343-73438362 | MS.gene057069:intron | 35.0% |
| ! | TTTTCCCTTAATGCTTGTGA+GGG | - | chr5.3:73437211-73437230 | MS.gene057069:CDS | 35.0% |
| ! | TTTTTCCCTTAATGCTTGTG+AGG | - | chr5.3:73437210-73437229 | MS.gene057069:CDS | 35.0% |
| !! | CAACATTGACTTGTTCTAGT+TGG | + | chr5.3:73438940-73438959 | None:intergenic | 35.0% |
| !!! | GAGATTGAACTTTTTGAGGT+TGG | - | chr5.3:73437753-73437772 | MS.gene057069:CDS | 35.0% |
| !!! | GCCGACAATTTTTAAAGTGT+TGG | + | chr5.3:73438633-73438652 | None:intergenic | 35.0% |
| AACCTTGCCAAGATTTCTGA+TGG | + | chr5.3:73437702-73437721 | None:intergenic | 40.0% | |
| AAGAAGTTGCTCTTGGAAGT+TGG | + | chr5.3:73438789-73438808 | None:intergenic | 40.0% | |
| AAGATTGGGTCAACCAATCA+TGG | - | chr5.3:73437876-73437895 | MS.gene057069:intron | 40.0% | |
| ACGCCAAGTTACTGTTTCAT+TGG | - | chr5.3:73438179-73438198 | MS.gene057069:intron | 40.0% | |
| AGAAGGCCTACCAAATAATG+AGG | - | chr5.3:73439350-73439369 | MS.gene057069:intron | 40.0% | |
| AGAAGTTGCTCTTGGAAGTT+GGG | + | chr5.3:73438788-73438807 | None:intergenic | 40.0% | |
| ATAAAGGTCCTGCATATGCA+GGG | + | chr5.3:73437139-73437158 | None:intergenic | 40.0% | |
| ATAGAGACCACTCATGCTAA+AGG | - | chr5.3:73438596-73438615 | MS.gene057069:intron | 40.0% | |
| ATGATAGACGAGGATGTCAT+TGG | - | chr5.3:73438677-73438696 | MS.gene057069:CDS | 40.0% | |
| ATGCAGGACCTTTATGAAAC+TGG | - | chr5.3:73437144-73437163 | MS.gene057069:intron | 40.0% | |
| CCAAAAACAAGTCTCAAAGC+TGG | - | chr5.3:73438760-73438779 | MS.gene057069:intron | 40.0% | |
| CCAATTGAAAGAGCTTTACG+AGG | - | chr5.3:73437330-73437349 | MS.gene057069:intron | 40.0% | |
| CCACGAATGCAGTTAGAAAA+TGG | - | chr5.3:73438223-73438242 | MS.gene057069:intron | 40.0% | |
| CCTCGTAAAGCTCTTTCAAT+TGG | + | chr5.3:73437333-73437352 | None:intergenic | 40.0% | |
| CTCATTCTGATTCCAATTGC+AGG | - | chr5.3:73437303-73437322 | MS.gene057069:intron | 40.0% | |
| CTCTGGTTGTTGACAAATGT+TGG | - | chr5.3:73437008-73437027 | MS.gene057069:CDS | 40.0% | |
| CTTCCAAGAGCAACTTCTTA+TGG | - | chr5.3:73438790-73438809 | MS.gene057069:intron | 40.0% | |
| GAAGGCCTACCAAATAATGA+GGG | - | chr5.3:73439351-73439370 | MS.gene057069:intron | 40.0% | |
| GCCAAGCTTGAAAAACTACA+AGG | - | chr5.3:73439163-73439182 | MS.gene057069:CDS | 40.0% | |
| GCTCTTATTGAATGGCGTAA+TGG | + | chr5.3:73437496-73437515 | None:intergenic | 40.0% | |
| GGATAAGCCATCAGAAATCT+TGG | - | chr5.3:73437692-73437711 | MS.gene057069:intron | 40.0% | |
| TGAAGCTCAACAGTCAAAAG+TGG | - | chr5.3:73438571-73438590 | MS.gene057069:intron | 40.0% | |
| TGCAGGACCTTTATGAAACT+GGG | - | chr5.3:73437145-73437164 | MS.gene057069:intron | 40.0% | |
| TTCTGATTCCAATTGCAGGT+AGG | - | chr5.3:73437307-73437326 | MS.gene057069:intron | 40.0% | |
| TTGAAAAACTACAAGGCGAC+CGG | - | chr5.3:73439170-73439189 | MS.gene057069:CDS | 40.0% | |
| ! | AAAGGCCCTTTTGTTCTTGT+TGG | + | chr5.3:73437991-73438010 | None:intergenic | 40.0% |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.3:73436833-73436852 | MS.gene057069:CDS | 40.0% |
| ! | ACTTGATTTGATCATCAGCG+AGG | + | chr5.3:73439276-73439295 | None:intergenic | 40.0% |
| ! | ATATGCTTGCTGGTGATGAA+TGG | - | chr5.3:73437916-73437935 | MS.gene057069:intron | 40.0% |
| ! | ATGAAGGCACATCAAAAAGG+TGG | + | chr5.3:73438300-73438319 | None:intergenic | 40.0% |
