Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007043.t1 | GAU17568.1 | 61.1 | 332 | 104 | 5 | 1 | 316 | 404 | 726 | 7.60E-99 | 370.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007043.t1 | Q9FPT1 | 41.9 | 129 | 60 | 4 | 10 | 124 | 56 | 183 | 1.2e-15 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007043.t1 | A0A392MFG0 | 62.0 | 332 | 101 | 5 | 1 | 316 | 4 | 326 | 5.3e-102 | 380.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007043 | MS.gene038326 | PPI |
| MS.gene007043 | MS.gene038324 | PPI |
| MS.gene007043 | MS.gene057066 | PPI |
| MS.gene007043 | MS.gene038328 | PPI |
| MS.gene038330 | MS.gene007043 | PPI |
| MS.gene007043 | MS.gene030029 | PPI |
| MS.gene007043 | MS.gene030042 | PPI |
| MS.gene007043 | MS.gene057069 | PPI |
| MS.gene007043 | MS.gene017101 | PPI |
| MS.gene017102 | MS.gene007043 | PPI |
| MS.gene007043 | MS.gene017115 | PPI |
| MS.gene007043 | MS.gene038327 | PPI |
| MS.gene007043 | MS.gene057070 | PPI |
| MS.gene007043 | MS.gene030045 | PPI |
| MS.gene030033 | MS.gene007043 | PPI |
| MS.gene007043 | MS.gene017099 | PPI |
| MS.gene007043 | MS.gene030037 | PPI |
| MS.gene007043 | MS.gene057090 | PPI |
| MS.gene038336 | MS.gene007043 | PPI |
| MS.gene007043 | MS.gene038300 | PPI |
| MS.gene007043 | MS.gene038342 | PPI |
| MS.gene007043 | MS.gene017083 | PPI |
| MS.gene007043 | MS.gene017100 | PPI |
| MS.gene038323 | MS.gene007043 | PPI |
| MS.gene038333 | MS.gene007043 | PPI |
| MS.gene007043 | MS.gene030026 | PPI |
| MS.gene007043 | MS.gene057065 | PPI |
| MS.gene007043 | MS.gene030034 | PPI |
| MS.gene007043 | MS.gene017102 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007043.t1 | MTR_7g107200 | 43.132 | 364 | 150 | 6 | 9 | 315 | 12 | 375 | 1.01e-92 | 280 |
| MS.gene007043.t1 | MTR_1g042160 | 47.447 | 333 | 131 | 8 | 1 | 314 | 1 | 308 | 1.60e-89 | 270 |
| MS.gene007043.t1 | MTR_7g107160 | 50.296 | 338 | 119 | 11 | 9 | 317 | 129 | 446 | 1.15e-87 | 270 |
| MS.gene007043.t1 | MTR_7g107160 | 50.388 | 129 | 44 | 3 | 52 | 160 | 1 | 129 | 3.42e-31 | 122 |
| MS.gene007043.t1 | MTR_8g011730 | 34.648 | 355 | 170 | 10 | 9 | 315 | 13 | 353 | 4.85e-54 | 180 |
| MS.gene007043.t1 | MTR_7g107170 | 53.416 | 161 | 67 | 1 | 154 | 314 | 111 | 263 | 1.14e-48 | 164 |
| MS.gene007043.t1 | MTR_7g107170 | 74.713 | 87 | 22 | 0 | 219 | 305 | 1 | 87 | 3.35e-33 | 123 |
| MS.gene007043.t1 | MTR_2g034780 | 38.012 | 171 | 99 | 3 | 140 | 309 | 97 | 261 | 1.25e-29 | 114 |
| MS.gene007043.t1 | MTR_3g079840 | 37.589 | 141 | 70 | 5 | 1 | 124 | 45 | 184 | 1.36e-19 | 90.1 |
| MS.gene007043.t1 | MTR_3g079840 | 37.589 | 141 | 70 | 5 | 1 | 124 | 44 | 183 | 1.38e-19 | 90.1 |
| MS.gene007043.t1 | MTR_5g086700 | 36.842 | 133 | 69 | 4 | 4 | 122 | 55 | 186 | 1.46e-18 | 87.0 |
