Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007046.t1 | GAU17568.1 | 62.5 | 352 | 103 | 3 | 1 | 352 | 404 | 726 | 1.90E-111 | 412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007046.t1 | Q9FPT1 | 40.7 | 123 | 70 | 2 | 41 | 162 | 63 | 183 | 1.0e-20 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007046.t1 | A0A392MFG0 | 63.9 | 352 | 98 | 3 | 1 | 352 | 4 | 326 | 1.2e-115 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007046 | MS.gene057066 | PPI |
| MS.gene007046 | MS.gene038327 | PPI |
| MS.gene007046 | MS.gene057069 | PPI |
| MS.gene007046 | MS.gene017101 | PPI |
| MS.gene007046 | MS.gene017099 | PPI |
| MS.gene007046 | MS.gene030033 | PPI |
| MS.gene007046 | MS.gene030037 | PPI |
| MS.gene007046 | MS.gene057090 | PPI |
| MS.gene007046 | MS.gene038300 | PPI |
| MS.gene038323 | MS.gene007046 | PPI |
| MS.gene007046 | MS.gene057070 | PPI |
| MS.gene038336 | MS.gene007046 | PPI |
| MS.gene007046 | MS.gene030045 | PPI |
| MS.gene007046 | MS.gene038342 | PPI |
| MS.gene007046 | MS.gene017100 | PPI |
| MS.gene007046 | MS.gene030026 | PPI |
| MS.gene007046 | MS.gene038330 | PPI |
| MS.gene007046 | MS.gene017102 | PPI |
| MS.gene007046 | MS.gene038326 | PPI |
| MS.gene007046 | MS.gene017083 | PPI |
| MS.gene007046 | MS.gene038324 | PPI |
| MS.gene007046 | MS.gene038328 | PPI |
| MS.gene007046 | MS.gene030029 | PPI |
| MS.gene007046 | MS.gene030042 | PPI |
| MS.gene007046 | MS.gene057065 | PPI |
| MS.gene007046 | MS.gene038323 | PPI |
| MS.gene007046 | MS.gene038333 | PPI |
| MS.gene007046 | MS.gene038336 | PPI |
| MS.gene007046 | MS.gene030034 | PPI |
| MS.gene007046 | MS.gene017115 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007046.t1 | MTR_7g107200 | 47.354 | 378 | 154 | 3 | 22 | 354 | 1 | 378 | 9.34e-115 | 338 |
| MS.gene007046.t1 | MTR_7g107160 | 55.652 | 345 | 122 | 11 | 24 | 354 | 120 | 447 | 6.41e-107 | 320 |
| MS.gene007046.t1 | MTR_7g107160 | 67.033 | 91 | 30 | 0 | 89 | 179 | 1 | 91 | 2.53e-33 | 128 |
| MS.gene007046.t1 | MTR_1g042160 | 50.151 | 331 | 140 | 5 | 22 | 350 | 1 | 308 | 1.36e-103 | 307 |
| MS.gene007046.t1 | MTR_8g011730 | 36.901 | 355 | 176 | 9 | 32 | 351 | 12 | 353 | 1.35e-68 | 219 |
| MS.gene007046.t1 | MTR_7g107170 | 58.385 | 161 | 59 | 1 | 190 | 350 | 111 | 263 | 4.74e-53 | 176 |
| MS.gene007046.t1 | MTR_7g107170 | 78.161 | 87 | 19 | 0 | 255 | 341 | 1 | 87 | 9.17e-37 | 134 |
| MS.gene007046.t1 | MTR_2g034780 | 41.096 | 146 | 83 | 1 | 200 | 345 | 119 | 261 | 9.74e-31 | 118 |
| MS.gene007046.t1 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 59 | 186 | 8.47e-27 | 112 |
