Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020136.t1 | XP_003626895.2 | 88.9 | 369 | 19 | 2 | 1 | 360 | 1 | 356 | 1.30E-171 | 612.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020136.t1 | Q9FPT1 | 39.1 | 128 | 73 | 3 | 27 | 153 | 56 | 179 | 2.3e-20 | 101.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020136.t1 | G7LEE7 | 88.9 | 369 | 19 | 2 | 1 | 360 | 1 | 356 | 9.3e-172 | 612.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038300 | MS.gene020136 | PPI |
| MS.gene017083 | MS.gene020136 | PPI |
| MS.gene057066 | MS.gene020136 | PPI |
| MS.gene030037 | MS.gene020136 | PPI |
| MS.gene038327 | MS.gene020136 | PPI |
| MS.gene030033 | MS.gene020136 | PPI |
| MS.gene057070 | MS.gene020136 | PPI |
| MS.gene038326 | MS.gene020136 | PPI |
| MS.gene038328 | MS.gene020136 | PPI |
| MS.gene057090 | MS.gene020136 | PPI |
| MS.gene017115 | MS.gene020136 | PPI |
| MS.gene038336 | MS.gene020136 | PPI |
| MS.gene057065 | MS.gene020136 | PPI |
| MS.gene030045 | MS.gene020136 | PPI |
| MS.gene017099 | MS.gene020136 | PPI |
| MS.gene057069 | MS.gene020136 | PPI |
| MS.gene038323 | MS.gene020136 | PPI |
| MS.gene038333 | MS.gene020136 | PPI |
| MS.gene017100 | MS.gene020136 | PPI |
| MS.gene030029 | MS.gene020136 | PPI |
| MS.gene030026 | MS.gene020136 | PPI |
| MS.gene038324 | MS.gene020136 | PPI |
| MS.gene038330 | MS.gene020136 | PPI |
| MS.gene017102 | MS.gene020136 | PPI |
| MS.gene017101 | MS.gene020136 | PPI |
| MS.gene030042 | MS.gene020136 | PPI |
| MS.gene038342 | MS.gene020136 | PPI |
| MS.gene030034 | MS.gene020136 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020136.t1 | MTR_8g011730 | 87.805 | 369 | 23 | 2 | 1 | 360 | 1 | 356 | 0.0 | 659 |
| MS.gene020136.t1 | MTR_7g107200 | 33.588 | 393 | 175 | 9 | 25 | 358 | 11 | 376 | 2.40e-62 | 204 |
| MS.gene020136.t1 | MTR_1g042160 | 32.464 | 345 | 173 | 8 | 25 | 356 | 11 | 308 | 7.03e-49 | 167 |
| MS.gene020136.t1 | MTR_7g107160 | 32.394 | 355 | 180 | 10 | 25 | 357 | 128 | 444 | 1.74e-47 | 167 |
| MS.gene020136.t1 | MTR_7g107170 | 39.181 | 171 | 90 | 2 | 201 | 359 | 98 | 266 | 1.11e-33 | 125 |
| MS.gene020136.t1 | MTR_8g011750 | 48.750 | 160 | 33 | 3 | 212 | 359 | 61 | 183 | 9.28e-28 | 107 |
| MS.gene020136.t1 | MTR_2g034780 | 43.182 | 132 | 70 | 2 | 214 | 345 | 117 | 243 | 1.51e-27 | 109 |
| MS.gene020136.t1 | MTR_3g079840 | 37.086 | 151 | 87 | 5 | 5 | 154 | 38 | 181 | 4.05e-24 | 104 |
