Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048743.t1 | AUW37509.1 | 99.5 | 212 | 1 | 0 | 1 | 212 | 1 | 212 | 4.10E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048743.t1 | Q96324 | 59.0 | 212 | 87 | 0 | 1 | 212 | 1 | 212 | 9.1e-73 | 274.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048743.t1 | A0A2Z2Z7E2 | 99.5 | 212 | 1 | 0 | 1 | 212 | 1 | 212 | 3.0e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017060 | MS.gene048743 | PPI |
| MS.gene048743 | MS.gene048703 | PPI |
| MS.gene048743 | MS.gene83384 | PPI |
| MS.gene019183 | MS.gene048743 | PPI |
| MS.gene22195 | MS.gene048743 | PPI |
| MS.gene048743 | MS.gene47714 | PPI |
| MS.gene000510 | MS.gene048743 | PPI |
| MS.gene048743 | MS.gene48032 | PPI |
| MS.gene048743 | MS.gene017062 | PPI |
| MS.gene048743 | MS.gene03034 | PPI |
| MS.gene048743 | MS.gene07192 | PPI |
| MS.gene048743 | MS.gene69499 | PPI |
| MS.gene048743 | MS.gene69505 | PPI |
| MS.gene04976 | MS.gene048743 | PPI |
| MS.gene005621 | MS.gene048743 | PPI |
| MS.gene048743 | MS.gene019181 | PPI |
| MS.gene048743 | MS.gene061566 | PPI |
| MS.gene048743 | MS.gene049699 | PPI |
| MS.gene008337 | MS.gene048743 | PPI |
| MS.gene038277 | MS.gene048743 | PPI |
| MS.gene048743 | MS.gene22196 | PPI |
| MS.gene20711 | MS.gene048743 | PPI |
| MS.gene008334 | MS.gene048743 | PPI |
| MS.gene008278 | MS.gene048743 | PPI |
| MS.gene048743 | MS.gene48030 | PPI |
| MS.gene048743 | MS.gene049706 | PPI |
| MS.gene048743 | MS.gene05016 | PPI |
| MS.gene048743 | MS.gene22188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048743.t1 | MTR_3g064700 | 99.057 | 212 | 2 | 0 | 1 | 212 | 1 | 212 | 1.28e-156 | 432 |
| MS.gene048743.t1 | MTR_3g450930 | 56.872 | 211 | 90 | 1 | 1 | 211 | 1 | 210 | 9.41e-89 | 260 |
| MS.gene048743.t1 | MTR_3g450790 | 58.294 | 211 | 87 | 1 | 1 | 211 | 1 | 210 | 2.20e-87 | 257 |
| MS.gene048743.t1 | MTR_5g090920 | 55.399 | 213 | 89 | 4 | 1 | 210 | 1 | 210 | 7.13e-80 | 238 |
| MS.gene048743.t1 | MTR_5g090910 | 52.113 | 213 | 98 | 3 | 1 | 211 | 1 | 211 | 2.14e-75 | 226 |
| MS.gene048743.t1 | MTR_1g026140 | 45.794 | 214 | 111 | 2 | 3 | 211 | 5 | 218 | 1.18e-61 | 192 |
| MS.gene048743.t1 | MTR_1g088840 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 2.57e-59 | 186 |
| MS.gene048743.t1 | MTR_1g088825 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 2.57e-59 | 186 |
| MS.gene048743.t1 | MTR_1g088845 | 44.928 | 207 | 113 | 1 | 2 | 208 | 3 | 208 | 3.90e-58 | 182 |
| MS.gene048743.t1 | MTR_1g088850 | 42.584 | 209 | 118 | 2 | 1 | 208 | 1 | 208 | 7.70e-56 | 177 |
| MS.gene048743.t1 | MTR_5g090910 | 50.676 | 148 | 70 | 2 | 66 | 211 | 8 | 154 | 2.48e-46 | 150 |
| MS.gene048743.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 1.06e-45 | 149 |
| MS.gene048743.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 4.84e-25 | 95.1 |
| MS.gene048743.t1 | MTR_8g098420 | 27.957 | 186 | 131 | 1 | 1 | 183 | 1 | 186 | 1.68e-14 | 69.3 |
| MS.gene048743.t1 | MTR_8g098420 | 28.070 | 171 | 120 | 1 | 1 | 168 | 1 | 171 | 4.19e-14 | 69.3 |
| MS.gene048743.t1 | MTR_2g005570 | 30.233 | 172 | 107 | 6 | 40 | 208 | 42 | 203 | 1.61e-13 | 68.9 |
| MS.gene048743.t1 | MTR_2g005570 | 30.233 | 172 | 107 | 6 | 40 | 208 | 42 | 203 | 1.86e-13 | 68.6 |
