Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049706.t1 | AUW37509.1 | 98.6 | 212 | 3 | 0 | 1 | 212 | 1 | 212 | 2.00E-116 | 428.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049706.t1 | Q96324 | 58.5 | 212 | 88 | 0 | 1 | 212 | 1 | 212 | 1.5e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049706.t1 | A0A2Z2Z7E2 | 98.6 | 212 | 3 | 0 | 1 | 212 | 1 | 212 | 1.5e-116 | 428.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22196 | MS.gene049706 | PPI |
| MS.gene049706 | MS.gene05016 | PPI |
| MS.gene48030 | MS.gene049706 | PPI |
| MS.gene048703 | MS.gene049706 | PPI |
| MS.gene03034 | MS.gene049706 | PPI |
| MS.gene69505 | MS.gene049706 | PPI |
| MS.gene04976 | MS.gene049706 | PPI |
| MS.gene017062 | MS.gene049706 | PPI |
| MS.gene049706 | MS.gene48032 | PPI |
| MS.gene005621 | MS.gene049706 | PPI |
| MS.gene049706 | MS.gene07192 | PPI |
| MS.gene049699 | MS.gene049706 | PPI |
| MS.gene038277 | MS.gene049706 | PPI |
| MS.gene83384 | MS.gene049706 | PPI |
| MS.gene20711 | MS.gene049706 | PPI |
| MS.gene008334 | MS.gene049706 | PPI |
| MS.gene008278 | MS.gene049706 | PPI |
| MS.gene061566 | MS.gene049706 | PPI |
| MS.gene019181 | MS.gene049706 | PPI |
| MS.gene008337 | MS.gene049706 | PPI |
| MS.gene017060 | MS.gene049706 | PPI |
| MS.gene019183 | MS.gene049706 | PPI |
| MS.gene22195 | MS.gene049706 | PPI |
| MS.gene048743 | MS.gene049706 | PPI |
| MS.gene69499 | MS.gene049706 | PPI |
| MS.gene22188 | MS.gene049706 | PPI |
| MS.gene000510 | MS.gene049706 | PPI |
| MS.gene47714 | MS.gene049706 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049706.t1 | MTR_3g064700 | 98.113 | 212 | 4 | 0 | 1 | 212 | 1 | 212 | 1.66e-155 | 429 |
| MS.gene049706.t1 | MTR_3g450930 | 57.820 | 211 | 88 | 1 | 1 | 211 | 1 | 210 | 6.74e-90 | 263 |
| MS.gene049706.t1 | MTR_3g450790 | 58.294 | 211 | 87 | 1 | 1 | 211 | 1 | 210 | 1.13e-87 | 258 |
| MS.gene049706.t1 | MTR_5g090920 | 56.338 | 213 | 87 | 4 | 1 | 210 | 1 | 210 | 8.19e-81 | 240 |
| MS.gene049706.t1 | MTR_5g090910 | 53.052 | 213 | 96 | 3 | 1 | 211 | 1 | 211 | 1.80e-76 | 229 |
| MS.gene049706.t1 | MTR_1g026140 | 45.327 | 214 | 112 | 2 | 3 | 211 | 5 | 218 | 1.71e-61 | 191 |
| MS.gene049706.t1 | MTR_1g088840 | 43.478 | 207 | 116 | 1 | 2 | 208 | 3 | 208 | 1.29e-58 | 184 |
| MS.gene049706.t1 | MTR_1g088825 | 43.478 | 207 | 116 | 1 | 2 | 208 | 3 | 208 | 1.29e-58 | 184 |
| MS.gene049706.t1 | MTR_1g088845 | 44.444 | 207 | 114 | 1 | 2 | 208 | 3 | 208 | 1.62e-57 | 181 |
| MS.gene049706.t1 | MTR_1g088850 | 42.584 | 209 | 118 | 2 | 1 | 208 | 1 | 208 | 1.77e-56 | 178 |
| MS.gene049706.t1 | MTR_5g090910 | 51.351 | 148 | 69 | 2 | 66 | 211 | 8 | 154 | 6.81e-47 | 152 |
| MS.gene049706.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 1.33e-45 | 149 |
| MS.gene049706.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 1.02e-24 | 94.4 |
| MS.gene049706.t1 | MTR_8g098420 | 27.419 | 186 | 132 | 1 | 1 | 183 | 1 | 186 | 6.86e-14 | 67.8 |
| MS.gene049706.t1 | MTR_8g098420 | 27.485 | 171 | 121 | 1 | 1 | 168 | 1 | 171 | 1.72e-13 | 67.8 |
| MS.gene049706.t1 | MTR_4g134380 | 28.358 | 201 | 125 | 5 | 5 | 202 | 18 | 202 | 2.56e-12 | 63.9 |
| MS.gene049706.t1 | MTR_2g005570 | 29.070 | 172 | 109 | 6 | 40 | 208 | 42 | 203 | 2.72e-12 | 65.5 |
| MS.gene049706.t1 | MTR_2g005570 | 29.070 | 172 | 109 | 6 | 40 | 208 | 42 | 203 | 2.93e-12 | 65.1 |
| MS.gene049706.t1 | MTR_4g134370 | 34.906 | 106 | 68 | 1 | 5 | 110 | 18 | 122 | 3.82e-12 | 63.5 |