| MS.gene020136.t1 | MTR_3g079840 | 37.086 | 151 | 87 | 5 | 5 | 154 | 37 | 180 | 4.28e-24 | 104 |
| MS.gene020136.t1 | MTR_1g041240 | 35.948 | 153 | 91 | 3 | 1 | 153 | 36 | 181 | 5.99e-24 | 103 |
| MS.gene020136.t1 | MTR_1g041240 | 35.948 | 153 | 91 | 3 | 1 | 153 | 34 | 179 | 6.33e-24 | 103 |
| MS.gene020136.t1 | MTR_1g041240 | 37.063 | 143 | 83 | 3 | 11 | 153 | 45 | 180 | 1.66e-23 | 102 |
| MS.gene020136.t1 | MTR_5g086700 | 36.424 | 151 | 86 | 5 | 5 | 154 | 44 | 185 | 1.74e-22 | 99.8 |
| MS.gene020136.t1 | MTR_5g086700 | 36.424 | 151 | 86 | 5 | 5 | 154 | 44 | 185 | 1.76e-22 | 99.8 |
| MS.gene020136.t1 | MTR_5g091450 | 30.357 | 168 | 100 | 6 | 4 | 164 | 17 | 174 | 1.07e-20 | 94.0 |
| MS.gene020136.t1 | MTR_5g091180 | 29.310 | 174 | 109 | 5 | 6 | 171 | 28 | 195 | 1.76e-17 | 84.3 |
| MS.gene020136.t1 | MTR_5g091550 | 28.824 | 170 | 106 | 6 | 14 | 172 | 3 | 168 | 8.57e-14 | 72.8 |
| MS.gene020136.t1 | MTR_5g091550 | 28.472 | 144 | 95 | 4 | 14 | 153 | 3 | 142 | 1.41e-13 | 72.0 |
| MS.gene020136.t1 | MTR_8g006190 | 29.915 | 117 | 79 | 2 | 44 | 157 | 10 | 126 | 1.24e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020136.t1 | AT5G06600 | 38.889 | 144 | 80 | 5 | 11 | 153 | 43 | 179 | 2.62e-24 | 105 |
| MS.gene020136.t1 | AT5G06600 | 38.889 | 144 | 80 | 5 | 11 | 153 | 43 | 179 | 2.69e-24 | 105 |
| MS.gene020136.t1 | AT5G06600 | 38.889 | 144 | 80 | 5 | 11 | 153 | 42 | 178 | 2.74e-24 | 105 |
| MS.gene020136.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 55 | 178 | 1.05e-22 | 100 |
| MS.gene020136.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 55 | 178 | 1.05e-22 | 100 |
| MS.gene020136.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 54 | 177 | 1.07e-22 | 100 |
| MS.gene020136.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 54 | 177 | 1.07e-22 | 100 |
| MS.gene020136.t1 | AT3G58270 | 28.934 | 197 | 114 | 6 | 27 | 222 | 8 | 179 | 1.16e-14 | 74.7 |
| MS.gene020136.t1 | AT3G58270 | 28.934 | 197 | 114 | 6 | 27 | 222 | 8 | 179 | 1.16e-14 | 74.7 |
| MS.gene020136.t1 | AT3G58270 | 28.934 | 197 | 114 | 6 | 27 | 222 | 8 | 179 | 1.16e-14 | 74.7 |
| MS.gene020136.t1 | AT3G58260 | 23.100 | 329 | 199 | 11 | 28 | 347 | 9 | 292 | 1.75e-14 | 73.9 |
| MS.gene020136.t1 | AT3G58410 | 34.109 | 129 | 77 | 4 | 26 | 153 | 7 | 128 | 2.84e-13 | 70.5 |
| MS.gene020136.t1 | AT3G58200 | 33.333 | 117 | 74 | 2 | 27 | 142 | 8 | 121 | 1.78e-12 | 67.8 |
