AlfalfaGEDB | MS.gene52370

M. sativa cultivar XinJiangDaYe / MS.gene52370

KEGG: K24193
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52370.t1	XP_013460889.1	97.9	512	9	1	1	510	1	512	1.70E-278	968

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52370.t1	Q93Y91	60.1	504	196	3	1	501	1	502	1.4e-172	607.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52370.t1	Q84N02	97.9	512	9	1	1	510	1	512	1.2e-278	968.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene52370	-0.807363	5.24E-50	-1.69E-46
MS.gene049171	MS.gene52370	-0.814819	1.27E-51	-1.69E-46
MS.gene049222	MS.gene52370	-0.818137	2.29E-52	-1.69E-46
MS.gene049320	MS.gene52370	-0.823899	1.08E-53	-1.69E-46
MS.gene049549	MS.gene52370	0.869728	2.49E-66	-1.69E-46
MS.gene049609	MS.gene52370	-0.811952	5.41E-51	-1.69E-46
MS.gene049611	MS.gene52370	0.80256	5.29E-49	-1.69E-46
MS.gene049633	MS.gene52370	-0.803652	3.15E-49	-1.69E-46
MS.gene049634	MS.gene52370	0.817043	4.05E-52	-1.69E-46
MS.gene049805	MS.gene52370	-0.808244	3.41E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006547	MS.gene52370	PPI
MS.gene018060	MS.gene52370	PPI
MS.gene020412	MS.gene52370	PPI
MS.gene021157	MS.gene52370	PPI
MS.gene04674	MS.gene52370	PPI
MS.gene052174	MS.gene52370	PPI
MS.gene055771	MS.gene52370	PPI
MS.gene055946	MS.gene52370	PPI
MS.gene058372	MS.gene52370	PPI
MS.gene062929	MS.gene52370	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene52370.t1	MTR_3g074390	97.852	512	9	1	1	510	1	512	999
MS.gene52370.t1	MTR_3g074410	78.235	510	110	1	1	510	1	509	821
MS.gene52370.t1	MTR_3g074270	64.940	502	152	3	1	502	1	478	679
MS.gene52370.t1	MTR_3g074380	88.251	366	43	0	1	366	1	366	657
MS.gene52370.t1	MTR_3g074340	78.947	323	68	0	188	510	18	340	539
MS.gene52370.t1	MTR_3g008160	52.941	493	224	6	12	500	9	497	539
MS.gene52370.t1	MTR_3g074320	78.638	323	69	0	188	510	18	340	538
MS.gene52370.t1	MTR_3g074370	78.638	323	69	0	188	510	18	340	536
MS.gene52370.t1	MTR_0204s0020	51.129	487	233	4	13	498	8	490	526
MS.gene52370.t1	MTR_3g008170	53.196	485	220	5	20	500	17	498	520

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52370.t1	AT1G34580	60.119	504	196	3	1	501	1	502	0.0	630
MS.gene52370.t1	AT1G34580	60.619	452	175	2	53	501	1	452	0.0	575
MS.gene52370.t1	AT1G11260	54.490	490	215	6	20	505	17	502	0.0	538
MS.gene52370.t1	AT3G19930	52.277	505	234	5	1	503	1	500	0.0	522
MS.gene52370.t1	AT3G19930	52.277	505	234	5	1	503	1	500	0.0	522
MS.gene52370.t1	AT5G26340	49.503	503	246	6	10	507	7	506	0.0	521
MS.gene52370.t1	AT3G19940	52.599	481	224	4	22	500	21	499	0.0	519
MS.gene52370.t1	AT4G21480	53.086	486	224	4	20	503	17	500	7.40e-180	514
MS.gene52370.t1	AT4G02050	48.824	510	255	5	1	508	1	506	2.58e-179	514
MS.gene52370.t1	AT4G02050	48.824	510	255	5	1	508	1	506	2.58e-179	514

