Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049699.t1 | AUW37509.1 | 96.2 | 213 | 8 | 0 | 1 | 213 | 1 | 213 | 4.80E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049699.t1 | Q96324 | 57.9 | 214 | 90 | 0 | 1 | 214 | 1 | 214 | 1.0e-71 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049699.t1 | A0A2Z2Z7E2 | 96.2 | 213 | 8 | 0 | 1 | 213 | 1 | 213 | 3.4e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049699 | MS.gene04976 | 0.818757 | 1.66E-52 | -1.69E-46 |
| MS.gene049699 | MS.gene05016 | 0.879388 | 1.30E-69 | -1.69E-46 |
| MS.gene049699 | MS.gene062729 | 0.829471 | 5.05E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69505 | MS.gene049699 | PPI |
| MS.gene04976 | MS.gene049699 | PPI |
| MS.gene038277 | MS.gene049699 | PPI |
| MS.gene008337 | MS.gene049699 | PPI |
| MS.gene049699 | MS.gene048703 | PPI |
| MS.gene20711 | MS.gene049699 | PPI |
| MS.gene008334 | MS.gene049699 | PPI |
| MS.gene049699 | MS.gene83384 | PPI |
| MS.gene008278 | MS.gene049699 | PPI |
| MS.gene061566 | MS.gene049699 | PPI |
| MS.gene049699 | MS.gene48030 | PPI |
| MS.gene019181 | MS.gene049699 | PPI |
| MS.gene049699 | MS.gene48032 | PPI |
| MS.gene049699 | MS.gene049706 | PPI |
| MS.gene049699 | MS.gene017062 | PPI |
| MS.gene049699 | MS.gene05016 | PPI |
| MS.gene017060 | MS.gene049699 | PPI |
| MS.gene019183 | MS.gene049699 | PPI |
| MS.gene22195 | MS.gene049699 | PPI |
| MS.gene03034 | MS.gene049699 | PPI |
| MS.gene048743 | MS.gene049699 | PPI |
| MS.gene69499 | MS.gene049699 | PPI |
| MS.gene22188 | MS.gene049699 | PPI |
| MS.gene000510 | MS.gene049699 | PPI |
| MS.gene47714 | MS.gene049699 | PPI |
| MS.gene22196 | MS.gene049699 | PPI |
| MS.gene005621 | MS.gene049699 | PPI |
| MS.gene049699 | MS.gene07192 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049699.t1 | MTR_3g064700 | 97.653 | 213 | 5 | 0 | 1 | 213 | 1 | 213 | 3.08e-155 | 428 |
| MS.gene049699.t1 | MTR_3g450930 | 57.944 | 214 | 89 | 1 | 1 | 214 | 1 | 213 | 8.30e-91 | 266 |
| MS.gene049699.t1 | MTR_3g450790 | 58.411 | 214 | 88 | 1 | 1 | 214 | 1 | 213 | 1.71e-88 | 259 |
| MS.gene049699.t1 | MTR_5g090920 | 56.338 | 213 | 87 | 4 | 1 | 210 | 1 | 210 | 1.95e-80 | 239 |
| MS.gene049699.t1 | MTR_5g090910 | 53.023 | 215 | 97 | 3 | 1 | 213 | 1 | 213 | 1.84e-76 | 229 |
| MS.gene049699.t1 | MTR_1g026140 | 45.327 | 214 | 112 | 2 | 3 | 211 | 5 | 218 | 3.71e-61 | 191 |
| MS.gene049699.t1 | MTR_1g088840 | 43.478 | 207 | 116 | 1 | 2 | 208 | 3 | 208 | 2.47e-58 | 183 |
| MS.gene049699.t1 | MTR_1g088825 | 43.478 | 207 | 116 | 1 | 2 | 208 | 3 | 208 | 2.47e-58 | 183 |
| MS.gene049699.t1 | MTR_1g088845 | 44.444 | 207 | 114 | 1 | 2 | 208 | 3 | 208 | 2.56e-57 | 181 |
| MS.gene049699.t1 | MTR_1g088850 | 42.584 | 209 | 118 | 2 | 1 | 208 | 1 | 208 | 4.36e-56 | 177 |
| MS.gene049699.t1 | MTR_5g090910 | 51.333 | 150 | 70 | 2 | 66 | 213 | 8 | 156 | 4.62e-47 | 152 |
| MS.gene049699.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 2.53e-45 | 148 |
| MS.gene049699.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 2.05e-24 | 93.6 |
| MS.gene049699.t1 | MTR_8g098420 | 27.419 | 186 | 132 | 1 | 1 | 183 | 1 | 186 | 1.76e-13 | 66.6 |
| MS.gene049699.t1 | MTR_8g098420 | 26.190 | 210 | 148 | 3 | 1 | 203 | 1 | 210 | 3.54e-13 | 67.0 |
| MS.gene049699.t1 | MTR_4g134380 | 28.358 | 201 | 125 | 5 | 5 | 202 | 18 | 202 | 2.45e-12 | 64.3 |
