Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061566.t1 | AUW37509.1 | 99.5 | 212 | 1 | 0 | 1 | 212 | 1 | 212 | 8.30E-118 | 433 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061566.t1 | Q96324 | 59.0 | 212 | 87 | 0 | 1 | 212 | 1 | 212 | 1.5e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061566.t1 | A0A2Z2Z7E2 | 99.5 | 212 | 1 | 0 | 1 | 212 | 1 | 212 | 6.0e-118 | 433.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04976 | MS.gene061566 | 0.87542 | 3.13E-68 | -1.69E-46 |
| MS.gene05016 | MS.gene061566 | 0.893199 | 7.85E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04976 | MS.gene061566 | PPI |
| MS.gene005621 | MS.gene061566 | PPI |
| MS.gene061566 | MS.gene69499 | PPI |
| MS.gene061566 | MS.gene69505 | PPI |
| MS.gene061566 | MS.gene07192 | PPI |
| MS.gene008337 | MS.gene061566 | PPI |
| MS.gene038277 | MS.gene061566 | PPI |
| MS.gene20711 | MS.gene061566 | PPI |
| MS.gene008334 | MS.gene061566 | PPI |
| MS.gene008278 | MS.gene061566 | PPI |
| MS.gene061566 | MS.gene049699 | PPI |
| MS.gene019181 | MS.gene061566 | PPI |
| MS.gene061566 | MS.gene22196 | PPI |
| MS.gene017060 | MS.gene061566 | PPI |
| MS.gene019183 | MS.gene061566 | PPI |
| MS.gene22195 | MS.gene061566 | PPI |
| MS.gene061566 | MS.gene48030 | PPI |
| MS.gene061566 | MS.gene049706 | PPI |
| MS.gene048743 | MS.gene061566 | PPI |
| MS.gene000510 | MS.gene061566 | PPI |
| MS.gene47714 | MS.gene061566 | PPI |
| MS.gene061566 | MS.gene22188 | PPI |
| MS.gene061566 | MS.gene048703 | PPI |
| MS.gene061566 | MS.gene83384 | PPI |
| MS.gene061566 | MS.gene48032 | PPI |
| MS.gene03034 | MS.gene061566 | PPI |
| MS.gene061566 | MS.gene017062 | PPI |
| MS.gene061566 | MS.gene05016 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061566.t1 | MTR_3g064700 | 99.057 | 212 | 2 | 0 | 1 | 212 | 1 | 212 | 1.53e-157 | 434 |
| MS.gene061566.t1 | MTR_3g450930 | 56.872 | 211 | 90 | 1 | 1 | 211 | 1 | 210 | 2.19e-88 | 259 |
| MS.gene061566.t1 | MTR_3g450790 | 58.294 | 211 | 87 | 1 | 1 | 211 | 1 | 210 | 6.01e-87 | 256 |
| MS.gene061566.t1 | MTR_5g090920 | 55.399 | 213 | 89 | 4 | 1 | 210 | 1 | 210 | 2.15e-79 | 236 |
| MS.gene061566.t1 | MTR_5g090910 | 52.113 | 213 | 98 | 3 | 1 | 211 | 1 | 211 | 5.55e-75 | 225 |
| MS.gene061566.t1 | MTR_1g026140 | 45.794 | 214 | 111 | 2 | 3 | 211 | 5 | 218 | 2.02e-61 | 191 |
| MS.gene061566.t1 | MTR_1g088840 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 4.19e-59 | 185 |
| MS.gene061566.t1 | MTR_1g088825 | 43.961 | 207 | 115 | 1 | 2 | 208 | 3 | 208 | 4.19e-59 | 185 |
| MS.gene061566.t1 | MTR_1g088845 | 44.928 | 207 | 113 | 1 | 2 | 208 | 3 | 208 | 5.24e-58 | 182 |
| MS.gene061566.t1 | MTR_1g088850 | 42.584 | 209 | 118 | 2 | 1 | 208 | 1 | 208 | 1.45e-55 | 176 |
| MS.gene061566.t1 | MTR_5g090910 | 50.676 | 148 | 70 | 2 | 66 | 211 | 8 | 154 | 6.97e-46 | 149 |
| MS.gene061566.t1 | MTR_1g088840 | 44.444 | 162 | 89 | 1 | 47 | 208 | 1 | 161 | 1.92e-45 | 149 |