| MS.gene007043.t1 | MTR_5g086700 | 36.842 | 133 | 69 | 4 | 4 | 122 | 55 | 186 | 1.56e-18 | 86.7 |
| MS.gene007043.t1 | MTR_1g041240 | 36.719 | 128 | 67 | 4 | 10 | 124 | 59 | 185 | 1.65e-17 | 84.0 |
| MS.gene007043.t1 | MTR_1g041240 | 36.719 | 128 | 67 | 4 | 10 | 124 | 58 | 184 | 1.73e-17 | 83.6 |
| MS.gene007043.t1 | MTR_1g041240 | 36.719 | 128 | 67 | 4 | 10 | 124 | 57 | 183 | 1.92e-17 | 83.6 |
| MS.gene007043.t1 | MTR_5g091450 | 32.000 | 125 | 71 | 3 | 10 | 120 | 33 | 157 | 8.18e-16 | 78.6 |
| MS.gene007043.t1 | MTR_5g091180 | 31.618 | 136 | 77 | 4 | 10 | 131 | 46 | 179 | 7.19e-14 | 72.8 |
| MS.gene007043.t1 | MTR_5g091550 | 32.031 | 128 | 68 | 4 | 9 | 120 | 18 | 142 | 7.15e-11 | 63.2 |
| MS.gene007043.t1 | MTR_5g091550 | 32.031 | 128 | 68 | 4 | 9 | 120 | 18 | 142 | 7.20e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007043.t1 | AT5G06600 | 41.860 | 129 | 60 | 4 | 10 | 124 | 56 | 183 | 1.25e-19 | 90.1 |
| MS.gene007043.t1 | AT5G06600 | 41.860 | 129 | 60 | 4 | 10 | 124 | 55 | 182 | 1.28e-19 | 90.1 |
| MS.gene007043.t1 | AT5G06600 | 41.860 | 129 | 60 | 4 | 10 | 124 | 56 | 183 | 1.57e-19 | 89.7 |
| MS.gene007043.t1 | AT3G11910 | 39.535 | 129 | 63 | 4 | 10 | 124 | 54 | 181 | 1.67e-17 | 84.0 |
| MS.gene007043.t1 | AT3G11910 | 39.535 | 129 | 63 | 4 | 10 | 124 | 54 | 181 | 1.67e-17 | 84.0 |
| MS.gene007043.t1 | AT3G11910 | 39.535 | 129 | 63 | 4 | 10 | 124 | 55 | 182 | 1.67e-17 | 84.0 |
| MS.gene007043.t1 | AT3G11910 | 39.535 | 129 | 63 | 4 | 10 | 124 | 55 | 182 | 1.67e-17 | 84.0 |
| MS.gene007043.t1 | AT3G58340 | 24.825 | 286 | 157 | 9 | 8 | 255 | 6 | 271 | 2.09e-11 | 64.3 |
| MS.gene007043.t1 | AT2G25320 | 31.646 | 158 | 83 | 5 | 10 | 143 | 404 | 560 | 9.03e-11 | 63.5 |
| MS.gene007043.t1 | AT2G25320 | 31.646 | 158 | 83 | 5 | 10 | 143 | 405 | 561 | 9.11e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCCTTCTTCTATTTC+TGG | 0.076592 | 7.3:-6546770 | None:intergenic |
| CAATGCAAGTAAGGATTATT+TGG | 0.155785 | 7.3:+6546589 | MS.gene007043:CDS |
| TTTAGAAAAGAAAATTTATT+TGG | 0.215804 | 7.3:+6547090 | MS.gene007043:CDS |
| CAAGTCAAATTGAAATTAAA+TGG | 0.219404 | 7.3:-6547043 | None:intergenic |
| TTCACAATAAACCCTCTTTC+AGG | 0.229550 | 7.3:-6546647 | None:intergenic |
| CCAAAGTCTCGACCACATTT+TGG | 0.231606 | 7.3:-6546793 | None:intergenic |
| CTCTCACCTTTCTTGTCTTA+AGG | 0.269117 | 7.3:-6546967 | None:intergenic |
| GAACTTCTCTCACTTGAATA+AGG | 0.276609 | 7.3:+6545417 | MS.gene007043:CDS |
| GGATGATTTGTTTGTATCAA+TGG | 0.314357 | 7.3:+6545573 | MS.gene007043:intron |
| AGTAAGGATTATTTGGGTTT+CGG | 0.339740 | 7.3:+6546596 | MS.gene007043:CDS |
| GGAATGGGCATTCACTGCTT+TGG | 0.343437 | 7.3:+6546928 | MS.gene007043:CDS |
