Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008278.t1 | AUW37509.1 | 98.6 | 212 | 3 | 0 | 1 | 212 | 1 | 212 | 7.70E-116 | 426.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008278.t1 | Q96324 | 58.5 | 212 | 88 | 0 | 1 | 212 | 1 | 212 | 2.0e-72 | 273.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008278.t1 | A0A2Z2Z7E2 | 98.6 | 212 | 3 | 0 | 1 | 212 | 1 | 212 | 5.6e-116 | 426.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008278 | MS.gene019181 | PPI |
| MS.gene008278 | MS.gene22195 | PPI |
| MS.gene04976 | MS.gene008278 | PPI |
| MS.gene008278 | MS.gene04976 | PPI |
| MS.gene008278 | MS.gene20711 | PPI |
| MS.gene008337 | MS.gene008278 | PPI |
| MS.gene008278 | MS.gene061566 | PPI |
| MS.gene008278 | MS.gene049699 | PPI |
| MS.gene008278 | MS.gene22188 | PPI |
| MS.gene008278 | MS.gene83384 | PPI |
| MS.gene008278 | MS.gene005621 | PPI |
| MS.gene008278 | MS.gene22196 | PPI |
| MS.gene008278 | MS.gene48030 | PPI |
| MS.gene008278 | MS.gene019183 | PPI |
| MS.gene008278 | MS.gene049706 | PPI |
| MS.gene008278 | MS.gene05016 | PPI |
| MS.gene008278 | MS.gene03034 | PPI |
| MS.gene008278 | MS.gene008334 | PPI |
| MS.gene008278 | MS.gene048703 | PPI |
| MS.gene000510 | MS.gene008278 | PPI |
| MS.gene008278 | MS.gene47714 | PPI |
| MS.gene008278 | MS.gene048743 | PPI |
| MS.gene008278 | MS.gene69499 | PPI |
| MS.gene008278 | MS.gene48032 | PPI |
| MS.gene008278 | MS.gene69505 | PPI |
| MS.gene008278 | MS.gene038277 | PPI |
| MS.gene008278 | MS.gene017062 | PPI |
| MS.gene008278 | MS.gene008337 | PPI |
| MS.gene008278 | MS.gene017060 | PPI |
| MS.gene008278 | MS.gene07192 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008278.t1 | MTR_3g064700 | 98.113 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 9.73e-155 | 427 |
| MS.gene008278.t1 | MTR_3g450930 | 57.346 | 211 | 89 | 1 | 1 | 211 | 1 | 210 | 8.96e-90 | 263 |
| MS.gene008278.t1 | MTR_3g450790 | 58.768 | 211 | 86 | 1 | 1 | 211 | 1 | 210 | 1.54e-88 | 259 |
| MS.gene008278.t1 | MTR_5g090920 | 55.869 | 213 | 88 | 4 | 1 | 210 | 1 | 210 | 1.15e-80 | 240 |
| MS.gene008278.t1 | MTR_5g090910 | 52.582 | 213 | 97 | 3 | 1 | 211 | 1 | 211 | 2.09e-76 | 229 |
| MS.gene008278.t1 | MTR_1g026140 | 45.794 | 214 | 111 | 2 | 3 | 211 | 5 | 218 | 2.94e-62 | 193 |
| MS.gene008278.t1 | MTR_1g088840 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 2.38e-59 | 186 |
| MS.gene008278.t1 | MTR_1g088825 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 2.38e-59 | 186 |
| MS.gene008278.t1 | MTR_1g088845 | 44.928 | 207 | 113 | 1 | 2 | 208 | 3 | 208 | 3.62e-58 | 182 |
| MS.gene008278.t1 | MTR_1g088850 | 43.062 | 209 | 117 | 2 | 1 | 208 | 1 | 208 | 3.55e-57 | 180 |
| MS.gene008278.t1 | MTR_5g090910 | 51.351 | 148 | 69 | 2 | 66 | 211 | 8 | 154 | 2.64e-47 | 153 |
| MS.gene008278.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 8.42e-46 | 149 |
| MS.gene008278.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 7.44e-25 | 94.7 |
| MS.gene008278.t1 | MTR_8g098420 | 27.957 | 186 | 131 | 1 | 1 | 183 | 1 | 186 | 2.51e-14 | 68.9 |
| MS.gene008278.t1 | MTR_8g098420 | 26.667 | 210 | 147 | 3 | 1 | 203 | 1 | 210 | 5.49e-14 | 68.9 |
| MS.gene008278.t1 | MTR_4g134380 | 28.856 | 201 | 124 | 5 | 5 | 202 | 18 | 202 | 8.40e-13 | 65.5 |
| MS.gene008278.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 1.09e-12 | 66.6 |
| MS.gene008278.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 1.17e-12 | 66.2 |
| MS.gene008278.t1 | MTR_4g134370 | 35.849 | 106 | 67 | 1 | 5 | 110 | 18 | 122 | 1.22e-12 | 65.1 |
| MS.gene008278.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 2.12e-12 | 60.5 |