| MS.gene049706.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 4.10e-12 | 59.7 |
| MS.gene049706.t1 | MTR_4g134380 | 33.019 | 106 | 70 | 1 | 5 | 110 | 18 | 122 | 7.45e-12 | 62.0 |
| MS.gene049706.t1 | MTR_4g134770 | 32.576 | 132 | 75 | 4 | 40 | 167 | 40 | 161 | 4.80e-11 | 61.6 |
| MS.gene049706.t1 | MTR_4g134770 | 27.746 | 173 | 111 | 4 | 40 | 208 | 5 | 167 | 5.14e-11 | 61.6 |
| MS.gene049706.t1 | MTR_4g134360 | 31.967 | 122 | 78 | 3 | 4 | 125 | 15 | 131 | 5.99e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049706.t1 | AT3G03190 | 58.491 | 212 | 88 | 0 | 1 | 212 | 1 | 212 | 2.56e-93 | 272 |
| MS.gene049706.t1 | AT5G17220 | 54.717 | 212 | 96 | 0 | 1 | 212 | 1 | 212 | 2.83e-89 | 261 |
| MS.gene049706.t1 | AT2G30870 | 52.885 | 208 | 97 | 1 | 1 | 208 | 1 | 207 | 7.05e-77 | 230 |
| MS.gene049706.t1 | AT2G30860 | 52.174 | 207 | 98 | 1 | 1 | 207 | 1 | 206 | 6.42e-74 | 223 |
| MS.gene049706.t1 | AT3G62760 | 43.810 | 210 | 116 | 2 | 1 | 209 | 1 | 209 | 3.92e-58 | 182 |
| MS.gene049706.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 1.07e-55 | 176 |
| MS.gene049706.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 1.07e-55 | 176 |
| MS.gene049706.t1 | AT1G02920 | 43.689 | 206 | 115 | 1 | 3 | 208 | 4 | 208 | 2.88e-55 | 175 |
| MS.gene049706.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 1.31e-54 | 175 |
| MS.gene049706.t1 | AT2G47730 | 43.750 | 208 | 115 | 2 | 5 | 211 | 54 | 260 | 1.31e-54 | 175 |
| MS.gene049706.t1 | AT4G02520 | 41.429 | 210 | 119 | 2 | 3 | 209 | 4 | 212 | 1.48e-52 | 168 |
| MS.gene049706.t1 | AT2G02930 | 41.627 | 209 | 118 | 2 | 3 | 208 | 4 | 211 | 2.42e-51 | 165 |
| MS.gene049706.t1 | AT2G30860 | 51.613 | 155 | 74 | 1 | 1 | 155 | 1 | 154 | 8.91e-51 | 162 |
| MS.gene049706.t1 | AT1G49860 | 44.503 | 191 | 103 | 2 | 20 | 207 | 22 | 212 | 1.31e-50 | 165 |
| MS.gene049706.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 6.63e-50 | 162 |
| MS.gene049706.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 6.63e-50 | 162 |
| MS.gene049706.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 28 | 230 | 6.95e-50 | 162 |
| MS.gene049706.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 38 | 240 | 7.66e-50 | 162 |
| MS.gene049706.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 7.79e-48 | 157 |
| MS.gene049706.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 7.79e-48 | 157 |
| MS.gene049706.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 53 | 256 | 1.08e-47 | 157 |
| MS.gene049706.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 65 | 268 | 1.12e-47 | 158 |
| MS.gene049706.t1 | AT1G02950 | 40.972 | 144 | 83 | 2 | 64 | 206 | 60 | 202 | 2.53e-29 | 108 |
| MS.gene049706.t1 | AT5G41240 | 28.708 | 209 | 142 | 3 | 1 | 204 | 1 | 207 | 3.39e-15 | 73.9 |
| MS.gene049706.t1 | AT1G77290 | 23.629 | 237 | 149 | 6 | 3 | 208 | 1 | 236 | 5.05e-14 | 69.3 |
| MS.gene049706.t1 | AT1G77290 | 23.629 | 237 | 149 | 6 | 3 | 208 | 1 | 236 | 5.05e-14 | 69.3 |
| MS.gene049706.t1 | AT1G77290 | 23.629 | 237 | 149 | 6 | 3 | 208 | 1 | 236 | 5.05e-14 | 69.3 |
| MS.gene049706.t1 | AT5G41220 | 27.228 | 202 | 142 | 2 | 1 | 197 | 1 | 202 | 1.43e-13 | 69.3 |
| MS.gene049706.t1 | AT1G09640 | 28.272 | 191 | 124 | 4 | 27 | 211 | 22 | 205 | 4.13e-13 | 66.6 |
| MS.gene049706.t1 | AT5G41210 | 26.733 | 202 | 143 | 2 | 1 | 197 | 2 | 203 | 6.65e-13 | 65.9 |
| MS.gene049706.t1 | AT1G57720 | 27.326 | 172 | 113 | 4 | 40 | 208 | 40 | 202 | 2.08e-12 | 65.9 |