| MS.gene048743.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 2.31e-12 | 60.5 |
| MS.gene048743.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 40 | 202 | 3.29e-12 | 65.1 |
| MS.gene048743.t1 | MTR_4g134770 | 28.324 | 173 | 110 | 4 | 40 | 208 | 5 | 167 | 4.19e-12 | 64.7 |
| MS.gene048743.t1 | MTR_3g058940 | 27.059 | 170 | 115 | 5 | 40 | 208 | 40 | 201 | 5.76e-12 | 64.3 |
| MS.gene048743.t1 | MTR_4g134380 | 28.358 | 201 | 125 | 5 | 5 | 202 | 18 | 202 | 1.26e-11 | 62.0 |
| MS.gene048743.t1 | MTR_4g134370 | 34.906 | 106 | 68 | 1 | 5 | 110 | 18 | 122 | 2.19e-11 | 61.6 |
| MS.gene048743.t1 | MTR_4g134380 | 33.019 | 106 | 70 | 1 | 5 | 110 | 18 | 122 | 4.19e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048743.t1 | AT3G03190 | 58.962 | 212 | 87 | 0 | 1 | 212 | 1 | 212 | 8.30e-94 | 273 |
| MS.gene048743.t1 | AT5G17220 | 54.717 | 212 | 96 | 0 | 1 | 212 | 1 | 212 | 3.91e-88 | 259 |
| MS.gene048743.t1 | AT2G30870 | 52.404 | 208 | 98 | 1 | 1 | 208 | 1 | 207 | 2.76e-76 | 229 |
| MS.gene048743.t1 | AT2G30860 | 51.208 | 207 | 100 | 1 | 1 | 207 | 1 | 206 | 8.72e-73 | 220 |
| MS.gene048743.t1 | AT3G62760 | 43.810 | 210 | 116 | 2 | 1 | 209 | 1 | 209 | 2.12e-57 | 181 |
| MS.gene048743.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 3.88e-55 | 175 |
| MS.gene048743.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 3.88e-55 | 175 |
| MS.gene048743.t1 | AT1G02920 | 43.689 | 206 | 115 | 1 | 3 | 208 | 4 | 208 | 1.27e-54 | 173 |
| MS.gene048743.t1 | AT2G47730 | 42.788 | 208 | 117 | 2 | 5 | 211 | 54 | 260 | 3.85e-52 | 169 |
| MS.gene048743.t1 | AT2G47730 | 42.788 | 208 | 117 | 2 | 5 | 211 | 54 | 260 | 3.85e-52 | 169 |
| MS.gene048743.t1 | AT4G02520 | 41.429 | 210 | 119 | 2 | 3 | 209 | 4 | 212 | 4.74e-52 | 167 |
| MS.gene048743.t1 | AT2G02930 | 41.627 | 209 | 118 | 2 | 3 | 208 | 4 | 211 | 9.19e-51 | 164 |
| MS.gene048743.t1 | AT1G49860 | 44.503 | 191 | 103 | 2 | 20 | 207 | 22 | 212 | 5.81e-50 | 163 |
| MS.gene048743.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 1.72e-49 | 161 |
| MS.gene048743.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 1.72e-49 | 161 |
| MS.gene048743.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 28 | 230 | 1.74e-49 | 161 |
| MS.gene048743.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 38 | 240 | 2.41e-49 | 161 |
| MS.gene048743.t1 | AT2G30860 | 50.323 | 155 | 76 | 1 | 1 | 155 | 1 | 154 | 2.57e-49 | 158 |
| MS.gene048743.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 1.51e-47 | 157 |
| MS.gene048743.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 1.51e-47 | 157 |
| MS.gene048743.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 53 | 256 | 1.71e-47 | 157 |
| MS.gene048743.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 65 | 268 | 2.16e-47 | 157 |
| MS.gene048743.t1 | AT1G02950 | 40.278 | 144 | 84 | 2 | 64 | 206 | 60 | 202 | 2.50e-28 | 106 |
| MS.gene048743.t1 | AT5G41240 | 29.524 | 210 | 139 | 4 | 1 | 204 | 1 | 207 | 1.27e-14 | 72.4 |
| MS.gene048743.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 1.80e-14 | 70.5 |
| MS.gene048743.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 1.80e-14 | 70.5 |
| MS.gene048743.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 1.80e-14 | 70.5 |
