AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007041

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007041.t1 MTR_1g042160 54.516 310 123 5 1 295 1 307 5.76e-115 334
MS.gene007041.t1 MTR_7g107160 42.813 327 149 7 3 295 120 442 1.27e-71 228
MS.gene007041.t1 MTR_7g107160 52.586 116 55 0 71 186 1 116 2.64e-36 135
MS.gene007041.t1 MTR_7g107200 38.498 213 123 3 1 206 1 212 3.29e-47 162
MS.gene007041.t1 MTR_7g107200 58.929 112 45 1 184 295 263 373 1.97e-35 131
MS.gene007041.t1 MTR_7g107170 63.393 112 40 1 184 295 152 262 2.35e-40 141
MS.gene007041.t1 MTR_7g107170 50.000 88 43 1 200 287 1 87 1.77e-18 83.6
MS.gene007041.t1 MTR_3g079840 43.939 132 70 2 13 144 57 184 2.19e-33 129
MS.gene007041.t1 MTR_3g079840 43.939 132 70 2 13 144 56 183 2.22e-33 129
MS.gene007041.t1 MTR_1g041240 42.222 135 73 2 13 147 58 187 1.07e-32 127
MS.gene007041.t1 MTR_1g041240 42.222 135 73 2 13 147 57 186 1.12e-32 127
MS.gene007041.t1 MTR_1g041240 42.222 135 73 2 13 147 59 188 1.12e-32 127
MS.gene007041.t1 MTR_5g086700 42.424 132 72 2 13 144 61 188 4.25e-32 125
MS.gene007041.t1 MTR_5g086700 42.424 132 72 2 13 144 61 188 4.33e-32 125
MS.gene007041.t1 MTR_5g091450 40.625 128 73 2 13 140 33 157 2.20e-29 118
MS.gene007041.t1 MTR_8g011730 35.484 155 94 3 2 153 3 154 6.54e-25 102
MS.gene007041.t1 MTR_8g011730 40.385 104 58 3 184 286 253 353 1.52e-17 82.0
MS.gene007041.t1 MTR_5g091180 41.085 129 71 3 13 140 46 170 1.52e-24 103
MS.gene007041.t1 MTR_5g091550 30.198 202 125 5 7 208 13 198 5.62e-22 95.9
MS.gene007041.t1 MTR_5g091550 30.392 204 127 5 7 208 13 203 5.85e-22 95.9
MS.gene007041.t1 MTR_3g106700 33.803 142 87 1 13 147 406 547 2.81e-20 91.7
MS.gene007041.t1 MTR_8g006190 31.452 124 80 2 24 142 1 124 1.83e-16 79.7
MS.gene007041.t1 MTR_4g123750 31.111 135 87 3 14 142 20 154 5.44e-16 77.0
MS.gene007041.t1 MTR_8g006190 32.692 104 65 2 44 142 13 116 1.04e-12 68.2
MS.gene007041.t1 MTR_2g034780 42.857 84 44 2 184 267 158 237 8.13e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007041.t1 AT5G06600 46.970 132 66 2 13 144 56 183 2.60e-34 132
MS.gene007041.t1 AT5G06600 46.970 132 66 2 13 144 55 182 2.88e-34 132
MS.gene007041.t1 AT5G06600 46.970 132 66 2 13 144 56 183 2.93e-34 132
MS.gene007041.t1 AT3G11910 45.455 132 68 2 13 144 54 181 4.11e-33 129
MS.gene007041.t1 AT3G11910 45.455 132 68 2 13 144 54 181 4.11e-33 129
MS.gene007041.t1 AT3G11910 45.455 132 68 2 13 144 55 182 4.27e-33 129
MS.gene007041.t1 AT3G11910 45.455 132 68 2 13 144 55 182 4.27e-33 129
MS.gene007041.t1 AT3G58250 36.641 131 81 1 12 142 9 137 1.24e-22 95.9
MS.gene007041.t1 AT3G58340 35.659 129 79 2 12 140 7 131 1.07e-20 90.5
MS.gene007041.t1 AT3G58340 35.938 128 78 2 13 140 8 131 1.38e-20 90.5
MS.gene007041.t1 AT3G58210 33.077 130 85 1 13 142 8 135 4.25e-19 86.3
MS.gene007041.t1 AT3G58270 34.615 130 81 2 13 142 8 133 1.26e-18 85.1
MS.gene007041.t1 AT3G58270 34.615 130 81 2 13 142 8 133 1.26e-18 85.1