| TTCCTCTAGTAATGGAATAA+AGG | 0.345498 | 7.3:-6546846 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 7.3:+6546665 | MS.gene007043:CDS |
| CCTTCTTCTATTTCTGGCTC+TGG | 0.363990 | 7.3:-6546764 | None:intergenic |
| GAATGGGCATTCACTGCTTT+GGG | 0.364582 | 7.3:+6546929 | MS.gene007043:CDS |
| CCAAAATGTGGTCGAGACTT+TGG | 0.376541 | 7.3:+6546793 | MS.gene007043:CDS |
| AATGCAAGTAAGGATTATTT+GGG | 0.389997 | 7.3:+6546590 | MS.gene007043:CDS |
| GATGATTTGTTTGTATCAAT+GGG | 0.396301 | 7.3:+6545574 | MS.gene007043:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.401616 | 7.3:+6547213 | MS.gene007043:CDS |
| CTTTGAGTTCAATGCAAGTA+AGG | 0.409663 | 7.3:+6546580 | MS.gene007043:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.417770 | 7.3:+6546913 | MS.gene007043:CDS |
| GTACACTGCTAATATGTCTC+AGG | 0.423152 | 7.3:+6545640 | MS.gene007043:CDS |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 7.3:+6546802 | MS.gene007043:CDS |
| GTTGAAGCAGTTAAGTTAGC+TGG | 0.452845 | 7.3:-6546737 | None:intergenic |
| GGTAGCTCTAGAGTTGGAAT+TGG | 0.453675 | 7.3:+6547150 | MS.gene007043:CDS |
| TCTCTCACTTGAATAAGGTT+AGG | 0.456671 | 7.3:+6545422 | MS.gene007043:CDS |
| CATTTAATTTCAATTTGACT+TGG | 0.466420 | 7.3:+6547044 | MS.gene007043:CDS |
| GTTGGAATTGGAAAGGCTAA+TGG | 0.469386 | 7.3:+6547162 | MS.gene007043:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 7.3:+6547256 | MS.gene007043:CDS |
| AATTTATTTGGAGAAATTGA+AGG | 0.492678 | 7.3:+6547102 | MS.gene007043:CDS |
| GAGCTTCTTGATCCTGAAAG+AGG | 0.499293 | 7.3:+6546635 | MS.gene007043:CDS |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 7.3:+6546912 | MS.gene007043:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 7.3:+6546961 | MS.gene007043:CDS |
| TTTGGAGAAATTGAAGGAGG+CGG | 0.506949 | 7.3:+6547108 | MS.gene007043:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 7.3:+6546803 | MS.gene007043:CDS |
| ACCAGCAAGACACTTACAAA+AGG | 0.526631 | 7.3:+6545713 | MS.gene007043:CDS |
| AGCTTCTTGATCCTGAAAGA+GGG | 0.537917 | 7.3:+6546636 | MS.gene007043:CDS |
| TCCTGACACAAAATAAGTGA+AGG | 0.543719 | 7.3:-6546884 | None:intergenic |
| GAACATACTTCCTCTAGTAA+TGG | 0.544728 | 7.3:-6546854 | None:intergenic |
| TGAAAGAGGGTTTATTGTGA+AGG | 0.555016 | 7.3:+6546649 | MS.gene007043:CDS |
| TAATGTGGTAGCTCTAGAGT+TGG | 0.557259 | 7.3:+6547144 | MS.gene007043:CDS |
| ATTGGAAAGGCTAATGGTAA+AGG | 0.559107 | 7.3:+6547168 | MS.gene007043:CDS |
| CCAGAGCCAGAAATAGAAGA+AGG | 0.562182 | 7.3:+6546764 | MS.gene007043:CDS |
| CTCTAGAGTTGGAATTGGAA+AGG | 0.571519 | 7.3:+6547155 | MS.gene007043:CDS |
| TCTAAAGCAGATTGAACACA+AGG | 0.573483 | 7.3:-6547073 | None:intergenic |
| ACTTTGGATTTCAAGGGTGT+AGG | 0.575922 | 7.3:+6546809 | MS.gene007043:CDS |
| GGCCTTTATTCCATTACTAG+AGG | 0.578841 | 7.3:+6546844 | MS.gene007043:CDS |