| MS.gene048743.t1 | AT1G09640 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 3.63e-14 | 69.7 |
| MS.gene048743.t1 | AT5G41210 | 28.079 | 203 | 139 | 3 | 1 | 197 | 2 | 203 | 1.60e-13 | 67.8 |
| MS.gene048743.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 3.42e-13 | 67.8 |
| MS.gene048743.t1 | AT1G57720 | 27.907 | 172 | 112 | 4 | 40 | 208 | 40 | 202 | 3.42e-13 | 67.8 |
| MS.gene048743.t1 | AT5G41220 | 28.079 | 203 | 139 | 3 | 1 | 197 | 1 | 202 | 6.09e-13 | 67.4 |
| MS.gene048743.t1 | AT1G09640 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 7.69e-13 | 67.0 |
Find 47 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATTGAGGCAGCAAAAT+TGG | 0.165753 | 3.4:+66802042 | MS.gene048743:CDS |
| AATATGGTGGTGAAAGTTTA+TGG | 0.187933 | 3.4:+66799905 | None:intergenic |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.4:+66800986 | MS.gene048743:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.4:+66799998 | MS.gene048743:CDS |
| GCTGATCTTAGCCATCTTCC+TGG | 0.323812 | 3.4:+66802010 | MS.gene048743:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3.4:+66801971 | MS.gene048743:CDS |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3.4:+66802129 | MS.gene048743:CDS |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.4:-66800974 | None:intergenic |
| TCAATAAGATGTTCAATTCC+AGG | 0.412097 | 3.4:-66802028 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.4:+66802043 | MS.gene048743:CDS |
| GAGGGTGATGGCTTGCCTCT+TGG | 0.421689 | 3.4:+66799952 | MS.gene048743:CDS |
| CTGTGATTTGTGTAGAATCA+AGG | 0.424395 | 3.4:+66801699 | MS.gene048743:intron |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.4:-66802124 | None:intergenic |
| CTTCTAAAGTTGTGCCAAGT+AGG | 0.455796 | 3.4:-66801769 | None:intergenic |
| AAAGTTGTGCCAAGTAGGTC+AGG | 0.467376 | 3.4:-66801764 | None:intergenic |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3.4:+66800033 | MS.gene048743:CDS |
| AGAAAGCTGTGGTGGATCAA+TGG | 0.498575 | 3.4:+66801792 | MS.gene048743:CDS |
| AAATTTCTAGTAGGCCAGCT+TGG | 0.510403 | 3.4:+66802110 | MS.gene048743:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.4:+66801988 | MS.gene048743:CDS |
| GGTGGGAGAAAATTTCTAGT+AGG | 0.512715 | 3.4:+66802101 | MS.gene048743:CDS |
| TAGAATCAAGGGCTATTGTA+AGG | 0.513820 | 3.4:+66801711 | MS.gene048743:intron |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3.4:+66802136 | MS.gene048743:CDS |
| GATGTTCAATTCCAGGAAGA+TGG | 0.515702 | 3.4:-66802021 | None:intergenic |
| TGGAATTGAACATCTTATTG+AGG | 0.518417 | 3.4:+66802030 | MS.gene048743:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.4:-66800959 | None:intergenic |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.4:+66800964 | MS.gene048743:CDS |
| GACCGTGGTCCTGACCTACT+TGG | 0.545257 | 3.4:+66801755 | MS.gene048743:CDS |
| TATATACTACCTGGAGGAGA+AGG | 0.549721 | 3.4:-66800042 | None:intergenic |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.4:-66801896 | None:intergenic |
| TGTGATTTGTGTAGAATCAA+GGG | 0.558216 | 3.4:+66801700 | MS.gene048743:intron |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.4:+66800968 | MS.gene048743:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.4:+66802123 | MS.gene048743:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.4:+66802080 | MS.gene048743:CDS |