MS.gene007041.t1 AT3G58270 34.615 130 81 2 13 142 8 133 1.26e-18 85.1
MS.gene007041.t1 AT5G26260 31.818 132 87 2 18 146 67 198 1.64e-17 82.0
MS.gene007041.t1 AT2G25320 31.690 142 89 2 13 147 405 545 3.83e-17 82.4
MS.gene007041.t1 AT2G25320 31.690 142 89 2 13 147 404 544 3.87e-17 82.4
MS.gene007041.t1 AT2G25320 31.690 142 89 2 13 147 405 545 5.09e-17 82.0
MS.gene007041.t1 AT3G58410 32.558 129 80 3 12 140 7 128 5.52e-17 80.1
MS.gene007041.t1 AT3G58290 30.657 137 85 3 12 140 10 144 1.57e-16 78.6
MS.gene007041.t1 AT3G58360 33.077 130 83 2 13 142 8 133 1.95e-16 78.2
MS.gene007041.t1 AT2G25330 33.099 142 88 1 13 147 359 500 5.11e-16 78.6
MS.gene007041.t1 AT3G44790 35.338 133 79 3 10 142 2 127 1.49e-15 76.3
MS.gene007041.t1 AT4G09770 29.851 134 88 3 14 144 12 142 1.54e-15 75.1
MS.gene007041.t1 AT4G09770 29.851 134 88 3 14 144 12 142 1.67e-15 75.9
MS.gene007041.t1 AT4G09770 29.851 134 88 3 14 144 12 142 1.67e-15 75.9
MS.gene007041.t1 AT4G09770 29.851 134 88 3 14 144 38 168 2.52e-15 75.1
MS.gene007041.t1 AT4G09770 29.851 134 88 3 14 144 38 168 2.61e-15 75.5
MS.gene007041.t1 AT5G26280 30.370 135 91 2 18 149 66 200 3.19e-15 75.5
MS.gene007041.t1 AT5G26280 30.435 138 93 2 15 149 82 219 3.85e-15 75.5
MS.gene007041.t1 AT3G17380 29.104 134 92 2 14 144 22 155 4.11e-15 74.7
MS.gene007041.t1 AT3G17380 30.147 136 91 3 13 147 175 307 3.19e-13 69.3
MS.gene007041.t1 AT2G05410 33.913 115 73 2 16 130 11 122 1.06e-14 73.6
MS.gene007041.t1 AT3G58370 33.846 130 81 3 13 140 9 135 1.34e-14 73.2
MS.gene007041.t1 AT5G26320 29.688 128 85 2 18 140 66 193 2.12e-14 73.2
MS.gene007041.t1 AT3G44800 30.827 133 89 2 10 142 2 131 4.87e-14 72.0
MS.gene007041.t1 AT3G58350 30.075 133 88 3 12 142 7 136 7.20e-14 70.9
MS.gene007041.t1 AT3G58350 30.075 133 88 3 12 142 7 136 7.20e-14 70.9
MS.gene007041.t1 AT3G58260 30.534 131 87 3 14 142 9 137 9.66e-14 70.9
MS.gene007041.t1 AT2G05420 32.836 134 79 4 16 141 12 142 1.10e-13 70.5
MS.gene007041.t1 AT3G58200 32.479 117 76 2 13 129 8 121 1.77e-13 70.1
MS.gene007041.t1 AT2G42480 31.818 132 81 4 14 143 8 132 1.27e-12 67.8
MS.gene007041.t1 AT4G09780 29.412 136 87 4 14 144 65 196 2.52e-12 67.4
MS.gene007041.t1 AT4G09780 29.412 136 87 4 14 144 65 196 2.83e-12 67.0
MS.gene007041.t1 AT3G27040 27.007 137 97 2 12 148 8 141 3.50e-12 65.9
MS.gene007041.t1 AT1G31390 30.833 120 80 2 12 130 7 124 3.85e-12 65.5
MS.gene007041.t1 AT3G58440 32.593 135 83 5 12 145 9 136 4.00e-12 67.0
MS.gene007041.t1 AT5G52330 29.167 144 90 6 11 151 18 152 9.78e-12 65.5
MS.gene007041.t1 AT5G52330 29.167 144 90 6 11 151 18 152 9.78e-12 65.5
MS.gene007041.t1 AT5G52330 29.167 144 90 6 11 151 18 152 9.78e-12 65.5
MS.gene007041.t1 AT3G20360 29.545 132 87 4 17 142 72 203 2.00e-11 64.3
MS.gene007041.t1 AT2G04170 26.923 130 92 2 15 141 11 140 2.17e-11 63.9
MS.gene007041.t1 AT2G04170 26.923 130 92 2 15 141 11 140 2.17e-11 63.9
