Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008337.t1 | AUW37509.1 | 98.6 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 1.20E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008337.t1 | Q96324 | 58.5 | 212 | 88 | 0 | 1 | 212 | 1 | 212 | 4.5e-72 | 272.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008337.t1 | A0A2Z2Z7E2 | 98.6 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 8.7e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008337 | MS.gene69499 | PPI |
| MS.gene008337 | MS.gene69505 | PPI |
| MS.gene008337 | MS.gene04976 | PPI |
| MS.gene008337 | MS.gene017060 | PPI |
| MS.gene008337 | MS.gene07192 | PPI |
| MS.gene008337 | MS.gene019181 | PPI |
| MS.gene008337 | MS.gene061566 | PPI |
| MS.gene008337 | MS.gene049699 | PPI |
| MS.gene008337 | MS.gene008278 | PPI |
| MS.gene008337 | MS.gene20711 | PPI |
| MS.gene008337 | MS.gene005621 | PPI |
| MS.gene008337 | MS.gene22196 | PPI |
| MS.gene000510 | MS.gene008337 | PPI |
| MS.gene008337 | MS.gene48030 | PPI |
| MS.gene04976 | MS.gene008337 | PPI |
| MS.gene008337 | MS.gene019183 | PPI |
| MS.gene008337 | MS.gene22188 | PPI |
| MS.gene008337 | MS.gene008334 | PPI |
| MS.gene008337 | MS.gene048703 | PPI |
| MS.gene008337 | MS.gene83384 | PPI |
| MS.gene008337 | MS.gene47714 | PPI |
| MS.gene008337 | MS.gene048743 | PPI |
| MS.gene008337 | MS.gene48032 | PPI |
| MS.gene008337 | MS.gene049706 | PPI |
| MS.gene008337 | MS.gene038277 | PPI |
| MS.gene008337 | MS.gene017062 | PPI |
| MS.gene008337 | MS.gene05016 | PPI |
| MS.gene008337 | MS.gene03034 | PPI |
| MS.gene008337 | MS.gene22195 | PPI |
| MS.gene008278 | MS.gene008337 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008337.t1 | MTR_3g064700 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 4.69e-156 | 431 |
| MS.gene008337.t1 | MTR_3g450930 | 56.808 | 213 | 91 | 1 | 1 | 213 | 1 | 212 | 2.36e-89 | 262 |
| MS.gene008337.t1 | MTR_3g450790 | 58.216 | 213 | 88 | 1 | 1 | 213 | 1 | 212 | 4.78e-88 | 258 |
| MS.gene008337.t1 | MTR_5g090920 | 55.399 | 213 | 89 | 4 | 1 | 210 | 1 | 210 | 1.17e-79 | 237 |
| MS.gene008337.t1 | MTR_5g090910 | 52.093 | 215 | 99 | 3 | 1 | 213 | 1 | 213 | 7.63e-76 | 228 |
| MS.gene008337.t1 | MTR_1g026140 | 46.262 | 214 | 110 | 2 | 3 | 211 | 5 | 218 | 9.50e-63 | 194 |
| MS.gene008337.t1 | MTR_1g088840 | 44.444 | 207 | 114 | 1 | 2 | 208 | 3 | 208 | 1.01e-59 | 186 |
| MS.gene008337.t1 | MTR_1g088825 | 44.444 | 207 | 114 | 1 | 2 | 208 | 3 | 208 | 1.01e-59 | 186 |
| MS.gene008337.t1 | MTR_1g088845 | 44.444 | 207 | 114 | 1 | 2 | 208 | 3 | 208 | 1.49e-57 | 181 |
| MS.gene008337.t1 | MTR_1g088850 | 43.062 | 209 | 117 | 2 | 1 | 208 | 1 | 208 | 5.50e-57 | 180 |
| MS.gene008337.t1 | MTR_5g090910 | 50.667 | 150 | 71 | 2 | 66 | 213 | 8 | 156 | 9.14e-47 | 152 |
| MS.gene008337.t1 | MTR_1g088840 | 45.062 | 162 | 88 | 1 | 47 | 208 | 1 | 161 | 3.21e-46 | 150 |
| MS.gene008337.t1 | MTR_1g088840 | 43.636 | 110 | 61 | 1 | 99 | 208 | 4 | 112 | 2.42e-25 | 95.9 |
| MS.gene008337.t1 | MTR_8g098420 | 27.957 | 186 | 131 | 2 | 1 | 183 | 1 | 186 | 6.38e-14 | 67.8 |
| MS.gene008337.t1 | MTR_8g098420 | 28.070 | 171 | 120 | 2 | 1 | 168 | 1 | 171 | 1.45e-13 | 67.8 |
| MS.gene008337.t1 | MTR_4g134380 | 29.353 | 201 | 123 | 5 | 5 | 202 | 18 | 202 | 2.01e-13 | 67.0 |
| MS.gene008337.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 7.34e-13 | 67.0 |
| MS.gene008337.t1 | MTR_1g492670 | 47.619 | 63 | 32 | 1 | 146 | 208 | 2 | 63 | 8.09e-13 | 61.6 |
| MS.gene008337.t1 | MTR_2g005570 | 29.651 | 172 | 108 | 6 | 40 | 208 | 42 | 203 | 8.15e-13 | 67.0 |
| MS.gene008337.t1 | MTR_4g134370 | 35.849 | 106 | 67 | 1 | 5 | 110 | 18 | 122 | 1.28e-12 | 65.1 |