| TTTAGAAGAGAAAGCTGTGG+TGG | 0.591968 | 3.4:+66801784 | MS.gene048743:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.4:+66802084 | MS.gene048743:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.4:+66802083 | MS.gene048743:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.4:-66800960 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.4:+66802062 | MS.gene048743:CDS |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3.4:+66799934 | MS.gene048743:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3.4:-66800034 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3.4:+66799940 | MS.gene048743:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647043 | 3.4:-66799947 | None:intergenic |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3.4:+66799933 | MS.gene048743:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.697603 | 3.4:+66801781 | MS.gene048743:CDS |
| TGCCAAGTAGGTCAGGACCA+CGG | 0.707978 | 3.4:-66801757 | None:intergenic |
| GCAGCAAAGTATGCAGACCG+TGG | 0.728704 | 3.4:+66801740 | MS.gene048743:CDS |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.4:+66801945 | MS.gene048743:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATATATAATTGTATA+TGG | - | chr3.4:66800737-66800756 | None:intergenic | 10.0% |
| !!! | AGCAAATTTATTATTTTTTA+GGG | - | chr3.4:66801099-66801118 | None:intergenic | 10.0% |
| !!! | TAGCAAATTTATTATTTTTT+AGG | - | chr3.4:66801100-66801119 | None:intergenic | 10.0% |
| !! | AAAAATATTATCGAAGAAAA+AGG | - | chr3.4:66800111-66800130 | None:intergenic | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | + | chr3.4:66800497-66800516 | MS.gene048743:intron | 15.0% |
| !! | TTGAAGGTAAAAAATAATTA+AGG | - | chr3.4:66801149-66801168 | None:intergenic | 15.0% |
| !!! | AAATTTAAATAGTATCGATT+AGG | - | chr3.4:66801263-66801282 | None:intergenic | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | + | chr3.4:66800540-66800559 | MS.gene048743:intron | 15.0% |
| !!! | CTTTTTTTTCTTCTTAAAAA+AGG | + | chr3.4:66800411-66800430 | MS.gene048743:intron | 15.0% |
| !!! | GAGCTTTTAAATATATTATT+AGG | - | chr3.4:66801601-66801620 | None:intergenic | 15.0% |
| !!! | GTTTGTATTTTATAATTCAT+GGG | + | chr3.4:66801531-66801550 | MS.gene048743:intron | 15.0% |
| !!! | TCTTTTTTTATAAAAGTATG+CGG | + | chr3.4:66800438-66800457 | MS.gene048743:intron | 15.0% |
| !!! | TTTAATTTTCATAGTTTCAT+TGG | + | chr3.4:66801509-66801528 | MS.gene048743:intron | 15.0% |
| !! | AAAATATAGTTGAGATATCT+TGG | + | chr3.4:66800363-66800382 | MS.gene048743:intron | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | + | chr3.4:66800496-66800515 | MS.gene048743:intron | 20.0% |
| !! | GCAAAATAAAGTAATATGTT+AGG | + | chr3.4:66801668-66801687 | MS.gene048743:intron | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | + | chr3.4:66801645-66801664 | MS.gene048743:intron | 20.0% |
| !!! | GGTTTGTATTTTATAATTCA+TGG | + | chr3.4:66801530-66801549 | MS.gene048743:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | + | chr3.4:66801646-66801665 | MS.gene048743:intron | 20.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | + | chr3.4:66801869-66801888 | MS.gene048743:CDS | 25.0% |