| ! | CCATTTTCTAACTGCATTCG+TGG | + | chr5.3:73438226-73438245 | None:intergenic | 40.0% |
| ! | GAGGCATTACCCTCATTATT+TGG | + | chr5.3:73439363-73439382 | None:intergenic | 40.0% |
| !! | CGAATGTTGTTTCCTTGTTC+AGG | - | chr5.3:73438445-73438464 | MS.gene057069:intron | 40.0% |
| !! | CTTGTTTCTAGGCTGTTTCT+AGG | - | chr5.3:73438411-73438430 | MS.gene057069:intron | 40.0% |
| !! | TTGTTCAGGTTCCTCCTTTT+CGG | - | chr5.3:73438459-73438478 | MS.gene057069:intron | 40.0% |
| !! | TTTTCCATATCCAAAAGCGC+TGG | + | chr5.3:73436840-73436859 | None:intergenic | 40.0% |
| !!! | CCAGCTTTGAGACTTGTTTT+TGG | + | chr5.3:73438763-73438782 | None:intergenic | 40.0% |
| !!! | GCCTTGTAGTTTTTCAAGCT+TGG | + | chr5.3:73439167-73439186 | None:intergenic | 40.0% |
| AAGCACCCTCACAAGCATTA+AGG | + | chr5.3:73437219-73437238 | None:intergenic | 45.0% | |
| ACCTTGTCAACAACATTGCG+AGG | - | chr5.3:73438966-73438985 | MS.gene057069:intron | 45.0% | |
| ACTGGCAAACGCATGACATT+TGG | + | chr5.3:73438098-73438117 | None:intergenic | 45.0% | |
| AGCACCCTCACAAGCATTAA+GGG | + | chr5.3:73437218-73437237 | None:intergenic | 45.0% | |
| AGCCATCAGAAATCTTGGCA+AGG | - | chr5.3:73437697-73437716 | MS.gene057069:intron | 45.0% | |
| ATGTGTGTCAAAGGCCGATA+TGG | + | chr5.3:73436886-73436905 | None:intergenic | 45.0% | |
| CAAGAGAGTTGCGTTGTGTT+TGG | + | chr5.3:73439120-73439139 | None:intergenic | 45.0% | |
| CATAAAGGTCCTGCATATGC+AGG | + | chr5.3:73437140-73437159 | None:intergenic | 45.0% | |
| CATGCGTTTGCCAGTTAAGA+AGG | - | chr5.3:73438103-73438122 | MS.gene057069:intron | 45.0% | |
| CCAACATAACTGCCACCAAA+GGG | + | chr5.3:73437651-73437670 | None:intergenic | 45.0% | |
| GAAAAGGAGGAACCTGAACA+AGG | + | chr5.3:73438460-73438479 | None:intergenic | 45.0% | |
| GCCGATATGGTCGATATGTA+TGG | + | chr5.3:73436873-73436892 | None:intergenic | 45.0% | |
| GTTGGTACCTTTAGCATGAG+TGG | + | chr5.3:73438606-73438625 | None:intergenic | 45.0% | |
| TCCAACATAACTGCCACCAA+AGG | + | chr5.3:73437652-73437671 | None:intergenic | 45.0% | |
| TCCTCGCAATGTTGTTGACA+AGG | + | chr5.3:73438970-73438989 | None:intergenic | 45.0% | |
| TCTATATCTGAGGGCCGAAA+AGG | + | chr5.3:73438476-73438495 | None:intergenic | 45.0% | |
| TGAAAAACTACAAGGCGACC+GGG | - | chr5.3:73439171-73439190 | MS.gene057069:CDS | 45.0% | |
| ! | TAGCTCAATTCCAGCGCTTT+TGG | - | chr5.3:73436827-73436846 | MS.gene057069:CDS | 45.0% |
| ! | TCAATTGGCCTACCTGCAAT+TGG | + | chr5.3:73437318-73437337 | None:intergenic | 45.0% |
| ! | TTGGTGGCAGTTATGTTGGA+AGG | - | chr5.3:73437652-73437671 | MS.gene057069:intron | 45.0% |
| !! | CAATGGCCTTTAAGACATGC+TGG | - | chr5.3:73436574-73436593 | MS.gene057069:CDS | 45.0% |
| !! | GAATCTCAGCCATTTTAGCC+CGG | + | chr5.3:73439192-73439211 | None:intergenic | 45.0% |
| AGGGCAGCCCAGTTTCATAA+AGG | + | chr5.3:73437155-73437174 | None:intergenic | 50.0% | |
| ATATCTGAGGGCCGAAAAGG+AGG | + | chr5.3:73438473-73438492 | None:intergenic | 50.0% | |
| ATCTCAAAGACGTGCCTCAC+AGG | - | chr5.3:73439091-73439110 | MS.gene057069:intron | 50.0% | |
| GAGAGTTGCGTTGTGTTTGG+TGG | + | chr5.3:73439117-73439136 | None:intergenic | 50.0% | |
| GCTTCCTCGATGTGTGTCAA+AGG | + | chr5.3:73436895-73436914 | None:intergenic | 50.0% | |