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Find 130 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGTTTGAAAATGGC+TGG	0.520634	3.1:+60941057	None:intergenic
AAAGAGGTTAGGTGAATAAA+AGG	0.293694	3.1:-60944505	None:intergenic
AAAGGAATTCCTTTGGTCTC+AGG	0.421329	3.1:-60945225	None:intergenic
AAATATTCCCATGCTCATTT+TGG	0.112731	3.1:+60941581	MS.gene52370:CDS
AACACGACCCAAAATGAGCA+TGG	0.574342	3.1:-60941589	None:intergenic
AACAGCTATACTTTGTCCTG+TGG	0.598060	3.1:-60945070	None:intergenic
AACCGATACGCCGAATGGCT+TGG	0.471128	3.1:+60944257	MS.gene52370:CDS
AACGGATCCAAGTATAATGG+CGG	0.663801	3.1:-60944565	None:intergenic
AAGATTCTTGTTCATATCTG+GGG	0.569807	3.1:+60944638	MS.gene52370:CDS
AAGGGAATATCGACCTCACT+TGG	0.537820	3.1:+60944428	MS.gene52370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGGTTAGGTGAATAAA+AGG	-	chr3.1:60944508-60944527	None:intergenic	30.0%
AAGATTCTTGTTCATATCTG+GGG	+	chr3.1:60944638-60944657	MS.gene52370:CDS	30.0%
AAGGTTAGACAAAAGACTAA+CGG	-	chr3.1:60944586-60944605	None:intergenic	30.0%
AATCTACATCCTCTTGAAAT+CGG	+	chr3.1:60942077-60942096	MS.gene52370:intron	30.0%
AGAGTCAATGTACACTATAT+GGG	+	chr3.1:60945248-60945267	MS.gene52370:CDS	30.0%
ATAAGTCAGAAGAAAGTGAA+AGG	-	chr3.1:60942401-60942420	None:intergenic	30.0%
ATGGGATACTATAATACAAC+GGG	-	chr3.1:60942574-60942593	None:intergenic	30.0%
CACACAATACATATTCACTT+CGG	-	chr3.1:60941397-60941416	None:intergenic	30.0%
CTGTAAGTTGTTGGAAAAAT+GGG	-	chr3.1:60944470-60944489	None:intergenic	30.0%
CTTCTTTATGGATATGATCT+CGG	+	chr3.1:60941183-60941202	MS.gene52370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	60941072	60945332	60941072	ID=MS.gene52370
chr3.1	mRNA	60941072	60945332	60941072	ID=MS.gene52370.t1;Parent=MS.gene52370
chr3.1	exon	60941072	60941213	60941072	ID=MS.gene52370.t1.exon1;Parent=MS.gene52370.t1
chr3.1	CDS	60941072	60941213	60941072	ID=cds.MS.gene52370.t1;Parent=MS.gene52370.t1
chr3.1	exon	60941325	60941644	60941325	ID=MS.gene52370.t1.exon2;Parent=MS.gene52370.t1
chr3.1	CDS	60941325	60941644	60941325	ID=cds.MS.gene52370.t1;Parent=MS.gene52370.t1
chr3.1	exon	60944054	60944683	60944054	ID=MS.gene52370.t1.exon3;Parent=MS.gene52370.t1
chr3.1	CDS	60944054	60944683	60944054	ID=cds.MS.gene52370.t1;Parent=MS.gene52370.t1
chr3.1	exon	60944892	60945332	60944892	ID=MS.gene52370.t1.exon4;Parent=MS.gene52370.t1
chr3.1	CDS	60944892	60945332	60944892	ID=cds.MS.gene52370.t1;Parent=MS.gene52370.t1