| ! | GCACAAATATTTACTATGTT+CGG | - | chr3.4:66800664-66800683 | None:intergenic | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | - | chr3.4:66801165-66801184 | None:intergenic | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | + | chr3.4:66801868-66801887 | MS.gene048743:CDS | 25.0% |
| ! | TTTATAGACTATATACTACC+TGG | - | chr3.4:66800054-66800073 | None:intergenic | 25.0% |
| !! | CTGTTAGTTTATTTAAAGAG+AGG | + | chr3.4:66801575-66801594 | MS.gene048743:intron | 25.0% |
| !! | TCTCTCTTTGTTTAAATATG+TGG | - | chr3.4:66801196-66801215 | None:intergenic | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | - | chr3.4:66801182-66801201 | None:intergenic | 25.0% |
| !!! | CTCAACTATATTTTTATGAG+CGG | - | chr3.4:66800357-66800376 | None:intergenic | 25.0% |
| !!! | TAAATAGTATCGATTAGGTA+CGG | - | chr3.4:66801258-66801277 | None:intergenic | 25.0% |
| AACAGATTAACAAGCCAATA+TGG | - | chr3.4:66801560-66801579 | None:intergenic | 30.0% | |
| AATAGACATTACGTCATGTT+AGG | + | chr3.4:66801369-66801388 | MS.gene048743:intron | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | + | chr3.4:66799998-66800017 | MS.gene048743:CDS | 30.0% | |
| TAATTCATGGGTATCCATAT+TGG | + | chr3.4:66801543-66801562 | MS.gene048743:intron | 30.0% | |
| TCAATAAGATGTTCAATTCC+AGG | - | chr3.4:66802031-66802050 | None:intergenic | 30.0% | |
| TGAAGAGAAATGAGTAATTG+TGG | + | chr3.4:66800624-66800643 | MS.gene048743:intron | 30.0% | |
| TGAGCACAAATTTAATTGAG+AGG | - | chr3.4:66801051-66801070 | None:intergenic | 30.0% | |
| TGGAATTGAACATCTTATTG+AGG | + | chr3.4:66802030-66802049 | MS.gene048743:CDS | 30.0% | |
| ! | TGTGATTTGTGTAGAATCAA+GGG | + | chr3.4:66801700-66801719 | MS.gene048743:intron | 30.0% |
| !! | AAATAGTATCGATTAGGTAC+GGG | - | chr3.4:66801257-66801276 | None:intergenic | 30.0% |
| !! | AGAAAGATACAAAAGCATCT+AGG | - | chr3.4:66800086-66800105 | None:intergenic | 30.0% |
| !! | GAAAGATACAAAAGCATCTA+GGG | - | chr3.4:66800085-66800104 | None:intergenic | 30.0% |
| !! | GTTGAGATATCTTGGTTTTT+CGG | + | chr3.4:66800371-66800390 | MS.gene048743:intron | 30.0% |
| ACATTCTCATGAAATACGAG+TGG | - | chr3.4:66800896-66800915 | None:intergenic | 35.0% | |
| ACTCTTTGGTGAGAATTTGT+TGG | + | chr3.4:66801000-66801019 | MS.gene048743:intron | 35.0% | |
| ATAGACTATATACTACCTGG+AGG | - | chr3.4:66800051-66800070 | None:intergenic | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | - | chr3.4:66801445-66801464 | None:intergenic | 35.0% | |
| CATTTCTCTTCACTTAGTGT+AGG | - | chr3.4:66800616-66800635 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | + | chr3.4:66802043-66802062 | MS.gene048743:CDS | 35.0% | |
| TAGAATCAAGGGCTATTGTA+AGG | + | chr3.4:66801711-66801730 | MS.gene048743:intron | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | + | chr3.4:66802042-66802061 | MS.gene048743:CDS | 35.0% | |
| TGCGAAAAATAATTCCCGAA+AGG | + | chr3.4:66800189-66800208 | MS.gene048743:intron | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | + | chr3.4:66802129-66802148 | MS.gene048743:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | + | chr3.4:66801781-66801800 | MS.gene048743:CDS | 35.0% |
| ! | AATTGCGAGCGTTAGATTTT+TGG | - | chr3.4:66800290-66800309 | None:intergenic | 35.0% |
| ! | ATTCTACCTCTTTTTCCAAG+AGG | - | chr3.4:66799970-66799989 | None:intergenic | 35.0% |
| ! | ATTGCGAGCGTTAGATTTTT+GGG | - | chr3.4:66800289-66800308 | None:intergenic | 35.0% |