| TTATTTGGAGAAATTGAAGG+AGG | 0.599804 | 7.3:+6547105 | MS.gene007043:CDS |
| CTGCTAATATGTCTCAGGGA+TGG | 0.608102 | 7.3:+6545645 | MS.gene007043:CDS |
| CCTGACACAAAATAAGTGAA+GGG | 0.611997 | 7.3:-6546883 | None:intergenic |
| TGATTTGTTTGTATCAATGG+GGG | 0.614550 | 7.3:+6545576 | MS.gene007043:CDS |
| TGCAGCAAGAGACTTGTTGG+AGG | 0.618326 | 7.3:+6547216 | MS.gene007043:CDS |
| ATGATTTGTTTGTATCAATG+GGG | 0.633184 | 7.3:+6545575 | MS.gene007043:CDS |
| TGAGCGATGAGAAGTTCACA+TGG | 0.645328 | 7.3:+6545386 | MS.gene007043:CDS |
| TACACTGCTAATATGTCTCA+GGG | 0.650132 | 7.3:+6545641 | MS.gene007043:CDS |
| GGGTGTAGGACAAATAGAGA+AGG | 0.651657 | 7.3:+6546823 | MS.gene007043:CDS |
| CTAACTTAACTGCTTCAACA+AGG | 0.670044 | 7.3:+6546741 | MS.gene007043:CDS |
| AGAAGGCCAACACCAAAATG+TGG | 0.670587 | 7.3:+6546781 | MS.gene007043:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTATACTAATAA+TGG | + | chr7.3:6546002-6546021 | MS.gene007043:intron | 10.0% |
| !! | TTTAGAAAAGAAAATTTATT+TGG | + | chr7.3:6547090-6547109 | MS.gene007043:CDS | 10.0% |
| !!! | ATTATTAGTATAACTTTTTT+TGG | - | chr7.3:6546003-6546022 | None:intergenic | 10.0% |
| !! | AATACAATAATAAGCAAAAA+TGG | - | chr7.3:6546234-6546253 | None:intergenic | 15.0% |
| !! | ATCAAAATATTTACTATTTG+CGG | + | chr7.3:6545819-6545838 | MS.gene007043:intron | 15.0% |
| !! | TAAGAATCTTCAAAAAATTT+GGG | + | chr7.3:6547009-6547028 | MS.gene007043:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | - | chr7.3:6545979-6545998 | None:intergenic | 15.0% |
| !!! | ATTACTAACAAACAAAATTT+TGG | - | chr7.3:6546488-6546507 | None:intergenic | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | - | chr7.3:6545995-6546014 | None:intergenic | 15.0% |
| !! | AATTTATTTGGAGAAATTGA+AGG | + | chr7.3:6547102-6547121 | MS.gene007043:CDS | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr7.3:6547046-6547065 | None:intergenic | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | + | chr7.3:6547008-6547027 | MS.gene007043:CDS | 20.0% |
| !! | TCAAAATATTTACTATTTGC+GGG | + | chr7.3:6545820-6545839 | MS.gene007043:intron | 20.0% |
| !! | TTCTAACTCTTTCTAATATT+GGG | - | chr7.3:6546070-6546089 | None:intergenic | 20.0% |
| !! | TTTCTAACTCTTTCTAATAT+TGG | - | chr7.3:6546071-6546090 | None:intergenic | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr7.3:6547044-6547063 | MS.gene007043:CDS | 20.0% |
| !!! | CTAAGTTATTTTAGATTAGT+CGG | + | chr7.3:6545788-6545807 | MS.gene007043:intron | 20.0% |
| !!! | CTAATGTGATTTTTTTTGTT+GGG | + | chr7.3:6546367-6546386 | MS.gene007043:intron | 20.0% |
| ! | AATGCAAGTAAGGATTATTT+GGG | + | chr7.3:6546590-6546609 | MS.gene007043:CDS | 25.0% |
| ! | ACATTAGGAGTTTAAAAAGT+CGG | - | chr7.3:6546354-6546373 | None:intergenic | 25.0% |