| MS.gene061566.t1 | MTR_1g088840 | 42.727 | 110 | 62 | 1 | 99 | 208 | 4 | 112 | 9.42e-25 | 94.4 |
| MS.gene061566.t1 | MTR_8g098420 | 27.957 | 186 | 131 | 1 | 1 | 183 | 1 | 186 | 1.94e-14 | 68.9 |
| MS.gene061566.t1 | MTR_8g098420 | 28.070 | 171 | 120 | 1 | 1 | 168 | 1 | 171 | 4.19e-14 | 69.3 |
| MS.gene061566.t1 | MTR_2g005570 | 30.233 | 172 | 107 | 6 | 40 | 208 | 42 | 203 | 1.97e-13 | 68.6 |
| MS.gene061566.t1 | MTR_2g005570 | 30.233 | 172 | 107 | 6 | 40 | 208 | 42 | 203 | 2.25e-13 | 68.6 |
| MS.gene061566.t1 | MTR_4g134770 | 33.333 | 132 | 74 | 4 | 40 | 167 | 40 | 161 | 3.65e-12 | 65.1 |
| MS.gene061566.t1 | MTR_4g134770 | 33.333 | 132 | 74 | 4 | 40 | 167 | 5 | 126 | 4.88e-12 | 64.3 |
| MS.gene061566.t1 | MTR_1g492670 | 46.032 | 63 | 33 | 1 | 146 | 208 | 2 | 63 | 5.22e-12 | 59.7 |
| MS.gene061566.t1 | MTR_3g058940 | 27.059 | 170 | 115 | 5 | 40 | 208 | 40 | 201 | 8.02e-12 | 63.9 |
| MS.gene061566.t1 | MTR_4g134380 | 28.358 | 201 | 125 | 5 | 5 | 202 | 18 | 202 | 1.78e-11 | 61.6 |
| MS.gene061566.t1 | MTR_4g134370 | 34.906 | 106 | 68 | 1 | 5 | 110 | 18 | 122 | 2.40e-11 | 61.2 |
| MS.gene061566.t1 | MTR_4g134380 | 33.019 | 106 | 70 | 1 | 5 | 110 | 18 | 122 | 4.41e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061566.t1 | AT3G03190 | 58.962 | 212 | 87 | 0 | 1 | 212 | 1 | 212 | 2.70e-93 | 272 |
| MS.gene061566.t1 | AT5G17220 | 55.189 | 212 | 95 | 0 | 1 | 212 | 1 | 212 | 3.34e-89 | 261 |
| MS.gene061566.t1 | AT2G30870 | 51.442 | 208 | 100 | 1 | 1 | 208 | 1 | 207 | 7.15e-75 | 225 |
| MS.gene061566.t1 | AT2G30860 | 51.208 | 207 | 100 | 1 | 1 | 207 | 1 | 206 | 3.23e-72 | 218 |
| MS.gene061566.t1 | AT3G62760 | 43.810 | 210 | 116 | 2 | 1 | 209 | 1 | 209 | 3.57e-57 | 180 |
| MS.gene061566.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 1.63e-54 | 173 |
| MS.gene061566.t1 | AT1G02930 | 43.204 | 206 | 115 | 2 | 3 | 208 | 4 | 207 | 1.63e-54 | 173 |
| MS.gene061566.t1 | AT1G02920 | 43.689 | 206 | 115 | 1 | 3 | 208 | 4 | 208 | 5.73e-54 | 172 |
| MS.gene061566.t1 | AT2G47730 | 42.308 | 208 | 118 | 2 | 5 | 211 | 54 | 260 | 1.59e-51 | 167 |
| MS.gene061566.t1 | AT2G47730 | 42.308 | 208 | 118 | 2 | 5 | 211 | 54 | 260 | 1.59e-51 | 167 |
| MS.gene061566.t1 | AT4G02520 | 41.429 | 210 | 119 | 2 | 3 | 209 | 4 | 212 | 1.75e-51 | 166 |
| MS.gene061566.t1 | AT2G02930 | 41.627 | 209 | 118 | 2 | 3 | 208 | 4 | 211 | 3.07e-50 | 162 |
| MS.gene061566.t1 | AT1G49860 | 43.979 | 191 | 104 | 2 | 20 | 207 | 22 | 212 | 2.48e-49 | 161 |
| MS.gene061566.t1 | AT2G30860 | 50.323 | 155 | 76 | 1 | 1 | 155 | 1 | 154 | 3.16e-49 | 158 |
| MS.gene061566.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 5.72e-49 | 160 |
| MS.gene061566.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 26 | 228 | 5.72e-49 | 160 |
| MS.gene061566.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 28 | 230 | 5.86e-49 | 160 |
| MS.gene061566.t1 | AT1G02950 | 42.647 | 204 | 115 | 2 | 4 | 206 | 38 | 240 | 7.75e-49 | 160 |
| MS.gene061566.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 6.07e-47 | 155 |