| MS.gene007046.t1 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 58 | 185 | 8.79e-27 | 112 |
| MS.gene007046.t1 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 57 | 184 | 8.87e-27 | 112 |
| MS.gene007046.t1 | MTR_3g079840 | 38.462 | 130 | 77 | 2 | 34 | 162 | 56 | 183 | 1.89e-26 | 111 |
| MS.gene007046.t1 | MTR_3g079840 | 38.462 | 130 | 77 | 2 | 34 | 162 | 57 | 184 | 1.91e-26 | 111 |
| MS.gene007046.t1 | MTR_5g086700 | 36.923 | 130 | 79 | 2 | 34 | 162 | 61 | 188 | 2.64e-25 | 107 |
| MS.gene007046.t1 | MTR_5g086700 | 36.923 | 130 | 79 | 2 | 34 | 162 | 61 | 188 | 2.74e-25 | 107 |
| MS.gene007046.t1 | MTR_5g091450 | 34.921 | 126 | 80 | 2 | 34 | 158 | 33 | 157 | 4.66e-22 | 98.2 |
| MS.gene007046.t1 | MTR_5g091180 | 32.258 | 155 | 95 | 4 | 34 | 187 | 46 | 191 | 2.02e-18 | 87.0 |
| MS.gene007046.t1 | MTR_5g091550 | 31.613 | 155 | 95 | 3 | 32 | 185 | 17 | 161 | 4.11e-18 | 85.5 |
| MS.gene007046.t1 | MTR_5g091550 | 32.353 | 136 | 89 | 2 | 32 | 166 | 17 | 150 | 9.08e-18 | 84.7 |
| MS.gene007046.t1 | MTR_3g106700 | 27.811 | 169 | 108 | 2 | 8 | 162 | 376 | 544 | 4.45e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007046.t1 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 2.92e-27 | 113 |
| MS.gene007046.t1 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 55 | 182 | 3.54e-27 | 113 |
| MS.gene007046.t1 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 3.54e-27 | 113 |
| MS.gene007046.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 55 | 182 | 1.89e-26 | 111 |
| MS.gene007046.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 55 | 182 | 1.89e-26 | 111 |
| MS.gene007046.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 54 | 181 | 1.96e-26 | 111 |
| MS.gene007046.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 54 | 181 | 1.96e-26 | 111 |
| MS.gene007046.t1 | AT3G58250 | 26.866 | 335 | 194 | 11 | 22 | 338 | 1 | 302 | 1.39e-18 | 85.5 |
| MS.gene007046.t1 | AT3G58410 | 33.858 | 127 | 78 | 3 | 33 | 158 | 7 | 128 | 1.13e-16 | 80.1 |
| MS.gene007046.t1 | AT3G58340 | 32.031 | 128 | 82 | 3 | 33 | 158 | 7 | 131 | 2.63e-15 | 76.3 |
| MS.gene007046.t1 | AT3G58340 | 32.031 | 128 | 82 | 3 | 33 | 158 | 7 | 131 | 3.17e-15 | 75.9 |
| MS.gene007046.t1 | AT3G44790 | 25.641 | 312 | 207 | 9 | 32 | 329 | 3 | 303 | 6.03e-15 | 75.1 |
| MS.gene007046.t1 | AT3G58210 | 31.250 | 128 | 87 | 1 | 34 | 160 | 8 | 135 | 9.87e-15 | 74.7 |
| MS.gene007046.t1 | AT3G58350 | 32.061 | 131 | 85 | 3 | 33 | 160 | 7 | 136 | 1.06e-14 | 74.3 |
| MS.gene007046.t1 | AT3G58350 | 32.061 | 131 | 85 | 3 | 33 | 160 | 7 | 136 | 1.06e-14 | 74.3 |
| MS.gene007046.t1 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.53e-14 | 73.6 |