| MS.gene049706.t1 | AT1G57720 | 27.326 | 172 | 113 | 4 | 40 | 208 | 40 | 202 | 2.08e-12 | 65.9 |
| MS.gene049706.t1 | AT1G09640 | 27.660 | 188 | 123 | 4 | 27 | 208 | 22 | 202 | 8.03e-12 | 63.9 |
Find 47 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3.3:-58346027 | MS.gene049706:CDS |
| TCTTATTGAAGCAGCAAAAT+TGG | 0.193373 | 3.3:-58343038 | MS.gene049706:CDS |
| CTTAGCCATCTTCCTGGAAT+TGG | 0.305727 | 3.3:-58343064 | MS.gene049706:CDS |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.3:-58344688 | MS.gene049706:intron |
| TCCAAAAGCACTTATCTTGC+TGG | 0.310531 | 3.3:-58343109 | MS.gene049706:CDS |
| ACCAGCAAGATAAGTGCTTT+TGG | 0.312379 | 3.3:+58343108 | None:intergenic |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.3:-58345934 | MS.gene049706:CDS |
| GCTGATCTTAGCCATCTTCC+TGG | 0.323812 | 3.3:-58343070 | MS.gene049706:CDS |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3.3:-58342951 | MS.gene049706:CDS |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.3:+58344700 | None:intergenic |
| CTTATTGAAGCAGCAAAATT+GGG | 0.414566 | 3.3:-58343037 | MS.gene049706:CDS |
| TTGTGATTTGTGTAGAATCA+AGG | 0.420564 | 3.3:-58343381 | MS.gene049706:intron |
| GAGGGTGATGGCTTGCCTCT+TGG | 0.421689 | 3.3:-58345980 | MS.gene049706:CDS |
| AACATGATATTGAAGCATAA+AGG | 0.427566 | 3.3:+58343238 | None:intergenic |
| TCAATAAGATGTCCAATTCC+AGG | 0.441254 | 3.3:+58343052 | None:intergenic |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.3:+58342956 | None:intergenic |
| AAAGTTGTGCCAAGTAAGTC+AGG | 0.462656 | 3.3:+58343316 | None:intergenic |
| AGAAAGCTGTGGTGAATCAA+TGG | 0.489459 | 3.3:-58343288 | MS.gene049706:CDS |
| ACCTGAGTATCTTCTCCTCC+AGG | 0.504475 | 3.3:-58345899 | MS.gene049706:intron |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.3:-58342970 | MS.gene049706:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.3:-58343092 | MS.gene049706:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.3:-58342979 | MS.gene049706:CDS |
| TAGAATCAAGGGCTATTGTA+AGG | 0.513820 | 3.3:-58343369 | MS.gene049706:CDS |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3.3:-58342944 | None:intergenic |
| GATGTCCAATTCCAGGAAGA+TGG | 0.515702 | 3.3:+58343059 | None:intergenic |
| GACCGTGGTCCTGACTTACT+TGG | 0.519069 | 3.3:-58343325 | MS.gene049706:CDS |
| TGTGATTTGTGTAGAATCAA+GGG | 0.531371 | 3.3:-58343380 | MS.gene049706:intron |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.3:+58344715 | None:intergenic |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.3:-58344710 | MS.gene049706:CDS |
| AGCTTGTCCTCAGAGGGTGA+TGG | 0.555673 | 3.3:-58345992 | MS.gene049706:CDS |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.3:+58343184 | None:intergenic |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.3:-58344706 | MS.gene049706:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.3:-58342957 | MS.gene049706:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.3:-58343000 | MS.gene049706:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.3:-58342996 | MS.gene049706:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.3:-58342997 | MS.gene049706:CDS |
| TAGTTCTGAACAGAAGCTAG+AGG | 0.602484 | 3.3:-58343161 | MS.gene049706:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.3:+58344714 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.3:-58343018 | MS.gene049706:CDS |