| MS.gene061566.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 40 | 243 | 6.07e-47 | 155 |
| MS.gene061566.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 53 | 256 | 9.61e-47 | 155 |
| MS.gene061566.t1 | AT1G02940 | 39.024 | 205 | 123 | 2 | 4 | 207 | 65 | 268 | 9.66e-47 | 155 |
| MS.gene061566.t1 | AT1G02950 | 40.278 | 144 | 84 | 2 | 64 | 206 | 60 | 202 | 6.53e-28 | 105 |
| MS.gene061566.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 8.48e-15 | 71.6 |
| MS.gene061566.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 8.48e-15 | 71.6 |
| MS.gene061566.t1 | AT1G77290 | 24.051 | 237 | 148 | 6 | 3 | 208 | 1 | 236 | 8.48e-15 | 71.6 |
| MS.gene061566.t1 | AT5G41240 | 28.708 | 209 | 142 | 3 | 1 | 204 | 1 | 207 | 2.49e-14 | 71.6 |
| MS.gene061566.t1 | AT1G09640 | 28.796 | 191 | 123 | 4 | 27 | 211 | 22 | 205 | 3.77e-14 | 69.7 |
| MS.gene061566.t1 | AT5G41210 | 27.228 | 202 | 142 | 2 | 1 | 197 | 2 | 203 | 3.27e-13 | 67.0 |
| MS.gene061566.t1 | AT1G57720 | 28.235 | 170 | 114 | 3 | 40 | 208 | 40 | 202 | 3.38e-13 | 68.2 |
| MS.gene061566.t1 | AT1G57720 | 28.235 | 170 | 114 | 3 | 40 | 208 | 40 | 202 | 3.38e-13 | 68.2 |
| MS.gene061566.t1 | AT1G09640 | 28.191 | 188 | 122 | 4 | 27 | 208 | 22 | 202 | 8.62e-13 | 66.6 |
| MS.gene061566.t1 | AT5G41220 | 26.606 | 218 | 153 | 3 | 1 | 211 | 1 | 218 | 1.07e-12 | 66.6 |
Find 46 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATGGTGGTTAAAGTTTA+TGG | 0.134206 | 3.2:-60198929 | MS.gene061566:CDS |
| TCTTATTGAGGCAGCAAAAT+TGG | 0.186477 | 3.2:-60196729 | MS.gene061566:CDS |
| CTTAGTCATCTTCCTGGAAT+TGG | 0.292656 | 3.2:-60196755 | MS.gene061566:CDS |
| GATGGTGATTTCAGACTCTT+TGG | 0.307785 | 3.2:-60197771 | MS.gene061566:intron |
| GCTGATCTTAGTCATCTTCC+TGG | 0.315615 | 3.2:-60196761 | MS.gene061566:CDS |
| GTGCATATTGATCTTGATAA+AGG | 0.322979 | 3.2:-60198836 | MS.gene061566:CDS |
| TCTAAAAGCACTTATCTTGC+TGG | 0.332817 | 3.2:-60196800 | MS.gene061566:CDS |
| TTGGAAGAAGTTGAAGGAAT+TGG | 0.377135 | 3.2:-60196642 | MS.gene061566:CDS |
| AAATCACCATCCTCTACAAC+TGG | 0.411376 | 3.2:+60197783 | None:intergenic |
| CTTATTGAGGCAGCAAAATT+GGG | 0.415280 | 3.2:-60196728 | MS.gene061566:CDS |
| CTGTGATTTGTGTAGAATCA+AGG | 0.424395 | 3.2:-60197072 | MS.gene061566:intron |
| TCCTTCAACTTCTTCCAAGC+TGG | 0.444171 | 3.2:+60196647 | None:intergenic |
| TCAATAAGATGTCCAATTCC+AGG | 0.451011 | 3.2:+60196743 | None:intergenic |
| CTTCTAAAGTTGTGCCAAGT+AGG | 0.455796 | 3.2:+60197002 | None:intergenic |
| AAAGTTGTGCCAAGTAGGTC+AGG | 0.467376 | 3.2:+60197007 | None:intergenic |
| GAATTTCTAGTAGGCCAGCT+TGG | 0.468880 | 3.2:-60196661 | MS.gene061566:CDS |
| ACCTGAGTTCCTTCTCCTCC+AGG | 0.473534 | 3.2:-60198801 | MS.gene061566:intron |
| AGAAAGCTGTGGTGGATCAA+TGG | 0.498575 | 3.2:-60196979 | MS.gene061566:CDS |
| TGCTGGTGATAAGTTCACTT+TGG | 0.510705 | 3.2:-60196783 | MS.gene061566:CDS |
| TAGAATCAAGGGCTATTGTA+AGG | 0.513820 | 3.2:-60197060 | MS.gene061566:CDS |