| MS.gene007046.t1 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.53e-14 | 73.6 |
| MS.gene007046.t1 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.53e-14 | 73.6 |
| MS.gene007046.t1 | AT3G58410 | 33.071 | 127 | 65 | 3 | 33 | 158 | 28 | 135 | 1.72e-13 | 70.9 |
| MS.gene007046.t1 | AT3G58370 | 33.333 | 129 | 80 | 4 | 34 | 158 | 9 | 135 | 1.76e-13 | 70.5 |
| MS.gene007046.t1 | AT3G44800 | 30.769 | 130 | 88 | 2 | 32 | 160 | 3 | 131 | 5.41e-13 | 69.7 |
| MS.gene007046.t1 | AT3G58260 | 27.517 | 298 | 177 | 10 | 35 | 325 | 9 | 274 | 3.42e-12 | 67.0 |
| MS.gene007046.t1 | AT2G05410 | 31.496 | 127 | 85 | 2 | 35 | 160 | 9 | 134 | 4.23e-12 | 66.6 |
| MS.gene007046.t1 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 405 | 561 | 9.92e-12 | 67.0 |
| MS.gene007046.t1 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 404 | 560 | 1.00e-11 | 67.0 |
| MS.gene007046.t1 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 405 | 561 | 1.49e-11 | 66.2 |
| MS.gene007046.t1 | AT3G58200 | 33.621 | 116 | 73 | 3 | 34 | 147 | 8 | 121 | 2.78e-11 | 64.3 |
| MS.gene007046.t1 | AT3G58360 | 30.000 | 140 | 90 | 3 | 22 | 160 | 1 | 133 | 7.28e-11 | 62.8 |
| MS.gene007046.t1 | AT3G17380 | 27.206 | 136 | 93 | 2 | 39 | 168 | 26 | 161 | 8.94e-11 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGATCTTCAAACTTTC+TGG | 0.140117 | 7.3:+6559231 | MS.gene007046:CDS |
| CCATGAGCTCACTTACATTT+TGG | 0.177848 | 7.3:-6559016 | None:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.236977 | 7.3:-6559266 | None:intergenic |
| CTTCTTCTAGCTTTGGCCTT+AGG | 0.245031 | 7.3:-6558986 | None:intergenic |
| ATGGAATAAAGCTTGGAATA+TGG | 0.257239 | 7.3:+6558011 | MS.gene007046:CDS |
| AGAAAAGAAGTCGCAAGTTT+AGG | 0.259373 | 7.3:+6559129 | MS.gene007046:CDS |
| CCTAGTGTTCAATCGGCTTT+AGG | 0.267455 | 7.3:+6559296 | MS.gene007046:CDS |
| CTCGCACCTTTCTTGTCTTA+AGG | 0.292864 | 7.3:-6559190 | None:intergenic |
| GGAATGGGCGTTCACTGCTT+TGG | 0.299493 | 7.3:+6559151 | MS.gene007046:CDS |
| CCTTGGCCTTCTTCTAGCTT+TGG | 0.325091 | 7.3:-6558993 | None:intergenic |
| GAATGGGCGTTCACTGCTTT+GGG | 0.331310 | 7.3:+6559152 | MS.gene007046:CDS |
| GAAAAGAAGTCGCAAGTTTA+GGG | 0.346429 | 7.3:+6559130 | MS.gene007046:CDS |
| TTCTTCTAGCTTTGGCCTTA+GGG | 0.362417 | 7.3:-6558985 | None:intergenic |
| TTCTATGTGTCCCATACCCT+TGG | 0.390125 | 7.3:-6559042 | None:intergenic |
| TTCACAATAAACCCCTTGTT+AGG | 0.392129 | 7.3:-6558876 | None:intergenic |
| TGATGCTGCAAGAGACTTGT+TGG | 0.396572 | 7.3:+6559436 | MS.gene007046:CDS |
| TAAGGATCTTCAAACTTTCT+GGG | 0.397628 | 7.3:+6559232 | MS.gene007046:CDS |
| TATGAATGACTTGGCTTGTA+AGG | 0.404544 | 7.3:+6559214 | MS.gene007046:CDS |