| MS.gene008337.t1 | MTR_4g134380 | 33.962 | 106 | 69 | 1 | 5 | 110 | 18 | 122 | 2.55e-12 | 63.2 |
| MS.gene008337.t1 | MTR_4g134770 | 33.333 | 132 | 74 | 4 | 40 | 167 | 40 | 161 | 1.24e-11 | 63.5 |
| MS.gene008337.t1 | MTR_3g088635 | 22.271 | 229 | 139 | 5 | 15 | 208 | 13 | 237 | 1.31e-11 | 62.8 |
| MS.gene008337.t1 | MTR_4g134770 | 33.333 | 132 | 74 | 4 | 40 | 167 | 5 | 126 | 1.73e-11 | 62.8 |
| MS.gene008337.t1 | MTR_4g134360 | 32.787 | 122 | 77 | 3 | 4 | 125 | 15 | 131 | 2.16e-11 | 59.7 |
| MS.gene008337.t1 | MTR_8g098430 | 26.437 | 174 | 115 | 2 | 3 | 168 | 5 | 173 | 5.50e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008337.t1 | AT3G03190 | 58.491 | 212 | 88 | 0 | 1 | 212 | 1 | 212 | 6.97e-93 | 271 |
| MS.gene008337.t1 | AT5G17220 | 54.717 | 212 | 96 | 0 | 1 | 212 | 1 | 212 | 7.70e-89 | 261 |
| MS.gene008337.t1 | AT2G30870 | 51.923 | 208 | 99 | 1 | 1 | 208 | 1 | 207 | 9.95e-76 | 227 |
| MS.gene008337.t1 | AT2G30860 | 51.208 | 207 | 100 | 1 | 1 | 207 | 1 | 206 | 6.18e-73 | 220 |
| MS.gene008337.t1 | AT3G62760 | 43.810 | 210 | 116 | 2 | 1 | 209 | 1 | 209 | 4.63e-58 | 182 |
| MS.gene008337.t1 | AT1G02930 | 44.175 | 206 | 113 | 2 | 3 | 208 | 4 | 207 | 8.92e-57 | 179 |
| MS.gene008337.t1 | AT1G02930 | 44.175 | 206 | 113 | 2 | 3 | 208 | 4 | 207 | 8.92e-57 | 179 |
| MS.gene008337.t1 | AT1G02920 | 44.660 | 206 | 113 | 1 | 3 | 208 | 4 | 208 | 2.82e-56 | 177 |
| MS.gene008337.t1 | AT2G47730 | 43.333 | 210 | 117 | 2 | 5 | 213 | 54 | 262 | 6.52e-54 | 173 |
| MS.gene008337.t1 | AT2G47730 | 43.333 | 210 | 117 | 2 | 5 | 213 | 54 | 262 | 6.52e-54 | 173 |
| MS.gene008337.t1 | AT4G02520 | 42.381 | 210 | 117 | 2 | 3 | 209 | 4 | 212 | 1.11e-53 | 171 |
| MS.gene008337.t1 | AT2G02930 | 42.584 | 209 | 116 | 2 | 3 | 208 | 4 | 211 | 1.97e-52 | 168 |
| MS.gene008337.t1 | AT1G49860 | 45.550 | 191 | 101 | 2 | 20 | 207 | 22 | 212 | 1.04e-51 | 167 |
| MS.gene008337.t1 | AT1G02950 | 43.627 | 204 | 113 | 2 | 4 | 206 | 28 | 230 | 4.12e-51 | 166 |
| MS.gene008337.t1 | AT1G02950 | 43.627 | 204 | 113 | 2 | 4 | 206 | 26 | 228 | 4.53e-51 | 166 |
| MS.gene008337.t1 | AT1G02950 | 43.627 | 204 | 113 | 2 | 4 | 206 | 26 | 228 | 4.53e-51 | 166 |
| MS.gene008337.t1 | AT1G02950 | 43.627 | 204 | 113 | 2 | 4 | 206 | 38 | 240 | 5.91e-51 | 166 |
| MS.gene008337.t1 | AT2G30860 | 50.323 | 155 | 76 | 1 | 1 | 155 | 1 | 154 | 1.22e-49 | 159 |
| MS.gene008337.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 1.76e-48 | 159 |
| MS.gene008337.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 40 | 243 | 1.76e-48 | 159 |
| MS.gene008337.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 53 | 256 | 2.11e-48 | 159 |
| MS.gene008337.t1 | AT1G02940 | 39.512 | 205 | 122 | 2 | 4 | 207 | 65 | 268 | 2.82e-48 | 159 |
| MS.gene008337.t1 | AT1G02950 | 41.667 | 144 | 82 | 2 | 64 | 206 | 60 | 202 | 4.99e-30 | 110 |
| MS.gene008337.t1 | AT5G41240 | 29.187 | 209 | 141 | 3 | 1 | 204 | 1 | 207 | 9.80e-16 | 75.5 |
| MS.gene008337.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 1.89e-14 | 70.5 |
| MS.gene008337.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 1.89e-14 | 70.5 |
| MS.gene008337.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 1.89e-14 | 70.5 |
| MS.gene008337.t1 | AT5G41220 | 27.723 | 202 | 141 | 2 | 1 | 197 | 1 | 202 | 3.95e-14 | 70.9 |
| MS.gene008337.t1 | AT1G09640 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 1.33e-13 | 68.2 |
| MS.gene008337.t1 | AT5G41210 | 26.733 | 202 | 143 | 2 | 1 | 197 | 2 | 203 | 3.05e-13 | 67.0 |
| MS.gene008337.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 7.62e-13 | 67.0 |
| MS.gene008337.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 7.62e-13 | 67.0 |