| AAGTTGAAGGAATTGGCATA+AGG | 0.515297 | 3.2:-60196635 | None:intergenic |
| GGTGGGAGAGAATTTCTAGT+AGG | 0.533043 | 3.2:-60196670 | MS.gene061566:CDS |
| ACAACTGGAACTTGACCAAA+GGG | 0.534533 | 3.2:+60197798 | None:intergenic |
| TATATACTACCTGGAGGAGA+AGG | 0.540663 | 3.2:+60198792 | None:intergenic |
| TGGTCAAGTTCCAGTTGTAG+AGG | 0.543144 | 3.2:-60197793 | MS.gene061566:CDS |
| GACCGTGGTCCTGACCTACT+TGG | 0.545257 | 3.2:-60197016 | MS.gene061566:CDS |
| TGAGCTATAGTTATGTCTCC+AGG | 0.558174 | 3.2:+60196875 | None:intergenic |
| TGTGATTTGTGTAGAATCAA+GGG | 0.558216 | 3.2:-60197071 | MS.gene061566:intron |
| CAAGTTCCAGTTGTAGAGGA+TGG | 0.575857 | 3.2:-60197789 | MS.gene061566:CDS |
| GCCAGCTTGGAAGAAGTTGA+AGG | 0.576600 | 3.2:-60196648 | MS.gene061566:CDS |
| AGAGGAAGAATGTGAATGCT+TGG | 0.577760 | 3.2:-60196691 | MS.gene061566:CDS |
| TTTAGAAGAGAAAGCTGTGG+TGG | 0.591968 | 3.2:-60196987 | MS.gene061566:CDS |
| TGGAATTGGACATCTTATTG+AGG | 0.594707 | 3.2:-60196741 | MS.gene061566:CDS |
| GAAGAATGTGAATGCTTGGT+GGG | 0.598085 | 3.2:-60196687 | MS.gene061566:CDS |
| GGAAGAATGTGAATGCTTGG+TGG | 0.600496 | 3.2:-60196688 | MS.gene061566:CDS |
| TACAACTGGAACTTGACCAA+AGG | 0.607365 | 3.2:+60197797 | None:intergenic |
| TGGGACATTTGATTAGTGAG+AGG | 0.608261 | 3.2:-60196709 | MS.gene061566:CDS |
| TAATGCAGCATGTCCTCAGA+GGG | 0.631190 | 3.2:-60198900 | MS.gene061566:CDS |
| ACCTGGAGGAGAAGGAACTC+AGG | 0.631815 | 3.2:+60198800 | None:intergenic |
| AGCATGTCCTCAGAGGGTGA+TGG | 0.631871 | 3.2:-60198894 | MS.gene061566:CDS |
| AGGCAAGCCATCACCCTCTG+AGG | 0.647961 | 3.2:+60198887 | None:intergenic |
| TTAATGCAGCATGTCCTCAG+AGG | 0.685889 | 3.2:-60198901 | MS.gene061566:CDS |
| AACTTTAGAAGAGAAAGCTG+TGG | 0.697603 | 3.2:-60196990 | MS.gene061566:CDS |
| TGCCAAGTAGGTCAGGACCA+CGG | 0.707978 | 3.2:+60197014 | None:intergenic |
| GCAGCAAAGTATGCAGACCG+TGG | 0.728704 | 3.2:-60197031 | MS.gene061566:CDS |
| TGCTTGATGTGTATGAACGT+AGG | 0.749850 | 3.2:-60196826 | MS.gene061566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATATAATAAATTAAGA+GGG | + | chr3.2:60197318-60197337 | None:intergenic | 10.0% |
| !!! | AAAAAATTACAAAAATTTTG+GGG | + | chr3.2:60197287-60197306 | None:intergenic | 10.0% |
| !! | AAAAAATTGCACAATTTATA+AGG | + | chr3.2:60197341-60197360 | None:intergenic | 15.0% |
| !! | AAAAATTGCACAATTTATAA+GGG | + | chr3.2:60197340-60197359 | None:intergenic | 15.0% |
| !! | AGTGTTAATTAATTAAAAGT+GGG | - | chr3.2:60197028-60197047 | MS.gene061566:CDS | 15.0% |
| !! | CTAGAATTATTATAAAGTTT+GGG | + | chr3.2:60197430-60197449 | None:intergenic | 15.0% |
| !! | GGTTTATATAATAAATTAAG+AGG | + | chr3.2:60197319-60197338 | None:intergenic | 15.0% |
| !!! | AAAATATAGTTGAGATATTT+TGG | - | chr3.2:60196896-60196915 | MS.gene061566:CDS | 15.0% |
| !!! | AGATTTATTATATTGATTGA+TGG | - | chr3.2:60197127-60197146 | MS.gene061566:intron | 15.0% |
| !!! | GAGCTTTTAAATATATTATT+AGG | + | chr3.2:60198393-60198412 | None:intergenic | 15.0% |