MS.gene007041.t1 AT2G04170 26.772 127 90 2 18 141 136 262 2.75e-11 63.5
MS.gene007041.t1 AT2G04170 26.772 127 90 2 18 141 136 262 3.10e-11 63.9
MS.gene007041.t1 AT2G04170 26.923 130 92 2 15 141 93 222 4.01e-11 63.5
MS.gene007041.t1 AT2G04170 26.923 130 92 2 15 141 133 262 4.42e-11 63.5
MS.gene007041.t1 AT2G04170 26.923 130 92 2 15 141 133 262 4.42e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGGATCTTCAAGCTTTA+TGG 0.167588 7.3:+6530620 MS.gene007041:CDS
CAACCACTTATCTATTTATT+TGG 0.168309 7.3:+6529287 MS.gene007041:CDS
TTCACAATAAATCCTCTTTC+AGG 0.171817 7.3:-6530376 None:intergenic
AATAAATTTAGATTCTAAAT+TGG 0.219168 7.3:+6530870 MS.gene007041:CDS
TAAGGATCTTCAAGCTTTAT+GGG 0.300720 7.3:+6530621 MS.gene007041:CDS
TGAAAAGTTGAAGGAGTATA+TGG 0.322734 7.3:+6530744 MS.gene007041:CDS
AATTTAAGAGCTTGATTTAG+TGG 0.324568 7.3:-6530454 None:intergenic
AGATTGTATCTCCTTGGCTT+TGG 0.352439 7.3:-6528842 None:intergenic
CATGAATGAACAAGCTTGTA+AGG 0.386530 7.3:+6530603 MS.gene007041:CDS
TCTGAGCCTTTCGTTCTTTG+CGG 0.389418 7.3:+6528862 MS.gene007041:CDS
CTTGGCTTTGGCTTGCAAGC+GGG 0.406992 7.3:-6528830 None:intergenic
GCTGATGCAGAGTTGGCATT+GGG 0.423501 7.3:+6530541 MS.gene007041:CDS
TCAATGCAAATGAGGAGGCC+TGG 0.425040 7.3:+6530314 MS.gene007041:CDS
CCACTTATCTATTTATTTGG+AGG 0.431059 7.3:+6529290 MS.gene007041:CDS
CAATGCAAATGAGGAGGCCT+GGG 0.432100 7.3:+6530315 MS.gene007041:CDS
TTAATAAATTTGATGCGGCT+TGG 0.437706 7.3:+6530659 MS.gene007041:CDS
CTCAGATAATGCTATGATAG+AGG 0.465299 7.3:-6530344 None:intergenic
TCGTTCTTTGCGGCTATCCA+TGG 0.477888 7.3:+6528872 MS.gene007041:CDS
AGCTGATGCAGAGTTGGCAT+TGG 0.490268 7.3:+6530540 MS.gene007041:CDS
TGCAAACCGCTAACATGTCT+AGG 0.492551 7.3:+6529316 MS.gene007041:CDS
GTGGAAAGAGACATATTGAA+AGG 0.499242 7.3:+6530832 MS.gene007041:CDS
GGTAGCTCTAGAGCTTGAAA+TGG 0.499935 7.3:+6530765 MS.gene007041:CDS
AAGCTATGTGGAGAAGGCTC+TGG 0.504857 7.3:+6530717 MS.gene007041:CDS
GCAAACCGCTAACATGTCTA+GGG 0.506475 7.3:+6529317 MS.gene007041:CDS
CCTCCAAATAAATAGATAAG+TGG 0.506980 7.3:-6529290 None:intergenic
GGAGAGGGTAAAGACAAAGT+TGG 0.508063 7.3:+6530786 MS.gene007041:CDS
TCTGGAGGCTGAAAAGTTGA+AGG 0.511177 7.3:+6530735 MS.gene007041:CDS
AGGCTCAGATTGTATCTCCT+TGG 0.512550 7.3:-6528848 None:intergenic
CCTTGGCTTTGGCTTGCAAG+CGG 0.513226 7.3:-6528831 None:intergenic
TGAACAAGCTGATGCAGAGT+TGG 0.525468 7.3:+6530534 MS.gene007041:CDS
GTGAAGGATGCTTGTATCGT+TGG 0.528067 7.3:+6530394 MS.gene007041:CDS
TGAAACAAGCAACATGGAAG+TGG 0.534079 7.3:+6530501 MS.gene007041:CDS
TGGAAAGAGACATATTGAAA+GGG 0.534565 7.3:+6530833 MS.gene007041:CDS
ATAGACAGAACAGTCACAAA+AGG 0.536067 7.3:+6529390 MS.gene007041:CDS
GAGCTTAAGAATCCTGAAAG+AGG 0.536807 7.3:+6530364 MS.gene007041:CDS
GACAAAGTTGGATGTTGTTG+AGG 0.542018 7.3:+6530798 MS.gene007041:CDS
CCATCCCCTAGACATGTTAG+CGG 0.542567 7.3:-6529322 None:intergenic
CAAATAAATAGATAAGTGGT+TGG 0.545683 7.3:-6529286 None:intergenic
GAGGGTGTGTCTGTTTCCAA+AGG 0.558857 7.3:+6529248 MS.gene007041:CDS