| MS.gene008337.t1 | AT1G09640 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 2.73e-12 | 65.5 |
| MS.gene008337.t1 | AT2G02390 | 31.776 | 107 | 71 | 1 | 3 | 109 | 9 | 113 | 9.46e-11 | 59.3 |
Find 47 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.186477 | 3.1:-54006774 | MS.gene008337:CDS |
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3.1:-54009762 | MS.gene008337:CDS |
| CTTAGTCATCTTCCAGGAAT+TGG | 0.298480 | 3.1:-54006800 | MS.gene008337:CDS |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.1:-54007902 | MS.gene008337:intron |
| TCTGAAAGCACTTATCTTGC+TGG | 0.312483 | 3.1:-54006845 | MS.gene008337:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.1:-54009669 | MS.gene008337:CDS |
| GCTGATCTTAGTCATCTTCC+AGG | 0.347588 | 3.1:-54006806 | MS.gene008337:CDS |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.383127 | 3.1:-54006687 | MS.gene008337:CDS |
| TCAATAAGATGTCCAATTCC+TGG | 0.405869 | 3.1:+54006788 | None:intergenic |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.1:+54007914 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.1:-54006773 | MS.gene008337:CDS |
| GAGGGTGATGGCTTGCCTCT+TGG | 0.421689 | 3.1:-54009715 | MS.gene008337:CDS |
| AACATGATATTGAAGCATAA+AGG | 0.427566 | 3.1:+54006974 | None:intergenic |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.1:+54006692 | None:intergenic |
| CTTCTAAAGTTGTGCCAAGT+AGG | 0.455796 | 3.1:+54007047 | None:intergenic |
| AAAGTTGTGCCAAGTAGGTC+AGG | 0.467376 | 3.1:+54007052 | None:intergenic |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3.1:-54009634 | MS.gene008337:intron |
| AGAAAGCTGTGGTGAATCAA+TGG | 0.489459 | 3.1:-54007024 | MS.gene008337:CDS |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.1:-54006706 | MS.gene008337:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.1:-54006828 | MS.gene008337:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.1:-54006715 | MS.gene008337:CDS |
| TAGAATCGAGGGCTATTGTA+AGG | 0.513820 | 3.1:-54007105 | MS.gene008337:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.1:+54007929 | None:intergenic |
| TTGTGATTTGTGTAGAATCG+AGG | 0.534676 | 3.1:-54007117 | MS.gene008337:intron |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.1:-54007924 | MS.gene008337:CDS |
| GACCGTGGTCCTGACCTACT+TGG | 0.545257 | 3.1:-54007061 | MS.gene008337:CDS |
| TGTGATTTGTGTAGAATCGA+GGG | 0.552442 | 3.1:-54007116 | MS.gene008337:intron |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.1:+54006920 | None:intergenic |
| TATATACTACCTGGAGGAGA+AGG | 0.563596 | 3.1:+54009625 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.1:-54007920 | MS.gene008337:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.1:-54006693 | MS.gene008337:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.1:-54006736 | MS.gene008337:CDS |
| AGGAATTGGACATCTTATTG+AGG | 0.595893 | 3.1:-54006786 | MS.gene008337:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.1:-54006732 | MS.gene008337:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.1:-54006733 | MS.gene008337:CDS |
| TAGTTCTGAACAGAAGCTAG+AGG | 0.602484 | 3.1:-54006897 | MS.gene008337:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.1:+54007928 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.1:-54006754 | MS.gene008337:CDS |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3.1:-54009733 | MS.gene008337:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3.1:+54009633 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3.1:-54009727 | MS.gene008337:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647043 | 3.1:+54009720 | None:intergenic |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3.1:-54009734 | MS.gene008337:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.697603 | 3.1:-54007035 | MS.gene008337:CDS |