| MS.gene049699.t1 | MTR_2g005570 | 29.070 | 172 | 109 | 6 | 40 | 208 | 42 | 203 | 3.39e-12 | 65.1 |
| MS.gene049699.t1 | MTR_2g005570 | 29.070 | 172 | 109 | 6 | 40 | 208 | 42 | 203 | 3.91e-12 | 65.1 |
| MS.gene049699.t1 | MTR_4g134370 | 34.906 | 106 | 68 | 1 | 5 | 110 | 18 | 122 | 4.65e-12 | 63.5 |
| MS.gene049699.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 5.20e-12 | 59.7 |
| MS.gene049699.t1 | MTR_4g134380 | 33.019 | 106 | 70 | 1 | 5 | 110 | 18 | 122 | 7.85e-12 | 62.0 |
| MS.gene049699.t1 | MTR_4g134770 | 32.576 | 132 | 75 | 4 | 40 | 167 | 40 | 161 | 4.05e-11 | 62.0 |
| MS.gene049699.t1 | MTR_4g134770 | 32.576 | 132 | 75 | 4 | 40 | 167 | 5 | 126 | 5.49e-11 | 61.6 |
| MS.gene049699.t1 | MTR_4g134360 | 31.967 | 122 | 78 | 3 | 4 | 125 | 15 | 131 | 7.95e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049699.t1 | AT3G03190 | 58.411 | 214 | 89 | 0 | 1 | 214 | 1 | 214 | 6.56e-94 | 273 |
| MS.gene049699.t1 | AT5G17220 | 54.206 | 214 | 98 | 0 | 1 | 214 | 1 | 214 | 3.14e-89 | 261 |
| MS.gene049699.t1 | AT2G30870 | 52.804 | 214 | 98 | 2 | 1 | 214 | 1 | 211 | 8.33e-77 | 230 |
| MS.gene049699.t1 | AT2G30860 | 51.869 | 214 | 100 | 2 | 1 | 214 | 1 | 211 | 5.83e-74 | 223 |
| MS.gene049699.t1 | AT3G62760 | 43.810 | 210 | 116 | 2 | 1 | 209 | 1 | 209 | 1.74e-57 | 181 |
| MS.gene049699.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 2.01e-55 | 176 |
| MS.gene049699.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 2.01e-55 | 176 |
| MS.gene049699.t1 | AT2G47730 | 43.810 | 210 | 116 | 2 | 5 | 213 | 54 | 262 | 5.55e-55 | 176 |
| MS.gene049699.t1 | AT2G47730 | 43.810 | 210 | 116 | 2 | 5 | 213 | 54 | 262 | 5.55e-55 | 176 |
| MS.gene049699.t1 | AT1G02920 | 43.689 | 206 | 115 | 1 | 3 | 208 | 4 | 208 | 8.81e-55 | 174 |
| MS.gene049699.t1 | AT4G02520 | 41.429 | 210 | 119 | 2 | 3 | 209 | 4 | 212 | 2.49e-52 | 168 |
| MS.gene049699.t1 | AT2G02930 | 41.627 | 209 | 118 | 2 | 3 | 208 | 4 | 211 | 5.61e-51 | 164 |
| MS.gene049699.t1 | AT2G30860 | 51.613 | 155 | 74 | 1 | 1 | 155 | 1 | 154 | 2.39e-50 | 161 |
| MS.gene049699.t1 | AT1G49860 | 44.503 | 191 | 103 | 2 | 20 | 207 | 22 | 212 | 2.65e-50 | 164 |
| MS.gene049699.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 28 | 230 | 8.67e-50 | 162 |
| MS.gene049699.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 8.94e-50 | 162 |
| MS.gene049699.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 8.94e-50 | 162 |
| MS.gene049699.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 38 | 240 | 1.49e-49 | 162 |
| MS.gene049699.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 1.16e-47 | 157 |
| MS.gene049699.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 1.16e-47 | 157 |
| MS.gene049699.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 53 | 256 | 1.26e-47 | 157 |
| MS.gene049699.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 65 | 268 | 1.64e-47 | 157 |
| MS.gene049699.t1 | AT1G02950 | 40.972 | 144 | 83 | 2 | 64 | 206 | 60 | 202 | 3.53e-29 | 108 |
| MS.gene049699.t1 | AT5G41240 | 28.708 | 209 | 142 | 3 | 1 | 204 | 1 | 207 | 2.44e-15 | 74.7 |
| MS.gene049699.t1 | AT1G77290 | 24.444 | 225 | 138 | 6 | 15 | 208 | 13 | 236 | 7.24e-14 | 68.9 |
| MS.gene049699.t1 | AT1G77290 | 24.444 | 225 | 138 | 6 | 15 | 208 | 13 | 236 | 7.24e-14 | 68.9 |
| MS.gene049699.t1 | AT1G77290 | 24.444 | 225 | 138 | 6 | 15 | 208 | 13 | 236 | 7.24e-14 | 68.9 |