AGGGTGTGTCTGTTTCCAAA+GGG 0.559008 7.3:+6529249 MS.gene007041:CDS
GAAATTTAATAAATTTGATG+CGG 0.565106 7.3:+6530654 MS.gene007041:CDS
AGAGACATATTGAAAGGGAA+AGG 0.566878 7.3:+6530838 MS.gene007041:CDS
CTCTAGAGCTTGAAATGGAG+AGG 0.570262 7.3:+6530770 MS.gene007041:CDS
CCGCTAACATGTCTAGGGGA+TGG 0.572316 7.3:+6529322 MS.gene007041:CDS
TTTAGCAACGAGAAGCTATG+TGG 0.573979 7.3:+6530705 MS.gene007041:CDS
AACGAGAAGCTATGTGGAGA+AGG 0.578646 7.3:+6530711 MS.gene007041:CDS
CTATGTGGAGAAGGCTCTGG+AGG 0.578776 7.3:+6530720 MS.gene007041:CDS
GCTAAAGAAGATTGAACAGT+GGG 0.580572 7.3:-6530688 None:intergenic
AAATTAACTACATCAGTGAC+AGG 0.584788 7.3:+6530472 MS.gene007041:CDS
TCTAGAGCTTGAAATGGAGA+GGG 0.594551 7.3:+6530771 MS.gene007041:CDS
GGATAGCCGCAAAGAACGAA+AGG 0.603426 7.3:-6528868 None:intergenic
CCGCTTGCAAGCCAAAGCCA+AGG 0.611814 7.3:+6528831 MS.gene007041:CDS
TAGGGGATGGAGCAGAGATG+TGG 0.612256 7.3:+6529335 MS.gene007041:CDS
TGAAAGAGGATTTATTGTGA+AGG 0.613594 7.3:+6530378 MS.gene007041:CDS
TCACGAGTTCAATGCAAATG+AGG 0.616391 7.3:+6530306 MS.gene007041:CDS
TGGATGTGAAACAAGCAACA+TGG 0.627458 7.3:+6530495 MS.gene007041:CDS
AACAAGCAACATGGAAGTGG+AGG 0.628644 7.3:+6530504 MS.gene007041:CDS
TGTTGAGGTTGATCGTGATG+TGG 0.635851 7.3:+6530813 MS.gene007041:CDS
CGAGTTCAATGCAAATGAGG+AGG 0.644091 7.3:+6530309 MS.gene007041:CDS
TATGATAGAGGAAAATCCCC+AGG 0.648596 7.3:-6530332 None:intergenic
CTGATGCAGAGTTGGCATTG+GGG 0.654733 7.3:+6530542 MS.gene007041:CDS
AATGCAAATGAGGAGGCCTG+GGG 0.676818 7.3:+6530316 MS.gene007041:CDS
TTAACTACATCAGTGACAGG+TGG 0.678101 7.3:+6530475 MS.gene007041:CDS
GGGTGTGTCTGTTTCCAAAG+GGG 0.687196 7.3:+6529250 MS.gene007041:CDS
CAAACCGCTAACATGTCTAG+GGG 0.704232 7.3:+6529318 MS.gene007041:CDS
TGCTAAAGAAGATTGAACAG+TGG 0.711246 7.3:-6530689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTTAGATTCTAAAT+TGG + chr7.3:6530870-6530889 MS.gene007041:CDS 10.0%
!! GAAATTTAATAAATTTGATG+CGG + chr7.3:6530654-6530673 MS.gene007041:CDS 15.0%
!! TATACATTAGTTAAAAAGTA+TGG - chr7.3:6529603-6529622 None:intergenic 15.0%
!!! AAAATTTTGAGAAATTTATC+TGG + chr7.3:6528791-6528810 MS.gene007041:CDS 15.0%
!!! AATAAATAAGGGTATAATAA+TGG - chr7.3:6529912-6529931 None:intergenic 15.0%
!!! ATTTTGAGAAAAAGAAAAAA+TGG - chr7.3:6529846-6529865 None:intergenic 15.0%
!!! GTTTGAAATTCAATAAATAA+GGG - chr7.3:6529923-6529942 None:intergenic 15.0%
!!! TGTTTGAAATTCAATAAATA+AGG - chr7.3:6529924-6529943 None:intergenic 15.0%
!!! ATTAATTGTGTTGATTTCAA+TGG - chr7.3:6530007-6530026 None:intergenic 20.0%
!!! ATTTGTGTTTTAATCTGATT+TGG + chr7.3:6529214-6529233 MS.gene007041:intron 20.0%
! AAAAAAAAAACAGCGAACTT+TGG - chr7.3:6530163-6530182 None:intergenic 25.0%
! AAAAGACAATTATTGTGAGA+CGG - chr7.3:6529821-6529840 None:intergenic 25.0%
! AAACGACTATAATTTAGAGA+CGG + chr7.3:6530056-6530075 MS.gene007041:intron 25.0%
! AATTTAAGAGCTTGATTTAG+TGG - chr7.3:6530457-6530476 None:intergenic 25.0%
