Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048703.t1 | AUW37509.1 | 98.1 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 1.70E-115 | 425.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048703.t1 | Q96324 | 58.0 | 212 | 89 | 0 | 1 | 212 | 1 | 212 | 4.5e-72 | 272.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048703.t1 | A0A2Z2Z7E2 | 98.1 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 1.2e-115 | 425.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048743 | MS.gene048703 | PPI |
| MS.gene69499 | MS.gene048703 | PPI |
| MS.gene22188 | MS.gene048703 | PPI |
| MS.gene000510 | MS.gene048703 | PPI |
| MS.gene47714 | MS.gene048703 | PPI |
| MS.gene22196 | MS.gene048703 | PPI |
| MS.gene048703 | MS.gene049706 | PPI |
| MS.gene048703 | MS.gene05016 | PPI |
| MS.gene48030 | MS.gene048703 | PPI |
| MS.gene69505 | MS.gene048703 | PPI |
| MS.gene04976 | MS.gene048703 | PPI |
| MS.gene017062 | MS.gene048703 | PPI |
| MS.gene049699 | MS.gene048703 | PPI |
| MS.gene048703 | MS.gene48032 | PPI |
| MS.gene038277 | MS.gene048703 | PPI |
| MS.gene005621 | MS.gene048703 | PPI |
| MS.gene048703 | MS.gene07192 | PPI |
| MS.gene008337 | MS.gene048703 | PPI |
| MS.gene83384 | MS.gene048703 | PPI |
| MS.gene20711 | MS.gene048703 | PPI |
| MS.gene008334 | MS.gene048703 | PPI |
| MS.gene008278 | MS.gene048703 | PPI |
| MS.gene061566 | MS.gene048703 | PPI |
| MS.gene019181 | MS.gene048703 | PPI |
| MS.gene017060 | MS.gene048703 | PPI |
| MS.gene019183 | MS.gene048703 | PPI |
| MS.gene22195 | MS.gene048703 | PPI |
| MS.gene03034 | MS.gene048703 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048703.t1 | MTR_3g064700 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 2.45e-154 | 426 |
| MS.gene048703.t1 | MTR_3g450930 | 56.872 | 211 | 90 | 1 | 1 | 211 | 1 | 210 | 2.71e-89 | 261 |
| MS.gene048703.t1 | MTR_3g450790 | 58.294 | 211 | 87 | 1 | 1 | 211 | 1 | 210 | 4.70e-88 | 258 |
| MS.gene048703.t1 | MTR_5g090920 | 55.399 | 213 | 89 | 4 | 1 | 210 | 1 | 210 | 3.39e-80 | 239 |
| MS.gene048703.t1 | MTR_5g090910 | 52.113 | 213 | 98 | 3 | 1 | 211 | 1 | 211 | 5.98e-76 | 228 |
| MS.gene048703.t1 | MTR_1g026140 | 45.327 | 214 | 112 | 2 | 3 | 211 | 5 | 218 | 1.06e-61 | 192 |
| MS.gene048703.t1 | MTR_1g088840 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 4.06e-59 | 185 |
| MS.gene048703.t1 | MTR_1g088825 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 4.06e-59 | 185 |
| MS.gene048703.t1 | MTR_1g088845 | 44.928 | 207 | 113 | 1 | 2 | 208 | 3 | 208 | 6.65e-58 | 182 |
| MS.gene048703.t1 | MTR_1g088850 | 43.062 | 209 | 117 | 2 | 1 | 208 | 1 | 208 | 2.45e-57 | 181 |
| MS.gene048703.t1 | MTR_5g090910 | 51.351 | 148 | 69 | 2 | 66 | 211 | 8 | 154 | 2.79e-47 | 153 |
| MS.gene048703.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 7.48e-46 | 149 |
| MS.gene048703.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 6.90e-25 | 94.7 |
| MS.gene048703.t1 | MTR_8g098420 | 27.957 | 186 | 131 | 1 | 1 | 183 | 1 | 186 | 1.50e-14 | 69.3 |
| MS.gene048703.t1 | MTR_8g098420 | 26.667 | 210 | 147 | 3 | 1 | 203 | 1 | 210 | 3.75e-14 | 69.3 |
| MS.gene048703.t1 | MTR_4g134380 | 28.856 | 201 | 124 | 5 | 5 | 202 | 18 | 202 | 7.68e-13 | 65.5 |
| MS.gene048703.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 1.06e-12 | 66.6 |
| MS.gene048703.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 1.07e-12 | 66.6 |
| MS.gene048703.t1 | MTR_4g134370 | 35.849 | 106 | 67 | 1 | 5 | 110 | 18 | 122 | 1.15e-12 | 65.1 |
| MS.gene048703.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 2.08e-12 | 60.5 |
| MS.gene048703.t1 | MTR_4g134380 | 33.962 | 106 | 69 | 1 | 5 | 110 | 18 | 122 | 2.53e-12 | 63.2 |
