AlfalfaGEDB | MS.gene88587

M. sativa cultivar XinJiangDaYe / MS.gene88587

KEGG: K24193
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88587.t1	XP_003589734.2	97.1	512	15	0	1	512	1	512	1.20E-284	988.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88587.t1	Q9LT15	71.0	510	144	3	1	507	1	509	1.6e-208	726.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88587.t1	G7IBF1	97.1	512	15	0	1	512	1	512	8.9e-285	988.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002806	MS.gene88587	PPI
MS.gene004491	MS.gene88587	PPI
MS.gene006547	MS.gene88587	PPI
MS.gene011944	MS.gene88587	PPI
MS.gene014297	MS.gene88587	PPI
MS.gene017222	MS.gene88587	PPI
MS.gene018060	MS.gene88587	PPI
MS.gene021157	MS.gene88587	PPI
MS.gene026189	MS.gene88587	PPI
MS.gene026190	MS.gene88587	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene88587.t1	MTR_1g038630	97.070	512	15	0	1	512	1	512	1019
MS.gene88587.t1	MTR_1g038600	93.945	512	13	1	1	512	1	494	974
MS.gene88587.t1	MTR_5g082540	78.501	507	109	0	1	507	1	507	815
MS.gene88587.t1	MTR_4g091370	64.706	493	168	4	13	500	13	504	615
MS.gene88587.t1	MTR_3g008160	58.943	492	196	4	13	501	13	501	605
MS.gene88587.t1	MTR_0009s0370	59.000	500	200	3	1	497	1	498	600
MS.gene88587.t1	MTR_5g041550	61.924	499	186	3	3	497	2	500	597
MS.gene88587.t1	MTR_3g093010	59.216	510	202	3	3	506	2	511	594
MS.gene88587.t1	MTR_4g090600	62.272	493	181	4	11	500	11	501	587
MS.gene88587.t1	MTR_5g006070	55.689	501	212	4	14	511	13	506	585

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene88587.t1	AT3G19940	71.748	492	137	2	19	509	21	511	741
MS.gene88587.t1	AT1G50310	69.980	493	145	3	19	509	21	512	718
MS.gene88587.t1	AT5G23270	67.134	499	161	2	1	496	1	499	684
MS.gene88587.t1	AT3G19930	65.415	506	170	3	3	505	2	505	676
MS.gene88587.t1	AT3G19930	65.415	506	170	3	3	505	2	505	676
MS.gene88587.t1	AT1G11260	61.554	502	189	3	1	499	1	501	639
MS.gene88587.t1	AT4G21480	63.190	489	178	2	10	497	10	497	615
MS.gene88587.t1	AT5G26340	57.058	503	212	3	1	500	1	502	603
MS.gene88587.t1	AT4G02050	54.264	516	227	5	1	511	1	512	573
MS.gene88587.t1	AT4G02050	54.264	516	227	5	1	511	1	512	573

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Find 100 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGATAACATTAATGC+CGG	0.548089	1.4:-23357158	None:intergenic
AAACATGTCATTAACACATA+TGG	0.418399	1.4:-23356211	None:intergenic
AAACTGACGAAAGTGAGTTG+AGG	0.669570	1.4:-23357112	None:intergenic
AAACTTCAAGTGACAAAGCA+TGG	0.588507	1.4:-23357726	None:intergenic
AAATGGATGGAGAGTCTCTT+TGG	0.295162	1.4:+23356862	MS.gene88587:CDS
AACGTTGAAATGCTAATAAT+TGG	0.313941	1.4:+23356547	MS.gene88587:CDS
AAGAAGGTTATTATTTCTTG+AGG	0.518335	1.4:+23357306	MS.gene88587:CDS
AAGCAAAGGCAATGTTGAAA+AGG	0.468116	1.4:+23356978	MS.gene88587:CDS
AAGGCCTCGATGTTTCTTGG+TGG	0.522913	1.4:+23356481	MS.gene88587:CDS
AATAAAGAACAAGAGAAGGT+CGG	0.627160	1.4:-23357549	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAGAACAAGAGAAGGT+CGG	-	chr1.4:23357552-23357571	None:intergenic	30.0%
ACATTACTCAACCAGAATAT+AGG	+	chr1.4:23357089-23357108	MS.gene88587:CDS	30.0%
ACTCTATTCATCTCTTCAAT+TGG	-	chr1.4:23357833-23357852	None:intergenic	30.0%
ATCTTAATTGCATCAAGGTT+TGG	+	chr1.4:23357491-23357510	MS.gene88587:CDS	30.0%
CAAAGCCTAAGATCTTAAAA+AGG	-	chr1.4:23357195-23357214	None:intergenic	30.0%
CACAAATAAAGAACAAGAGA+AGG	-	chr1.4:23357556-23357575	None:intergenic	30.0%
CATTTAGTATTGCACCAATA+AGG	-	chr1.4:23356516-23356535	None:intergenic	30.0%
CCAAATTCTTTGATTGAAAG+AGG	+	chr1.4:23356944-23356963	MS.gene88587:CDS	30.0%
CCTCTTTCAATCAAAGAATT+TGG	-	chr1.4:23356947-23356966	None:intergenic	30.0%
CTCACAAATGTTTATTTGTC+AGG	+	chr1.4:23357333-23357352	MS.gene88587:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	23356151	23357934	23356151	ID=MS.gene88587
chr1.4	mRNA	23356151	23357934	23356151	ID=MS.gene88587.t1;Parent=MS.gene88587
chr1.4	exon	23356151	23356609	23356151	ID=MS.gene88587.t1.exon1;Parent=MS.gene88587.t1
chr1.4	CDS	23356151	23356609	23356151	ID=cds.MS.gene88587.t1;Parent=MS.gene88587.t1
chr1.4	exon	23356731	23357354	23356731	ID=MS.gene88587.t1.exon2;Parent=MS.gene88587.t1
chr1.4	CDS	23356731	23357354	23356731	ID=cds.MS.gene88587.t1;Parent=MS.gene88587.t1
chr1.4	exon	23357479	23357934	23357479	ID=MS.gene88587.t1.exon3;Parent=MS.gene88587.t1
chr1.4	CDS	23357479	23357934	23357479	ID=cds.MS.gene88587.t1;Parent=MS.gene88587.t1