! CAAATAAATAGATAAGTGGT+TGG - chr7.3:6529289-6529308 None:intergenic 25.0%
! CAACCACTTATCTATTTATT+TGG + chr7.3:6529287-6529306 MS.gene007041:CDS 25.0%
! CATGTGTATTTATTATTCAG+TGG - chr7.3:6529500-6529519 None:intergenic 25.0%
! CTCTAAATTATAGTCGTTTA+AGG - chr7.3:6530055-6530074 None:intergenic 25.0%
! CTCTTATTAATTGTAGTTAG+TGG - chr7.3:6529958-6529977 None:intergenic 25.0%
! GTATTTATTATTCAGTGGTT+AGG - chr7.3:6529495-6529514 None:intergenic 25.0%
! TAACGATCAAAATTGTACAT+TGG + chr7.3:6529725-6529744 MS.gene007041:intron 25.0%
!! AATTTTGAACACTTGATTCT+TGG - chr7.3:6528777-6528796 None:intergenic 25.0%
!!! ATGATGTATTTTGAAACGAA+GGG + chr7.3:6529165-6529184 MS.gene007041:intron 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG - chr7.3:6529544-6529563 None:intergenic 25.0%
!!! TAATGATTTTGATCTTTGAC+TGG + chr7.3:6530094-6530113 MS.gene007041:intron 25.0%
AAATTAACTACATCAGTGAC+AGG + chr7.3:6530472-6530491 MS.gene007041:CDS 30.0%
ATAGTGCACATTGCAAAAAT+TGG - chr7.3:6529562-6529581 None:intergenic 30.0%
CCACTTATCTATTTATTTGG+AGG + chr7.3:6529290-6529309 MS.gene007041:CDS 30.0%
CCTCCAAATAAATAGATAAG+TGG - chr7.3:6529293-6529312 None:intergenic 30.0%
GGAAAATGAGACATATTGAA+AGG - chr7.3:6530236-6530255 None:intergenic 30.0%
TGAAAGAGGATTTATTGTGA+AGG + chr7.3:6530378-6530397 MS.gene007041:CDS 30.0%
TGGAAAGAGACATATTGAAA+GGG + chr7.3:6530833-6530852 MS.gene007041:CDS 30.0%
TTAATAAATTTGATGCGGCT+TGG + chr7.3:6530659-6530678 MS.gene007041:CDS 30.0%
TTCACAATAAATCCTCTTTC+AGG - chr7.3:6530379-6530398 None:intergenic 30.0%
! TAAGGATCTTCAAGCTTTAT+GGG + chr7.3:6530621-6530640 MS.gene007041:CDS 30.0%
! TCGTGCAAAAGGATTTTAAA+GGG + chr7.3:6529430-6529449 MS.gene007041:intron 30.0%
! TGAAAAGTTGAAGGAGTATA+TGG + chr7.3:6530744-6530763 MS.gene007041:CDS 30.0%
! TTAAAATCCTTTTGCACGAA+GGG - chr7.3:6529429-6529448 None:intergenic 30.0%
! TTCGTGCAAAAGGATTTTAA+AGG + chr7.3:6529429-6529448 MS.gene007041:intron 30.0%
!! AAAAGGATTTTAAAGGGGAA+TGG + chr7.3:6529436-6529455 MS.gene007041:intron 30.0%
!! TTTAAAATCCTTTTGCACGA+AGG - chr7.3:6529430-6529449 None:intergenic 30.0%
!!! ATCTGATTTGGTTTTGCTTT+AGG + chr7.3:6529226-6529245 MS.gene007041:intron 30.0%
!!! CATGATGTATTTTGAAACGA+AGG + chr7.3:6529164-6529183 MS.gene007041:intron 30.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr7.3:6529770-6529789 MS.gene007041:intron 30.0%
!!! TGATGTATTTTGAAACGAAG+GGG + chr7.3:6529166-6529185 MS.gene007041:intron 30.0%
AGAGACATATTGAAAGGGAA+AGG + chr7.3:6530838-6530857 MS.gene007041:CDS 35.0%
ATAGACAGAACAGTCACAAA+AGG + chr7.3:6529390-6529409 MS.gene007041:CDS 35.0%
ATCATTCAAATGCCTTACCA+TGG - chr7.3:6528892-6528911 None:intergenic 35.0%
CATGAATGAACAAGCTTGTA+AGG + chr7.3:6530603-6530622 MS.gene007041:CDS 35.0%
CTCAGATAATGCTATGATAG+AGG - chr7.3:6530347-6530366 None:intergenic 35.0%
GCTAAAGAAGATTGAACAGT+GGG - chr7.3:6530691-6530710 None:intergenic 35.0%
GTAAGGATCTTCAAGCTTTA+TGG + chr7.3:6530620-6530639 MS.gene007041:CDS 35.0%