| ! | CCAACAAAAAAAATCACATT+AGG | - | chr7.3:6546369-6546388 | None:intergenic | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | + | chr7.3:6546498-6546517 | MS.gene007043:intron | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr7.3:6546961-6546980 | MS.gene007043:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.3:6545486-6545505 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | + | chr7.3:6545765-6545784 | MS.gene007043:intron | 25.0% |
| !! | AGTTAGATTCTGGAAAATTT+AGG | - | chr7.3:6546562-6546581 | None:intergenic | 25.0% |
| !!! | ATGATTTGTTTGTATCAATG+GGG | + | chr7.3:6545575-6545594 | MS.gene007043:CDS | 25.0% |
| !!! | CCTAATGTGATTTTTTTTGT+TGG | + | chr7.3:6546366-6546385 | MS.gene007043:intron | 25.0% |
| !!! | GATGATTTGTTTGTATCAAT+GGG | + | chr7.3:6545574-6545593 | MS.gene007043:CDS | 25.0% |
| AACAATAGTTTCGTATCATG+AGG | - | chr7.3:6545526-6545545 | None:intergenic | 30.0% | |
| ACAATAGTTTCGTATCATGA+GGG | - | chr7.3:6545525-6545544 | None:intergenic | 30.0% | |
| CAATGCAAGTAAGGATTATT+TGG | + | chr7.3:6546589-6546608 | MS.gene007043:CDS | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | + | chr7.3:6547012-6547031 | MS.gene007043:CDS | 30.0% | |
| TAAACAAACAGCAAAAGAGA+CGG | - | chr7.3:6546450-6546469 | None:intergenic | 30.0% | |
| TGTATTGTGTGTGAAATTTG+TGG | + | chr7.3:6546248-6546267 | MS.gene007043:intron | 30.0% | |
| TTATTTGGAGAAATTGAAGG+AGG | + | chr7.3:6547105-6547124 | MS.gene007043:CDS | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | - | chr7.3:6546572-6546591 | None:intergenic | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | - | chr7.3:6546341-6546360 | None:intergenic | 30.0% |
| ! | AGTAAGGATTATTTGGGTTT+CGG | + | chr7.3:6546596-6546615 | MS.gene007043:CDS | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | - | chr7.3:6546849-6546868 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr7.3:6547243-6547262 | MS.gene007043:CDS | 30.0% |
| !! | GGATGATTTGTTTGTATCAA+TGG | + | chr7.3:6545573-6545592 | MS.gene007043:intron | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | - | chr7.3:6546537-6546556 | None:intergenic | 30.0% |
| !! | TGATTTGTTTGTATCAATGG+GGG | + | chr7.3:6545576-6545595 | MS.gene007043:CDS | 30.0% |
| !!! | TTGTGTTTTGACTTTGCTTT+AGG | + | chr7.3:6545552-6545571 | MS.gene007043:intron | 30.0% |
| AGAAAAAAACTCGCAGGTTT+AGG | + | chr7.3:6546906-6546925 | MS.gene007043:CDS | 35.0% | |
| AGGTCAAAAATCAAGACTCA+GGG | - | chr7.3:6545943-6545962 | None:intergenic | 35.0% | |
| ATTGGAAAGGCTAATGGTAA+AGG | + | chr7.3:6547168-6547187 | MS.gene007043:CDS | 35.0% | |
| CCTGACACAAAATAAGTGAA+GGG | - | chr7.3:6546886-6546905 | None:intergenic | 35.0% | |
| CTAACTTAACTGCTTCAACA+AGG | + | chr7.3:6546741-6546760 | MS.gene007043:CDS | 35.0% | |