| MS.gene020136.t1 | AT3G58340 | 31.783 | 129 | 83 | 3 | 26 | 153 | 7 | 131 | 1.18e-11 | 65.5 |
| MS.gene020136.t1 | AT3G58340 | 31.783 | 129 | 83 | 3 | 26 | 153 | 7 | 131 | 1.51e-11 | 65.1 |
| MS.gene020136.t1 | AT3G58210 | 31.250 | 128 | 85 | 2 | 27 | 153 | 8 | 133 | 2.46e-11 | 64.7 |
Find 73 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCAATTTGGTCGATTTC+AGG | 0.169180 | 8.3:-77672581 | MS.gene020136:CDS |
| CCAATTGCAGATTCAAAATA+TGG | 0.175455 | 8.3:+77672237 | None:intergenic |
| CAAGTTCTTCCCATAAAATT+TGG | 0.190981 | 8.3:+77672292 | None:intergenic |
| TGTCAATTTGTGTCTCAATT+TGG | 0.326986 | 8.3:-77672592 | MS.gene020136:CDS |
| GAGTTGTTCTCGTTCCCTTT+TGG | 0.329267 | 8.3:+77673223 | None:intergenic |
| AGAATTTGTAGAGAGGGATT+TGG | 0.337842 | 8.3:-77672103 | MS.gene020136:CDS |
| TCATGGCATCCCTCACTCTT+AGG | 0.346575 | 8.3:-77672507 | MS.gene020136:CDS |
| TGTCGACAAGTTCATACATT+TGG | 0.371497 | 8.3:-77672763 | MS.gene020136:CDS |
| GGGTATGCTTTCTCTTCCTC+TGG | 0.393097 | 8.3:+77672415 | None:intergenic |
| CTTGTCATTATCAATTCTTT+CGG | 0.397618 | 8.3:-77673194 | MS.gene020136:CDS |
| TCAATGCAAGTAATTATTGC+TGG | 0.402960 | 8.3:-77672788 | MS.gene020136:CDS |
| TCTCAATTTGGTCGATTTCA+GGG | 0.409905 | 8.3:-77672580 | MS.gene020136:CDS |
| TGCTAGAGGAAGCATGTTCA+TGG | 0.445186 | 8.3:-77672524 | MS.gene020136:CDS |
| CGGATTGTTATGAATCCAAA+AGG | 0.446814 | 8.3:-77673238 | MS.gene020136:CDS |
| TGCAAGAGGAAGCATGTTCA+TGG | 0.451060 | 8.3:-77672458 | MS.gene020136:CDS |
| GACAATTGTGAGCAAGGCAT+TGG | 0.453163 | 8.3:+77673096 | None:intergenic |
| TACCCGTAGGTTTAGAGAAT+GGG | 0.453188 | 8.3:-77672397 | MS.gene020136:CDS |
| GAATGGGCATTAACAGCATT+AGG | 0.453931 | 8.3:-77672381 | MS.gene020136:CDS |
| TTGGTCGATTTCAGGGGCTT+AGG | 0.454796 | 8.3:-77672573 | MS.gene020136:CDS |
| TAAACGCCTTCCACGGGTTG+TGG | 0.470028 | 8.3:+77672733 | None:intergenic |
| CCTCTGGTTGTCAACAATTG+TGG | 0.483718 | 8.3:+77672431 | None:intergenic |
| ATTATTTCTGTCAGTGAACA+TGG | 0.487693 | 8.3:-77672678 | MS.gene020136:CDS |
| CTCAATTTGGTCGATTTCAG+GGG | 0.493207 | 8.3:-77672579 | MS.gene020136:CDS |
| GTATCTATCAGAAACTGAAC+AGG | 0.494410 | 8.3:-77672814 | MS.gene020136:intron |
| AAGATATGTAAATCTTGAGT+TGG | 0.500018 | 8.3:-77673134 | MS.gene020136:CDS |
| CAATCGTCCATGGGGACCAT+GGG | 0.500110 | 8.3:+77673488 | None:intergenic |
| ACACACGAGGGCACTTGCGC+TGG | 0.507100 | 8.3:+77672612 | None:intergenic |
| AGAGATATGCAAATGTGAAA+AGG | 0.508744 | 8.3:-77672197 | MS.gene020136:CDS |