| !!! | GTTTGTATTTTATAATTCAT+GGG | - | chr3.2:60198323-60198342 | MS.gene061566:intron | 15.0% |
| !!! | TTTAATTTTCATAGTTTCAT+TGG | - | chr3.2:60198301-60198320 | MS.gene061566:intron | 15.0% |
| !!! | TTTCTCCTTTTTTTTTATAA+AGG | - | chr3.2:60196967-60196986 | MS.gene061566:CDS | 15.0% |
| !!! | TTTTCATTATGATAATTGTT+TGG | + | chr3.2:60198209-60198228 | None:intergenic | 15.0% |
| !! | AAGAAAAATTGATTACATGA+TGG | + | chr3.2:60197738-60197757 | None:intergenic | 20.0% |
| !! | AGATTCTTAAATTTGTATGT+AGG | + | chr3.2:60197000-60197019 | None:intergenic | 20.0% |
| !! | CACAAAATATTTACTATGTT+GGG | + | chr3.2:60197466-60197485 | None:intergenic | 20.0% |
| !! | GAGTGTTAATTAATTAAAAG+TGG | - | chr3.2:60197027-60197046 | MS.gene061566:CDS | 20.0% |
| !! | GATTCTTAAATTTGTATGTA+GGG | + | chr3.2:60196999-60197018 | None:intergenic | 20.0% |
| !! | GCTAGAATTATTATAAAGTT+TGG | + | chr3.2:60197431-60197450 | None:intergenic | 20.0% |
| !! | TTGAAGGTAAGAAATAATTA+AGG | + | chr3.2:60197925-60197944 | None:intergenic | 20.0% |
| !! | TTTATAAACTATATACTACC+TGG | + | chr3.2:60196783-60196802 | None:intergenic | 20.0% |
| !!! | AGAAAAATACAAAAGTATCT+AGG | + | chr3.2:60196815-60196834 | None:intergenic | 20.0% |
| !!! | AGTAACATGTTATTTTTTCT+AGG | - | chr3.2:60198437-60198456 | MS.gene061566:intron | 20.0% |
| !!! | GAAAAATACAAAAGTATCTA+GGG | + | chr3.2:60196814-60196833 | None:intergenic | 20.0% |
| !!! | GGTTTGTATTTTATAATTCA+TGG | - | chr3.2:60198322-60198341 | MS.gene061566:intron | 20.0% |
| !!! | GTAACATGTTATTTTTTCTA+GGG | - | chr3.2:60198438-60198457 | MS.gene061566:intron | 20.0% |
| ! | AATATCTCGTACAACTAAAA+TGG | + | chr3.2:60197499-60197518 | None:intergenic | 25.0% |
| ! | AATTTGCAACACATTTATAG+AGG | + | chr3.2:60197401-60197420 | None:intergenic | 25.0% |
| ! | CTTGTAATTCTACCAAAAAT+GGG | - | chr3.2:60198661-60198680 | MS.gene061566:intron | 25.0% |
| ! | GCAAAATAAAGTAACATGTT+AGG | - | chr3.2:60198460-60198479 | MS.gene061566:intron | 25.0% |
| ! | GCACAAAATATTTACTATGT+TGG | + | chr3.2:60197467-60197486 | None:intergenic | 25.0% |
| ! | GCACACCTTTATAAAAAAAA+AGG | + | chr3.2:60196975-60196994 | None:intergenic | 25.0% |
| ! | TATTGGTGGAATATAATTGA+AGG | + | chr3.2:60197941-60197960 | None:intergenic | 25.0% |
| ! | TCTTGTAATTCTACCAAAAA+TGG | - | chr3.2:60198660-60198679 | MS.gene061566:intron | 25.0% |
| ! | TTCTTTAACGAAAACAATCA+TGG | + | chr3.2:60197162-60197181 | None:intergenic | 25.0% |
| ! | TTTAAAAATGTGCATCCAAA+GGG | - | chr3.2:60197235-60197254 | MS.gene061566:intron | 25.0% |
| !! | CTGTTAGTTTATTTAAAGAG+AGG | - | chr3.2:60198367-60198386 | MS.gene061566:intron | 25.0% |
| !!! | AATATGTGGTGTTGATTTAT+TGG | + | chr3.2:60197958-60197977 | None:intergenic | 25.0% |
| !!! | TTGAGATATTTTGGTTTGTT+GGG | - | chr3.2:60196905-60196924 | MS.gene061566:CDS | 25.0% |
| !!! | TTTTTTTAGAGTGTCATGTT+AGG | - | chr3.2:60198165-60198184 | MS.gene061566:intron | 25.0% |
| AACAGATTAACAAGCCAATA+TGG | + | chr3.2:60198352-60198371 | None:intergenic | 30.0% | |