GTACATTGGTATATGTGAAG+TGG + chr7.3:6529739-6529758 MS.gene007041:intron 35.0%
GTGGAAAGAGACATATTGAA+AGG + chr7.3:6530832-6530851 MS.gene007041:CDS 35.0%
TATATGTGAAGTGGTTGACT+TGG + chr7.3:6529748-6529767 MS.gene007041:intron 35.0%
TGCTAAAGAAGATTGAACAG+TGG - chr7.3:6530692-6530711 None:intergenic 35.0%
! AAAAACAGCGAACTTTGGAA+TGG - chr7.3:6530158-6530177 None:intergenic 35.0%
! CAAAAGCATGTATCAAGAGT+GGG - chr7.3:6530275-6530294 None:intergenic 35.0%
!! AAAACAGCGAACTTTGGAAT+GGG - chr7.3:6530157-6530176 None:intergenic 35.0%
!! CGTGCAAAAGGATTTTAAAG+GGG + chr7.3:6529431-6529450 MS.gene007041:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr7.3:6529540-6529559 None:intergenic 35.0%
!!! GATTTGGTTTTGCTTTAGGA+GGG + chr7.3:6529230-6529249 MS.gene007041:intron 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr7.3:6529769-6529788 MS.gene007041:intron 35.0%
!!! TGATTTGGTTTTGCTTTAGG+AGG + chr7.3:6529229-6529248 MS.gene007041:intron 35.0%
AGACAATTATTGTGAGACGG+AGG - chr7.3:6529818-6529837 None:intergenic 40.0%
AGATTGTATCTCCTTGGCTT+TGG - chr7.3:6528845-6528864 None:intergenic 40.0%
CGACTATAATTTAGAGACGG+AGG + chr7.3:6530059-6530078 MS.gene007041:intron 40.0%
GACAAAGTTGGATGTTGTTG+AGG + chr7.3:6530798-6530817 MS.gene007041:CDS 40.0%
GACAATTATTGTGAGACGGA+GGG - chr7.3:6529817-6529836 None:intergenic 40.0%
GAGCTTAAGAATCCTGAAAG+AGG + chr7.3:6530364-6530383 MS.gene007041:CDS 40.0%
GTGGGTTTAGTTGTGTGAAA+AGG - chr7.3:6530257-6530276 None:intergenic 40.0%
TATGATAGAGGAAAATCCCC+AGG - chr7.3:6530335-6530354 None:intergenic 40.0%
TCACGAGTTCAATGCAAATG+AGG + chr7.3:6530306-6530325 MS.gene007041:CDS 40.0%
TGAAACAAGCAACATGGAAG+TGG + chr7.3:6530501-6530520 MS.gene007041:CDS 40.0%
TGGATGTGAAACAAGCAACA+TGG + chr7.3:6530495-6530514 MS.gene007041:CDS 40.0%
TTAACTACATCAGTGACAGG+TGG + chr7.3:6530475-6530494 MS.gene007041:CDS 40.0%
TTCAGTGGTTAGGATTTCAC+TGG - chr7.3:6529485-6529504 None:intergenic 40.0%
TTGAACTCGTGATCAGATTC+TGG - chr7.3:6530298-6530317 None:intergenic 40.0%
TTTAGCAACGAGAAGCTATG+TGG + chr7.3:6530705-6530724 MS.gene007041:CDS 40.0%
! AATGGATTCTCTCTAGTGAC+TGG + chr7.3:6529454-6529473 MS.gene007041:intron 40.0%
! GCAAAAGCATGTATCAAGAG+TGG - chr7.3:6530276-6530295 None:intergenic 40.0%
! TCTAGAGCTTGAAATGGAGA+GGG + chr7.3:6530771-6530790 MS.gene007041:CDS 40.0%
!! CTCTCGTGTGAAAGTATCTA+CGG - chr7.3:6530126-6530145 None:intergenic 40.0%
!! TAAGTGGTTGGCTGCATTTT+TGG - chr7.3:6529277-6529296 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr7.3:6529541-6529560 None:intergenic 40.0%
AACAAGCAACATGGAAGTGG+AGG + chr7.3:6530504-6530523 MS.gene007041:CDS 45.0%
AACGAGAAGCTATGTGGAGA+AGG + chr7.3:6530711-6530730 MS.gene007041:CDS 45.0%
AGGCTCAGATTGTATCTCCT+TGG - chr7.3:6528851-6528870 None:intergenic 45.0%
AGGGTGTGTCTGTTTCCAAA+GGG + chr7.3:6529249-6529268 MS.gene007041:CDS 45.0%
CAAACCGCTAACATGTCTAG+GGG + chr7.3:6529318-6529337 MS.gene007041:CDS 45.0%