| MS.gene008278.t1 | MTR_4g134380 | 33.962 | 106 | 69 | 1 | 5 | 110 | 18 | 122 | 2.61e-12 | 63.2 |
| MS.gene008278.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 40 | 202 | 1.31e-11 | 63.2 |
| MS.gene008278.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 5 | 167 | 1.51e-11 | 63.2 |
| MS.gene008278.t1 | MTR_4g134360 | 32.787 | 122 | 77 | 3 | 4 | 125 | 15 | 131 | 2.02e-11 | 60.1 |
| MS.gene008278.t1 | MTR_8g098430 | 26.627 | 169 | 121 | 1 | 3 | 168 | 5 | 173 | 5.00e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008278.t1 | AT3G03190 | 58.491 | 212 | 88 | 0 | 1 | 212 | 1 | 212 | 3.12e-93 | 271 |
| MS.gene008278.t1 | AT5G17220 | 54.245 | 212 | 97 | 0 | 1 | 212 | 1 | 212 | 1.48e-87 | 257 |
| MS.gene008278.t1 | AT2G30870 | 52.885 | 208 | 97 | 1 | 1 | 208 | 1 | 207 | 2.19e-77 | 231 |
| MS.gene008278.t1 | AT2G30860 | 51.691 | 207 | 99 | 1 | 1 | 207 | 1 | 206 | 5.88e-74 | 223 |
| MS.gene008278.t1 | AT3G62760 | 44.286 | 210 | 115 | 2 | 1 | 209 | 1 | 209 | 1.02e-58 | 184 |
| MS.gene008278.t1 | AT1G02930 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 1.32e-56 | 178 |
| MS.gene008278.t1 | AT1G02930 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 1.32e-56 | 178 |
| MS.gene008278.t1 | AT1G02920 | 44.175 | 206 | 114 | 1 | 3 | 208 | 4 | 208 | 3.46e-56 | 177 |
| MS.gene008278.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 2.59e-54 | 174 |
| MS.gene008278.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 2.59e-54 | 174 |
| MS.gene008278.t1 | AT4G02520 | 41.905 | 210 | 118 | 2 | 3 | 209 | 4 | 212 | 1.67e-53 | 171 |
| MS.gene008278.t1 | AT2G02930 | 42.105 | 209 | 117 | 2 | 3 | 208 | 4 | 211 | 2.94e-52 | 167 |
| MS.gene008278.t1 | AT1G49860 | 45.026 | 191 | 102 | 2 | 20 | 207 | 22 | 212 | 2.14e-51 | 167 |
| MS.gene008278.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 28 | 230 | 8.78e-51 | 165 |
| MS.gene008278.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 38 | 240 | 1.01e-50 | 165 |
| MS.gene008278.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 1.03e-50 | 164 |
| MS.gene008278.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 1.03e-50 | 164 |
| MS.gene008278.t1 | AT2G30860 | 50.968 | 155 | 75 | 1 | 1 | 155 | 1 | 154 | 2.53e-50 | 161 |
| MS.gene008278.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 6.02e-49 | 160 |
| MS.gene008278.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 6.02e-49 | 160 |
| MS.gene008278.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 53 | 256 | 7.32e-49 | 160 |
| MS.gene008278.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 65 | 268 | 8.70e-49 | 161 |
| MS.gene008278.t1 | AT1G02950 | 40.972 | 144 | 83 | 2 | 64 | 206 | 60 | 202 | 1.07e-29 | 110 |
| MS.gene008278.t1 | AT5G41240 | 30.000 | 210 | 138 | 4 | 1 | 204 | 1 | 207 | 4.69e-16 | 76.6 |
| MS.gene008278.t1 | AT5G41220 | 28.571 | 203 | 138 | 3 | 1 | 197 | 1 | 202 | 2.31e-14 | 71.6 |
| MS.gene008278.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 3.35e-14 | 69.7 |
| MS.gene008278.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 3.35e-14 | 69.7 |
| MS.gene008278.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 3.35e-14 | 69.7 |
| MS.gene008278.t1 | AT5G41210 | 28.079 | 203 | 139 | 3 | 1 | 197 | 2 | 203 | 1.22e-13 | 68.2 |
| MS.gene008278.t1 | AT1G09640 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 1.26e-13 | 68.2 |
| MS.gene008278.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 8.29e-13 | 67.0 |
| MS.gene008278.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 8.29e-13 | 67.0 |
| MS.gene008278.t1 | AT1G09640 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 2.86e-12 | 65.5 |