| ATAAACTATATACTACCTGG+AGG | + | chr3.2:60196780-60196799 | None:intergenic | 30.0% | |
| CGAGTAGAATCAAAGATATA+TGG | + | chr3.2:60197686-60197705 | None:intergenic | 30.0% | |
| GTGCATATTGATCTTGATAA+AGG | - | chr3.2:60196727-60196746 | MS.gene061566:CDS | 30.0% | |
| GTTTAAAAATGTGCATCCAA+AGG | - | chr3.2:60197234-60197253 | MS.gene061566:intron | 30.0% | |
| TAATTCATGGGTATCCATAT+TGG | - | chr3.2:60198335-60198354 | MS.gene061566:intron | 30.0% | |
| TCTCTCTTGGTTTAAATATG+TGG | + | chr3.2:60197972-60197991 | None:intergenic | 30.0% | |
| TGAAGAGAAATGAGTAATTG+TGG | - | chr3.2:60197212-60197231 | MS.gene061566:intron | 30.0% | |
| ! | ATTCTACCTCTTTTTCTAAG+AGG | + | chr3.2:60196699-60196718 | None:intergenic | 30.0% |
| ! | TGTGATTTGTGTAGAATCAA+GGG | - | chr3.2:60198492-60198511 | MS.gene061566:intron | 30.0% |
| !! | GACTTTAAAGAGTATCGATT+AGG | + | chr3.2:60198039-60198058 | None:intergenic | 30.0% |
| !! | TAAAGAGTATCGATTAGGTA+CGG | + | chr3.2:60198034-60198053 | None:intergenic | 30.0% |
| !! | TTTTGAGTGTCGTAAATGAT+AGG | - | chr3.2:60196857-60196876 | MS.gene061566:CDS | 30.0% |
| !!! | GTTGAGATATTTTGGTTTGT+TGG | - | chr3.2:60196904-60196923 | MS.gene061566:CDS | 30.0% |
| ACTCTTTGGTGAGAATTTGT+TGG | - | chr3.2:60197806-60197825 | MS.gene061566:intron | 35.0% | |
| ATATTTGCGTGAGCTTTCTA+AGG | + | chr3.2:60198237-60198256 | None:intergenic | 35.0% | |
| ATTTACTATGTTGGGTGTAG+TGG | + | chr3.2:60197458-60197477 | None:intergenic | 35.0% | |
| CATTTCTCTTCACTTAGTGT+AGG | + | chr3.2:60197204-60197223 | None:intergenic | 35.0% | |
| CTTATTGAGGCAGCAAAATT+GGG | - | chr3.2:60198835-60198854 | MS.gene061566:CDS | 35.0% | |
| TAGAATCAAGGGCTATTGTA+AGG | - | chr3.2:60198503-60198522 | MS.gene061566:intron | 35.0% | |
| TCAATAAGATGTCCAATTCC+AGG | + | chr3.2:60198823-60198842 | None:intergenic | 35.0% | |
| TCTTATTGAGGCAGCAAAAT+TGG | - | chr3.2:60198834-60198853 | MS.gene061566:CDS | 35.0% | |
| TGGAATTGGACATCTTATTG+AGG | - | chr3.2:60198822-60198841 | MS.gene061566:CDS | 35.0% | |
| TTGGAAGAAGTTGAAGGAAT+TGG | - | chr3.2:60198921-60198940 | MS.gene061566:CDS | 35.0% | |
| ! | AACTTTAGAAGAGAAAGCTG+TGG | - | chr3.2:60198573-60198592 | MS.gene061566:intron | 35.0% |
| ! | CTGTGATTTGTGTAGAATCA+AGG | - | chr3.2:60198491-60198510 | MS.gene061566:intron | 35.0% |
| ! | TTTTTCTTTTTGCAGCCCTT+TGG | - | chr3.2:60197750-60197769 | MS.gene061566:intron | 35.0% |
| !! | AAAGAGTATCGATTAGGTAC+GGG | + | chr3.2:60198033-60198052 | None:intergenic | 35.0% |
| !! | ATGTGGTGTTGATTTATTGG+TGG | + | chr3.2:60197955-60197974 | None:intergenic | 35.0% |
| !! | TCTAAAAGCACTTATCTTGC+TGG | - | chr3.2:60198763-60198782 | MS.gene061566:intron | 35.0% |
| !!! | AGATATTTTGGTTTGTTGGG+TGG | - | chr3.2:60196908-60196927 | MS.gene061566:CDS | 35.0% |
| !!! | TTACAAAAATTTTGGGGCAG+AGG | + | chr3.2:60197281-60197300 | None:intergenic | 35.0% |
| AAAAATGTGCATCCAAAGGG+CGG | - | chr3.2:60197238-60197257 | MS.gene061566:intron | 40.0% | |