CGAGTTCAATGCAAATGAGG+AGG + chr7.3:6530309-6530328 MS.gene007041:CDS 45.0%
GATTCTCTCTAGTGACTGGA+GGG + chr7.3:6529458-6529477 MS.gene007041:intron 45.0%
GCAAACCGCTAACATGTCTA+GGG + chr7.3:6529317-6529336 MS.gene007041:CDS 45.0%
GGAGAGGGTAAAGACAAAGT+TGG + chr7.3:6530786-6530805 MS.gene007041:CDS 45.0%
GTGAAGGATGCTTGTATCGT+TGG + chr7.3:6530394-6530413 MS.gene007041:CDS 45.0%
TCTGAGCCTTTCGTTCTTTG+CGG + chr7.3:6528862-6528881 MS.gene007041:CDS 45.0%
TCTGGAGGCTGAAAAGTTGA+AGG + chr7.3:6530735-6530754 MS.gene007041:CDS 45.0%
TGAACAAGCTGATGCAGAGT+TGG + chr7.3:6530534-6530553 MS.gene007041:CDS 45.0%
TGCAAACCGCTAACATGTCT+AGG + chr7.3:6529316-6529335 MS.gene007041:CDS 45.0%
TTCTCTTCCCTTCGTGCAAA+AGG + chr7.3:6529419-6529438 MS.gene007041:intron 45.0%
! TGTTGAGGTTGATCGTGATG+TGG + chr7.3:6530813-6530832 MS.gene007041:CDS 45.0%
!! CTCTAGAGCTTGAAATGGAG+AGG + chr7.3:6530770-6530789 MS.gene007041:CDS 45.0%
!! GGTAGCTCTAGAGCTTGAAA+TGG + chr7.3:6530765-6530784 MS.gene007041:CDS 45.0%
AAGCTATGTGGAGAAGGCTC+TGG + chr7.3:6530717-6530736 MS.gene007041:CDS 50.0%
AATGCAAATGAGGAGGCCTG+GGG + chr7.3:6530316-6530335 MS.gene007041:CDS 50.0%
AGCTGATGCAGAGTTGGCAT+TGG + chr7.3:6530540-6530559 MS.gene007041:CDS 50.0%
CAATGCAAATGAGGAGGCCT+GGG + chr7.3:6530315-6530334 MS.gene007041:CDS 50.0%
CCATCCCCTAGACATGTTAG+CGG - chr7.3:6529325-6529344 None:intergenic 50.0%
CTGATGCAGAGTTGGCATTG+GGG + chr7.3:6530542-6530561 MS.gene007041:CDS 50.0%
CTTTGCGGCTATCCATGGTA+AGG + chr7.3:6528877-6528896 MS.gene007041:intron 50.0%
GCTGATGCAGAGTTGGCATT+GGG + chr7.3:6530541-6530560 MS.gene007041:CDS 50.0%
GGATAGCCGCAAAGAACGAA+AGG - chr7.3:6528871-6528890 None:intergenic 50.0%
GGATTCTCTCTAGTGACTGG+AGG + chr7.3:6529457-6529476 MS.gene007041:intron 50.0%
GGGTGTGTCTGTTTCCAAAG+GGG + chr7.3:6529250-6529269 MS.gene007041:CDS 50.0%
TCAATGCAAATGAGGAGGCC+TGG + chr7.3:6530314-6530333 MS.gene007041:CDS 50.0%
TCGTTCTTTGCGGCTATCCA+TGG + chr7.3:6528872-6528891 MS.gene007041:CDS 50.0%
! GAGGGTGTGTCTGTTTCCAA+AGG + chr7.3:6529248-6529267 MS.gene007041:CDS 50.0%
!!! GCTGCATTTTTGGTCCCCTT+TGG - chr7.3:6529267-6529286 None:intergenic 50.0%
CCGCTAACATGTCTAGGGGA+TGG + chr7.3:6529322-6529341 MS.gene007041:CDS 55.0%
TAGGGGATGGAGCAGAGATG+TGG + chr7.3:6529335-6529354 MS.gene007041:CDS 55.0%
! CTATGTGGAGAAGGCTCTGG+AGG + chr7.3:6530720-6530739 MS.gene007041:CDS 55.0%
!! CCTTGGCTTTGGCTTGCAAG+CGG - chr7.3:6528834-6528853 None:intergenic 55.0%
!! CTTGGCTTTGGCTTGCAAGC+GGG - chr7.3:6528833-6528852 None:intergenic 55.0%
CCGCTTGCAAGCCAAAGCCA+AGG + chr7.3:6528831-6528850 MS.gene007041:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 6528766 6530897 6528766 ID=MS.gene007041
chr7.3 mRNA 6528766 6530897 6528766 ID=MS.gene007041.t1;Parent=MS.gene007041
chr7.3 exon 6528766 6528893 6528766 ID=MS.gene007041.t1.exon1;Parent=MS.gene007041.t1
chr7.3 CDS 6528766 6528893 6528766 ID=cds.MS.gene007041.t1;Parent=MS.gene007041.t1