Find 46 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.165753 | 3.1:+54876592 | MS.gene008278:CDS |
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3.1:+54874611 | None:intergenic |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.1:+54875497 | MS.gene008278:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.1:+54874704 | MS.gene008278:CDS |
| GCTGATCTTAGCCATCTTCC+TGG | 0.323812 | 3.1:+54876560 | MS.gene008278:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3.1:+54876521 | MS.gene008278:CDS |
| AACATTATATTGAAGCATAA+AGG | 0.362361 | 3.1:-54876392 | None:intergenic |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3.1:+54876679 | MS.gene008278:CDS |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.1:-54875485 | None:intergenic |
| TCAATAAGATGTTCAATTCC+AGG | 0.412097 | 3.1:-54876578 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.1:+54876593 | MS.gene008278:CDS |
| TTGTGATTTGTGTAGAATCA+AGG | 0.420564 | 3.1:+54876249 | MS.gene008278:intron |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.1:-54876674 | None:intergenic |
| AAAGTTGTGCCAAGTAAGTC+AGG | 0.462656 | 3.1:-54876314 | None:intergenic |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3.1:+54874739 | MS.gene008278:CDS |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.1:+54876660 | MS.gene008278:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.1:+54876538 | MS.gene008278:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.1:+54876651 | MS.gene008278:CDS |
| TAGAATCAAGGGCTATTGTA+AGG | 0.513820 | 3.1:+54876261 | MS.gene008278:intron |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3.1:+54876686 | MS.gene008278:CDS |
| GATGTTCAATTCCAGGAAGA+TGG | 0.515702 | 3.1:-54876571 | None:intergenic |
| TGGAATTGAACATCTTATTG+AGG | 0.518417 | 3.1:+54876580 | MS.gene008278:CDS |
| GACCGTGGTCCTGACTTACT+TGG | 0.519069 | 3.1:+54876305 | MS.gene008278:CDS |
| TGTGATTTGTGTAGAATCAA+GGG | 0.531371 | 3.1:+54876250 | MS.gene008278:intron |
| AGAAAGCTGTGGTAAATCAA+TGG | 0.531665 | 3.1:+54876342 | MS.gene008278:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.1:-54875470 | None:intergenic |
| TATATACTACCTGGAGGAGA+AGG | 0.540663 | 3.1:-54874748 | None:intergenic |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.1:+54875475 | MS.gene008278:CDS |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.1:-54876446 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.1:+54875479 | MS.gene008278:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.1:+54876673 | MS.gene008278:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.1:+54876630 | MS.gene008278:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.1:+54876634 | MS.gene008278:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.1:+54876633 | MS.gene008278:CDS |
| TAGTTCTGAACAGAAGCTAG+AGG | 0.602484 | 3.1:+54876469 | MS.gene008278:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.1:-54875471 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.1:+54876612 | MS.gene008278:CDS |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3.1:+54874640 | MS.gene008278:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3.1:-54874740 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3.1:+54874646 | MS.gene008278:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647961 | 3.1:-54874653 | None:intergenic |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3.1:+54874639 | MS.gene008278:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.694994 | 3.1:+54876331 | MS.gene008278:CDS |
| GCAGCAAAGTATGCAGACCG+TGG | 0.721309 | 3.1:+54876290 | MS.gene008278:CDS |