| MS.gene048703.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 40 | 202 | 1.28e-11 | 63.2 |
| MS.gene048703.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 5 | 167 | 1.54e-11 | 63.2 |
| MS.gene048703.t1 | MTR_4g134360 | 32.787 | 122 | 77 | 3 | 4 | 125 | 15 | 131 | 1.96e-11 | 60.1 |
| MS.gene048703.t1 | MTR_8g098430 | 26.627 | 169 | 121 | 1 | 3 | 168 | 5 | 173 | 3.31e-11 | 61.2 |
| MS.gene048703.t1 | MTR_3g088635 | 21.162 | 241 | 151 | 5 | 3 | 208 | 1 | 237 | 7.22e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048703.t1 | AT3G03190 | 58.019 | 212 | 89 | 0 | 1 | 212 | 1 | 212 | 1.12e-92 | 270 |
| MS.gene048703.t1 | AT5G17220 | 53.774 | 212 | 98 | 0 | 1 | 212 | 1 | 212 | 4.43e-87 | 256 |
| MS.gene048703.t1 | AT2G30870 | 52.885 | 208 | 97 | 1 | 1 | 208 | 1 | 207 | 1.16e-77 | 232 |
| MS.gene048703.t1 | AT2G30860 | 51.691 | 207 | 99 | 1 | 1 | 207 | 1 | 206 | 3.68e-74 | 223 |
| MS.gene048703.t1 | AT3G62760 | 44.762 | 210 | 114 | 2 | 1 | 209 | 1 | 209 | 1.88e-59 | 186 |
| MS.gene048703.t1 | AT1G02930 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 1.84e-56 | 178 |
| MS.gene048703.t1 | AT1G02930 | 43.689 | 206 | 114 | 2 | 3 | 208 | 4 | 207 | 1.84e-56 | 178 |
| MS.gene048703.t1 | AT1G02920 | 44.175 | 206 | 114 | 1 | 3 | 208 | 4 | 208 | 5.46e-56 | 177 |
| MS.gene048703.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 2.45e-54 | 174 |
| MS.gene048703.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 2.45e-54 | 174 |
| MS.gene048703.t1 | AT4G02520 | 41.905 | 210 | 118 | 2 | 3 | 209 | 4 | 212 | 2.72e-53 | 170 |
| MS.gene048703.t1 | AT2G02930 | 42.105 | 209 | 117 | 2 | 3 | 208 | 4 | 211 | 4.07e-52 | 167 |
| MS.gene048703.t1 | AT1G49860 | 45.026 | 191 | 102 | 2 | 20 | 207 | 22 | 212 | 2.52e-51 | 166 |
| MS.gene048703.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 28 | 230 | 7.55e-51 | 165 |
| MS.gene048703.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 8.29e-51 | 165 |
| MS.gene048703.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 26 | 228 | 8.29e-51 | 165 |
| MS.gene048703.t1 | AT1G02950 | 43.137 | 204 | 114 | 2 | 4 | 206 | 38 | 240 | 1.14e-50 | 165 |
| MS.gene048703.t1 | AT2G30860 | 50.968 | 155 | 75 | 1 | 1 | 155 | 1 | 154 | 1.68e-50 | 161 |
| MS.gene048703.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 6.78e-49 | 160 |
| MS.gene048703.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 6.78e-49 | 160 |
| MS.gene048703.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 53 | 256 | 7.09e-49 | 160 |
| MS.gene048703.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 65 | 268 | 8.70e-49 | 161 |
| MS.gene048703.t1 | AT1G02950 | 40.972 | 144 | 83 | 2 | 64 | 206 | 60 | 202 | 1.01e-29 | 110 |
| MS.gene048703.t1 | AT5G41240 | 30.000 | 210 | 138 | 4 | 1 | 204 | 1 | 207 | 3.77e-16 | 76.6 |
| MS.gene048703.t1 | AT1G77290 | 24.473 | 237 | 147 | 6 | 3 | 208 | 1 | 236 | 6.60e-15 | 71.6 |
| MS.gene048703.t1 | AT1G77290 | 24.473 | 237 | 147 | 6 | 3 | 208 | 1 | 236 | 6.60e-15 | 71.6 |
| MS.gene048703.t1 | AT1G77290 | 24.473 | 237 | 147 | 6 | 3 | 208 | 1 | 236 | 6.60e-15 | 71.6 |
| MS.gene048703.t1 | AT5G41220 | 28.571 | 203 | 138 | 3 | 1 | 197 | 1 | 202 | 1.60e-14 | 72.0 |
| MS.gene048703.t1 | AT5G41210 | 28.079 | 203 | 139 | 3 | 1 | 197 | 2 | 203 | 8.69e-14 | 68.6 |
| MS.gene048703.t1 | AT1G09640 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 1.16e-13 | 68.2 |
| MS.gene048703.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 8.29e-13 | 67.0 |
| MS.gene048703.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 8.29e-13 | 67.0 |
| MS.gene048703.t1 | AT1G09640 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 2.72e-12 | 65.5 |