| TAATGCAGCTTGTCCTCAGA+GGG | 0.616468 | 3.3:-58345998 | MS.gene049706:CDS |
| ACCTGGAGGAGAAGATACTC+AGG | 0.621803 | 3.3:+58345898 | None:intergenic |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647043 | 3.3:+58345985 | None:intergenic |
| TTAATGCAGCTTGTCCTCAG+AGG | 0.663267 | 3.3:-58345999 | MS.gene049706:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.697603 | 3.3:-58343299 | MS.gene049706:CDS |
| GCAGCAAAGTATGCAGACCG+TGG | 0.721309 | 3.3:-58343340 | MS.gene049706:CDS |
| TGCCAAGTAAGTCAGGACCA+CGG | 0.737821 | 3.3:+58343323 | None:intergenic |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.3:-58343135 | MS.gene049706:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCAAATTTATTATTTTTTA+GGG | + | chr3.3:58344395-58344414 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | + | chr3.3:58344396-58344415 | None:intergenic | 10.0% |
| !!! | TTAATTTTTGTTTTTTGATT+AGG | + | chr3.3:58344567-58344586 | None:intergenic | 10.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | + | chr3.3:58343149-58343168 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3.3:58345137-58345156 | MS.gene049706:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr3.3:58345156-58345137 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3.3:58345138-58345157 | MS.gene049706:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr3.3:58345157-58345138 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3.3:58344916-58344935 | None:intergenic | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | - | chr3.3:58343715-58343734 | MS.gene049706:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | + | chr3.3:58344446-58344465 | None:intergenic | 15.0% |
| !!! | AATAGTTAGCAAATTTTAAT+TGG | + | chr3.3:58343540-58343559 | None:intergenic | 15.0% |
| !!! | AATTAACCCTTTTTTTTTTT+TGG | - | chr3.3:58345203-58345222 | MS.gene049706:intron | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr3.3:58344881-58344900 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTATAAAAGTATG+CGG | - | chr3.3:58343656-58343675 | MS.gene049706:intron | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | - | chr3.3:58343761-58343780 | MS.gene049706:intron | 15.0% |
| !!! | TTTTCATTATGATAATTGTT+TGG | + | chr3.3:58345268-58345287 | None:intergenic | 15.0% |
| !! | AAAAAGTAATGATTACATGA+TGG | + | chr3.3:58344229-58344248 | None:intergenic | 20.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | - | chr3.3:58343609-58343628 | MS.gene049706:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3.3:58344786-58344805 | None:intergenic | 20.0% |
| !! | ACATTGCTCATATTTAAATA+AGG | - | chr3.3:58345476-58345495 | MS.gene049706:intron | 20.0% |
| !! | AGTGCATAAAAACAAAATTA+GGG | + | chr3.3:58344753-58344772 | None:intergenic | 20.0% |
| !! | ATAAAGTAACATGTTATGTT+AGG | - | chr3.3:58345558-58345577 | MS.gene049706:intron | 20.0% |
| !! | GAGTAACCAAAAAAAAAAAA+GGG | + | chr3.3:58345212-58345231 | None:intergenic | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | - | chr3.3:58343714-58343733 | MS.gene049706:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3.3:58344787-58344806 | None:intergenic | 20.0% |
| !! | TTTATAAACTATATACTACC+TGG | + | chr3.3:58343092-58343111 | None:intergenic | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | - | chr3.3:58345530-58345549 | MS.gene049706:intron | 20.0% |
| !!! | GATATCTCAACTATATTTTT+AGG | + | chr3.3:58343608-58343627 | None:intergenic | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | - | chr3.3:58345531-58345550 | MS.gene049706:intron | 20.0% |