Gene Sequence

>MS.gene88587

ATGGGAGCTGGAGCTTTCGTTGAGACGAGTGGAATAAAAAATTATGAGGGAAGAGTGACTCCATATGTGTTAATGACATGTTTTGTAGCTGCCATGGGAGGTCTTCTTTTTGGTTATGATCTTGGTATTACTGGAGGAGTGACTTCTATGGATGAATTCTTGATCAAATTCTTTCCTCGGGTGTATAAAAGAATGAAAGATGAAACACATAATACAAGTCAATATTGTAAATTTGATGATCAAATTTTAACACTATTCACATCTTCCCTATACCTTGCTGCATTGATAGCTTCCTTCTTTGCTTCCACAATCACAAGAATGATGGGACGCAAGGCCTCGATGTTTCTTGGTGGCTTATTTTTCCTTATTGGTGCAATACTAAATGGATTAGCAGCTAACGTTGAAATGCTAATAATTGGTCGTCTACTTCTAGGATTTGGTGTGGGATTTTGCAATCAGGTAAGAATCATCTCTAATTTTTTATAAGTTGTATATATTTAATAAAATTACTTAATATTGTGAAAAACAAAATAATATATAATTAACTAATTTTTGTCTTTGTTATCTATTGTCTAAACAGTCGGTACCCGTCTATTTGTCTGAAATGGCTCCTGCAAAAATTAGAGGAGCACTTAATATTGGCTTCCAAATGATGATTACAATTGGTATTCTAGCTGCAAATTTGATCAATTATGGTACTTCCAAGCACAAAAATGGATGGAGAGTCTCTTTGGGTCTTGGAGCAGTGCCAGCAATTCTTTTGTGCCTAGGATCCCTTTTTTTAGGTGAAACACCAAATTCTTTGATTGAAAGAGGCAACCATGAAAAAGCAAAGGCAATGTTGAAAAGGATCCGCGGAACCGAAAATGTTGATGAAGAATATCAAGATCTTGTTGATGCTAGTGAAGAAGCTAGTAAGGTGGAACATCCATGGAAGAACATTACTCAACCAGAATATAGGCCTCAACTCACTTTCGTCAGTTTCATTCCATTTTTCCAACAACTTACCGGCATTAATGTTATCATGTTTTACGCTCCCGTCCTTTTTAAGATCTTAGGCTTTGGTGATGATGCTTCCCTCATGTCTGCGGTTATTAGTGGTGGCGTCAATGTTGTTGCTACACTTGTTTCTGTCTTCACAGTAGACAAATTTGGAAGAAGGTTATTATTTCTTGAGGGTGGCTCACAAATGTTTATTTGTCAGGTAAAAATTGACACATTTATTTCTTTTAGATTTTCATACATAACGCTCAAGTTAAACCTATATGTGTGTCCTCGTTTGTATGGAACTGTTCATGTACAGACTATAATTAATCTATGATTTGTAGGTTATTATTGGAATCTTAATTGCATCAAGGTTTGGATTGACCGGACAAGGATCATTTACCAAAGGTGAAGCCGACCTTCTCTTGTTCTTTATTTGTGCATATGTTGCGGCATTTGCATGGTCTTGGGGACCATTGGGTTGGTTGGTGCCTAGTGAAATATGCGCTCTAGAGGTTCGACCAGCAGGTCAAGCTATAAATGTTGCGGTGAACATGTTCTTCACATTTATGATTGCTCAAGTCTTCCTAACCATGCTTTGTCACTTGAAGTTTGGACTTTTCTTTTTCTTTGCTGGTTTTGTGGCCATCATGACCATTTTCATTGCTGTGCTCTTACCCGAGACCAAAAACGTCCCAATTGAAGAGATGAATAGAGTGTGGAAGTCACATTGGTTTTGGACAAAGTATGTTCCTGATCATGTTGTTGATGGTGGTAACAACAAAAAGGTTGATCCTTGA

Protein sequence

>MS.gene88587.t1

MGAGAFVETSGIKNYEGRVTPYVLMTCFVAAMGGLLFGYDLGITGGVTSMDEFLIKFFPRVYKRMKDETHNTSQYCKFDDQILTLFTSSLYLAALIASFFASTITRMMGRKASMFLGGLFFLIGAILNGLAANVEMLIIGRLLLGFGVGFCNQSVPVYLSEMAPAKIRGALNIGFQMMITIGILAANLINYGTSKHKNGWRVSLGLGAVPAILLCLGSLFLGETPNSLIERGNHEKAKAMLKRIRGTENVDEEYQDLVDASEEASKVEHPWKNITQPEYRPQLTFVSFIPFFQQLTGINVIMFYAPVLFKILGFGDDASLMSAVISGGVNVVATLVSVFTVDKFGRRLLFLEGGSQMFICQVIIGILIASRFGLTGQGSFTKGEADLLLFFICAYVAAFAWSWGPLGWLVPSEICALEVRPAGQAINVAVNMFFTFMIAQVFLTMLCHLKFGLFFFFAGFVAIMTIFIAVLLPETKNVPIEEMNRVWKSHWFWTKYVPDHVVDGGNNKKVDP