| MS.gene048703.t1 | AT2G02390 | 31.776 | 107 | 71 | 1 | 3 | 109 | 9 | 113 | 7.02e-11 | 59.7 |
Find 46 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.165753 | 3.2:+60937529 | MS.gene048703:CDS |
| AATATGGTGATGAAAGTTTA+TGG | 0.232463 | 3.2:+60935546 | None:intergenic |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.2:+60936434 | MS.gene048703:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.2:+60935639 | MS.gene048703:CDS |
| GCTGATCTTAGCCATCTTCC+TGG | 0.323812 | 3.2:+60937497 | MS.gene048703:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3.2:+60937458 | MS.gene048703:CDS |
| AACATTATATTGAAGCATAA+AGG | 0.362361 | 3.2:-60937329 | None:intergenic |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3.2:+60937616 | MS.gene048703:CDS |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.2:-60936422 | None:intergenic |
| TCAATAAGATGTTCAATTCC+AGG | 0.412097 | 3.2:-60937515 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.2:+60937530 | MS.gene048703:CDS |
| TTGTGATTTGTGTAGAATCA+AGG | 0.420564 | 3.2:+60937186 | MS.gene048703:intron |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.2:-60937611 | None:intergenic |
| AAAGTTGTGCCAAGTAAGTC+AGG | 0.462656 | 3.2:-60937251 | None:intergenic |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3.2:+60935674 | MS.gene048703:CDS |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.2:+60937597 | MS.gene048703:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.2:+60937475 | MS.gene048703:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.2:+60937588 | MS.gene048703:CDS |
| TAGAATCAAGGGCTATTGTA+AGG | 0.513820 | 3.2:+60937198 | MS.gene048703:intron |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3.2:+60937623 | MS.gene048703:CDS |
| GATGTTCAATTCCAGGAAGA+TGG | 0.515702 | 3.2:-60937508 | None:intergenic |
| TGGAATTGAACATCTTATTG+AGG | 0.518417 | 3.2:+60937517 | MS.gene048703:CDS |
| GACCGTGGTCCTGACTTACT+TGG | 0.519069 | 3.2:+60937242 | MS.gene048703:CDS |
| TGTGATTTGTGTAGAATCAA+GGG | 0.531371 | 3.2:+60937187 | MS.gene048703:intron |
| AGAAAGCTGTGGTAAATCAA+TGG | 0.531665 | 3.2:+60937279 | MS.gene048703:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.2:-60936407 | None:intergenic |
| TATATACTACCTGGAGGAGA+AGG | 0.540663 | 3.2:-60935683 | None:intergenic |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.2:+60936412 | MS.gene048703:CDS |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.2:-60937383 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.2:+60936416 | MS.gene048703:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.2:+60937610 | MS.gene048703:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.2:+60937567 | MS.gene048703:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.2:+60937571 | MS.gene048703:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.2:+60937570 | MS.gene048703:CDS |
| TAGTTCTGAACAGAAGCTAG+AGG | 0.602484 | 3.2:+60937406 | MS.gene048703:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.2:-60936408 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.2:+60937549 | MS.gene048703:CDS |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3.2:+60935575 | MS.gene048703:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3.2:-60935675 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3.2:+60935581 | MS.gene048703:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647961 | 3.2:-60935588 | None:intergenic |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3.2:+60935574 | MS.gene048703:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.694994 | 3.2:+60937268 | MS.gene048703:CDS |