| MS.gene049699.t1 | AT1G09640 | 28.272 | 191 | 124 | 4 | 27 | 211 | 22 | 205 | 5.04e-13 | 66.6 |
| MS.gene049699.t1 | AT5G41220 | 26.733 | 202 | 143 | 2 | 1 | 197 | 1 | 202 | 5.53e-13 | 67.8 |
| MS.gene049699.t1 | AT1G57720 | 27.326 | 172 | 113 | 4 | 40 | 208 | 40 | 202 | 2.09e-12 | 65.9 |
| MS.gene049699.t1 | AT1G57720 | 27.326 | 172 | 113 | 4 | 40 | 208 | 40 | 202 | 2.09e-12 | 65.9 |
| MS.gene049699.t1 | AT5G41210 | 26.238 | 202 | 144 | 2 | 1 | 197 | 2 | 203 | 3.54e-12 | 63.9 |
| MS.gene049699.t1 | AT1G09640 | 27.660 | 188 | 123 | 4 | 27 | 208 | 22 | 202 | 7.54e-12 | 64.3 |
Find 46 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.186477 | 3.3:-58272920 | MS.gene049699:CDS |
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3.3:-58275112 | MS.gene049699:CDS |
| CTTAGTCATCTTCCTGGAAT+TGG | 0.292656 | 3.3:-58272946 | MS.gene049699:CDS |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.3:-58273983 | MS.gene049699:intron |
| GCTGATCTTAGTCATCTTCC+TGG | 0.315615 | 3.3:-58272952 | MS.gene049699:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.3:-58275019 | MS.gene049699:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3.3:-58272991 | MS.gene049699:CDS |
| AACATTATATTGAAGCATAA+AGG | 0.362361 | 3.3:+58273120 | None:intergenic |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.383127 | 3.3:-58272833 | MS.gene049699:CDS |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.3:+58273995 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.3:-58272919 | MS.gene049699:CDS |
| TTGTGATTTGTGTAGAATCA+AGG | 0.420564 | 3.3:-58273263 | MS.gene049699:intron |
| GAGGGTGATGGCTTGCCTCT+TGG | 0.421689 | 3.3:-58275065 | MS.gene049699:CDS |
| AAAGTTGTGCCAAGTAGGTC+TGG | 0.431789 | 3.3:+58273198 | None:intergenic |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.3:+58272838 | None:intergenic |
| CTTCTAAAGTTGTGCCAAGT+AGG | 0.448360 | 3.3:+58273193 | None:intergenic |
| TCAATAAGATGTCCAATTCC+AGG | 0.451011 | 3.3:+58272934 | None:intergenic |
| AGAAAGCTGTGGTGAATCAA+TGG | 0.489459 | 3.3:-58273170 | MS.gene049699:CDS |
| ACCTGAGTATCTTCTCCTCC+AGG | 0.504475 | 3.3:-58274984 | MS.gene049699:intron |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.3:-58272852 | MS.gene049699:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.3:-58272974 | MS.gene049699:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.3:-58272861 | MS.gene049699:CDS |
| TAGAATCAAGGGCTATTGTA+AGG | 0.513820 | 3.3:-58273251 | MS.gene049699:CDS |
| TGTGATTTGTGTAGAATCAA+GGG | 0.531371 | 3.3:-58273262 | MS.gene049699:intron |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.3:+58274010 | None:intergenic |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.3:-58274005 | MS.gene049699:CDS |
| AGCTTGTCCTCAGAGGGTGA+TGG | 0.555673 | 3.3:-58275077 | MS.gene049699:CDS |
| GACCGTGGTCCAGACCTACT+TGG | 0.556380 | 3.3:-58273207 | MS.gene049699:CDS |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.3:+58273066 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.3:-58274001 | MS.gene049699:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.3:-58272839 | MS.gene049699:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.3:-58272882 | MS.gene049699:CDS |
| TGGAATTGGACATCTTATTG+AGG | 0.594707 | 3.3:-58272932 | MS.gene049699:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.3:-58272878 | MS.gene049699:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.3:-58272879 | MS.gene049699:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.3:+58274009 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.3:-58272900 | MS.gene049699:CDS |