| AAATCACCATCCTCTACAAC+TGG | + | chr3.2:60197783-60197802 | None:intergenic | 40.0% | |
| ACAACTGGAACTTGACCAAA+GGG | + | chr3.2:60197768-60197787 | None:intergenic | 40.0% | |
| AGAGGAAGAATGTGAATGCT+TGG | - | chr3.2:60198872-60198891 | MS.gene061566:CDS | 40.0% | |
| CTTAGTCATCTTCCTGGAAT+TGG | - | chr3.2:60198808-60198827 | MS.gene061566:CDS | 40.0% | |
| GAAGAATGTGAATGCTTGGT+GGG | - | chr3.2:60198876-60198895 | MS.gene061566:CDS | 40.0% | |
| GACAGACATTACGTCATGTT+AGG | - | chr3.2:60198139-60198158 | MS.gene061566:intron | 40.0% | |
| GATGGTGATTTCAGACTCTT+TGG | - | chr3.2:60197792-60197811 | MS.gene061566:CDS | 40.0% | |
| TACAACTGGAACTTGACCAA+AGG | + | chr3.2:60197769-60197788 | None:intergenic | 40.0% | |
| TATATACTACCTGGAGGAGA+AGG | + | chr3.2:60196774-60196793 | None:intergenic | 40.0% | |
| TGAGCTATAGTTATGTCTCC+AGG | + | chr3.2:60198691-60198710 | None:intergenic | 40.0% | |
| TGCTGGTGATAAGTTCACTT+TGG | - | chr3.2:60198780-60198799 | MS.gene061566:intron | 40.0% | |
| TGCTTGATGTGTATGAACGT+AGG | - | chr3.2:60198737-60198756 | MS.gene061566:intron | 40.0% | |
| TGGGACATTTGATTAGTGAG+AGG | - | chr3.2:60198854-60198873 | MS.gene061566:CDS | 40.0% | |
| TTTAGAAGAGAAAGCTGTGG+TGG | - | chr3.2:60198576-60198595 | MS.gene061566:intron | 40.0% | |
| !! | CTTCTAAAGTTGTGCCAAGT+AGG | + | chr3.2:60198564-60198583 | None:intergenic | 40.0% |
| AAAGTTGTGCCAAGTAGGTC+AGG | + | chr3.2:60198559-60198578 | None:intergenic | 45.0% | |
| CAAGTTCCAGTTGTAGAGGA+TGG | - | chr3.2:60197774-60197793 | MS.gene061566:CDS | 45.0% | |
| CTACCAAAAATGGGTAAGCC+TGG | - | chr3.2:60198670-60198689 | MS.gene061566:intron | 45.0% | |
| GCTGATCTTAGTCATCTTCC+TGG | - | chr3.2:60198802-60198821 | MS.gene061566:CDS | 45.0% | |
| GGAAGAATGTGAATGCTTGG+TGG | - | chr3.2:60198875-60198894 | MS.gene061566:CDS | 45.0% | |
| GGCTTGCCTCTTAGAAAAAG+AGG | - | chr3.2:60196690-60196709 | MS.gene061566:CDS | 45.0% | |
| TAATGCAGCATGTCCTCAGA+GGG | - | chr3.2:60196663-60196682 | MS.gene061566:CDS | 45.0% | |
| TACTATGTTGGGTGTAGTGG+CGG | + | chr3.2:60197455-60197474 | None:intergenic | 45.0% | |
| TCCTTCAACTTCTTCCAAGC+TGG | + | chr3.2:60198919-60198938 | None:intergenic | 45.0% | |
| TGGTCAAGTTCCAGTTGTAG+AGG | - | chr3.2:60197770-60197789 | MS.gene061566:intron | 45.0% | |
| TTAATGCAGCATGTCCTCAG+AGG | - | chr3.2:60196662-60196681 | MS.gene061566:CDS | 45.0% | |
| ! | TCTCCAGGCTTACCCATTTT+TGG | + | chr3.2:60198676-60198695 | None:intergenic | 45.0% |
| !! | AAACCAAGAGAGAGCACCAA+TGG | - | chr3.2:60197979-60197998 | MS.gene061566:intron | 45.0% |
| !! | AACCAAGAGAGAGCACCAAT+GGG | - | chr3.2:60197980-60197999 | MS.gene061566:intron | 45.0% |
| !! | AGAAAGCTGTGGTGGATCAA+TGG | - | chr3.2:60198584-60198603 | MS.gene061566:intron | 45.0% |
| !! | GAATTTCTAGTAGGCCAGCT+TGG | - | chr3.2:60198902-60198921 | MS.gene061566:CDS | 45.0% |
| !! | GGTGGGAGAGAATTTCTAGT+AGG | - | chr3.2:60198893-60198912 | MS.gene061566:CDS | 45.0% |
| !! | GTATCGATTAGGTACGGGTT+TGG | + | chr3.2:60198028-60198047 | None:intergenic | 45.0% |