| !!! | TTTAATTTTCATGGTTTCAT+TGG | - | chr3.3:58345360-58345379 | MS.gene049706:intron | 20.0% |
| !!! | TTTTGTTTTTTGATTAGGTA+CGG | + | chr3.3:58344562-58344581 | None:intergenic | 20.0% |
| ! | AAAAAATTCAAGTCTCACAT+CGG | + | chr3.3:58344022-58344041 | None:intergenic | 25.0% |
| ! | AACATGATATTGAAGCATAA+AGG | + | chr3.3:58345735-58345754 | None:intergenic | 25.0% |
| ! | CAAGATTAAAACACTATGAA+AGG | + | chr3.3:58345013-58345032 | None:intergenic | 25.0% |
| ! | CAGTGCATAAAAACAAAATT+AGG | + | chr3.3:58344754-58344773 | None:intergenic | 25.0% |
| ! | CGAGTAACCAAAAAAAAAAA+AGG | + | chr3.3:58345213-58345232 | None:intergenic | 25.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | - | chr3.3:58345759-58345778 | MS.gene049706:intron | 25.0% |
| ! | TAATTCATGTGTATCCATAT+TGG | - | chr3.3:58345394-58345413 | MS.gene049706:intron | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | + | chr3.3:58344462-58344481 | None:intergenic | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | - | chr3.3:58345758-58345777 | MS.gene049706:intron | 25.0% |
| !! | AATTTTGTCTGTGTTGAAAT+TGG | - | chr3.3:58343914-58343933 | MS.gene049706:intron | 25.0% |
| !! | ATTTTGTCTGTGTTGAAATT+GGG | - | chr3.3:58343915-58343934 | MS.gene049706:intron | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | + | chr3.3:58344493-58344512 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | + | chr3.3:58344479-58344498 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3.3:58345076-58345095 | MS.gene049706:intron | 25.0% |
| !!! | ATTGCTCATATTTTTATGAG+CGG | + | chr3.3:58343393-58343412 | None:intergenic | 25.0% |
| !!! | CGTTAGTAGTTTAATTTTCA+TGG | - | chr3.3:58345351-58345370 | MS.gene049706:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3.3:58345075-58345094 | MS.gene049706:intron | 25.0% |
| !!! | TCATGTTAGGCTTTTTTTTT+GGG | - | chr3.3:58344650-58344669 | MS.gene049706:intron | 25.0% |
| !!! | TTTGTTTTTTGATTAGGTAC+GGG | + | chr3.3:58344561-58344580 | None:intergenic | 25.0% |
| AATAGACATTACGTCATGTT+AGG | - | chr3.3:58344637-58344656 | MS.gene049706:intron | 30.0% | |
| ACAGACAAAATTCAACATGT+TGG | + | chr3.3:58343906-58343925 | None:intergenic | 30.0% | |
| ACATTCTCATTAAATACGAG+TGG | + | chr3.3:58344190-58344209 | None:intergenic | 30.0% | |
| ATAAACTATATACTACCTGG+AGG | + | chr3.3:58343089-58343108 | None:intergenic | 30.0% | |
| CATTTCATTTCACTTAGTGT+AGG | + | chr3.3:58343838-58343857 | None:intergenic | 30.0% | |
| CTTATTGAAGCAGCAAAATT+GGG | - | chr3.3:58345933-58345952 | MS.gene049706:CDS | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | - | chr3.3:58343036-58343055 | MS.gene049706:CDS | 30.0% | |
| TCTTATTGAAGCAGCAAAAT+TGG | - | chr3.3:58345932-58345951 | MS.gene049706:CDS | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | + | chr3.3:58344347-58344366 | None:intergenic | 30.0% | |
| ! | TGTGATTTGTGTAGAATCAA+GGG | - | chr3.3:58345590-58345609 | MS.gene049706:intron | 30.0% |
| ! | TTGTGATTTGTGTAGAATCA+AGG | - | chr3.3:58345589-58345608 | MS.gene049706:intron | 30.0% |
| ! | TTTTGTCTGTGTTGAAATTG+GGG | - | chr3.3:58343916-58343935 | MS.gene049706:intron | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | + | chr3.3:58343124-58343143 | None:intergenic | 30.0% |
| !! | GAAAGATACAAAAGCATCTA+GGG | + | chr3.3:58343123-58343142 | None:intergenic | 30.0% |