| TGCCAAGTAGGTCAGGACCA+CGG | 0.707978 | 3.1:+54007059 | None:intergenic |
| GCAGCAAAGTATGCAGACCG+TGG | 0.721309 | 3.1:-54007076 | MS.gene008337:CDS |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.1:-54006871 | MS.gene008337:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAAAATAAAATAAAA+TGG | + | chr3.1:54008590-54008609 | None:intergenic | 10.0% |
| !!! | AGCAAAATTTATTATTTTTA+AGG | + | chr3.1:54008656-54008675 | None:intergenic | 10.0% |
| !!! | ATGATACAAATTTTTTTATA+AGG | + | chr3.1:54007166-54007185 | None:intergenic | 10.0% |
| !! | AAAAAATAATGATTACATGA+TGG | + | chr3.1:54008484-54008503 | None:intergenic | 15.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | + | chr3.1:54006886-54006905 | None:intergenic | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | - | chr3.1:54007955-54007974 | MS.gene008337:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | + | chr3.1:54008706-54008725 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTCTTCTTAAAAA+AGG | - | chr3.1:54007869-54007888 | MS.gene008337:intron | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | - | chr3.1:54007998-54008017 | MS.gene008337:intron | 15.0% |
| !!! | ATAATAAAGACTTTTTTTTG+AGG | + | chr3.1:54008845-54008864 | None:intergenic | 15.0% |
| !!! | TAATAAAGACTTTTTTTTGA+GGG | + | chr3.1:54008844-54008863 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTATAAAAGTATG+CGG | - | chr3.1:54007896-54007915 | MS.gene008337:intron | 15.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | - | chr3.1:54007822-54007841 | MS.gene008337:intron | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | - | chr3.1:54009188-54009207 | MS.gene008337:intron | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | - | chr3.1:54009290-54009309 | MS.gene008337:intron | 20.0% |
| !! | CATAATATGAAAAATTGTAG+AGG | + | chr3.1:54007199-54007218 | None:intergenic | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | - | chr3.1:54007954-54007973 | MS.gene008337:intron | 20.0% |
| !! | GTATGAATATTATCAAGAAT+CGG | + | chr3.1:54007327-54007346 | None:intergenic | 20.0% |
| !! | TAAACTATATATATACTACC+TGG | + | chr3.1:54006825-54006844 | None:intergenic | 20.0% |
| !!! | AAATAATTTGTGATAAGTGT+GGG | - | chr3.1:54007396-54007415 | MS.gene008337:intron | 20.0% |
| !!! | AAATATATCTTTGTTGCTTT+TGG | - | chr3.1:54007552-54007571 | MS.gene008337:intron | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | - | chr3.1:54009242-54009261 | MS.gene008337:intron | 20.0% |
| !!! | AGTTTCTAAAAATTTAGTGT+AGG | - | chr3.1:54007469-54007488 | MS.gene008337:intron | 20.0% |
| !!! | ATCACAAATTATTTCTCTTT+TGG | + | chr3.1:54007390-54007409 | None:intergenic | 20.0% |
| !!! | CAAAGATATATTTTTATGAG+CGG | + | chr3.1:54007545-54007564 | None:intergenic | 20.0% |
| !!! | CTCTACAATTTTTCATATTA+TGG | - | chr3.1:54007197-54007216 | MS.gene008337:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | - | chr3.1:54009243-54009262 | MS.gene008337:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | - | chr3.1:54009072-54009091 | MS.gene008337:intron | 20.0% |
| !!! | TTTTCATTATGATGATTGTT+TGG | + | chr3.1:54008980-54008999 | None:intergenic | 20.0% |
| ! | AAAAAACTCAAGTCTTACAT+TGG | + | chr3.1:54008282-54008301 | None:intergenic | 25.0% |
| ! | AACATGATATTGAAGCATAA+AGG | + | chr3.1:54009467-54009486 | None:intergenic | 25.0% |
| ! | CATATTATGGAAACTTTGAA+TGG | - | chr3.1:54007210-54007229 | MS.gene008337:intron | 25.0% |
