AlfalfaGEDB | MS.gene013833

M. sativa cultivar XinJiangDaYe / MS.gene013833

KEGG: K18592
GO: GO:0003674 GO:0003824 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009987 GO:0016787 GO:0034641 GO:0036374 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0051186 GO:0051187 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF01019.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013833.t1	AES72274.2	97.4	582	15	0	1	582	1	582	0.00E+00	1119.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013833.t1	Q680I5	64.4	568	196	4	17	581	13	577	1.9e-205	716.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013833.t1	G7J4F1	97.4	582	15	0	1	582	1	582	0.0e+00	1119.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008569	MS.gene013833	PPI
MS.gene013831	MS.gene013833	PPI
MS.gene013833	MS.gene070507	PPI
MS.gene013833	MS.gene057884	PPI
MS.gene013833	MS.gene057883	PPI
MS.gene013833	MS.gene016758	PPI
MS.gene013833	MS.gene013831	PPI
MS.gene013833	MS.gene070492	PPI
MS.gene013833	MS.gene070510	PPI
MS.gene013833	MS.gene38520	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013833.t1	MTR_3g087950	97.423	582	15	0	1	582	1	582	0.0	1167
MS.gene013833.t1	MTR_3g466000	75.045	561	139	1	22	582	18	577	0.0	854
MS.gene013833.t1	MTR_6g090280	52.028	567	259	4	28	582	58	623	0.0	551
MS.gene013833.t1	MTR_6g090280	50.840	476	222	3	118	582	1	475	1.44e-167	485
MS.gene013833.t1	MTR_6g090280	54.756	431	192	3	28	456	58	487	1.23e-151	446
MS.gene013833.t1	MTR_5g084180	86.792	106	14	0	11	116	17	122	1.45e-39	141

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013833.t1	AT4G39640	63.903	579	199	5	5	581	1	571	0.0	746
MS.gene013833.t1	AT4G39640	63.903	579	199	5	5	581	1	571	0.0	746
MS.gene013833.t1	AT4G39650	63.823	586	198	7	1	581	1	577	0.0	727
MS.gene013833.t1	AT4G29210	49.298	570	267	6	32	582	71	637	0.0	557
MS.gene013833.t1	AT4G29210	51.402	428	204	4	32	456	71	497	6.67e-156	457
MS.gene013833.t1	AT1G69820	71.556	225	63	1	286	509	1	225	1.99e-114	340

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Find 149 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTTCAGAAGGCTGG+AGG	0.604111	3.1:-70868511	MS.gene013833:CDS
AAAGCAGTAGTAGGTGCAAG+TGG	0.574642	3.1:-70867356	MS.gene013833:CDS
AAAGTACACTGTTAAACAAA+AGG	0.472586	3.1:-70868464	MS.gene013833:CDS
AACAAAGAGGAGGCATGCGA+TGG	0.603767	3.1:+70869742	None:intergenic
AACAACATGGAAAGCTTCCA+TGG	0.507183	3.1:-70868789	MS.gene013833:CDS
AACACTACTTTGAAGGCAAA+TGG	0.481370	3.1:-70868865	MS.gene013833:CDS
AAGATGTTCAGAAGGCTGGA+GGG	0.658153	3.1:-70868510	MS.gene013833:CDS
AATAGTACTCAACAATGAGA+TGG	0.573475	3.1:-70867605	MS.gene013833:CDS
ACAATACTTTCACCAAGTAC+AGG	0.566632	3.1:-70867628	MS.gene013833:CDS
ACATGCAGTGGATGCAGCTG+TGG	0.526599	3.1:-70869582	MS.gene013833:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTACTCAACAATGAGA+TGG	-	chr3.1:70868607-70868626	MS.gene013833:CDS	30.0%
AGTAAGAAAAGTCTAGTAGA+TGG	-	chr3.1:70867034-70867053	MS.gene013833:intron	30.0%
ATCTTGGAAACTATATGCAA+AGG	+	chr3.1:70866822-70866841	None:intergenic	30.0%
ATGGAATCTTACATTTGTTC+TGG	-	chr3.1:70868984-70869003	MS.gene013833:intron	30.0%
ATGTGGTATATTATGAGAAC+TGG	-	chr3.1:70869560-70869579	MS.gene013833:CDS	30.0%
ATTCAGAGCTATGTGAAATA+TGG	-	chr3.1:70869042-70869061	MS.gene013833:intron	30.0%
ATTTGTTTGGAAAAACCATG+TGG	-	chr3.1:70866975-70866994	MS.gene013833:intron	30.0%
CATACATATCCTGGAAAAAA+TGG	+	chr3.1:70867322-70867341	None:intergenic	30.0%
GAAATACGAATTTACTGTAG+TGG	+	chr3.1:70868558-70868577	None:intergenic	30.0%
GATATAATTGACACATGGTT+AGG	-	chr3.1:70867059-70867078	MS.gene013833:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	70866442	70869792	70866442	ID=MS.gene013833
chr3.1	mRNA	70866442	70869792	70866442	ID=MS.gene013833.t1;Parent=MS.gene013833
chr3.1	exon	70869445	70869792	70869445	ID=MS.gene013833.t1.exon1;Parent=MS.gene013833.t1
chr3.1	CDS	70869445	70869792	70869445	ID=cds.MS.gene013833.t1;Parent=MS.gene013833.t1
chr3.1	exon	70868387	70868902	70868387	ID=MS.gene013833.t1.exon2;Parent=MS.gene013833.t1
chr3.1	CDS	70868387	70868902	70868387	ID=cds.MS.gene013833.t1;Parent=MS.gene013833.t1
chr3.1	exon	70867856	70868091	70867856	ID=MS.gene013833.t1.exon3;Parent=MS.gene013833.t1
chr3.1	CDS	70867856	70868091	70867856	ID=cds.MS.gene013833.t1;Parent=MS.gene013833.t1
chr3.1	exon	70867486	70867753	70867486	ID=MS.gene013833.t1.exon4;Parent=MS.gene013833.t1
chr3.1	CDS	70867486	70867753	70867486	ID=cds.MS.gene013833.t1;Parent=MS.gene013833.t1
chr3.1	exon	70867253	70867390	70867253	ID=MS.gene013833.t1.exon5;Parent=MS.gene013833.t1
chr3.1	CDS	70867253	70867390	70867253	ID=cds.MS.gene013833.t1;Parent=MS.gene013833.t1
chr3.1	exon	70866442	70866684	70866442	ID=MS.gene013833.t1.exon6;Parent=MS.gene013833.t1
chr3.1	CDS	70866442	70866684	70866442	ID=cds.MS.gene013833.t1;Parent=MS.gene013833.t1