| TGGAATAAAGCTTGGAATAT+GGG | 0.416500 | 7.3:+6558012 | MS.gene007046:CDS |
| GCTCATGGATTCCAAGGGTA+TGG | 0.447022 | 7.3:+6559031 | MS.gene007046:CDS |
| CCTAAAGCCGATTGAACACT+AGG | 0.454981 | 7.3:-6559296 | None:intergenic |
| CATTTAATTTCAATTTGACT+TGG | 0.459388 | 7.3:+6559267 | MS.gene007046:CDS |
| GTTAGAGCCTAGTGTTCAAT+CGG | 0.460269 | 7.3:+6559289 | MS.gene007046:CDS |
| AGGATGATTTATCTGTCTAA+AGG | 0.463873 | 7.3:+6558269 | MS.gene007046:intron |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 7.3:+6559479 | MS.gene007046:CDS |
| TAGCTTTGGCCTTAGGGAAG+CGG | 0.483205 | 7.3:-6558979 | None:intergenic |
| GGTAGCTCAAGAGTTGGAAT+TGG | 0.485466 | 7.3:+6559373 | MS.gene007046:CDS |
| GGATAGCCGCCTAGGACAAA+AGG | 0.485898 | 7.3:-6558123 | None:intergenic |
| AGCAACGTTGCAATCACAAA+AGG | 0.487829 | 7.3:+6558413 | MS.gene007046:CDS |
| CCAAAATGTAAGTGAGCTCA+TGG | 0.490013 | 7.3:+6559016 | MS.gene007046:CDS |
| ACTCTACATGGAATAAAGCT+TGG | 0.491560 | 7.3:+6558004 | MS.gene007046:CDS |
| AAGTCGCAAGTTTAGGGAAT+GGG | 0.503721 | 7.3:+6559136 | MS.gene007046:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 7.3:+6559184 | MS.gene007046:CDS |
| TTGTCCTAGGCGGCTATCCA+TGG | 0.509014 | 7.3:+6558127 | MS.gene007046:CDS |
| AGAAAAGCTAAAGGATAATG+TGG | 0.523643 | 7.3:+6559352 | MS.gene007046:CDS |
| TGCTGGCACTCAATAAGTGA+AGG | 0.542266 | 7.3:-6559107 | None:intergenic |
| CTAAGGCCAAAGCTAGAAGA+AGG | 0.558810 | 7.3:+6558987 | MS.gene007046:CDS |
| TAATGTGGTAGCTCAAGAGT+TGG | 0.559742 | 7.3:+6559367 | MS.gene007046:CDS |
| AAGTGAGCTCATGGATTCCA+AGG | 0.561824 | 7.3:+6559025 | MS.gene007046:CDS |
| ATGATTTATCTGTCTAAAGG+TGG | 0.562064 | 7.3:+6558272 | MS.gene007046:CDS |
| CTCATGGATTCCAAGGGTAT+GGG | 0.563344 | 7.3:+6559032 | MS.gene007046:CDS |
| AAACATACTTCATCTAGTAA+TGG | 0.564644 | 7.3:-6559077 | None:intergenic |
| CATACCATGGATAGCCGCCT+AGG | 0.565038 | 7.3:-6558131 | None:intergenic |
| GCAAACTGCGAATATGTTTG+AGG | 0.565917 | 7.3:+6558340 | MS.gene007046:CDS |
| AAAAGTTTGAGAAATTTACA+TGG | 0.568464 | 7.3:+6558055 | MS.gene007046:CDS |
| GAATTTCTCTCGCTTGAACA+AGG | 0.568755 | 7.3:+6558086 | MS.gene007046:CDS |
| GAAGTCGCAAGTTTAGGGAA+TGG | 0.569896 | 7.3:+6559135 | MS.gene007046:CDS |
| GTAACTTAACCGCTTCCCTA+AGG | 0.570009 | 7.3:+6558970 | MS.gene007046:CDS |
| AGAAGTTTGAGAACTCTACA+TGG | 0.576561 | 7.3:+6557992 | MS.gene007046:CDS |
| TCTAAAGGTGGGAGGAACAC+AGG | 0.578325 | 7.3:+6558284 | MS.gene007046:CDS |
| GCCGCCTAGGACAAAAGGCT+CGG | 0.579082 | 7.3:-6558118 | None:intergenic |
| AAAGGAGGTAGAAAAGCTAA+AGG | 0.580307 | 7.3:+6559343 | MS.gene007046:CDS |
| TTCATCTAGTAATGGAACAA+AGG | 0.580421 | 7.3:-6559069 | None:intergenic |