| ! | CTTGATGAGAATTTATAAAG+AGG | + | chr3.1:54008247-54008266 | None:intergenic | 25.0% |
| ! | GTACACATATTTACTATGTT+GGG | + | chr3.1:54008123-54008142 | None:intergenic | 25.0% |
| ! | GTTAATGATATGATAAGCAA+CGG | - | chr3.1:54006914-54006933 | MS.gene008337:CDS | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | - | chr3.1:54009106-54009125 | MS.gene008337:intron | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | + | chr3.1:54008722-54008741 | None:intergenic | 25.0% |
| !! | AATTTTGTCTGTGTTGAAAT+TGG | - | chr3.1:54008174-54008193 | MS.gene008337:intron | 25.0% |
| !! | ATTTTGTCTGTGTTGAAATT+GGG | - | chr3.1:54008175-54008194 | MS.gene008337:intron | 25.0% |
| !! | GAAATAATTTGTGATAAGTG+TGG | - | chr3.1:54007395-54007414 | MS.gene008337:intron | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | + | chr3.1:54008753-54008772 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | + | chr3.1:54008739-54008758 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTTTCAGCCCTT+TGG | - | chr3.1:54008494-54008513 | MS.gene008337:intron | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | - | chr3.1:54009063-54009082 | MS.gene008337:intron | 25.0% |
| !!! | CTCAACTATATTTTTATGAG+CGG | + | chr3.1:54007816-54007835 | None:intergenic | 25.0% |
| !!! | GACTTTAAATAGTATCGATT+AGG | + | chr3.1:54008809-54008828 | None:intergenic | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | + | chr3.1:54008804-54008823 | None:intergenic | 25.0% |
| AATAGACATTACGTCATGTT+AGG | - | chr3.1:54008932-54008951 | MS.gene008337:intron | 30.0% | |
| ACAGACAAAATTCAACATGT+TGG | + | chr3.1:54008166-54008185 | None:intergenic | 30.0% | |
| ACATTCTCATTAAATACGAG+TGG | + | chr3.1:54008448-54008467 | None:intergenic | 30.0% | |
| ACTATATATATACTACCTGG+AGG | + | chr3.1:54006822-54006841 | None:intergenic | 30.0% | |
| CACCAAAGAAAACAAAAACA+AGG | + | chr3.1:54007592-54007611 | None:intergenic | 30.0% | |
| CATTTCATTTCACTTAGTGT+AGG | + | chr3.1:54008075-54008094 | None:intergenic | 30.0% | |
| CGATATATGATGATATGTGT+GGG | - | chr3.1:54007364-54007383 | MS.gene008337:intron | 30.0% | |
| CGTACACATATTTACTATGT+TGG | + | chr3.1:54008124-54008143 | None:intergenic | 30.0% | |
| CTTGTCATTCTACCAAAAAT+GGG | - | chr3.1:54009491-54009510 | MS.gene008337:intron | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | - | chr3.1:54006769-54006788 | MS.gene008337:CDS | 30.0% | |
| TCTTGTCATTCTACCAAAAA+TGG | - | chr3.1:54009490-54009509 | MS.gene008337:intron | 30.0% | |
| ! | ATCCAGGATTTTTGAATAGT+GGG | - | chr3.1:54007136-54007155 | MS.gene008337:intron | 30.0% |
| ! | TTTTGTCTGTGTTGAAATTG+GGG | - | chr3.1:54008176-54008195 | MS.gene008337:intron | 30.0% |
| !! | AAATAGTATCGATTAGGTAC+GGG | + | chr3.1:54008803-54008822 | None:intergenic | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | + | chr3.1:54006861-54006880 | None:intergenic | 30.0% |
| !! | GAAAGATACAAAAGCATCTA+GGG | + | chr3.1:54006860-54006879 | None:intergenic | 30.0% |
| !! | GTCATGTTAGGCTTTTAAAA+TGG | - | chr3.1:54008944-54008963 | MS.gene008337:intron | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | - | chr3.1:54007830-54007849 | MS.gene008337:intron | 30.0% |
| !!! | CTTGTTTTTGTTTTCTTTGG+TGG | - | chr3.1:54007590-54007609 | MS.gene008337:intron | 30.0% |
| !!! | GACCTTGTTTTTGTTTTCTT+TGG | - | chr3.1:54007587-54007606 | MS.gene008337:intron | 30.0% |
| AACAGATTAGCAAGCCAATA+TGG | + | chr3.1:54009123-54009142 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | - | chr3.1:54008550-54008569 | MS.gene008337:intron | 35.0% | |
| AGGAATTGGACATCTTATTG+AGG | - | chr3.1:54009652-54009671 | MS.gene008337:CDS | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | + | chr3.1:54009008-54009027 | None:intergenic | 35.0% | |