| !! | GTCATGTTAGGCTTTTAAAA+TGG | - | chr3.3:58345232-58345251 | MS.gene049706:intron | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | - | chr3.3:58343617-58343636 | MS.gene049706:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3.3:58345169-58345188 | MS.gene049706:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3.3:58345188-58345169 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3.3:58345168-58345187 | MS.gene049706:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3.3:58345187-58345168 | None:intergenic | 30.0% |
| !!! | GTCATGTTAGGCTTTTTTTT+TGG | - | chr3.3:58344649-58344668 | MS.gene049706:intron | 30.0% |
| AACAGATTAGCAAGCCAATA+TGG | + | chr3.3:58345411-58345430 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3.3:58345153-58345172 | MS.gene049706:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr3.3:58345172-58345153 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | - | chr3.3:58344296-58344315 | MS.gene049706:intron | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | + | chr3.3:58345296-58345315 | None:intergenic | 35.0% | |
| GTAAAAACTATGAGCTGCTA+TGG | + | chr3.3:58343274-58343293 | None:intergenic | 35.0% | |
| TAGAATCAAGGGCTATTGTA+AGG | - | chr3.3:58345601-58345620 | MS.gene049706:intron | 35.0% | |
| TAGAGAAGGAAATTATTCCG+AGG | + | chr3.3:58343361-58343380 | None:intergenic | 35.0% | |
| TCAATAAGATGTCCAATTCC+AGG | + | chr3.3:58345921-58345940 | None:intergenic | 35.0% | |
| TGCGAAAAATAATTCCCGAA+AGG | - | chr3.3:58343227-58343246 | MS.gene049706:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | - | chr3.3:58346019-58346038 | MS.gene049706:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | - | chr3.3:58345671-58345690 | MS.gene049706:intron | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | + | chr3.3:58343326-58343345 | None:intergenic | 35.0% |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | + | chr3.3:58343008-58343027 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | + | chr3.3:58343325-58343344 | None:intergenic | 35.0% |
| ! | GTGTCGTTAATGATAAGCAA+CGG | - | chr3.3:58343172-58343191 | MS.gene049706:CDS | 35.0% |
| !! | AGATATCTTGGTTTTTCGGA+TGG | - | chr3.3:58343621-58343640 | MS.gene049706:intron | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | + | chr3.3:58344476-58344495 | None:intergenic | 35.0% |
| !! | GGGAATTATTTTTCGCATCA+AGG | + | chr3.3:58343224-58343243 | None:intergenic | 35.0% |
| !! | TTTTGGTTACTCGTCATGTT+AGG | - | chr3.3:58345220-58345239 | MS.gene049706:intron | 35.0% |
| !! | TTTTTGATTAGGTACGGGTT+TGG | + | chr3.3:58344556-58344575 | None:intergenic | 35.0% |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | + | chr3.3:58343317-58343336 | None:intergenic | 35.0% |
| !!! | TTACTTTTTTTGCAGCCCTT+TGG | - | chr3.3:58344240-58344259 | MS.gene049706:intron | 35.0% |
| AAAGTTGTGCCAAGTAAGTC+AGG | + | chr3.3:58345657-58345676 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | + | chr3.3:58344273-58344292 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | + | chr3.3:58344258-58344277 | None:intergenic | 40.0% | |
| AGAAAGCTGTGGTGAATCAA+TGG | - | chr3.3:58345682-58345701 | MS.gene049706:intron | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | - | chr3.3:58345970-58345989 | MS.gene049706:CDS | 40.0% | |
