AlfalfaGEDB | MS.gene80690

M. sativa cultivar XinJiangDaYe / MS.gene80690

KEGG: K24193
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80690.t1	XP_003616628.1	97.6	510	12	0	1	510	1	510	5.20E-283	983

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80690.t1	Q9LT15	70.8	497	143	2	2	497	4	499	4.5e-203	708.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80690.t1	G7KH04	97.6	510	12	0	1	510	1	510	3.7e-283	983.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002806	MS.gene80690	PPI
MS.gene003641	MS.gene80690	PPI
MS.gene003775	MS.gene80690	PPI
MS.gene004000	MS.gene80690	PPI
MS.gene004491	MS.gene80690	PPI
MS.gene006546	MS.gene80690	PPI
MS.gene006547	MS.gene80690	PPI
MS.gene009409	MS.gene80690	PPI
MS.gene00961	MS.gene80690	PPI
MS.gene011944	MS.gene80690	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene80690.t1	MTR_5g082540	97.647	510	12	0	1	510	1	510	1018
MS.gene80690.t1	MTR_1g038630	78.557	499	107	0	1	499	1	499	808
MS.gene80690.t1	MTR_1g038600	75.752	499	103	1	1	499	1	481	763
MS.gene80690.t1	MTR_4g091370	64.919	496	170	3	13	505	13	507	625
MS.gene80690.t1	MTR_5g041550	61.961	510	191	2	1	507	1	510	620
MS.gene80690.t1	MTR_3g008160	59.443	503	196	5	10	509	10	507	615
MS.gene80690.t1	MTR_3g093010	61.782	505	189	3	3	504	2	505	615
MS.gene80690.t1	MTR_5g006070	58.078	489	201	3	14	499	13	500	608
MS.gene80690.t1	MTR_0009s0370	57.884	501	208	2	4	501	2	502	594
MS.gene80690.t1	MTR_0204s0020	56.504	492	209	3	7	497	5	492	593

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene80690.t1	AT3G19940	71.667	480	134	2	19	497	21	499	726
MS.gene80690.t1	AT1G50310	70.186	483	141	3	19	499	21	502	710
MS.gene80690.t1	AT5G23270	68.000	500	158	1	2	499	3	502	700
MS.gene80690.t1	AT3G19930	65.810	506	168	3	3	505	2	505	677
MS.gene80690.t1	AT3G19930	65.810	506	168	3	3	505	2	505	677
MS.gene80690.t1	AT1G11260	61.690	509	189	4	1	506	1	506	639
MS.gene80690.t1	AT4G21480	65.789	494	165	3	6	497	6	497	634
MS.gene80690.t1	AT5G26340	57.396	507	211	4	1	504	1	505	616
MS.gene80690.t1	AT4G02050	55.090	501	217	4	7	503	11	507	580
MS.gene80690.t1	AT4G02050	55.090	501	217	4	7	503	11	507	580

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Find 105 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAGCAATAGCCTTC+TGG	0.375978	5.4:+65020000	None:intergenic
AAACATGTGACAAACACAAA+TGG	0.506888	5.4:+65021657	None:intergenic
AAACTTCAAGTGACAAAGCA+TGG	0.588507	5.4:+65020184	None:intergenic
AAACTTGGAGTTAGCGGTGA+AGG	0.544297	5.4:-65020404	MS.gene80690:CDS
AAACTTGTCCACGGTATAGA+TGG	0.430769	5.4:+65020603	None:intergenic
AACAAATGGAAGGCAATATG+AGG	0.438666	5.4:-65021691	MS.gene80690:CDS
AAGATCTCAATGTTTGCAGG+TGG	0.629332	5.4:-65021387	MS.gene80690:CDS
AATGGATGGAGAATTTCTTT+GGG	0.438071	5.4:-65021021	MS.gene80690:CDS
AATGGTTTGGCTGTCAATGT+TGG	0.530802	5.4:-65021336	MS.gene80690:CDS
AATGTTGGAATGCTTATCGT+TGG	0.609195	5.4:-65021321	MS.gene80690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTGACAAACACAAA+TGG	+	chr5.4:65020067-65020086	None:intergenic	30.0%
AATGGATGGAGAATTTCTTT+GGG	-	chr5.4:65020700-65020719	MS.gene80690:CDS	30.0%
AGCATGATTGCTATAAAACT+TGG	-	chr5.4:65021302-65021321	MS.gene80690:CDS	30.0%
ATTTGTGTTTGTCACATGTT+TGG	-	chr5.4:65020066-65020085	MS.gene80690:CDS	30.0%
GGGAAGAATTTAACCAAAAA+TGG	+	chr5.4:65020160-65020179	None:intergenic	30.0%
TAGTTTCTTCAACAAATGGA+AGG	-	chr5.4:65020020-65020039	MS.gene80690:CDS	30.0%
TATCCAAATGTTTATTTGCC+AGG	-	chr5.4:65021170-65021189	MS.gene80690:intron	30.0%
TTCTCAATGATGTGTACAAT+TGG	-	chr5.4:65020631-65020650	MS.gene80690:CDS	30.0%
TTGAAGAAATGAGTAAAGTG+TGG	-	chr5.4:65021645-65021664	MS.gene80690:CDS	30.0%
TTTAACCAAAAATGGTTCCA+TGG	+	chr5.4:65020152-65020171	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	65020004	65021739	65020004	ID=MS.gene80690
chr5.4	mRNA	65020004	65021739	65020004	ID=MS.gene80690.t1;Parent=MS.gene80690
chr5.4	exon	65021281	65021739	65021281	ID=MS.gene80690.t1.exon1;Parent=MS.gene80690.t1
chr5.4	CDS	65021281	65021739	65021281	ID=cds.MS.gene80690.t1;Parent=MS.gene80690.t1
chr5.4	exon	65020552	65021175	65020552	ID=MS.gene80690.t1.exon2;Parent=MS.gene80690.t1
chr5.4	CDS	65020552	65021175	65020552	ID=cds.MS.gene80690.t1;Parent=MS.gene80690.t1
chr5.4	exon	65020004	65020453	65020004	ID=MS.gene80690.t1.exon3;Parent=MS.gene80690.t1
chr5.4	CDS	65020004	65020453	65020004	ID=cds.MS.gene80690.t1;Parent=MS.gene80690.t1