| ATGTATGTTCATCCATGTGT+GGG | + | chr3.1:54007501-54007520 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | - | chr3.1:54009665-54009684 | MS.gene008337:CDS | 35.0% | |
| GAAATCGAATGAGAGATGAT+CGG | + | chr3.1:54007300-54007319 | None:intergenic | 35.0% | |
| GCGATATATGATGATATGTG+TGG | - | chr3.1:54007363-54007382 | MS.gene008337:intron | 35.0% | |
| GTAAAAACTATGAGCTGCTA+TGG | + | chr3.1:54007016-54007035 | None:intergenic | 35.0% | |
| TCAATAAGATGTCCAATTCC+TGG | + | chr3.1:54009653-54009672 | None:intergenic | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | - | chr3.1:54009664-54009683 | MS.gene008337:CDS | 35.0% | |
| TGCGAAAAATAATTCCCGAA+AGG | - | chr3.1:54006969-54006988 | MS.gene008337:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | - | chr3.1:54009751-54009770 | MS.gene008337:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | - | chr3.1:54009403-54009422 | MS.gene008337:intron | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | + | chr3.1:54007067-54007086 | None:intergenic | 35.0% |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | + | chr3.1:54006741-54006760 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | + | chr3.1:54007066-54007085 | None:intergenic | 35.0% |
| ! | GATCCAGGATTTTTGAATAG+TGG | - | chr3.1:54007135-54007154 | MS.gene008337:intron | 35.0% |
| ! | TCCAGGATTTTTGAATAGTG+GGG | - | chr3.1:54007137-54007156 | MS.gene008337:intron | 35.0% |
| ! | TGTGATTTGTGTAGAATCGA+GGG | - | chr3.1:54009322-54009341 | MS.gene008337:intron | 35.0% |
| ! | TTGTGATTTGTGTAGAATCG+AGG | - | chr3.1:54009321-54009340 | MS.gene008337:intron | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | + | chr3.1:54008736-54008755 | None:intergenic | 35.0% |
| !! | TAGTTGACATTTTGACCACA+TGG | + | chr3.1:54007422-54007441 | None:intergenic | 35.0% |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | + | chr3.1:54007058-54007077 | None:intergenic | 35.0% |
| !!! | TGAGCGGCTTTTTTTTTGAA+TGG | + | chr3.1:54007800-54007819 | None:intergenic | 35.0% |
| AAATCACCATCCTCTACAAC+TGG | + | chr3.1:54008527-54008546 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | + | chr3.1:54008512-54008531 | None:intergenic | 40.0% | |
| AGAAAGCTGTGGTGAATCAA+TGG | - | chr3.1:54009414-54009433 | MS.gene008337:intron | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | - | chr3.1:54009702-54009721 | MS.gene008337:CDS | 40.0% | |
| ATCCGATGTGAGACTCTTAA+CGG | - | chr3.1:54008339-54008358 | MS.gene008337:intron | 40.0% | |
| CATCACAAAACCAACTTGTG+AGG | - | chr3.1:54008209-54008228 | MS.gene008337:intron | 40.0% | |
| CTTAGTCATCTTCCAGGAAT+TGG | - | chr3.1:54009638-54009657 | MS.gene008337:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | - | chr3.1:54009706-54009725 | MS.gene008337:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | - | chr3.1:54008536-54008555 | MS.gene008337:intron | 40.0% | |
| GATGTATGTTCATCCATGTG+TGG | + | chr3.1:54007502-54007521 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | + | chr3.1:54008513-54008532 | None:intergenic | 40.0% | |
| TAGAATCGAGGGCTATTGTA+AGG | - | chr3.1:54009333-54009352 | MS.gene008337:intron | 40.0% | |
| TAGCGAAGGAAATTATTCCG+AGG | + | chr3.1:54007102-54007121 | None:intergenic | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | + | chr3.1:54006816-54006835 | None:intergenic | 40.0% | |
| TATGTGTGTCGCAAACCTTT+CGG | + | chr3.1:54006987-54007006 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | + | chr3.1:54009521-54009540 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | - | chr3.1:54009610-54009629 | MS.gene008337:intron | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | - | chr3.1:54009567-54009586 | MS.gene008337:intron | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | - | chr3.1:54009684-54009703 | MS.gene008337:CDS | 40.0% | |