| TAATGCAGCTTGTCCTCAGA+GGG | 0.616468 | 3.3:-58275083 | MS.gene049699:CDS |
| ACCTGGAGGAGAAGATACTC+AGG | 0.621803 | 3.3:+58274983 | None:intergenic |
| TAGTTCTGAACATAAGCTAG+AGG | 0.629016 | 3.3:-58273043 | MS.gene049699:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647043 | 3.3:+58275070 | None:intergenic |
| TTAATGCAGCTTGTCCTCAG+AGG | 0.663267 | 3.3:-58275084 | MS.gene049699:CDS |
| TGCCAAGTAGGTCTGGACCA+CGG | 0.686129 | 3.3:+58273205 | None:intergenic |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.697603 | 3.3:-58273181 | MS.gene049699:CDS |
| GCAGCAAAGTATGCAGACCG+TGG | 0.728704 | 3.3:-58273222 | MS.gene049699:CDS |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.3:-58273017 | MS.gene049699:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGGTAAAAAATAATTA+AGG | + | chr3.3:58274115-58274134 | None:intergenic | 10.0% |
| !!! | AGCAAAATTTATTATTTTTA+AGG | + | chr3.3:58274065-58274084 | None:intergenic | 10.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | + | chr3.3:58273022-58273041 | None:intergenic | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | - | chr3.3:58273378-58273397 | MS.gene049699:intron | 15.0% |
| !!! | ACTTTTTTTATAAAAGTATG+CGG | - | chr3.3:58273319-58273338 | MS.gene049699:intron | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | - | chr3.3:58273424-58273443 | MS.gene049699:intron | 15.0% |
| !! | AAAAAGTAATGATTACATGA+TGG | + | chr3.3:58273892-58273911 | None:intergenic | 20.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | - | chr3.3:58273272-58273291 | MS.gene049699:intron | 20.0% |
| !! | AACATTATATTGAAGCATAA+AGG | + | chr3.3:58274811-58274830 | None:intergenic | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | - | chr3.3:58274552-58274571 | MS.gene049699:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | - | chr3.3:58274634-58274653 | MS.gene049699:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | - | chr3.3:58273377-58273396 | MS.gene049699:intron | 20.0% |
| !! | TATTGGTGGAATATAATTAA+AGG | + | chr3.3:58274131-58274150 | None:intergenic | 20.0% |
| !! | TTTATAAACTATATACTACC+TGG | + | chr3.3:58272965-58272984 | None:intergenic | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | - | chr3.3:58274606-58274625 | MS.gene049699:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | - | chr3.3:58274607-58274626 | MS.gene049699:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | - | chr3.3:58274436-58274455 | MS.gene049699:intron | 20.0% |
| ! | AAAAAATTCAAGTCTCACAT+CGG | + | chr3.3:58273685-58273704 | None:intergenic | 25.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | - | chr3.3:58274835-58274854 | MS.gene049699:intron | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | - | chr3.3:58274470-58274489 | MS.gene049699:intron | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | - | chr3.3:58274834-58274853 | MS.gene049699:intron | 25.0% |
| !! | AATTTTGTCTGTGTTGAAAT+TGG | - | chr3.3:58273577-58273596 | MS.gene049699:intron | 25.0% |
| !! | ATTTTGTCTGTGTTGAAATT+GGG | - | chr3.3:58273578-58273597 | MS.gene049699:intron | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | + | chr3.3:58274162-58274181 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | + | chr3.3:58274148-58274167 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | - | chr3.3:58274427-58274446 | MS.gene049699:intron | 25.0% |