| ATCCGATGTGAGACTCTTAA+CGG | - | chr3.3:58344080-58344099 | MS.gene049706:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr3.3:58343478-58343497 | MS.gene049706:intron | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | - | chr3.3:58345974-58345993 | MS.gene049706:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | - | chr3.3:58344282-58344301 | MS.gene049706:intron | 40.0% | |
| GATTAGCGGAAATACAAGGA+TGG | + | chr3.3:58343303-58343322 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr3.3:58343475-58343494 | MS.gene049706:intron | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr3.3:58343467-58343486 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | + | chr3.3:58344259-58344278 | None:intergenic | 40.0% | |
| TATGTGTGTCGCAAACCTTT+CGG | + | chr3.3:58343245-58343264 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | + | chr3.3:58345789-58345808 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | - | chr3.3:58345878-58345897 | MS.gene049706:intron | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | - | chr3.3:58345835-58345854 | MS.gene049706:intron | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | - | chr3.3:58345952-58345971 | MS.gene049706:CDS | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr3.3:58343501-58343520 | MS.gene049706:intron | 40.0% | |
| TTAAGAGTCTCACATCGGAT+AGG | + | chr3.3:58344080-58344099 | None:intergenic | 40.0% | |
| ! | ACCAGCAAGATAAGTGCTTT+TGG | + | chr3.3:58345865-58345884 | None:intergenic | 40.0% |
| ! | CAATTTGTTCGCAATAGCCT+CGG | - | chr3.3:58343341-58343360 | MS.gene049706:CDS | 40.0% |
| ! | TTGGGATTAGCGGAAATACA+AGG | + | chr3.3:58343307-58343326 | None:intergenic | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | - | chr3.3:58346000-58346019 | MS.gene049706:CDS | 40.0% |
| !! | AACAAAGAGAGAGCACCAAT+TGG | - | chr3.3:58344501-58344520 | MS.gene049706:intron | 40.0% |
| !! | AGCGGTGTTATTGATAGAGA+AGG | + | chr3.3:58343375-58343394 | None:intergenic | 40.0% |
| !! | GGATAGGAGAAAAGAGTGTT+GGG | + | chr3.3:58344064-58344083 | None:intergenic | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | - | chr3.3:58345991-58346010 | MS.gene049706:CDS | 40.0% |
| !! | TAGTTCTGAACAGAAGCTAG+AGG | - | chr3.3:58345809-58345828 | MS.gene049706:intron | 40.0% |
| !! | TCCAAAAGCACTTATCTTGC+TGG | - | chr3.3:58345861-58345880 | MS.gene049706:intron | 40.0% |
| AATTGGCAATTGGGACGACA+TGG | - | chr3.3:58344518-58344537 | MS.gene049706:intron | 45.0% | |
| ACACTCATCACCTCACAAGT+CGG | + | chr3.3:58343962-58343981 | None:intergenic | 45.0% | |
| AGCGGAAATACAAGGATGGT+TGG | + | chr3.3:58343299-58343318 | None:intergenic | 45.0% | |
| ATGTCGTCCCAATTGCCAAT+TGG | + | chr3.3:58344519-58344538 | None:intergenic | 45.0% | |
| ATGTGTGTCGCAAACCTTTC+GGG | + | chr3.3:58343244-58343263 | None:intergenic | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | - | chr3.3:58344264-58344283 | MS.gene049706:intron | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | - | chr3.3:58345768-58345787 | MS.gene049706:intron | 45.0% | |
| CTTAGCCATCTTCCTGGAAT+TGG | - | chr3.3:58345906-58345925 | MS.gene049706:CDS | 45.0% | |
| GACCGTTAAGAGTCTCACAT+CGG | + | chr3.3:58344085-58344104 | None:intergenic | 45.0% | |
| GATGTCCAATTCCAGGAAGA+TGG | + | chr3.3:58345914-58345933 | None:intergenic | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | - | chr3.3:58345973-58345992 | MS.gene049706:CDS | 45.0% | |
| TAATGCAGCTTGTCCTCAGA+GGG | - | chr3.3:58342972-58342991 | MS.gene049706:CDS | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | + | chr3.3:58346017-58346036 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | - | chr3.3:58344260-58344279 | MS.gene049706:intron | 45.0% | |