| ! | CAATTTGTTCGCAATAGCCT+CGG | - | chr3.1:54007082-54007101 | MS.gene008337:CDS | 40.0% |
| ! | CCAGGATTTTTGAATAGTGG+GGG | - | chr3.1:54007138-54007157 | MS.gene008337:intron | 40.0% |
| ! | TTTGGGATTAGCGGAATACA+AGG | + | chr3.1:54007049-54007068 | None:intergenic | 40.0% |
| !! | AAACAAAGAGAGAGCACCAA+TGG | - | chr3.1:54008760-54008779 | MS.gene008337:intron | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | - | chr3.1:54009732-54009751 | MS.gene008337:CDS | 40.0% |
| !! | CTTCTAAAGTTGTGCCAAGT+AGG | + | chr3.1:54009394-54009413 | None:intergenic | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | - | chr3.1:54009723-54009742 | MS.gene008337:CDS | 40.0% |
| !! | TAGTTCTGAACAGAAGCTAG+AGG | - | chr3.1:54009541-54009560 | MS.gene008337:intron | 40.0% |
| !! | TCTGAAAGCACTTATCTTGC+TGG | - | chr3.1:54009593-54009612 | MS.gene008337:intron | 40.0% |
| !!! | CTTTGGTGGTTCTTTTTTCG+TGG | - | chr3.1:54007604-54007623 | MS.gene008337:intron | 40.0% |
| AAAGTTGTGCCAAGTAGGTC+AGG | + | chr3.1:54009389-54009408 | None:intergenic | 45.0% | |
| ACACTCATCACCTCACAAGT+TGG | + | chr3.1:54008222-54008241 | None:intergenic | 45.0% | |
| AGCTGTACAAGATACACCTG+AGG | + | chr3.1:54007710-54007729 | None:intergenic | 45.0% | |
| ATGTGTGTCGCAAACCTTTC+GGG | + | chr3.1:54006986-54007005 | None:intergenic | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | - | chr3.1:54008518-54008537 | MS.gene008337:intron | 45.0% | |
| CCCCCACTATTCAAAAATCC+TGG | + | chr3.1:54007141-54007160 | None:intergenic | 45.0% | |
| CCTTCGCTATCAATCAGTGA+CGG | - | chr3.1:54007113-54007132 | MS.gene008337:intron | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | - | chr3.1:54009500-54009519 | MS.gene008337:intron | 45.0% | |
| GACCGTTAAGAGTCTCACAT+CGG | + | chr3.1:54008344-54008363 | None:intergenic | 45.0% | |
| GCTGATCTTAGTCATCTTCC+AGG | - | chr3.1:54009632-54009651 | MS.gene008337:intron | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | - | chr3.1:54009705-54009724 | MS.gene008337:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | - | chr3.1:54006705-54006724 | MS.gene008337:CDS | 45.0% | |
| TAGCGGAATACAAGGATGGT+TGG | + | chr3.1:54007041-54007060 | None:intergenic | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | + | chr3.1:54009749-54009768 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | - | chr3.1:54008514-54008533 | MS.gene008337:intron | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | - | chr3.1:54006704-54006723 | MS.gene008337:CDS | 45.0% | |
| ! | GGATTAGCGGAATACAAGGA+TGG | + | chr3.1:54007045-54007064 | None:intergenic | 45.0% |
| ! | TATCGATTAGGTACGGGATG+TGG | + | chr3.1:54008797-54008816 | None:intergenic | 45.0% |
| ! | TCTCCAGGCTTACCCATTTT+TGG | + | chr3.1:54009506-54009525 | None:intergenic | 45.0% |
| ! | TTGAGCGTGAAGGAGTGTAT+TGG | + | chr3.1:54008305-54008324 | None:intergenic | 45.0% |
| !! | GAAAAGAGTGTTGAGCGTGA+AGG | + | chr3.1:54008315-54008334 | None:intergenic | 45.0% |
| !! | GAGCGGTGTTATTGATAGCA+GGG | + | chr3.1:54007528-54007547 | None:intergenic | 45.0% |
| !! | GGTGTTATTGATAGCAGGGA+TGG | + | chr3.1:54007524-54007543 | None:intergenic | 45.0% |
| !! | TATCAATCAGTGACGGATCC+AGG | - | chr3.1:54007120-54007139 | MS.gene008337:intron | 45.0% |
| !! | TGAGCGGTGTTATTGATAGC+AGG | + | chr3.1:54007529-54007548 | None:intergenic | 45.0% |
| !!! | TTCTTTTTTCGTGGCTCCCT+TGG | - | chr3.1:54007613-54007632 | MS.gene008337:intron | 45.0% |