| CTCTTTAATCAGTGATCTAC+AGG | + | chr7.3:6545895-6545914 | MS.gene007043:intron | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | + | chr7.3:6546907-6546926 | MS.gene007043:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | - | chr7.3:6546857-6546876 | None:intergenic | 35.0% | |
| GAACTTCTCTCACTTGAATA+AGG | + | chr7.3:6545417-6545436 | MS.gene007043:CDS | 35.0% | |
| GGAAAAACTAAGGGATAATG+TGG | + | chr7.3:6547129-6547148 | MS.gene007043:CDS | 35.0% | |
| TACACTGCTAATATGTCTCA+GGG | + | chr7.3:6545641-6545660 | MS.gene007043:CDS | 35.0% | |
| TAGGTCAAAAATCAAGACTC+AGG | - | chr7.3:6545944-6545963 | None:intergenic | 35.0% | |
| TCCTGACACAAAATAAGTGA+AGG | - | chr7.3:6546887-6546906 | None:intergenic | 35.0% | |
| TCTCTCACTTGAATAAGGTT+AGG | + | chr7.3:6545422-6545441 | MS.gene007043:CDS | 35.0% | |
| TGAAAGAGGGTTTATTGTGA+AGG | + | chr7.3:6546649-6546668 | MS.gene007043:CDS | 35.0% | |
| TTCACAATAAACCCTCTTTC+AGG | - | chr7.3:6546650-6546669 | None:intergenic | 35.0% | |
| ! | CTGTAGATCACTGATTAAAG+AGG | - | chr7.3:6545897-6545916 | None:intergenic | 35.0% |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | + | chr7.3:6546580-6546599 | MS.gene007043:CDS | 35.0% |
| ! | TCTAAAGCAGATTGAACACA+AGG | - | chr7.3:6547076-6547095 | None:intergenic | 35.0% |
| !! | TAACTATACCTCTGAAGCAT+GGG | + | chr7.3:6546138-6546157 | MS.gene007043:intron | 35.0% |
| !! | TTAACTATACCTCTGAAGCA+TGG | + | chr7.3:6546137-6546156 | MS.gene007043:intron | 35.0% |
| AAACAGCAAAAGAGACGGAT+TGG | - | chr7.3:6546445-6546464 | None:intergenic | 40.0% | |
| AAACGGTGAAGTACATGTAC+CGG | + | chr7.3:6546166-6546185 | MS.gene007043:intron | 40.0% | |
| ACCAGCAAGACACTTACAAA+AGG | + | chr7.3:6545713-6545732 | MS.gene007043:CDS | 40.0% | |
| AGCTTCTTGATCCTGAAAGA+GGG | + | chr7.3:6546636-6546655 | MS.gene007043:CDS | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr7.3:6547256-6547275 | MS.gene007043:CDS | 40.0% | |
| CTCTCACCTTTCTTGTCTTA+AGG | - | chr7.3:6546970-6546989 | None:intergenic | 40.0% | |
| GACTCAAACCCACGAAATTA+GGG | - | chr7.3:6545853-6545872 | None:intergenic | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | + | chr7.3:6546844-6546863 | MS.gene007043:CDS | 40.0% | |
| GTACACTGCTAATATGTCTC+AGG | + | chr7.3:6545640-6545659 | MS.gene007043:CDS | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | + | chr7.3:6546803-6546822 | MS.gene007043:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr7.3:6546665-6546684 | MS.gene007043:CDS | 40.0% | |
| GTTCAAGTCCCTAATTTCGT+GGG | + | chr7.3:6545842-6545861 | MS.gene007043:intron | 40.0% | |
| GTTGAAGCAGTTAAGTTAGC+TGG | - | chr7.3:6546740-6546759 | None:intergenic | 40.0% | |
| GTTGGAATTGGAAAGGCTAA+TGG | + | chr7.3:6547162-6547181 | MS.gene007043:CDS | 40.0% | |