| TGCCAAGTAAGTCAGGACCA+CGG | 0.737821 | 3.1:-54876307 | None:intergenic |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.1:+54876495 | MS.gene008278:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATATATAATTGTATA+TGG | - | chr3.1:54875248-54875267 | None:intergenic | 10.0% |
| !!! | AGCAAATTTATTATTTTTTA+GGG | - | chr3.1:54875610-54875629 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | - | chr3.1:54875611-54875630 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATAAAAGTATG+CGG | + | chr3.1:54874949-54874968 | MS.gene008278:intron | 10.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | + | chr3.1:54875008-54875027 | MS.gene008278:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | - | chr3.1:54875660-54875679 | None:intergenic | 15.0% |
| !!! | AAAATATAGTTGAGATATTT+TGG | + | chr3.1:54874873-54874892 | MS.gene008278:intron | 15.0% |
| !!! | AAATTTAAATAGTATCGATT+AGG | - | chr3.1:54875774-54875793 | None:intergenic | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | + | chr3.1:54875051-54875070 | MS.gene008278:intron | 15.0% |
| !!! | CTTTTTTTTCTTCTTAAAAA+AGG | + | chr3.1:54874921-54874940 | MS.gene008278:intron | 15.0% |
| !! | AACATTATATTGAAGCATAA+AGG | - | chr3.1:54876395-54876414 | None:intergenic | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | + | chr3.1:54876136-54876155 | MS.gene008278:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | + | chr3.1:54876218-54876237 | MS.gene008278:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | + | chr3.1:54875007-54875026 | MS.gene008278:intron | 20.0% |
| !! | TTTATAAACTATATACTACC+TGG | - | chr3.1:54874760-54874779 | None:intergenic | 20.0% |
| !!! | AGAAAAATACAAAAGTATCT+AGG | - | chr3.1:54874792-54874811 | None:intergenic | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | + | chr3.1:54876190-54876209 | MS.gene008278:intron | 20.0% |
| !!! | GAAAAATACAAAAGTATCTA+GGG | - | chr3.1:54874791-54874810 | None:intergenic | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | + | chr3.1:54876191-54876210 | MS.gene008278:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | + | chr3.1:54876020-54876039 | MS.gene008278:intron | 20.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | + | chr3.1:54876419-54876438 | MS.gene008278:CDS | 25.0% |
| ! | GCACAAATATTTACTATGTT+CGG | - | chr3.1:54875175-54875194 | None:intergenic | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | + | chr3.1:54876054-54876073 | MS.gene008278:intron | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | - | chr3.1:54875676-54875695 | None:intergenic | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | + | chr3.1:54876418-54876437 | MS.gene008278:CDS | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | - | chr3.1:54875707-54875726 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | - | chr3.1:54875693-54875712 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | + | chr3.1:54876011-54876030 | MS.gene008278:intron | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | - | chr3.1:54875769-54875788 | None:intergenic | 25.0% |
| !!! | TTGAGATATTTTGGTTTGTT+GGG | + | chr3.1:54874882-54874901 | MS.gene008278:intron | 25.0% |
| AATAGACATTACGTCATGTT+AGG | + | chr3.1:54875880-54875899 | MS.gene008278:intron | 30.0% | |
| ATAAACTATATACTACCTGG+AGG | - | chr3.1:54874757-54874776 | None:intergenic | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | + | chr3.1:54874704-54874723 | MS.gene008278:CDS | 30.0% | |
| TCAATAAGATGTTCAATTCC+AGG | - | chr3.1:54876581-54876600 | None:intergenic | 30.0% | |