| ! | CTGTGATTTGTGTAGAATCA+AGG | + | chr3.4:66801699-66801718 | MS.gene048743:intron | 35.0% |
| ! | GTGTCGTTAATGATAAGCAA+CGG | + | chr3.4:66800134-66800153 | MS.gene048743:intron | 35.0% |
| !! | AGATATCTTGGTTTTTCGGA+TGG | + | chr3.4:66800375-66800394 | MS.gene048743:intron | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | - | chr3.4:66801179-66801198 | None:intergenic | 35.0% |
| !! | TCTAAAAGCACTTATCTTGC+TGG | + | chr3.4:66801971-66801990 | MS.gene048743:CDS | 35.0% |
| !!! | CGTTAGATTTTTGGGATTAG+CGG | - | chr3.4:66800281-66800300 | None:intergenic | 35.0% |
| !!! | TTTTTATTTTCGCAGCCCTT+TGG | + | chr3.4:66800944-66800963 | MS.gene048743:intron | 35.0% |
| AAAACTATGAGCTGCTATGC+AGG | - | chr3.4:66800236-66800255 | None:intergenic | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | - | chr3.4:66800977-66800996 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | - | chr3.4:66800962-66800981 | None:intergenic | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | + | chr3.4:66802080-66802099 | MS.gene048743:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | + | chr3.4:66802084-66802103 | MS.gene048743:CDS | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | + | chr3.4:66800986-66801005 | MS.gene048743:CDS | 40.0% | |
| GATGTTCAATTCCAGGAAGA+TGG | - | chr3.4:66802024-66802043 | None:intergenic | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | - | chr3.4:66800963-66800982 | None:intergenic | 40.0% | |
| TAGCGAAGGAAATTATTCCG+AGG | - | chr3.4:66800325-66800344 | None:intergenic | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | - | chr3.4:66800045-66800064 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | - | chr3.4:66801899-66801918 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | + | chr3.4:66801988-66802007 | MS.gene048743:CDS | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | + | chr3.4:66801945-66801964 | MS.gene048743:CDS | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | + | chr3.4:66802062-66802081 | MS.gene048743:CDS | 40.0% | |
| TTTAGAAGAGAAAGCTGTGG+TGG | + | chr3.4:66801784-66801803 | MS.gene048743:CDS | 40.0% | |
| ! | CAATTTGTTCGCAATAGCCT+CGG | + | chr3.4:66800305-66800324 | MS.gene048743:intron | 40.0% |
| ! | TTTGGGATTAGCGGAATACA+AGG | - | chr3.4:66800272-66800291 | None:intergenic | 40.0% |
| !! | AAATTTCTAGTAGGCCAGCT+TGG | + | chr3.4:66802110-66802129 | MS.gene048743:CDS | 40.0% |
| !! | AACAAAGAGAGAGCACCAAT+TGG | + | chr3.4:66801204-66801223 | MS.gene048743:intron | 40.0% |
| !! | ACAAAGAGAGAGCACCAATT+GGG | + | chr3.4:66801205-66801224 | MS.gene048743:intron | 40.0% |
| !! | CTTCTAAAGTTGTGCCAAGT+AGG | - | chr3.4:66801772-66801791 | None:intergenic | 40.0% |
| !! | GGTGGGAGAAAATTTCTAGT+AGG | + | chr3.4:66802101-66802120 | MS.gene048743:CDS | 40.0% |
| AAAGTTGTGCCAAGTAGGTC+AGG | - | chr3.4:66801767-66801786 | None:intergenic | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | + | chr3.4:66800968-66800987 | MS.gene048743:CDS | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | + | chr3.4:66801878-66801897 | MS.gene048743:CDS | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | + | chr3.4:66802083-66802102 | MS.gene048743:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | + | chr3.4:66799934-66799953 | MS.gene048743:CDS | 45.0% | |