| CTGCGAATATGTTTGAGGGA+TGG | 0.586576 | 7.3:+6558345 | MS.gene007046:CDS |
| GAGAAACGACTAAATCAAGA+AGG | 0.587356 | 7.3:+6558948 | MS.gene007046:CDS |
| CTCAAGAGTTGGAATTGGAG+AGG | 0.595626 | 7.3:+6559378 | MS.gene007046:CDS |
| TGATTTATCTGTCTAAAGGT+GGG | 0.600271 | 7.3:+6558273 | MS.gene007046:CDS |
| TGAGCTTCATGATCCTAACA+AGG | 0.607224 | 7.3:+6558863 | MS.gene007046:CDS |
| CAAACTGCGAATATGTTTGA+GGG | 0.611736 | 7.3:+6558341 | MS.gene007046:CDS |
| GGTGCGAGATATGAATGACT+TGG | 0.624462 | 7.3:+6559205 | MS.gene007046:CDS |
| TGCTGCAAGAGACTTGTTGG+AGG | 0.627839 | 7.3:+6559439 | MS.gene007046:CDS |
| GCTGGCACTCAATAAGTGAA+GGG | 0.632129 | 7.3:-6559106 | None:intergenic |
| AGCTTCATGATCCTAACAAG+GGG | 0.641496 | 7.3:+6558865 | MS.gene007046:CDS |
| CCAAAGCTAGAAGAAGGCCA+AGG | 0.642510 | 7.3:+6558993 | MS.gene007046:CDS |
| GAGCTTCATGATCCTAACAA+GGG | 0.645789 | 7.3:+6558864 | MS.gene007046:CDS |
| AGTGAGCTCATGGATTCCAA+GGG | 0.660252 | 7.3:+6559026 | MS.gene007046:CDS |
| TTTATCTGTCTAAAGGTGGG+AGG | 0.684955 | 7.3:+6558276 | MS.gene007046:CDS |
| GGATCTTCAAACTTTCTGGG+AGG | 0.688818 | 7.3:+6559235 | MS.gene007046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTAATTTCATTATTATA+AGG | - | chr7.3:6558579-6558598 | None:intergenic | 10.0% |
| !! | AATTTCATTATTATACTAAC+TGG | - | chr7.3:6558555-6558574 | None:intergenic | 15.0% |
| !! | AAAAGTTTGAGAAATTTACA+TGG | + | chr7.3:6558055-6558074 | MS.gene007046:CDS | 20.0% |
| !! | ATCTAATAAATTGTAACATG+TGG | - | chr7.3:6558177-6558196 | None:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr7.3:6559269-6559288 | None:intergenic | 20.0% |
| !! | CATGTTACAATTTATTAGAT+CGG | + | chr7.3:6558177-6558196 | MS.gene007046:intron | 20.0% |
| !! | TTAAATAATTGTTTGTAGAG+AGG | - | chr7.3:6558452-6558471 | None:intergenic | 20.0% |
| !!! | AAGTTATTTTGAGAAACTAA+AGG | + | chr7.3:6559325-6559344 | MS.gene007046:CDS | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr7.3:6559267-6559286 | MS.gene007046:CDS | 20.0% |
| ! | AAACATACTTCATCTAGTAA+TGG | - | chr7.3:6559080-6559099 | None:intergenic | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr7.3:6559184-6559203 | MS.gene007046:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.3:6558147-6558166 | None:intergenic | 25.0% |
| ! | TTGAATTCATAGTTAGATTC+TGG | - | chr7.3:6558798-6558817 | None:intergenic | 25.0% |
| !! | AAAATACTCTTTTACACGTA+CGG | + | chr7.3:6558204-6558223 | MS.gene007046:intron | 25.0% |
| !!! | ATTACCATTGACTGAAATTT+TGG | + | chr7.3:6558695-6558714 | MS.gene007046:intron | 25.0% |
| !!! | GATATGATTTGGTTTTGTTT+AGG | + | chr7.3:6558249-6558268 | MS.gene007046:intron | 25.0% |