| TTTGGAGAAATTGAAGGAGG+CGG | + | chr7.3:6547108-6547127 | MS.gene007043:CDS | 40.0% | |
| ! | ACCTTTTGTAAGTGTCTTGC+TGG | - | chr7.3:6545717-6545736 | None:intergenic | 40.0% |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | + | chr7.3:6546809-6546828 | MS.gene007043:CDS | 40.0% |
| ! | CTGAAGCATGGGTTGTAAAA+CGG | + | chr7.3:6546149-6546168 | MS.gene007043:intron | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | - | chr7.3:6545963-6545982 | None:intergenic | 40.0% |
| ! | TTTTACAACCCATGCTTCAG+AGG | - | chr7.3:6546149-6546168 | None:intergenic | 40.0% |
| !! | CTCTAGAGTTGGAATTGGAA+AGG | + | chr7.3:6547155-6547174 | MS.gene007043:CDS | 40.0% |
| !! | GGCAGAAGATTTTGAAGAGA+TGG | + | chr7.3:6547237-6547256 | MS.gene007043:CDS | 40.0% |
| !! | TAATGTGGTAGCTCTAGAGT+TGG | + | chr7.3:6547144-6547163 | MS.gene007043:CDS | 40.0% |
| !! | TGTTGGCCTTCTTCTATTTC+TGG | - | chr7.3:6546773-6546792 | None:intergenic | 40.0% |
| !!! | CCCTTCACTTATTTTGTGTC+AGG | + | chr7.3:6546883-6546902 | MS.gene007043:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | + | chr7.3:6546912-6546931 | MS.gene007043:CDS | 45.0% | |
| AACGGTGAAGTACATGTACC+GGG | + | chr7.3:6546167-6546186 | MS.gene007043:intron | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | + | chr7.3:6546913-6546932 | MS.gene007043:CDS | 45.0% | |
| AGAAGGCCAACACCAAAATG+TGG | + | chr7.3:6546781-6546800 | MS.gene007043:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | + | chr7.3:6546793-6546812 | MS.gene007043:CDS | 45.0% | |
| CCAGAGCCAGAAATAGAAGA+AGG | + | chr7.3:6546764-6546783 | MS.gene007043:CDS | 45.0% | |
| CTGCTAATATGTCTCAGGGA+TGG | + | chr7.3:6545645-6545664 | MS.gene007043:CDS | 45.0% | |
| GAAGGAGGCGGAAAAACTAA+GGG | + | chr7.3:6547120-6547139 | MS.gene007043:CDS | 45.0% | |
| GAATGGGCATTCACTGCTTT+GGG | + | chr7.3:6546929-6546948 | MS.gene007043:CDS | 45.0% | |
| GAGCTTCTTGATCCTGAAAG+AGG | + | chr7.3:6546635-6546654 | MS.gene007043:CDS | 45.0% | |
| GGACTCAAACCCACGAAATT+AGG | - | chr7.3:6545854-6545873 | None:intergenic | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | + | chr7.3:6546823-6546842 | MS.gene007043:CDS | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | + | chr7.3:6546802-6546821 | MS.gene007043:CDS | 45.0% | |
| GGTCTTCTTCACCATGACAA+CGG | - | chr7.3:6545876-6545895 | None:intergenic | 45.0% | |
| GGTTCAAGTCCCTAATTTCG+TGG | + | chr7.3:6545841-6545860 | MS.gene007043:intron | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | + | chr7.3:6546900-6546919 | MS.gene007043:CDS | 45.0% | |
| GTCTTCTTCACCATGACAAC+GGG | - | chr7.3:6545875-6545894 | None:intergenic | 45.0% | |
| TACAGTACACGTACCCAGTA+CGG | - | chr7.3:6546200-6546219 | None:intergenic | 45.0% | |
| TGAAGGAGGCGGAAAAACTA+AGG | + | chr7.3:6547119-6547138 | MS.gene007043:CDS | 45.0% | |