Gene Sequence

>MS.gene013833

ATGGCTGCAGTTATGTTATTATGGCGTGCCATCGCATGCCTCCTCTTTGTTTCCAGTTTGGCATCTGCTTCTGCCAAAAATGGACACACAAAAACAAGAAATGAAGTAATCATTGCTCATCATGGAGCTGTTGCAACCGATGATCGTCGATGCTCGAAGATTGGGATGGATGTTATCCAAGAAGGGGGACATGCAGTGGATGCAGCTGTGGCTGCTGCTCTTTGTTTGGGAGTTGTCAGTTCAGCTTCAAGTGGTATTGGTGGCGGTGCCTTTATGCTTCTTAGGTTAGCTAATGGTGTAGCAAAGGCCTTTGATATGAGAGAAACTGCTCCTCTTCATGCTTCCAAGGTACTTTTCAATCATGGACTAAAATTATTCCTTTGCATATAGTTTCCAAGATTTTAATTAAATAGTGGCGGTGGACGAGGATGATCATGTCATGATATCTGATGCAGCCTCAATCGCGGTTGCGCTGACCGCGTTGACATATCAAAACACTTTTATGTTGTAGTCCAAGTTGCGCACTTGCAGACATTTGTTTGGAAAAACCATGTGGTGTAGAGAAATGAAAAGGACACATGTAGAGGAAACTAGTAAGAAAAGTCTAGTAGATGGATGATATAATTGACACATGGTTAGGAATTTTTCTTTTTAATTGTGATAGAGAGAAGACGAAAGCTAACCACAGAGAATAAATTTCTAGAATTACTGAAAACAATGTTTTAACATTTTTTAGAATTTTCAGAAATGTTGAATCTATTTTAATTTCTCTGCATTTCAAACCTCAAAATTTTCTCTTCTCATTAATTTTACAGAAAAATTTAACACTATAGTGAATGAATTTGTTGAAATCACTCTTCTATGCCATATGATACATCCATTTTTTCCAGGATATGTATGGTGGCAACACTACTTTGAAGGCAAATGGTGGCCTCTCGGTAGCAGTTCCAGGAGAACTAGCTGGCCTTCACAAGGCATGGGAACAACATGGAAAGCTTCCATGGAATAGACTTGTAATGCCATCAGTGATTCTTGCTAGTAGAGGGTTTAAAATATCACCATACCTTCACATGCAGATGGAAAAAACAGAATCAAATATATCGAATGACATTGGTCTTAGTAGTGTATTTGCACCACATGGAAAACTCTTGAAAGCAGGTGAAATATGTTATAATAAGAAACTAGGAGAAACTCTAAGAGCAATTGCAAAGTTTGGTCCACAAGCTTTGTATGGTGGAATAGTTGGCATTAATTTAGTTAAAGATGTTCAGAAGGCTGGAGGGATATTGACATTGGAAGACCTCAAAAAGTACACTGTTAAACAAAAGGAACCTATATCTATAGATTTTCTTGGATTAAAGATCCTTGGTATGCCTCCTCCTTCAGGTGGGCCTCAAATGATGCTGGTAAGTTAATTTACCGTGTTCTTTTCTATATAAGGAGTTCTGTTTTGTTTTTCTTTCCTATTTATAAAAATAGATGGGGGCATTGTCCCGTGGTACAATCGTTGTTCAACCCAACTGCAATGTAAATGGGATCAAACCAACCGGCGGACCGTCTGGTTTCTGGTTCAACCTGTTGATCCGGCAGTTCAAACCAGTTTTTAAAATATTGAGTTATATTATGATATGACGTACTATGTTTTTATTTTTCTCTCTGTCAATAAAAAAGGGCTTAGCCACTCTCATCTTTCTGTTACAGCTGCTGAACATTCTAGCACAATATGAGCTTCCTTCAGGCCTTTCTGGTTCCCTTGGGATCCATAGAGAAATCGAGGCTTTGAAACATGTATTTTCAGTTAGAATGAATCTTGGGGATCCTGATTTTGTAAATATAACTGAAGTTCTTTCTGACATGCTTTCTACCAAGTTTGCTCAAGTGTTGAAAAAAGACATCAATGATAATAAGACTTATGATTCAAGTCATTATGGTGGCAAGTAAGTTTCTGCGTTCGTTTAATTAACTTCAAAGTCACTGTAATATTCTTGTACCAGCAATTTAATTAATTGCAGTAAATTTCATTCATTCCCTCTTTATAGGTGGAATCAGATAAATGATCATGGTACAAGTCATTTAAGCATAATAGATTTTGAGAGAAATGCTGTTTCCATGACCACTACAGTAAATTCGTATTTCGGTGCAACAATACTTTCACCAAGTACAGGAATAGTACTCAACAATGAGATGGATGATTTTTCCATGCCTGTAAAAAATGTTTCCAAGGATGTTCGACCGCCTGCTCCTGCCAATTTCGTCGTGCCGGGGAAGAGACCATTATCATCCATGTCACCAACTATTGTTCTCAAGGTTCTTCCACATTGCAGAATAATTTTTGATAGCAATGATTATGAAATTCTATTATCATTTGTTGAAGATATTTTGTAATATTTGTGTTACTACAGGACAGGGAAGTGAAAGCAGTAGTAGGTGCAAGTGGAGGAATTATGATTATTGCTGCAACTTCAGAGGTTCTTTTGAATCACTTTGTCAAAGGAATGGATCCTTTTTCTTCTGTAACTGCTCCTAGGGTCTATCATCAGGTATGGAATCTTACATTTGTTCTGGTTGCATATTTTTTGCTTATATTCTGGTAAGCTCTAATTCAGAGCTATGTGAAATATGGACAAATTTAGAATATTTATTGTGCTACAGATGTAATCAATAACATCATTAAAACCTAGGAAAACTCAAAATGTTATCTACTTGTAGTCTCATCTTGGACAATAATATAGACATGACATGAAAAATAGTTATAAGTGGGACAGCTCTCATGACATGGAAAATTAAATAGATGTCTAATCCTAACTTAGTCCTACGTATAGAGTTATGTCATCAATTATTTCCTAAATTATTTATATACAAACAAATATTAACTTAGTAAAGTATAATTGGATGTTTGTGTGAAATTTTTTATACTGTTTAAACATAATAACTAAAATCTTAATAAAATAGTAAAAATTGTACATCAAATTAGAATTACCATTGATCATTTTTTAAAAATATGAAGATAAATGTGGATGTACAGCAAGATCACAAGGCATACTTTCCTCAAACCAATCAATCACATAACTGATGAGAAATTAACTCACCGTATGGTTGATTATGCAGCTGATACCTAATGTGGTATATTATGAGAACTGGACAACAGTGACCGGGGACCACTTTGAACTTTCTGCTAATATCAGGGAAAGCCTTAGAAGTAAGGGCCATGTCCTTCAGAGCCTTGCTGGTGGGACAATATGTCAATTTATCGTTTCAGACACTTCTGAACATTCCAAAATAAATAAAGGTGTAGGAAAGCTTGTGGCCGTAAGTGATCCAAGAAAGGGTGGTTTTCCTGCAGGCATTTGA

Protein sequence

>MS.gene013833.t1

MAAVMLLWRAIACLLFVSSLASASAKNGHTKTRNEVIIAHHGAVATDDRRCSKIGMDVIQEGGHAVDAAVAAALCLGVVSSASSGIGGGAFMLLRLANGVAKAFDMRETAPLHASKDMYGGNTTLKANGGLSVAVPGELAGLHKAWEQHGKLPWNRLVMPSVILASRGFKISPYLHMQMEKTESNISNDIGLSSVFAPHGKLLKAGEICYNKKLGETLRAIAKFGPQALYGGIVGINLVKDVQKAGGILTLEDLKKYTVKQKEPISIDFLGLKILGMPPPSGGPQMMLLLNILAQYELPSGLSGSLGIHREIEALKHVFSVRMNLGDPDFVNITEVLSDMLSTKFAQVLKKDINDNKTYDSSHYGGKWNQINDHGTSHLSIIDFERNAVSMTTTVNSYFGATILSPSTGIVLNNEMDDFSMPVKNVSKDVRPPAPANFVVPGKRPLSSMSPTIVLKDREVKAVVGASGGIMIIAATSEVLLNHFVKGMDPFSSVTAPRVYHQLIPNVVYYENWTTVTGDHFELSANIRESLRSKGHVLQSLAGGTICQFIVSDTSEHSKINKGVGKLVAVSDPRKGGFPAGI