| !!! | CTCAACTATATTTTTATGAG+CGG | + | chr3.3:58273266-58273285 | None:intergenic | 25.0% |
| !!! | GACTTTAAATAGTATCGATT+AGG | + | chr3.3:58274218-58274237 | None:intergenic | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | + | chr3.3:58274213-58274232 | None:intergenic | 25.0% |
| AATAGACATTACGTCATGTT+AGG | - | chr3.3:58274313-58274332 | MS.gene049699:intron | 30.0% | |
| ACAGACAAAATTCAACATGT+TGG | + | chr3.3:58273569-58273588 | None:intergenic | 30.0% | |
| ACATTCTCATTAAATACGAG+TGG | + | chr3.3:58273853-58273872 | None:intergenic | 30.0% | |
| ATAAACTATATACTACCTGG+AGG | + | chr3.3:58272962-58272981 | None:intergenic | 30.0% | |
| CATTTCATTTCACTTAGTGT+AGG | + | chr3.3:58273501-58273520 | None:intergenic | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | - | chr3.3:58272909-58272928 | MS.gene049699:CDS | 30.0% | |
| ! | TGTGATTTGTGTAGAATCAA+GGG | - | chr3.3:58274666-58274685 | MS.gene049699:intron | 30.0% |
| ! | TTGTGATTTGTGTAGAATCA+AGG | - | chr3.3:58274665-58274684 | MS.gene049699:intron | 30.0% |
| ! | TTTTGTCTGTGTTGAAATTG+GGG | - | chr3.3:58273579-58273598 | MS.gene049699:intron | 30.0% |
| !! | AAATAGTATCGATTAGGTAC+GGG | + | chr3.3:58274212-58274231 | None:intergenic | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | + | chr3.3:58272997-58273016 | None:intergenic | 30.0% |
| !! | GAAAGATACAAAAGCATCTA+GGG | + | chr3.3:58272996-58273015 | None:intergenic | 30.0% |
| !! | GTCATGTTAGGCTTTTAAAA+TGG | - | chr3.3:58274325-58274344 | MS.gene049699:intron | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | - | chr3.3:58273280-58273299 | MS.gene049699:intron | 30.0% |
| !!! | AGCTTTCTAAGGCTAAATTT+TGG | + | chr3.3:58274361-58274380 | None:intergenic | 30.0% |
| AACAGATTAGCAAGCCAATA+TGG | + | chr3.3:58274487-58274506 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | - | chr3.3:58273959-58273978 | MS.gene049699:intron | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | + | chr3.3:58274372-58274391 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | - | chr3.3:58275009-58275028 | MS.gene049699:CDS | 35.0% | |
| GTAAAAACTATGAGCTGCTA+TGG | + | chr3.3:58273147-58273166 | None:intergenic | 35.0% | |
| TAGAATCAAGGGCTATTGTA+AGG | - | chr3.3:58274677-58274696 | MS.gene049699:intron | 35.0% | |
| TAGAGAAGGAAATTATTCCG+AGG | + | chr3.3:58273234-58273253 | None:intergenic | 35.0% | |
| TCAATAAGATGTCCAATTCC+AGG | + | chr3.3:58274997-58275016 | None:intergenic | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | - | chr3.3:58275008-58275027 | MS.gene049699:CDS | 35.0% | |
| TGCGAAAAATAATTCCCGAA+AGG | - | chr3.3:58273100-58273119 | MS.gene049699:CDS | 35.0% | |
| TGGAATTGGACATCTTATTG+AGG | - | chr3.3:58274996-58275015 | MS.gene049699:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | - | chr3.3:58275095-58275114 | MS.gene049699:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | - | chr3.3:58274747-58274766 | MS.gene049699:intron | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | + | chr3.3:58273199-58273218 | None:intergenic | 35.0% |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | + | chr3.3:58272881-58272900 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | + | chr3.3:58273198-58273217 | None:intergenic | 35.0% |