| GCAGCAAAGTATGCAGACCG+TGG | 0.721309 | 3.2:+60937227 | MS.gene048703:CDS |
| TGCCAAGTAAGTCAGGACCA+CGG | 0.737821 | 3.2:-60937244 | None:intergenic |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.2:+60937432 | MS.gene048703:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATATATAATTGTATA+TGG | - | chr3.2:60936185-60936204 | None:intergenic | 10.0% |
| !!! | AGCAAATTTATTATTTTTTA+GGG | - | chr3.2:60936547-60936566 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | - | chr3.2:60936548-60936567 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATAAAAGTATG+CGG | + | chr3.2:60935886-60935905 | MS.gene048703:intron | 10.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | + | chr3.2:60935945-60935964 | MS.gene048703:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | - | chr3.2:60936597-60936616 | None:intergenic | 15.0% |
| !!! | AAAATATAGTTGAGATATTT+TGG | + | chr3.2:60935808-60935827 | MS.gene048703:intron | 15.0% |
| !!! | AAATTTAAATAGTATCGATT+AGG | - | chr3.2:60936711-60936730 | None:intergenic | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | + | chr3.2:60935988-60936007 | MS.gene048703:intron | 15.0% |
| !!! | CTTTTTTTTCTTCTTAAAAA+AGG | + | chr3.2:60935856-60935875 | MS.gene048703:intron | 15.0% |
| !! | AACATTATATTGAAGCATAA+AGG | - | chr3.2:60937332-60937351 | None:intergenic | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | + | chr3.2:60937073-60937092 | MS.gene048703:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | + | chr3.2:60937155-60937174 | MS.gene048703:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | + | chr3.2:60935944-60935963 | MS.gene048703:intron | 20.0% |
| !! | TTTATAAACTATATACTACC+TGG | - | chr3.2:60935695-60935714 | None:intergenic | 20.0% |
| !!! | AGAAAAATACAAAAGTATCT+AGG | - | chr3.2:60935727-60935746 | None:intergenic | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | + | chr3.2:60937127-60937146 | MS.gene048703:intron | 20.0% |
| !!! | GAAAAATACAAAAGTATCTA+GGG | - | chr3.2:60935726-60935745 | None:intergenic | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | + | chr3.2:60937128-60937147 | MS.gene048703:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | + | chr3.2:60936957-60936976 | MS.gene048703:intron | 20.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | + | chr3.2:60937356-60937375 | MS.gene048703:CDS | 25.0% |
| ! | GCACAAATATTTACTATGTT+CGG | - | chr3.2:60936112-60936131 | None:intergenic | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | + | chr3.2:60936991-60937010 | MS.gene048703:intron | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | - | chr3.2:60936613-60936632 | None:intergenic | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | + | chr3.2:60937355-60937374 | MS.gene048703:CDS | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | - | chr3.2:60936644-60936663 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | - | chr3.2:60936630-60936649 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | + | chr3.2:60936948-60936967 | MS.gene048703:intron | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | - | chr3.2:60936706-60936725 | None:intergenic | 25.0% |
| !!! | TTGAGATATTTTGGTTTGTT+GGG | + | chr3.2:60935817-60935836 | MS.gene048703:intron | 25.0% |
| AATAGACATTACGTCATGTT+AGG | + | chr3.2:60936817-60936836 | MS.gene048703:intron | 30.0% | |
| ATAAACTATATACTACCTGG+AGG | - | chr3.2:60935692-60935711 | None:intergenic | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | + | chr3.2:60935639-60935658 | MS.gene048703:CDS | 30.0% | |
| TCAATAAGATGTTCAATTCC+AGG | - | chr3.2:60937518-60937537 | None:intergenic | 30.0% | |