| TACGTGTGTCGCAAACCTTT+CGG | - | chr3.4:66800207-66800226 | None:intergenic | 45.0% | |
| TAGCGGAATACAAGGATGGT+TGG | - | chr3.4:66800264-66800283 | None:intergenic | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | - | chr3.4:66802127-66802146 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | + | chr3.4:66800964-66800983 | MS.gene048743:CDS | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | + | chr3.4:66799933-66799952 | MS.gene048743:CDS | 45.0% | |
| ! | GGATTAGCGGAATACAAGGA+TGG | - | chr3.4:66800268-66800287 | None:intergenic | 45.0% |
| ! | TCTCCAGGCTTACCCATTTT+TGG | - | chr3.4:66801884-66801903 | None:intergenic | 45.0% |
| !! | AGAAAGCTGTGGTGGATCAA+TGG | + | chr3.4:66801792-66801811 | MS.gene048743:CDS | 45.0% |
| !! | GTATCGATTAGGTACGGGTT+TGG | - | chr3.4:66801252-66801271 | None:intergenic | 45.0% |
| ACGTGTGTCGCAAACCTTTC+GGG | - | chr3.4:66800206-66800225 | None:intergenic | 50.0% | |
| ATTGGGACGACATGACCACA+TGG | + | chr3.4:66801222-66801241 | MS.gene048743:intron | 50.0% | |
| GCCAGCTTGGAAGAAGTTGA+AGG | + | chr3.4:66802123-66802142 | MS.gene048743:CDS | 50.0% | |
| GCTGATCTTAGCCATCTTCC+TGG | + | chr3.4:66802010-66802029 | MS.gene048743:CDS | 50.0% | |
| GGCTTGCCTCTTGGAAAAAG+AGG | + | chr3.4:66799961-66799980 | MS.gene048743:CDS | 50.0% | |
| TGTGGTCATGTCGTCCCAAT+TGG | - | chr3.4:66801222-66801241 | None:intergenic | 50.0% | |
| TTGGGACGACATGACCACAT+GGG | + | chr3.4:66801223-66801242 | MS.gene048743:intron | 50.0% | |
| ! | TACGGGTTTGGTATCCCATG+TGG | - | chr3.4:66801240-66801259 | None:intergenic | 50.0% |
| !! | AGCGGTGCTATTGATAGCGA+AGG | - | chr3.4:66800339-66800358 | None:intergenic | 50.0% |
| ACCTGAGTTCCTTCTCCTCC+AGG | + | chr3.4:66800033-66800052 | MS.gene048743:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | - | chr3.4:66800037-66800056 | None:intergenic | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | + | chr3.4:66799940-66799959 | MS.gene048743:CDS | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | + | chr3.4:66801740-66801759 | MS.gene048743:CDS | 55.0% | |
| TGCCAAGTAGGTCAGGACCA+CGG | - | chr3.4:66801760-66801779 | None:intergenic | 55.0% | |
| AGGCAAGCCATCACCCTCTG+AGG | - | chr3.4:66799950-66799969 | None:intergenic | 60.0% | |
| GACCGTGGTCCTGACCTACT+TGG | + | chr3.4:66801755-66801774 | MS.gene048743:CDS | 60.0% | |
| ! | GAGGGTGATGGCTTGCCTCT+TGG | + | chr3.4:66799952-66799971 | MS.gene048743:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66799908 | 66802156 | 66799908 | ID=MS.gene048743 |
| chr3.4 | mRNA | 66799908 | 66802156 | 66799908 | ID=MS.gene048743.t1;Parent=MS.gene048743 |
| chr3.4 | exon | 66799908 | 66800054 | 66799908 | ID=MS.gene048743.t1.exon1;Parent=MS.gene048743.t1 |
| chr3.4 | CDS | 66799908 | 66800054 | 66799908 | ID=cds.MS.gene048743.t1;Parent=MS.gene048743.t1 |
| chr3.4 | exon | 66800959 | 66801007 | 66800959 | ID=MS.gene048743.t1.exon2;Parent=MS.gene048743.t1 |
| chr3.4 | CDS | 66800959 | 66801007 | 66800959 | ID=cds.MS.gene048743.t1;Parent=MS.gene048743.t1 |
| chr3.4 | exon | 66801714 | 66802156 | 66801714 | ID=MS.gene048743.t1.exon3;Parent=MS.gene048743.t1 |
| chr3.4 | CDS | 66801714 | 66802156 | 66801714 | ID=cds.MS.gene048743.t1;Parent=MS.gene048743.t1 |
| Gene Sequence |
| Protein sequence |