| ! | GTGTCGTTAATGATAAGCAA+CGG | - | chr3.3:58273045-58273064 | MS.gene049699:CDS | 35.0% |
| !! | AGATATCTTGGTTTTTCGGA+TGG | - | chr3.3:58273284-58273303 | MS.gene049699:intron | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | + | chr3.3:58274145-58274164 | None:intergenic | 35.0% |
| !! | GGGAATTATTTTTCGCATCA+AGG | + | chr3.3:58273097-58273116 | None:intergenic | 35.0% |
| !! | TAGTTCTGAACATAAGCTAG+AGG | - | chr3.3:58274885-58274904 | MS.gene049699:intron | 35.0% |
| !! | TCTAAAAGCACTTATCTTGC+TGG | - | chr3.3:58274937-58274956 | MS.gene049699:intron | 35.0% |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | + | chr3.3:58273190-58273209 | None:intergenic | 35.0% |
| !!! | TTACTTTTTTTGCAGCCCTT+TGG | - | chr3.3:58273903-58273922 | MS.gene049699:intron | 35.0% |
| AAATCACCATCCTCTACAAC+TGG | + | chr3.3:58273936-58273955 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | + | chr3.3:58273921-58273940 | None:intergenic | 40.0% | |
| AGAAAGCTGTGGTGAATCAA+TGG | - | chr3.3:58274758-58274777 | MS.gene049699:intron | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | - | chr3.3:58275046-58275065 | MS.gene049699:CDS | 40.0% | |
| ATCCGATGTGAGACTCTTAA+CGG | - | chr3.3:58273743-58273762 | MS.gene049699:intron | 40.0% | |
| CTTAGTCATCTTCCTGGAAT+TGG | - | chr3.3:58274982-58275001 | MS.gene049699:intron | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | - | chr3.3:58275050-58275069 | MS.gene049699:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | - | chr3.3:58273945-58273964 | MS.gene049699:intron | 40.0% | |
| GATTAGCGGAAATACAAGGA+TGG | + | chr3.3:58273176-58273195 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | + | chr3.3:58273922-58273941 | None:intergenic | 40.0% | |
| TATGTGTGTCGCAAACCTTT+CGG | + | chr3.3:58273118-58273137 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | + | chr3.3:58274865-58274884 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | - | chr3.3:58274954-58274973 | MS.gene049699:intron | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | - | chr3.3:58274911-58274930 | MS.gene049699:intron | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | - | chr3.3:58275028-58275047 | MS.gene049699:CDS | 40.0% | |
| TTAAGAGTCTCACATCGGAT+AGG | + | chr3.3:58273743-58273762 | None:intergenic | 40.0% | |
| ! | CAATTTGTTCGCAATAGCCT+CGG | - | chr3.3:58273214-58273233 | MS.gene049699:CDS | 40.0% |
| ! | TTGGGATTAGCGGAAATACA+AGG | + | chr3.3:58273180-58273199 | None:intergenic | 40.0% |
| !! | AAACAAAGAGAGAGCACCAA+TGG | - | chr3.3:58274169-58274188 | MS.gene049699:intron | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | - | chr3.3:58275076-58275095 | MS.gene049699:CDS | 40.0% |
| !! | AGCGGTGTTATTGATAGAGA+AGG | + | chr3.3:58273248-58273267 | None:intergenic | 40.0% |
| !! | CTTCTAAAGTTGTGCCAAGT+AGG | + | chr3.3:58274738-58274757 | None:intergenic | 40.0% |
| !! | GGATAGGAGAAAAGAGTGTT+GGG | + | chr3.3:58273727-58273746 | None:intergenic | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | - | chr3.3:58275067-58275086 | MS.gene049699:CDS | 40.0% |
| AAAGTTGTGCCAAGTAGGTC+TGG | + | chr3.3:58274733-58274752 | None:intergenic | 45.0% | |
| ACACTCATCACCTCACAAGT+CGG | + | chr3.3:58273625-58273644 | None:intergenic | 45.0% | |
| AGCGGAAATACAAGGATGGT+TGG | + | chr3.3:58273172-58273191 | None:intergenic | 45.0% | |