| !!! | GTGTTTTGAATGATATGATT+TGG | + | chr7.3:6558238-6558257 | MS.gene007046:intron | 25.0% |
| !!! | TTATTTTGAGAAACTAAAGG+AGG | + | chr7.3:6559328-6559347 | MS.gene007046:CDS | 25.0% |
| AGAAAAGCTAAAGGATAATG+TGG | + | chr7.3:6559352-6559371 | MS.gene007046:CDS | 30.0% | |
| AGAACCAAAATTTCAGTCAA+TGG | - | chr7.3:6558702-6558721 | None:intergenic | 30.0% | |
| AGGATGATTTATCTGTCTAA+AGG | + | chr7.3:6558269-6558288 | MS.gene007046:intron | 30.0% | |
| ATGATTTATCTGTCTAAAGG+TGG | + | chr7.3:6558272-6558291 | MS.gene007046:CDS | 30.0% | |
| ATGGAATAAAGCTTGGAATA+TGG | + | chr7.3:6558011-6558030 | MS.gene007046:CDS | 30.0% | |
| CAGCCTTCAAAAAAATTGAT+AGG | - | chr7.3:6558319-6558338 | None:intergenic | 30.0% | |
| CTAAACAAGCATATATATGC+TGG | - | chr7.3:6558646-6558665 | None:intergenic | 30.0% | |
| GTGAAAAATGCTATCATTGT+TGG | + | chr7.3:6558894-6558913 | MS.gene007046:CDS | 30.0% | |
| TAAGGATCTTCAAACTTTCT+GGG | + | chr7.3:6559232-6559251 | MS.gene007046:CDS | 30.0% | |
| TGATTTATCTGTCTAAAGGT+GGG | + | chr7.3:6558273-6558292 | MS.gene007046:CDS | 30.0% | |
| TGGAATAAAGCTTGGAATAT+GGG | + | chr7.3:6558012-6558031 | MS.gene007046:CDS | 30.0% | |
| ! | GGTTCTTAGTATTTTCATAG+AGG | + | chr7.3:6558716-6558735 | MS.gene007046:intron | 30.0% |
| ! | TTCATCTAGTAATGGAACAA+AGG | - | chr7.3:6559072-6559091 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr7.3:6559466-6559485 | MS.gene007046:CDS | 30.0% |
| !!! | CAGCCTATCAATTTTTTTGA+AGG | + | chr7.3:6558313-6558332 | MS.gene007046:CDS | 30.0% |
| AAAGGAGGTAGAAAAGCTAA+AGG | + | chr7.3:6559343-6559362 | MS.gene007046:CDS | 35.0% | |
| ACTCTACATGGAATAAAGCT+TGG | + | chr7.3:6558004-6558023 | MS.gene007046:CDS | 35.0% | |
| AGAAAAGAAGTCGCAAGTTT+AGG | + | chr7.3:6559129-6559148 | MS.gene007046:CDS | 35.0% | |
| AGAAGTTTGAGAACTCTACA+TGG | + | chr7.3:6557992-6558011 | MS.gene007046:CDS | 35.0% | |
| CAAACTGCGAATATGTTTGA+GGG | + | chr7.3:6558341-6558360 | MS.gene007046:CDS | 35.0% | |
| GAAAAGAAGTCGCAAGTTTA+GGG | + | chr7.3:6559130-6559149 | MS.gene007046:CDS | 35.0% | |
| GAGAAACGACTAAATCAAGA+AGG | + | chr7.3:6558948-6558967 | MS.gene007046:CDS | 35.0% | |
| GTAAGGATCTTCAAACTTTC+TGG | + | chr7.3:6559231-6559250 | MS.gene007046:CDS | 35.0% | |
| TTCACAATAAACCCCTTGTT+AGG | - | chr7.3:6558879-6558898 | None:intergenic | 35.0% | |
| ! | AATGCAAGTCAGTTTTTCTG+GGG | + | chr7.3:6558816-6558835 | MS.gene007046:CDS | 35.0% |
| ! | CAATGCAAGTCAGTTTTTCT+GGG | + | chr7.3:6558815-6558834 | MS.gene007046:CDS | 35.0% |
| ! | TCAATGCAAGTCAGTTTTTC+TGG | + | chr7.3:6558814-6558833 | MS.gene007046:CDS | 35.0% |
| !! | TATGAATGACTTGGCTTGTA+AGG | + | chr7.3:6559214-6559233 | MS.gene007046:CDS | 35.0% |