| TGAAGAGAAATGAGTAATTG+TGG | + | chr3.1:54875135-54875154 | MS.gene008278:intron | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | - | chr3.1:54875562-54875581 | None:intergenic | 30.0% | |
| TGGAATTGAACATCTTATTG+AGG | + | chr3.1:54876580-54876599 | MS.gene008278:CDS | 30.0% | |
| ! | ATTCTACCTCTTTTTCTAAG+AGG | - | chr3.1:54874676-54874695 | None:intergenic | 30.0% |
| ! | TGTGATTTGTGTAGAATCAA+GGG | + | chr3.1:54876250-54876269 | MS.gene008278:intron | 30.0% |
| ! | TTGTGATTTGTGTAGAATCA+AGG | + | chr3.1:54876249-54876268 | MS.gene008278:intron | 30.0% |
| !! | AAATAGTATCGATTAGGTAC+GGG | - | chr3.1:54875768-54875787 | None:intergenic | 30.0% |
| !! | GTCATGTTAGGCTTTTAAAA+TGG | + | chr3.1:54875892-54875911 | MS.gene008278:intron | 30.0% |
| !! | TTTTGAGTGTCGTAAATGAT+AGG | + | chr3.1:54874834-54874853 | MS.gene008278:intron | 30.0% |
| !!! | GTTGAGATATTTTGGTTTGT+TGG | + | chr3.1:54874881-54874900 | MS.gene008278:intron | 30.0% |
| !!! | TTTTTATTTTTGCAGCCCTT+TGG | + | chr3.1:54875455-54875474 | MS.gene008278:intron | 30.0% |
| AACAGATTAGCAAGCCAATA+TGG | - | chr3.1:54876071-54876090 | None:intergenic | 35.0% | |
| ACATTCTCATGAAATACGAG+TGG | - | chr3.1:54875407-54875426 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | + | chr3.1:54875511-54875530 | MS.gene008278:intron | 35.0% | |
| AGAAAGCTGTGGTAAATCAA+TGG | + | chr3.1:54876342-54876361 | MS.gene008278:CDS | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | - | chr3.1:54875956-54875975 | None:intergenic | 35.0% | |
| CATTTCTCTTCACTTAGTGT+AGG | - | chr3.1:54875127-54875146 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | + | chr3.1:54876593-54876612 | MS.gene008278:CDS | 35.0% | |
| TAGAATCAAGGGCTATTGTA+AGG | + | chr3.1:54876261-54876280 | MS.gene008278:intron | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | + | chr3.1:54876592-54876611 | MS.gene008278:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | + | chr3.1:54876679-54876698 | MS.gene008278:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | + | chr3.1:54876331-54876350 | MS.gene008278:CDS | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | - | chr3.1:54875690-54875709 | None:intergenic | 35.0% |
| !! | TCTAAAAGCACTTATCTTGC+TGG | + | chr3.1:54876521-54876540 | MS.gene008278:CDS | 35.0% |
| !!! | AGATATTTTGGTTTGTTGGG+TGG | + | chr3.1:54874885-54874904 | MS.gene008278:intron | 35.0% |
| AAAGTTGTGCCAAGTAAGTC+AGG | - | chr3.1:54876317-54876336 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | - | chr3.1:54875488-54875507 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | - | chr3.1:54875473-54875492 | None:intergenic | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | + | chr3.1:54876630-54876649 | MS.gene008278:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | + | chr3.1:54876634-54876653 | MS.gene008278:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | + | chr3.1:54875497-54875516 | MS.gene008278:CDS | 40.0% | |
| GATGTTCAATTCCAGGAAGA+TGG | - | chr3.1:54876574-54876593 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | - | chr3.1:54875474-54875493 | None:intergenic | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | - | chr3.1:54874751-54874770 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | - | chr3.1:54876449-54876468 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | + | chr3.1:54876538-54876557 | MS.gene008278:CDS | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | + | chr3.1:54876495-54876514 | MS.gene008278:CDS | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | + | chr3.1:54876612-54876631 | MS.gene008278:CDS | 40.0% | |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | + | chr3.1:54876660-54876679 | MS.gene008278:CDS | 40.0% |