| GCCAGCTTGGAAGAAGTTGA+AGG | - | chr3.1:54009745-54009764 | MS.gene008337:CDS | 50.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | - | chr3.1:54006732-54006751 | MS.gene008337:CDS | 50.0% | |
| TGTAGGCACAAACCCACACA+TGG | - | chr3.1:54007486-54007505 | MS.gene008337:intron | 50.0% | |
| TGTGATAAGTGTGGGCCATG+TGG | - | chr3.1:54007404-54007423 | MS.gene008337:intron | 50.0% | |
| ! | TCGTTTTGTGGAGCTAGTCG+TGG | - | chr3.1:54007651-54007670 | MS.gene008337:intron | 50.0% |
| !! | CCGTCACTGATTGATAGCGA+AGG | + | chr3.1:54007116-54007135 | None:intergenic | 50.0% |
| !!! | TTTTTTCGTGGCTCCCTTGG+TGG | - | chr3.1:54007616-54007635 | MS.gene008337:intron | 50.0% |
| ACCTGAGTTCCTTCTCCTCC+AGG | - | chr3.1:54006804-54006823 | MS.gene008337:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | + | chr3.1:54006808-54006827 | None:intergenic | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | - | chr3.1:54006711-54006730 | MS.gene008337:CDS | 55.0% | |
| GAGCACCAATGGAGACGACA+TGG | - | chr3.1:54008771-54008790 | MS.gene008337:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | - | chr3.1:54009362-54009381 | MS.gene008337:intron | 55.0% | |
| GCTCCACAAAACGAGCCAGA+CGG | + | chr3.1:54007645-54007664 | None:intergenic | 55.0% | |
| TGCCAAGTAGGTCAGGACCA+CGG | + | chr3.1:54009382-54009401 | None:intergenic | 55.0% | |
| TGTGGCCATGTCGTCTCCAT+TGG | + | chr3.1:54008779-54008798 | None:intergenic | 55.0% | |
| !! | CTTCCGTCTGGCTCGTTTTG+TGG | - | chr3.1:54007639-54007658 | MS.gene008337:intron | 55.0% |
| !!! | GGTTTTGAGCGTCCCTTGGA+CGG | - | chr3.1:54007682-54007701 | MS.gene008337:intron | 55.0% |
| ACACCTGAGGAGCCGTCCAA+GGG | + | chr3.1:54007697-54007716 | None:intergenic | 60.0% | |
| AGCCAGACGGAAGCCACCAA+GGG | + | chr3.1:54007632-54007651 | None:intergenic | 60.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | + | chr3.1:54006721-54006740 | None:intergenic | 60.0% | |
| GACCGTGGTCCTGACCTACT+TGG | - | chr3.1:54009377-54009396 | MS.gene008337:intron | 60.0% | |
| GAGCTAGTCGTGGCTTCGTG+GGG | - | chr3.1:54007661-54007680 | MS.gene008337:intron | 60.0% | |
| GGAGCTAGTCGTGGCTTCGT+GGG | - | chr3.1:54007660-54007679 | MS.gene008337:intron | 60.0% | |
| TACACCTGAGGAGCCGTCCA+AGG | + | chr3.1:54007698-54007717 | None:intergenic | 60.0% | |
| TGGAGCTAGTCGTGGCTTCG+TGG | - | chr3.1:54007659-54007678 | MS.gene008337:intron | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | - | chr3.1:54006723-54006742 | MS.gene008337:CDS | 60.0% |
| !!! | GTGGGGTTTTGAGCGTCCCT+TGG | - | chr3.1:54007678-54007697 | MS.gene008337:intron | 60.0% |
| GAGCCAGACGGAAGCCACCA+AGG | + | chr3.1:54007633-54007652 | None:intergenic | 65.0% | |
| ! | CTCCCTTGGTGGCTTCCGTC+TGG | - | chr3.1:54007627-54007646 | MS.gene008337:intron | 65.0% |
| CGTCCCTTGGACGGCTCCTC+AGG | - | chr3.1:54007691-54007710 | MS.gene008337:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 54006679 | 54009781 | 54006679 | ID=MS.gene008337 |
| chr3.1 | mRNA | 54006679 | 54009781 | 54006679 | ID=MS.gene008337.t1;Parent=MS.gene008337 |
| chr3.1 | exon | 54009635 | 54009781 | 54009635 | ID=MS.gene008337.t1.exon1;Parent=MS.gene008337.t1 |
| chr3.1 | CDS | 54009635 | 54009781 | 54009635 | ID=cds.MS.gene008337.t1;Parent=MS.gene008337.t1 |
| chr3.1 | exon | 54007903 | 54007951 | 54007903 | ID=MS.gene008337.t1.exon2;Parent=MS.gene008337.t1 |
| chr3.1 | CDS | 54007903 | 54007951 | 54007903 | ID=cds.MS.gene008337.t1;Parent=MS.gene008337.t1 |
| chr3.1 | exon | 54006679 | 54007124 | 54006679 | ID=MS.gene008337.t1.exon3;Parent=MS.gene008337.t1 |
| chr3.1 | CDS | 54006679 | 54007124 | 54006679 | ID=cds.MS.gene008337.t1;Parent=MS.gene008337.t1 |
| Gene Sequence |
| Protein sequence |