| AAGTCGCAAGTTTAGGGAAT+GGG | + | chr7.3:6559136-6559155 | MS.gene007046:CDS | 40.0% | |
| AGCAACGTTGCAATCACAAA+AGG | + | chr7.3:6558413-6558432 | MS.gene007046:CDS | 40.0% | |
| AGCTTCATGATCCTAACAAG+GGG | + | chr7.3:6558865-6558884 | MS.gene007046:CDS | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr7.3:6559479-6559498 | MS.gene007046:CDS | 40.0% | |
| CCAAAATGTAAGTGAGCTCA+TGG | + | chr7.3:6559016-6559035 | MS.gene007046:CDS | 40.0% | |
| GAATTTCTCTCGCTTGAACA+AGG | + | chr7.3:6558086-6558105 | MS.gene007046:CDS | 40.0% | |
| GAGCTTCATGATCCTAACAA+GGG | + | chr7.3:6558864-6558883 | MS.gene007046:CDS | 40.0% | |
| GCAAACTGCGAATATGTTTG+AGG | + | chr7.3:6558340-6558359 | MS.gene007046:CDS | 40.0% | |
| GTTAGAGCCTAGTGTTCAAT+CGG | + | chr7.3:6559289-6559308 | MS.gene007046:CDS | 40.0% | |
| TAATGTGGTAGCTCAAGAGT+TGG | + | chr7.3:6559367-6559386 | MS.gene007046:CDS | 40.0% | |
| TGAGCTTCATGATCCTAACA+AGG | + | chr7.3:6558863-6558882 | MS.gene007046:CDS | 40.0% | |
| TTTATCTGTCTAAAGGTGGG+AGG | + | chr7.3:6558276-6558295 | MS.gene007046:CDS | 40.0% | |
| ! | CCATGAGCTCACTTACATTT+TGG | - | chr7.3:6559019-6559038 | None:intergenic | 40.0% |
| !! | GGCAGTAGATTTTGAAGAGA+TGG | + | chr7.3:6559460-6559479 | MS.gene007046:CDS | 40.0% |
| !! | TTCTTCTAGCTTTGGCCTTA+GGG | - | chr7.3:6558988-6559007 | None:intergenic | 40.0% |
| AAGTGAGCTCATGGATTCCA+AGG | + | chr7.3:6559025-6559044 | MS.gene007046:CDS | 45.0% | |
| AGTGAGCTCATGGATTCCAA+GGG | + | chr7.3:6559026-6559045 | MS.gene007046:CDS | 45.0% | |
| CCTAAAGCCGATTGAACACT+AGG | - | chr7.3:6559299-6559318 | None:intergenic | 45.0% | |
| CTAAGGCCAAAGCTAGAAGA+AGG | + | chr7.3:6558987-6559006 | MS.gene007046:CDS | 45.0% | |
| CTCAAGAGTTGGAATTGGAG+AGG | + | chr7.3:6559378-6559397 | MS.gene007046:CDS | 45.0% | |
| CTCGCACCTTTCTTGTCTTA+AGG | - | chr7.3:6559193-6559212 | None:intergenic | 45.0% | |
| CTGCGAATATGTTTGAGGGA+TGG | + | chr7.3:6558345-6558364 | MS.gene007046:CDS | 45.0% | |
| GAAGTCGCAAGTTTAGGGAA+TGG | + | chr7.3:6559135-6559154 | MS.gene007046:CDS | 45.0% | |
| GCTGGCACTCAATAAGTGAA+GGG | - | chr7.3:6559109-6559128 | None:intergenic | 45.0% | |
| GGATCTTCAAACTTTCTGGG+AGG | + | chr7.3:6559235-6559254 | MS.gene007046:CDS | 45.0% | |
| GGTAGCTCAAGAGTTGGAAT+TGG | + | chr7.3:6559373-6559392 | MS.gene007046:CDS | 45.0% | |
| GGTGCGAGATATGAATGACT+TGG | + | chr7.3:6559205-6559224 | MS.gene007046:CDS | 45.0% | |
| GTAACTTAACCGCTTCCCTA+AGG | + | chr7.3:6558970-6558989 | MS.gene007046:CDS | 45.0% | |
| TGATGCTGCAAGAGACTTGT+TGG | + | chr7.3:6559436-6559455 | MS.gene007046:CDS | 45.0% | |