| TTAATGCAGCTTGTCCTCAG+AGG | - | chr3.3:58342971-58342990 | MS.gene049706:CDS | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr3.3:58343495-58343514 | MS.gene049706:intron | 45.0% |
| ! | CGGATAGGAGAAAAGAGTGT+TGG | + | chr3.3:58344065-58344084 | None:intergenic | 45.0% |
| ! | TCTCCAGGCTTACCCATTTT+TGG | + | chr3.3:58345774-58345793 | None:intergenic | 45.0% |
| !! | AGAGAGCACCAATTGGCAAT+TGG | - | chr3.3:58344508-58344527 | MS.gene049706:intron | 45.0% |
| !! | CATCACAAAACCGACTTGTG+AGG | - | chr3.3:58343949-58343968 | MS.gene049706:intron | 45.0% |
| !! | GAGAGCACCAATTGGCAATT+GGG | - | chr3.3:58344509-58344528 | MS.gene049706:intron | 45.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3.3:58345108-58345127 | MS.gene049706:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3.3:58345109-58345128 | MS.gene049706:intron | 5.0% |
| ACCTGAGTATCTTCTCCTCC+AGG | - | chr3.3:58343071-58343090 | MS.gene049706:CDS | 50.0% | |
| ACCTGGAGGAGAAGATACTC+AGG | + | chr3.3:58343075-58343094 | None:intergenic | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr3.3:58343488-58343507 | None:intergenic | 50.0% | |
| GCCAGCTTGGAAGAAGTTGA+AGG | - | chr3.3:58346013-58346032 | MS.gene049706:CDS | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | - | chr3.3:58345900-58345919 | MS.gene049706:CDS | 50.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | - | chr3.3:58342999-58343018 | MS.gene049706:CDS | 50.0% | |
| TGCCAAGTAAGTCAGGACCA+CGG | + | chr3.3:58345650-58345669 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr3.3:58343483-58343502 | MS.gene049706:intron | 50.0% | |
| ! | TACGGGTTTGGTATCCCATG+TGG | + | chr3.3:58344544-58344563 | None:intergenic | 50.0% |
| ! | TTGGGCGTGAGAGAGTGTAT+TGG | + | chr3.3:58344046-58344065 | None:intergenic | 50.0% |
| AGCTTGTCCTCAGAGGGTGA+TGG | - | chr3.3:58342978-58342997 | MS.gene049706:CDS | 55.0% | |
| ATTGGGACGACATGGCCACA+TGG | - | chr3.3:58344526-58344545 | MS.gene049706:intron | 55.0% | |
| GACCGTGGTCCTGACTTACT+TGG | - | chr3.3:58345645-58345664 | MS.gene049706:intron | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | - | chr3.3:58345630-58345649 | MS.gene049706:intron | 55.0% | |
| TTGGGACGACATGGCCACAT+GGG | - | chr3.3:58344527-58344546 | MS.gene049706:intron | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | + | chr3.3:58342988-58343007 | None:intergenic | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | - | chr3.3:58342990-58343009 | MS.gene049706:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58342946 | 58346046 | 58342946 | ID=MS.gene049706 |
| chr3.3 | mRNA | 58342946 | 58346046 | 58342946 | ID=MS.gene049706.t1;Parent=MS.gene049706 |
| chr3.3 | exon | 58345900 | 58346046 | 58345900 | ID=MS.gene049706.t1.exon1;Parent=MS.gene049706.t1 |
| chr3.3 | CDS | 58345900 | 58346046 | 58345900 | ID=cds.MS.gene049706.t1;Parent=MS.gene049706.t1 |
| chr3.3 | exon | 58344689 | 58344737 | 58344689 | ID=MS.gene049706.t1.exon2;Parent=MS.gene049706.t1 |
| chr3.3 | CDS | 58344689 | 58344737 | 58344689 | ID=cds.MS.gene049706.t1;Parent=MS.gene049706.t1 |
| chr3.3 | exon | 58342946 | 58343388 | 58342946 | ID=MS.gene049706.t1.exon3;Parent=MS.gene049706.t1 |
| chr3.3 | CDS | 58342946 | 58343388 | 58342946 | ID=cds.MS.gene049706.t1;Parent=MS.gene049706.t1 |
| Gene Sequence |
| Protein sequence |