| ATGTGTGTCGCAAACCTTTC+GGG | + | chr3.3:58273117-58273136 | None:intergenic | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | - | chr3.3:58273927-58273946 | MS.gene049699:intron | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | - | chr3.3:58274844-58274863 | MS.gene049699:intron | 45.0% | |
| GACCGTTAAGAGTCTCACAT+CGG | + | chr3.3:58273748-58273767 | None:intergenic | 45.0% | |
| GCTGATCTTAGTCATCTTCC+TGG | - | chr3.3:58274976-58274995 | MS.gene049699:intron | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | - | chr3.3:58275049-58275068 | MS.gene049699:CDS | 45.0% | |
| TAATGCAGCTTGTCCTCAGA+GGG | - | chr3.3:58272845-58272864 | MS.gene049699:CDS | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | + | chr3.3:58275093-58275112 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | - | chr3.3:58273923-58273942 | MS.gene049699:intron | 45.0% | |
| TTAATGCAGCTTGTCCTCAG+AGG | - | chr3.3:58272844-58272863 | MS.gene049699:CDS | 45.0% | |
| ! | CGGATAGGAGAAAAGAGTGT+TGG | + | chr3.3:58273728-58273747 | None:intergenic | 45.0% |
| ! | TATCGATTAGGTACGGGATG+TGG | + | chr3.3:58274206-58274225 | None:intergenic | 45.0% |
| ! | TCTCCAGGCTTACCCATTTT+TGG | + | chr3.3:58274850-58274869 | None:intergenic | 45.0% |
| !! | CATCACAAAACCGACTTGTG+AGG | - | chr3.3:58273612-58273631 | MS.gene049699:intron | 45.0% |
| ACCTGAGTATCTTCTCCTCC+AGG | - | chr3.3:58272944-58272963 | MS.gene049699:CDS | 50.0% | |
| ACCTGGAGGAGAAGATACTC+AGG | + | chr3.3:58272948-58272967 | None:intergenic | 50.0% | |
| GCCAGCTTGGAAGAAGTTGA+AGG | - | chr3.3:58275089-58275108 | MS.gene049699:CDS | 50.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | - | chr3.3:58272872-58272891 | MS.gene049699:CDS | 50.0% | |
| ! | TTGGGCGTGAGAGAGTGTAT+TGG | + | chr3.3:58273709-58273728 | None:intergenic | 50.0% |
| AGCTTGTCCTCAGAGGGTGA+TGG | - | chr3.3:58272851-58272870 | MS.gene049699:CDS | 55.0% | |
| GAGCACCAATGGAGACGACA+TGG | - | chr3.3:58274180-58274199 | MS.gene049699:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | - | chr3.3:58274706-58274725 | MS.gene049699:intron | 55.0% | |
| TGCCAAGTAGGTCTGGACCA+CGG | + | chr3.3:58274726-58274745 | None:intergenic | 55.0% | |
| TGTGGCCATGTCGTCTCCAT+TGG | + | chr3.3:58274188-58274207 | None:intergenic | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | + | chr3.3:58272861-58272880 | None:intergenic | 60.0% | |
| GACCGTGGTCCAGACCTACT+TGG | - | chr3.3:58274721-58274740 | MS.gene049699:intron | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | - | chr3.3:58272863-58272882 | MS.gene049699:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58272819 | 58275131 | 58272819 | ID=MS.gene049699 |
| chr3.3 | mRNA | 58272819 | 58275131 | 58272819 | ID=MS.gene049699.t1;Parent=MS.gene049699 |
| chr3.3 | exon | 58274985 | 58275131 | 58274985 | ID=MS.gene049699.t1.exon1;Parent=MS.gene049699.t1 |
| chr3.3 | CDS | 58274985 | 58275131 | 58274985 | ID=cds.MS.gene049699.t1;Parent=MS.gene049699.t1 |
| chr3.3 | exon | 58273984 | 58274032 | 58273984 | ID=MS.gene049699.t1.exon2;Parent=MS.gene049699.t1 |
| chr3.3 | CDS | 58273984 | 58274032 | 58273984 | ID=cds.MS.gene049699.t1;Parent=MS.gene049699.t1 |
| chr3.3 | exon | 58272819 | 58273270 | 58272819 | ID=MS.gene049699.t1.exon3;Parent=MS.gene049699.t1 |
| chr3.3 | CDS | 58272819 | 58273270 | 58272819 | ID=cds.MS.gene049699.t1;Parent=MS.gene049699.t1 |
| Gene Sequence |
| Protein sequence |