| TGCTGGCACTCAATAAGTGA+AGG | - | chr7.3:6559110-6559129 | None:intergenic | 45.0% | |
| TTCTATGTGTCCCATACCCT+TGG | - | chr7.3:6559045-6559064 | None:intergenic | 45.0% | |
| ! | ACTTGCGACTTCTTTTCTGC+TGG | - | chr7.3:6559127-6559146 | None:intergenic | 45.0% |
| ! | CCTAGTGTTCAATCGGCTTT+AGG | + | chr7.3:6559296-6559315 | MS.gene007046:CDS | 45.0% |
| ! | CTCATGGATTCCAAGGGTAT+GGG | + | chr7.3:6559032-6559051 | MS.gene007046:CDS | 45.0% |
| !! | CTTCTTCTAGCTTTGGCCTT+AGG | - | chr7.3:6558989-6559008 | None:intergenic | 45.0% |
| !! | GCTCACTTACATTTTGGCCT+TGG | - | chr7.3:6559013-6559032 | None:intergenic | 45.0% |
| CCAAAGCTAGAAGAAGGCCA+AGG | + | chr7.3:6558993-6559012 | MS.gene007046:CDS | 50.0% | |
| GAATGGGCGTTCACTGCTTT+GGG | + | chr7.3:6559152-6559171 | MS.gene007046:CDS | 50.0% | |
| GCTCATGGATTCCAAGGGTA+TGG | + | chr7.3:6559031-6559050 | MS.gene007046:CDS | 50.0% | |
| TCTAAAGGTGGGAGGAACAC+AGG | + | chr7.3:6558284-6558303 | MS.gene007046:CDS | 50.0% | |
| ! | TACTCCGAGCCTTTTGTCCT+AGG | + | chr7.3:6558114-6558133 | MS.gene007046:CDS | 50.0% |
| !! | CCTTGGCCTTCTTCTAGCTT+TGG | - | chr7.3:6558996-6559015 | None:intergenic | 50.0% |
| !! | TAGCTTTGGCCTTAGGGAAG+CGG | - | chr7.3:6558982-6559001 | None:intergenic | 50.0% |
| !! | TGCTGCAAGAGACTTGTTGG+AGG | + | chr7.3:6559439-6559458 | MS.gene007046:CDS | 50.0% |
| CATACCATGGATAGCCGCCT+AGG | - | chr7.3:6558134-6558153 | None:intergenic | 55.0% | |
| GGAATGGGCGTTCACTGCTT+TGG | + | chr7.3:6559151-6559170 | MS.gene007046:CDS | 55.0% | |
| GGATAGCCGCCTAGGACAAA+AGG | - | chr7.3:6558126-6558145 | None:intergenic | 55.0% | |
| TTGTCCTAGGCGGCTATCCA+TGG | + | chr7.3:6558127-6558146 | MS.gene007046:CDS | 55.0% | |
| ! | TCCGAGCCTTTTGTCCTAGG+CGG | + | chr7.3:6558117-6558136 | MS.gene007046:CDS | 55.0% |
| GCCGCCTAGGACAAAAGGCT+CGG | - | chr7.3:6558121-6558140 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6557967 | 6559517 | 6557967 | ID=MS.gene007046 |
| chr7.3 | mRNA | 6557967 | 6559517 | 6557967 | ID=MS.gene007046.t1;Parent=MS.gene007046 |
| chr7.3 | exon | 6557967 | 6558148 | 6557967 | ID=MS.gene007046.t1.exon1;Parent=MS.gene007046.t1 |
| chr7.3 | CDS | 6557967 | 6558148 | 6557967 | ID=cds.MS.gene007046.t1;Parent=MS.gene007046.t1 |
| chr7.3 | exon | 6558271 | 6558434 | 6558271 | ID=MS.gene007046.t1.exon2;Parent=MS.gene007046.t1 |
| chr7.3 | CDS | 6558271 | 6558434 | 6558271 | ID=cds.MS.gene007046.t1;Parent=MS.gene007046.t1 |
| chr7.3 | exon | 6558799 | 6559517 | 6558799 | ID=MS.gene007046.t1.exon3;Parent=MS.gene007046.t1 |
| chr7.3 | CDS | 6558799 | 6559517 | 6558799 | ID=cds.MS.gene007046.t1;Parent=MS.gene007046.t1 |
| Gene Sequence |
| Protein sequence |