Gene Sequence

>MS.gene80690

ATGGGTGCTGGAGTAATAGTTTCTTCAACAAATGGAAGGCAATATGAGGGGAAGGTCACACCATTTGTGTTTGTCACATGTTTGGTCGCAGCCATGGGAGGTCTTCTTTTTGGTTATGATCTTGGTATTACAGGAGGAGTGACTTCCATGGAACCATTTTTGGTTAAATTCTTCCCTAGTGTTTACAAGAAAATGAAAGATGAATCTAGGCATGATAGCAATTATTGCAAATTTGACAACCAACTCCTTACTTTGTTCACATCTTCCTTGTATATTGCGGCGTTAATAGCGTCTTTCTTTGCTTCCACTACTACAAGAGTGTTTGGACGCAAGATCTCAATGTTTGCAGGTGGCTTGTTTTTCCTTGTTGGTGCATTGCTGAATGGTTTGGCTGTCAATGTTGGAATGCTTATCGTTGGTCGCCTATTGCTTGGTTTTGGTGTAGGATATTGTAATCAGGTATAAATTGATCATTCTTGTTCTTTCATGTTTTGATGTATAAAAGGTTGAGAATATTGCAAGACCGATTGCATTTTAATTTTGTTTGTTGTTGTTCCTAAATAGTCTGTTCCAGTGTATTTGTCTGAAATGGCTCCGACAAAGATGAGAGGTGCGCTTAACATTGGATTCTCAATGATGTGTACAATTGGAATCCTAGTTGCAAATCTTATTAACTACGGGACTTCCAATCTTGAGAATGGATGGAGAATTTCTTTGGGCCTTGGAGCCGTTCCGGCAGTCATGTTGTGCATAGGATCTTTTTTCTTAGGTGACACACCAAACTCTTTGATCGAAAGAGGCCAAACAGAAGGAGCTAAGGCAATGTTGCAAAAGATTCGCGGCATTGATAATGTTGATGAGGAGTTTCAAGATCTAATTGATGCTAGCGAGGAAGCCAAAAAGGTGGAACACCCATGGAAAAATATTATACAAACAAGATACAGGCCTCAACTCACTTTTTGCTCTCTCATTCCGTTCTTCCAACAACTCACTGGAATCAATGTTATCATGTTTTATGCGCCTGTCCTTTTCAAAACTCTGGGCTTTGGAAATGATGCTTCTCTCATGTCTGCAGTAATTAGCGGAGGTGTCAACGTTGTTGCTACTTTAATTTCCATCTATACCGTGGACAAGTTTGGACGAAGAACTTTGTTCCTTGAAGGTGGTATCCAAATGTTTATTTGCCAGGTGAAAACTTCAATTAGCTATAATTAAACCTTAAAAATTATTACACATATTTCGTTTCCAAGCATAGATAATATAAATGATATAATCATTGATTGTAGGTTGCCGTTGGAAGCATGATTGCTATAAAACTTGGAGTTAGCGGTGAAGGCTCGTTTACAAAAACCGAAGCTGATCTTCTCTTAGTCTTTATATGTCTATATGTTGCGGCATTTGCATGGTCGTGGGGTGCGTTAGGATGGTTAGTTCCTAGTGAAATATGCTCTCTTGAAGTCCGATCTGCAGGTCAAGCTACCAATGTTGCAGTGAACATGTTGTTCACCTTTATCATTGCTCAAGTTTTTCTTACCATGCTTTGTCACTTGAAGTTTGGACTTTTCTTCTTCTTTGCTGGCTTTGTGCTGATCATGTCAATTTTCGTTGCCTTGTTTCTTCCTGAGACAAACAACGTTCCTATTGAAGAAATGAGTAAAGTGTGGAAGTCTCATTGGTTTTGGAAAAAGTTTGTTACTAATGTTGACACTGATCATGGCCAGAAGGCTATTGCTTGA

Protein sequence

>MS.gene80690.t1

MGAGVIVSSTNGRQYEGKVTPFVFVTCLVAAMGGLLFGYDLGITGGVTSMEPFLVKFFPSVYKKMKDESRHDSNYCKFDNQLLTLFTSSLYIAALIASFFASTTTRVFGRKISMFAGGLFFLVGALLNGLAVNVGMLIVGRLLLGFGVGYCNQSVPVYLSEMAPTKMRGALNIGFSMMCTIGILVANLINYGTSNLENGWRISLGLGAVPAVMLCIGSFFLGDTPNSLIERGQTEGAKAMLQKIRGIDNVDEEFQDLIDASEEAKKVEHPWKNIIQTRYRPQLTFCSLIPFFQQLTGINVIMFYAPVLFKTLGFGNDASLMSAVISGGVNVVATLISIYTVDKFGRRTLFLEGGIQMFICQVAVGSMIAIKLGVSGEGSFTKTEADLLLVFICLYVAAFAWSWGALGWLVPSEICSLEVRSAGQATNVAVNMLFTFIIAQVFLTMLCHLKFGLFFFFAGFVLIMSIFVALFLPETNNVPIEEMSKVWKSHWFWKKFVTNVDTDHGQKAIA