Gene Sequence

>MS.gene52370

ATGGCTGGTGGGGTTTTACCAGTGGATAGTACACCGGTAACTGCCATCAATATTGGTGGCAAGTTAACACTCTCAATCATCATTACCTGCATAGTTGCCGCATCCGGTGGCCTTCTTTATGGATATGATCTCGGAGTTTCAGGTTTTTTTTTCTTCTGCTTTTATTCCATAAATTTTCCAGTCTATCTATCAAGTTTAAAAGATTATTTATCTAATTTCACATTTTTTTCCTTTTCACTTTATTAAATTTCAGGAGGTGTTACAACGATGGTGCCATTTCTCGAAAAATTCTTTCCAGACATTCTGAGAAAGGCAGCCAGTGCCGAAGTGAATATGTATTGTGTGTATGACAGTCAAATATTGACATTATTTACGTCTTCTCTTTATCTAGCTGGATTAGTGTCATCCATTGCAGCTAGCAAAGTCACAGCAGCTTATGGTCGGAGAAACGTCATCATAATAGGCGGTGCTCTCTTCATTGCCGGTGGCGCCATTAATGGTGGTTCGGAAAATATTCCCATGCTCATTTTGGGTCGTGTTCTTCTTGGGTTTGGGGTTGGTTTCACTAATCAAGTAAGTCTGCATGTAAAACATTATTTTATTTTATTCTAAACTTCAATTTGTTTTTTGTTTTGGTAGACTTATACACTTTTTCTGTTGATAAAAAGTATAGTTCAAAACTTAAATAATTGAGTTTGATATTCACCGCTAAAAATGAGTTTGATGGTCAATTTTATGATGTACAAGTGAGATAGATTTTTACACCATACACAAGTTTGTTTCCGTCATCAGATAACTAAGTCTCAGTGTTAGATTAATTGAAGTATGATTTTGACATTTTTTTTTAAACAGCAGTATGATATGGCATGTTCATTCAAAGGTGAACAAGAAACTTGGGTGCATATGCATGATGCAATACTGATTTACTTGTGCACGATAATATACTTCATTCTTTCACATTGGATTGGTCTAATTTTCCACTAAATCACACAATTTCATTCGTCTAATCTACATCCTCTTGAAATCGGTTCATCTAATTCATAAAAAAAAAAAAAATTGACTTGTAATAATTATCAGAAGATCACATCCAATCATTTAGAGGAAACTTTTTTTATAAATAAAATTAATTGTTAAGGAGTATAAGGAGTCTCGTAAAAAAATAAAGTTACAATGGGAAAAGAGATTTAATTACCATCGCTTGTATGCTATATAGTGGGAAAGAAAAGACAGCGAAAGTATGAAGAATATGTAATTCGTTACAATTGCTCTTTTTTTTTTTTTTTCTTTCTTGATCATGACTTCTCTGCTTGTTTTAGTTTTTATCTCCCTTTCACTTTCTTCTGACTTATGCACCCCATGAATTATGAAAAAACAATCATTATCAACATAGTGTACAATACATGGACTAATTAAATTACTCACTAAATAAAAAAAGTCAAAATAAGAGAAATAAAGGCCAACATGTTCCCGTAGTATATATTATGGCTTAAAAAAATGTTCCCGTTGTATTATAGTATCCCATTAGATCCTTTGAAAAGGTCAATATTAAAAATTAGTTTTAAATTGATTTTTCCCATTTGTACAAAATACTGGACCTCTAACTCCTTTAACTCTCCCTCAAAAAAAAAAAAAAAAACTCCTTTAACTCAGCACAAAATCTAGACATTTTTATTTTTAAGACTTTATAACTAGCTCGTGACTCTGTTTTTGCTCGTTTCTAGGCACATCTTATGCATGATTGAGATTTTTATTCATTAATATATTGTTTTTTGCTTCTTAAAAAAACAAAAATTCTTTTAACTCCTCACTAACACCGGTTGATCTATTCAACCTCCCTTGAAAGAAATAACACATATTTTTCTCTAAAGATACTTCTAGCATGTATTAGATGAATTCTCATACGTCCTCGTGAACCTAGCTCAGTTGACATGGACAATGCATAATATATGTAGGGTACGGAGTTCAAACCCCGGCCACCACAAAAAAAAGATGAATTCCCATACATAATGAATTCCCATACATATTATATTGATGTCTTGCAAATTTTTAATTGCATTATAATGAATTCCCATACATATTGATGTCTTGCAAATTTTTAATTGCATTAATTATTTCTTTATCAACGTACTCATATCTATATATATCACGTCTTTTTTTTTCCTGCAATTTATAATAAATATTAATGATAAAAACATAAACTATAGTTCTTTCTCATGGACAATGAACTTGTAAAATGATTTCTATTATTGACATATTTAGTAATTCTAACATCTTTATTATGGTTGTCAAACTCGCGAGTACACGTGTACGAGTTTAAGAGGCAAAAACAAGTAGAATCCTTCATAAAATTGATTTTTTTTTCATTCTACTATTATGATAAGGCGATATTTAAATTATTAACATATTTAGTAATTCTAACATCTTTATTATGGTTGTCAAACTCACGAGTACATGTGTACGAGTTTAAGAGGCAAAAACAAGTAGAATCCTGCATAAAATTGTTTTTTTTTTTAAATTCTACTATTATGATAAGGCGATATTTAAGAAGGAACTAGAATTTTATCTACATATGTGTGTGTGTGTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTGTGTGTGCGCGCGTGCGTGCGTAGTTTAAGAGTCAAATCTATAAACCATTTATAAGTCTGTGTAGATTCGTGGGTCTGACAAGCTTGATTTTTATTAATTCTTATGTTTTGATCAACAGAATCCTAAATACATACTACTAAAAAAAATAGCGAGGGATTTTTAGAAATGGAAAACGTGAAATATCTCTCTAATACTGTCGATAAATTTTGTGACGAAGAAATTATTGAGGAATTTCATTTTTTTTGTTCAATAATTTCGTCACTAATTTTCCGTTATTATCAATCATCATCCTTATTATATTATGACATTTTACAATTGGAAAAGGCTGCACCGTTGTACCTATCTGAAACTGCTCCACCAAAATGGCGAGGCACTTTCAACACAGGCTTTCAATTCTTCTTGGGAATTGGTGTGGTTGCCGCTGGCTGCATAAACTACGCCACGGCCAAGCACACATGGGGATGGAGACTCTCTCTTGGACTTGCAGTGGTTCCTGCAGTTGTGATGACAATCGGTTCCTTCCTCATAACCGATACGCCGAATGGCTTGGTAGAACGTGGTAAGATAGAGCAAGCCAAAGAAGCTTTACGCAAAATTAGAGGATTCTCCGTTGATATTGAACCTGAGTTAGAAGAACTTATTAAGTGGACAGAAATTGCAAAATCAGTGCAACAAGAGCCCTTCAAAACCATTTTAAAAAGGGAATATCGACCTCACTTGGTGATGGCATTCGCAATCCCATTTTTCCAACAACTTACAGGGATCAACATAGTAGCCTTTTATTCACCTAACCTCTTTCATTCTGTGGGTTTTGGACGCGACGGCGCTTTACTTTCCGCCATTATACTTGGATCCGTTAGTCTTTTGTCTAACCTTATCTCTGCTGGTATTGTGGATCGAATTGGTCGAAGATTCTTGTTCATATCTGGGGGAATTATGATGCTTGTCTGCTTGGTAAGCGAACTAAACTTATCTATCTTTTTGTTAATTAATATATTTTTGTCCTATGAAGGATATTTAGTTTAACATTATTGCATCATTTTATTCATGTAGCCGACTCACTTAGTGGGATAAGGCTTGATTATTGTTTTTAAGCTATTTAACATTTTTTATTTACTTCCACTTGTTACTAATTAAAATAGTTTGTGTGAACAATGTGAAGATTGCTGTGTCCATTGTGCTGGCAGTGGTGACTGGTGTTGATGGTACAAAAGATATATCCAAGGGCAATGCAATAGTTGTATTGGTGCTATTGTGTTTGTACACTGCTGGTTTTGGTTGGTCGTGGGGCCCTCTAACATGGCTTATTCCAAGTGAGATTTTCCCAGTAAAAATAAGAACCACAGGACAAAGTATAGCTGTTGCAGTGCAATTCATAATAATCTTTGTGTTATCGCAAACATTCTTGACAATGTTATGCCACATGAAGTTCGGGGCCTTTGTCTTCTATGCTTTTTGGGTTATTGTGATGACTCTATTTGTTATCTTCTTCTTGCCTGAGACCAAAGGAATTCCTTTAGAGTCAATGTACACTATATGGGGCAGACACTGGTTTTGGTCTCGGTATGTTAAAGGACAAGATGGCCTAGAAAATCTTCCATGA

Protein sequence

>MS.gene52370.t1

MAGGVLPVDSTPVTAINIGGKLTLSIIITCIVAASGGLLYGYDLGVSGGVTTMVPFLEKFFPDILRKAASAEVNMYCVYDSQILTLFTSSLYLAGLVSSIAASKVTAAYGRRNVIIIGGALFIAGGAINGGSENIPMLILGRVLLGFGVGFTNQAAPLYLSETAPPKWRGTFNTGFQFFLGIGVVAAGCINYATAKHTWGWRLSLGLAVVPAVVMTIGSFLITDTPNGLVERGKIEQAKEALRKIRGFSVDIEPELEELIKWTEIAKSVQQEPFKTILKREYRPHLVMAFAIPFFQQLTGINIVAFYSPNLFHSVGFGRDGALLSAIILGSVSLLSNLISAGIVDRIGRRFLFISGGIMMLVCLIAVSIVLAVVTGVDGTKDISKGNAIVVLVLLCLYTAGFGWSWGPLTWLIPSEIFPVKIRTTGQSIAVAVQFIIIFVLSQTFLTMLCHMKFGAFVFYAFWVIVMTLFVIFFLPETKGIPLESMYTIWGRHWFWSRYVKGQDGLENLP