| TGAAGAGAAATGAGTAATTG+TGG | + | chr3.2:60936072-60936091 | MS.gene048703:intron | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | - | chr3.2:60936499-60936518 | None:intergenic | 30.0% | |
| TGGAATTGAACATCTTATTG+AGG | + | chr3.2:60937517-60937536 | MS.gene048703:CDS | 30.0% | |
| ! | ATTCTACCTCTTTTTCTAAG+AGG | - | chr3.2:60935611-60935630 | None:intergenic | 30.0% |
| ! | TGTGATTTGTGTAGAATCAA+GGG | + | chr3.2:60937187-60937206 | MS.gene048703:intron | 30.0% |
| ! | TTGTGATTTGTGTAGAATCA+AGG | + | chr3.2:60937186-60937205 | MS.gene048703:intron | 30.0% |
| !! | AAATAGTATCGATTAGGTAC+GGG | - | chr3.2:60936705-60936724 | None:intergenic | 30.0% |
| !! | GTCATGTTAGGCTTTTAAAA+TGG | + | chr3.2:60936829-60936848 | MS.gene048703:intron | 30.0% |
| !! | TTTTGAGTGTCGTAAATGAT+AGG | + | chr3.2:60935769-60935788 | MS.gene048703:intron | 30.0% |
| !!! | GTTGAGATATTTTGGTTTGT+TGG | + | chr3.2:60935816-60935835 | MS.gene048703:intron | 30.0% |
| !!! | TTTTTATTTTTGCAGCCCTT+TGG | + | chr3.2:60936392-60936411 | MS.gene048703:intron | 30.0% |
| AACAGATTAGCAAGCCAATA+TGG | - | chr3.2:60937008-60937027 | None:intergenic | 35.0% | |
| ACATTCTCATGAAATACGAG+TGG | - | chr3.2:60936344-60936363 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | + | chr3.2:60936448-60936467 | MS.gene048703:intron | 35.0% | |
| AGAAAGCTGTGGTAAATCAA+TGG | + | chr3.2:60937279-60937298 | MS.gene048703:CDS | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | - | chr3.2:60936893-60936912 | None:intergenic | 35.0% | |
| CATTTCTCTTCACTTAGTGT+AGG | - | chr3.2:60936064-60936083 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | + | chr3.2:60937530-60937549 | MS.gene048703:CDS | 35.0% | |
| TAGAATCAAGGGCTATTGTA+AGG | + | chr3.2:60937198-60937217 | MS.gene048703:intron | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | + | chr3.2:60937529-60937548 | MS.gene048703:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | + | chr3.2:60937616-60937635 | MS.gene048703:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | + | chr3.2:60937268-60937287 | MS.gene048703:CDS | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | - | chr3.2:60936627-60936646 | None:intergenic | 35.0% |
| !! | TCTAAAAGCACTTATCTTGC+TGG | + | chr3.2:60937458-60937477 | MS.gene048703:CDS | 35.0% |
| !!! | AGATATTTTGGTTTGTTGGG+TGG | + | chr3.2:60935820-60935839 | MS.gene048703:intron | 35.0% |
| AAAGTTGTGCCAAGTAAGTC+AGG | - | chr3.2:60937254-60937273 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | - | chr3.2:60936425-60936444 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | - | chr3.2:60936410-60936429 | None:intergenic | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | + | chr3.2:60937567-60937586 | MS.gene048703:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | + | chr3.2:60937571-60937590 | MS.gene048703:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | + | chr3.2:60936434-60936453 | MS.gene048703:CDS | 40.0% | |
| GATGTTCAATTCCAGGAAGA+TGG | - | chr3.2:60937511-60937530 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | - | chr3.2:60936411-60936430 | None:intergenic | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | - | chr3.2:60935686-60935705 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | - | chr3.2:60937386-60937405 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | + | chr3.2:60937475-60937494 | MS.gene048703:CDS | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | + | chr3.2:60937432-60937451 | MS.gene048703:CDS | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | + | chr3.2:60937549-60937568 | MS.gene048703:CDS | 40.0% | |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | + | chr3.2:60937597-60937616 | MS.gene048703:CDS | 40.0% |