| TTTGATCATCAGCGAGGCGA+TGG | + | chr5.3:73439270-73439289 | None:intergenic | 50.0% | |
| ! | CCCTTTGGTGGCAGTTATGT+TGG | - | chr5.3:73437648-73437667 | MS.gene057069:intron | 50.0% |
| ACAAGGCGACCGGGCTAAAA+TGG | - | chr5.3:73439180-73439199 | MS.gene057069:CDS | 55.0% | |
| CCAATTCAGCTTGTGCCTCC+AGG | + | chr5.3:73439321-73439340 | None:intergenic | 55.0% | |
| TCGGCCTTTGACACACATCG+AGG | - | chr5.3:73436888-73436907 | MS.gene057069:CDS | 55.0% | |
| TCTGGAAGTGGAGCATGAGC+TGG | - | chr5.3:73437372-73437391 | MS.gene057069:CDS | 55.0% | |
| TGCATATGCAGGGTCCGAGA+GGG | + | chr5.3:73437129-73437148 | None:intergenic | 55.0% | |
| TTAATTGCGGGACCCCCTCT+CGG | - | chr5.3:73437112-73437131 | MS.gene057069:intron | 55.0% | |
| ! | CCTGGAGGCACAAGCTGAAT+TGG | - | chr5.3:73439318-73439337 | MS.gene057069:intron | 55.0% |
| ! | GTTGTGTTTGGTGGCCTGTG+AGG | + | chr5.3:73439108-73439127 | None:intergenic | 55.0% |
| CATATGCAGGGTCCGAGAGG+GGG | + | chr5.3:73437127-73437146 | None:intergenic | 60.0% | |
| CTCTCGGACCCTGCATATGC+AGG | - | chr5.3:73437128-73437147 | MS.gene057069:intron | 60.0% | |
| CTGCATATGCAGGGTCCGAG+AGG | + | chr5.3:73437130-73437149 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGAGAG+GGG | + | chr5.3:73437128-73437147 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73436128 | 73439390 | 73436128 | ID=MS.gene057069 |
| chr5.3 | mRNA | 73436128 | 73439390 | 73436128 | ID=MS.gene057069.t1;Parent=MS.gene057069 |
| chr5.3 | exon | 73439358 | 73439390 | 73439358 | ID=MS.gene057069.t1.exon1;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73439358 | 73439390 | 73439358 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73439122 | 73439241 | 73439122 | ID=MS.gene057069.t1.exon2;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73439122 | 73439241 | 73439122 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73438597 | 73438719 | 73438597 | ID=MS.gene057069.t1.exon3;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73438597 | 73438719 | 73438597 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73438125 | 73438193 | 73438125 | ID=MS.gene057069.t1.exon4;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73438125 | 73438193 | 73438125 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73437947 | 73438035 | 73437947 | ID=MS.gene057069.t1.exon5;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73437947 | 73438035 | 73437947 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73437748 | 73437856 | 73437748 | ID=MS.gene057069.t1.exon6;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73437748 | 73437856 | 73437748 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73437370 | 73437438 | 73437370 | ID=MS.gene057069.t1.exon7;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73437370 | 73437438 | 73437370 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73437170 | 73437283 | 73437170 | ID=MS.gene057069.t1.exon8;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73437170 | 73437283 | 73437170 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| chr5.3 | exon | 73436128 | 73437051 | 73436128 | ID=MS.gene057069.t1.exon9;Parent=MS.gene057069.t1 |
| chr5.3 | CDS | 73436128 | 73437051 | 73436128 | ID=cds.MS.gene057069.t1;Parent=MS.gene057069.t1 |
| Gene Sequence |
| Protein sequence |