| TGAGCGATGAGAAGTTCACA+TGG | + | chr7.3:6545386-6545405 | MS.gene007043:CDS | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | + | chr7.3:6547213-6547232 | MS.gene007043:CDS | 45.0% | |
| TGTTTGTATCAATGGGGGAC+AGG | + | chr7.3:6545581-6545600 | MS.gene007043:CDS | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | - | chr7.3:6546796-6546815 | None:intergenic | 45.0% |
| !! | CCTTCTTCTATTTCTGGCTC+TGG | - | chr7.3:6546767-6546786 | None:intergenic | 45.0% |
| !! | GGTAGCTCTAGAGTTGGAAT+TGG | + | chr7.3:6547150-6547169 | MS.gene007043:CDS | 45.0% |
| !! | TCTCGACCACATTTTGGTGT+TGG | - | chr7.3:6546790-6546809 | None:intergenic | 45.0% |
| ACAGTACACGTACCCAGTAC+GGG | - | chr7.3:6546199-6546218 | None:intergenic | 50.0% | |
| ATACCATGGATAGCCGCCAA+GGG | - | chr7.3:6545472-6545491 | None:intergenic | 50.0% | |
| GGAATGGGCATTCACTGCTT+TGG | + | chr7.3:6546928-6546947 | MS.gene007043:CDS | 50.0% | |
| GGGTACGTGTACTGTACTTG+TGG | + | chr7.3:6546204-6546223 | MS.gene007043:intron | 50.0% | |
| TACTCTGAGCCTTTCACCCT+TGG | + | chr7.3:6545453-6545472 | MS.gene007043:intron | 50.0% | |
| !! | TGCAGCAAGAGACTTGTTGG+AGG | + | chr7.3:6547216-6547235 | MS.gene007043:CDS | 50.0% |
| CATACCATGGATAGCCGCCA+AGG | - | chr7.3:6545473-6545492 | None:intergenic | 55.0% | |
| GGGTTTGAGTCCCGTTGTCA+TGG | + | chr7.3:6545862-6545881 | MS.gene007043:intron | 55.0% | |
| TCTGAGCCTTTCACCCTTGG+CGG | + | chr7.3:6545456-6545475 | MS.gene007043:intron | 55.0% | |
| ACCCAGTACGGGTGTGTACC+CGG | - | chr7.3:6546188-6546207 | None:intergenic | 60.0% | |
| ACCGGGTACACACCCGTACT+GGG | + | chr7.3:6546184-6546203 | MS.gene007043:intron | 60.0% | |
| GGATAGCCGCCAAGGGTGAA+AGG | - | chr7.3:6545465-6545484 | None:intergenic | 60.0% | |
| TACCGGGTACACACCCGTAC+TGG | + | chr7.3:6546183-6546202 | MS.gene007043:intron | 60.0% | |
| TCACCCTTGGCGGCTATCCA+TGG | + | chr7.3:6545466-6545485 | MS.gene007043:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6545370 | 6547294 | 6545370 | ID=MS.gene007043 |
| chr7.3 | mRNA | 6545370 | 6547294 | 6545370 | ID=MS.gene007043.t1;Parent=MS.gene007043 |
| chr7.3 | exon | 6545370 | 6545443 | 6545370 | ID=MS.gene007043.t1.exon1;Parent=MS.gene007043.t1 |
| chr7.3 | CDS | 6545370 | 6545443 | 6545370 | ID=cds.MS.gene007043.t1;Parent=MS.gene007043.t1 |
| chr7.3 | exon | 6545574 | 6545734 | 6545574 | ID=MS.gene007043.t1.exon2;Parent=MS.gene007043.t1 |
| chr7.3 | CDS | 6545574 | 6545734 | 6545574 | ID=cds.MS.gene007043.t1;Parent=MS.gene007043.t1 |
| chr7.3 | exon | 6546573 | 6547294 | 6546573 | ID=MS.gene007043.t1.exon3;Parent=MS.gene007043.t1 |
| chr7.3 | CDS | 6546573 | 6547294 | 6546573 | ID=cds.MS.gene007043.t1;Parent=MS.gene007043.t1 |
| Gene Sequence |
| Protein sequence |