| !! | AACAAAGAGAGAGCACCAAT+TGG | + | chr3.2:60936652-60936671 | MS.gene048703:intron | 40.0% |
| !! | ACAAAGAGAGAGCACCAATT+GGG | + | chr3.2:60936653-60936672 | MS.gene048703:intron | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | + | chr3.2:60937588-60937607 | MS.gene048703:CDS | 40.0% |
| !! | TAGTTCTGAACAGAAGCTAG+AGG | + | chr3.2:60937406-60937425 | MS.gene048703:CDS | 40.0% |
| CAAGTTCCAGTTGTAGAGGA+TGG | + | chr3.2:60936416-60936435 | MS.gene048703:CDS | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | + | chr3.2:60937365-60937384 | MS.gene048703:CDS | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | + | chr3.2:60937570-60937589 | MS.gene048703:CDS | 45.0% | |
| GGCTTGCCTCTTAGAAAAAG+AGG | + | chr3.2:60935602-60935621 | MS.gene048703:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | + | chr3.2:60935575-60935594 | MS.gene048703:CDS | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | - | chr3.2:60937614-60937633 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | + | chr3.2:60936412-60936431 | MS.gene048703:CDS | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | + | chr3.2:60935574-60935593 | MS.gene048703:CDS | 45.0% | |
| ! | TCTCCAGGCTTACCCATTTT+TGG | - | chr3.2:60937371-60937390 | None:intergenic | 45.0% |
| !! | GTATCGATTAGGTACGGGTT+TGG | - | chr3.2:60936700-60936719 | None:intergenic | 45.0% |
| !! | AAAAATATTATTGAATAAAA+AGG | - | chr3.2:60935752-60935771 | None:intergenic | 5.0% |
| GCCAGCTTGGAAGAAGTTGA+AGG | + | chr3.2:60937610-60937629 | MS.gene048703:CDS | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | + | chr3.2:60937497-60937516 | MS.gene048703:CDS | 50.0% | |
| TGCCAAGTAAGTCAGGACCA+CGG | - | chr3.2:60937247-60937266 | None:intergenic | 50.0% | |
| ! | TACGGGTTTGGTATCCCATG+TGG | - | chr3.2:60936688-60936707 | None:intergenic | 50.0% |
| ACCTGAGTTCCTTCTCCTCC+AGG | + | chr3.2:60935674-60935693 | MS.gene048703:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | - | chr3.2:60935678-60935697 | None:intergenic | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | + | chr3.2:60935581-60935600 | MS.gene048703:CDS | 55.0% | |
| ATTGGGACGACATGGCCACA+TGG | + | chr3.2:60936670-60936689 | MS.gene048703:intron | 55.0% | |
| GACCGTGGTCCTGACTTACT+TGG | + | chr3.2:60937242-60937261 | MS.gene048703:CDS | 55.0% | |
| GAGCACCAATTGGGACGACA+TGG | + | chr3.2:60936662-60936681 | MS.gene048703:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | + | chr3.2:60937227-60937246 | MS.gene048703:CDS | 55.0% | |
| TGTGGCCATGTCGTCCCAAT+TGG | - | chr3.2:60936670-60936689 | None:intergenic | 55.0% | |
| TTGGGACGACATGGCCACAT+GGG | + | chr3.2:60936671-60936690 | MS.gene048703:intron | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | - | chr3.2:60935591-60935610 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60935549 | 60937643 | 60935549 | ID=MS.gene048703 |
| chr3.2 | mRNA | 60935549 | 60937643 | 60935549 | ID=MS.gene048703.t1;Parent=MS.gene048703 |
| chr3.2 | exon | 60935549 | 60935695 | 60935549 | ID=MS.gene048703.t1.exon1;Parent=MS.gene048703.t1 |
| chr3.2 | CDS | 60935549 | 60935695 | 60935549 | ID=cds.MS.gene048703.t1;Parent=MS.gene048703.t1 |
| chr3.2 | exon | 60936407 | 60936455 | 60936407 | ID=MS.gene048703.t1.exon2;Parent=MS.gene048703.t1 |
| chr3.2 | CDS | 60936407 | 60936455 | 60936407 | ID=cds.MS.gene048703.t1;Parent=MS.gene048703.t1 |
| chr3.2 | exon | 60937201 | 60937643 | 60937201 | ID=MS.gene048703.t1.exon3;Parent=MS.gene048703.t1 |
| chr3.2 | CDS | 60937201 | 60937643 | 60937201 | ID=cds.MS.gene048703.t1;Parent=MS.gene048703.t1 |
| Gene Sequence |
| Protein sequence |