chr7.3 exon 6529248 6529411 6529248 ID=MS.gene007041.t1.exon2;Parent=MS.gene007041.t1
chr7.3 CDS 6529248 6529411 6529248 ID=cds.MS.gene007041.t1;Parent=MS.gene007041.t1
chr7.3 exon 6530299 6530897 6530299 ID=MS.gene007041.t1.exon3;Parent=MS.gene007041.t1
chr7.3 CDS 6530299 6530897 6530299 ID=cds.MS.gene007041.t1;Parent=MS.gene007041.t1
Gene Sequence

>MS.gene007041

ATGAATTACCAAGAATCAAGTGTTCAAAATTTTGAGAAATTTATCTGGAAGATTGAGAATTTCTCCCGCTTGCAAGCCAAAGCCAAGGAGATACAATCTGAGCCTTTCGTTCTTTGCGGCTATCCATGGTAAGGCATTTGAATGATTGTAAATACATGTTGCAGTAAATCACTTCACATGTCAATACACAACTTTGAATGTTGATATCTTTAATTATATATAGTAAAAAATTATAAAAGTTTAATATTTTGAAAATATTTATCGAGACAAATCGAACAACATCTTACATGACATTTATATTCAGTCAAAGTAAGTTATATGAATATATTTATCGAGACAAATCGAACAACATCTTACATGACATTTATATTCAGTCAAAGTAAGTTATATGAATAGTGCATGATGTATTTTGAAACGAAGGGGTACACTCTTTGACACAATTTATTGCATTTGTGTTTTAATCTGATTTGGTTTTGCTTTAGGAGGGTGTGTCTGTTTCCAAAGGGGACCAAAAATGCAGCCAACCACTTATCTATTTATTTGGAGGCTATGCAAACCGCTAACATGTCTAGGGGATGGAGCAGAGATGTGGAGCTGAAGTTCGCTGTTTTCAATCAGCTCAATATAGACAGAACAGTCACAAAAGGTGTTTTTTCTCTTCCCTTCGTGCAAAAGGATTTTAAAGGGGAATGGATTCTCTCTAGTGACTGGAGGGTCCAGTGAAATCCTAACCACTGAATAATAAATACACATGAGCAATTAAATGTTACTCCCTCCGTTTCAAAATACATGTCCAATTTTTGCAATGTGCACTATTCACTTGACTTACTTTAACCATACTTTTTAACTAATGTATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTGTCTCGACAAATATTTTCTAAATATTAAATTTTTATAATTTTTTTACTTTAGATAATTAAAGATATTAACGATCAAAATTGTACATTGGTATATGTGAAGTGGTTGACTTGGACATGTATTTTGAAACAGAGGGAGTATAATTAAGAGAGATACTCCCTCCGTCTCACAATAATTGTCTTTTTACCATTTTTTCTTTTTCTCAAAATAATTGTCACTTTAGAATATCAATGCAACATTTATTACTTTTTTCCATTATTATACCCTTATTTATTGAATTTCAAACAACTTAACTACTCCACTAACTACAATTAATAAGAGTATTTTAGTAAATGATATTAATTTTACCATTGAAATCAACACAATTAATCATTTCTTTAATAATCGTGCACAAACCTTAAACGACTATAATTTAGAGACGGAGGAAGTAATATATTTAATGATTTTGATCTTTGACTGGAGAAAACCGTAGATACTTTCACACGAGAGAATCTTCTCCCATTCCAAAGTTCGCTGTTTTTTTTTTCTTTTCTTCATGCTTTATGTATTTTAGTATTTTATTCTGTTAAACATTGACCTTTCAATATGTCTCATTTTCCTTTTCACACAACTAAACCCACTCTTGATACATGCTTTTGCCAGAATCTGATCACGAGTTCAATGCAAATGAGGAGGCCTGGGGATTTTCCTCTATCATAGCATTATCTGAGCTTAAGAATCCTGAAAGAGGATTTATTGTGAAGGATGCTTGTATCGTTGGTGTAGAAGTTTTTGTTCGTAAGTCAACAAACGAGAAACCACTAAATCAAGCTCTTAAATTAACTACATCAGTGACAGGTGGATGTGAAACAAGCAACATGGAAGTGGAGGTTTGCAATGAACAAGCTGATGCAGAGTTGGCATTGGGGAGAGTTATGTATTTTCTTAAGACTAAAAAAGTGAAAGACATGAATGAACAAGCTTGTAAGGATCTTCAAGCTTTATGGGATGAACTCAAGAAATTTAATAAATTTGATGCGGCTTGGCTAGAGCCCACTGTTCAATCTTCTTTAGCAACGAGAAGCTATGTGGAGAAGGCTCTGGAGGCTGAAAAGTTGAAGGAGTATATGGTAGCTCTAGAGCTTGAAATGGAGAGGGTAAAGACAAAGTTGGATGTTGTTGAGGTTGATCGTGATGTGGAAAGAGACATATTGAAAGGGAAAGGCTTCAAAGAAATAAATTTAGATTCTAAATTGGAGTGA
Protein sequence

>MS.gene007041.t1

MNYQESSVQNFEKFIWKIENFSRLQAKAKEIQSEPFVLCGYPWRVCLFPKGTKNAANHLSIYLEAMQTANMSRGWSRDVELKFAVFNQLNIDRTVTKESDHEFNANEEAWGFSSIIALSELKNPERGFIVKDACIVGVEVFVRKSTNEKPLNQALKLTTSVTGGCETSNMEVEVCNEQADAELALGRVMYFLKTKKVKDMNEQACKDLQALWDELKKFNKFDAAWLEPTVQSSLATRSYVEKALEAEKLKEYMVALELEMERVKTKLDVVEVDRDVERDILKGKGFKEINLDSKLE