| !! | AAAAATATTATTGAATAAAA+AGG | + | chr3.2:60196840-60196859 | None:intergenic | 5.0% |
| !!! | ATAAAAAATTACAAAAATTT+TGG | + | chr3.2:60197289-60197308 | None:intergenic | 5.0% |
| !!! | TAAAAAATTACAAAAATTTT+GGG | + | chr3.2:60197288-60197307 | None:intergenic | 5.0% |
| GCCAGCTTGGAAGAAGTTGA+AGG | - | chr3.2:60198915-60198934 | MS.gene061566:CDS | 50.0% | |
| ! | TACGGGTTTGGTATCCCATG+TGG | + | chr3.2:60198016-60198035 | None:intergenic | 50.0% |
| !! | ACCAAGAGAGAGCACCAATG+GGG | - | chr3.2:60197981-60198000 | MS.gene061566:intron | 50.0% |
| ACCTGAGTTCCTTCTCCTCC+AGG | - | chr3.2:60196762-60196781 | MS.gene061566:CDS | 55.0% | |
| ACCTGGAGGAGAAGGAACTC+AGG | + | chr3.2:60196766-60196785 | None:intergenic | 55.0% | |
| AGCATGTCCTCAGAGGGTGA+TGG | - | chr3.2:60196669-60196688 | MS.gene061566:CDS | 55.0% | |
| GCAGCAAAGTATGCAGACCG+TGG | - | chr3.2:60198532-60198551 | MS.gene061566:intron | 55.0% | |
| GCATCCAAAGGGCGGTTTCA+AGG | - | chr3.2:60197246-60197265 | MS.gene061566:intron | 55.0% | |
| TGCCAAGTAGGTCAGGACCA+CGG | + | chr3.2:60198552-60198571 | None:intergenic | 55.0% | |
| ! | TCCCCATTGGTGCTCTCTCT+TGG | + | chr3.2:60197985-60198004 | None:intergenic | 55.0% |
| !!! | ATTTTGGGGCAGAGGCTCAC+CGG | + | chr3.2:60197273-60197292 | None:intergenic | 55.0% |
| AGGCAAGCCATCACCCTCTG+AGG | + | chr3.2:60196679-60196698 | None:intergenic | 60.0% | |
| ATGGGGACGACATGGCCACA+TGG | - | chr3.2:60197998-60198017 | MS.gene061566:intron | 60.0% | |
| CAAAGGGCGGTTTCAAGGCC+CGG | - | chr3.2:60197251-60197270 | MS.gene061566:intron | 60.0% | |
| GACCGTGGTCCTGACCTACT+TGG | - | chr3.2:60198547-60198566 | MS.gene061566:intron | 60.0% | |
| GAGCACCAATGGGGACGACA+TGG | - | chr3.2:60197990-60198009 | MS.gene061566:intron | 60.0% | |
| TGGGGACGACATGGCCACAT+GGG | - | chr3.2:60197999-60198018 | MS.gene061566:intron | 60.0% | |
| TGTGGCCATGTCGTCCCCAT+TGG | + | chr3.2:60197998-60198017 | None:intergenic | 60.0% | |
| !!! | TTTTGGGGCAGAGGCTCACC+GGG | + | chr3.2:60197272-60197291 | None:intergenic | 60.0% |
| CGGGCCTTGAAACCGCCCTT+TGG | + | chr3.2:60197253-60197272 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60196637 | 60198948 | 60196637 | ID=MS.gene061566 |
| chr3.2 | mRNA | 60196637 | 60198948 | 60196637 | ID=MS.gene061566.t1;Parent=MS.gene061566 |
| chr3.2 | exon | 60198802 | 60198948 | 60198802 | ID=MS.gene061566.t1.exon1;Parent=MS.gene061566.t1 |
| chr3.2 | CDS | 60198802 | 60198948 | 60198802 | ID=cds.MS.gene061566.t1;Parent=MS.gene061566.t1 |
| chr3.2 | exon | 60197772 | 60197820 | 60197772 | ID=MS.gene061566.t1.exon2;Parent=MS.gene061566.t1 |
| chr3.2 | CDS | 60197772 | 60197820 | 60197772 | ID=cds.MS.gene061566.t1;Parent=MS.gene061566.t1 |
| chr3.2 | exon | 60196637 | 60197079 | 60196637 | ID=MS.gene061566.t1.exon3;Parent=MS.gene061566.t1 |
| chr3.2 | CDS | 60196637 | 60197079 | 60196637 | ID=cds.MS.gene061566.t1;Parent=MS.gene061566.t1 |
| Gene Sequence |
| Protein sequence |