| !! | AACAAAGAGAGAGCACCAAT+TGG | + | chr3.1:54875715-54875734 | MS.gene008278:intron | 40.0% |
| !! | ACAAAGAGAGAGCACCAATT+GGG | + | chr3.1:54875716-54875735 | MS.gene008278:intron | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | + | chr3.1:54876651-54876670 | MS.gene008278:CDS | 40.0% |
| !! | TAGTTCTGAACAGAAGCTAG+AGG | + | chr3.1:54876469-54876488 | MS.gene008278:CDS | 40.0% |
| CAAGTTCCAGTTGTAGAGGA+TGG | + | chr3.1:54875479-54875498 | MS.gene008278:CDS | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | + | chr3.1:54876428-54876447 | MS.gene008278:CDS | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | + | chr3.1:54876633-54876652 | MS.gene008278:CDS | 45.0% | |
| GGCTTGCCTCTTAGAAAAAG+AGG | + | chr3.1:54874667-54874686 | MS.gene008278:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | + | chr3.1:54874640-54874659 | MS.gene008278:CDS | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | - | chr3.1:54876677-54876696 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | + | chr3.1:54875475-54875494 | MS.gene008278:CDS | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | + | chr3.1:54874639-54874658 | MS.gene008278:CDS | 45.0% | |
| ! | TCTCCAGGCTTACCCATTTT+TGG | - | chr3.1:54876434-54876453 | None:intergenic | 45.0% |
| !! | GTATCGATTAGGTACGGGTT+TGG | - | chr3.1:54875763-54875782 | None:intergenic | 45.0% |
| !! | AAAAATATTATTGAATAAAA+AGG | - | chr3.1:54874817-54874836 | None:intergenic | 5.0% |
| GCCAGCTTGGAAGAAGTTGA+AGG | + | chr3.1:54876673-54876692 | MS.gene008278:CDS | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | + | chr3.1:54876560-54876579 | MS.gene008278:CDS | 50.0% | |
| TGCCAAGTAAGTCAGGACCA+CGG | - | chr3.1:54876310-54876329 | None:intergenic | 50.0% | |
| ! | TACGGGTTTGGTATCCCATG+TGG | - | chr3.1:54875751-54875770 | None:intergenic | 50.0% |
| ACCTGAGTTCCTTCTCCTCC+AGG | + | chr3.1:54874739-54874758 | MS.gene008278:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | - | chr3.1:54874743-54874762 | None:intergenic | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | + | chr3.1:54874646-54874665 | MS.gene008278:CDS | 55.0% | |
| ATTGGGACGACATGGCCACA+TGG | + | chr3.1:54875733-54875752 | MS.gene008278:intron | 55.0% | |
| GACCGTGGTCCTGACTTACT+TGG | + | chr3.1:54876305-54876324 | MS.gene008278:CDS | 55.0% | |
| GAGCACCAATTGGGACGACA+TGG | + | chr3.1:54875725-54875744 | MS.gene008278:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | + | chr3.1:54876290-54876309 | MS.gene008278:CDS | 55.0% | |
| TGTGGCCATGTCGTCCCAAT+TGG | - | chr3.1:54875733-54875752 | None:intergenic | 55.0% | |
| TTGGGACGACATGGCCACAT+GGG | + | chr3.1:54875734-54875753 | MS.gene008278:intron | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | - | chr3.1:54874656-54874675 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 54874614 | 54876706 | 54874614 | ID=MS.gene008278 |
| chr3.1 | mRNA | 54874614 | 54876706 | 54874614 | ID=MS.gene008278.t1;Parent=MS.gene008278 |
| chr3.1 | exon | 54874614 | 54874760 | 54874614 | ID=MS.gene008278.t1.exon1;Parent=MS.gene008278.t1 |
| chr3.1 | CDS | 54874614 | 54874760 | 54874614 | ID=cds.MS.gene008278.t1;Parent=MS.gene008278.t1 |
| chr3.1 | exon | 54875470 | 54875518 | 54875470 | ID=MS.gene008278.t1.exon2;Parent=MS.gene008278.t1 |
| chr3.1 | CDS | 54875470 | 54875518 | 54875470 | ID=cds.MS.gene008278.t1;Parent=MS.gene008278.t1 |
| chr3.1 | exon | 54876264 | 54876706 | 54876264 | ID=MS.gene008278.t1.exon3;Parent=MS.gene008278.t1 |
| chr3.1 | CDS | 54876264 | 54876706 | 54876264 | ID=cds.MS.gene008278.t1;Parent=MS.gene008278.t1 |
| Gene Sequence |
| Protein sequence |