| TGGTCCCCATGGACGATTGA+GGG | 0.515597 | 8.3:-77673484 | MS.gene020136:CDS |
| ATGCCCATTCTCTAAACCTA+CGG | 0.516472 | 8.3:+77672394 | None:intergenic |
| GCTTGACCCTCAATCGTCCA+TGG | 0.517170 | 8.3:+77673478 | None:intergenic |
| TGGGAAGAACTTGAGACAGT+TGG | 0.519283 | 8.3:-77672282 | MS.gene020136:CDS |
| ATACTTGTATTATTAAAGCT+CGG | 0.520080 | 8.3:-77672701 | MS.gene020136:CDS |
| TAACTTTGTTCCACTGCAAG+AGG | 0.524678 | 8.3:-77672472 | MS.gene020136:CDS |
| ATACCCGTAGGTTTAGAGAA+TGG | 0.527008 | 8.3:-77672398 | MS.gene020136:CDS |
| TCAATCGTCCATGGGGACCA+TGG | 0.527312 | 8.3:+77673487 | None:intergenic |
| TGATCAAGAAGTTAGCAAGA+TGG | 0.527799 | 8.3:-77672640 | MS.gene020136:CDS |
| AGGGATTTGGATGCTAAACT+AGG | 0.527986 | 8.3:-77672090 | MS.gene020136:CDS |
| TGAATTGCTCAATCGTCCAC+GGG | 0.529664 | 8.3:+77673440 | None:intergenic |
| TTCACAATAAACGCCTTCCA+CGG | 0.534253 | 8.3:+77672726 | None:intergenic |
| TTGGATGCTAAACTAGGCTA+TGG | 0.541199 | 8.3:-77672084 | MS.gene020136:CDS |
| ACCTTTGACAATTGTGAGCA+AGG | 0.542077 | 8.3:+77673090 | None:intergenic |
| GTCTACTTTGCCTAAGAGTG+AGG | 0.544093 | 8.3:+77672497 | None:intergenic |
| CTTGACCCTCAATCGTCCAT+GGG | 0.550339 | 8.3:+77673479 | None:intergenic |
| TCACAATAAACGCCTTCCAC+GGG | 0.552149 | 8.3:+77672727 | None:intergenic |
| TGCCCATTCTCTAAACCTAC+GGG | 0.552945 | 8.3:+77672395 | None:intergenic |
| ATGGTCCCCATGGACGATTG+AGG | 0.573393 | 8.3:-77673485 | MS.gene020136:CDS |
| AAAATTTGTTCCGCTGCTAG+AGG | 0.575127 | 8.3:-77672538 | MS.gene020136:CDS |
| GTGAATTGCTCAATCGTCCA+CGG | 0.575431 | 8.3:+77673439 | None:intergenic |
| ATGTGATTCTCAGATGTACT+CGG | 0.577748 | 8.3:-77673392 | MS.gene020136:CDS |
| ATATATCCCCATGGTCCCCA+TGG | 0.581426 | 8.3:-77673495 | MS.gene020136:CDS |
| TCTACTTTGCCTAAGAGTGA+GGG | 0.587618 | 8.3:+77672498 | None:intergenic |
| ATGCAAATGTGAAAAGGCTG+AGG | 0.588552 | 8.3:-77672191 | MS.gene020136:CDS |
| AAAGGGAACGAGAACAACTC+TGG | 0.589691 | 8.3:-77673220 | MS.gene020136:CDS |
| TGAACTCCACAACCCGTGGA+AGG | 0.594970 | 8.3:-77672739 | MS.gene020136:CDS |
| GAACATGCTTCCTCTTGCAG+TGG | 0.596932 | 8.3:+77672462 | None:intergenic |
| TTCAAAATATGGCTTCAACC+AGG | 0.606260 | 8.3:+77672248 | None:intergenic |
| GCCTTGCTCACAATTGTCAA+AGG | 0.607799 | 8.3:-77673091 | MS.gene020136:intron |
| GGATTGTTATGAATCCAAAA+GGG | 0.625720 | 8.3:-77673237 | MS.gene020136:CDS |
| CCACAATTGTTGACAACCAG+AGG | 0.635348 | 8.3:-77672431 | MS.gene020136:CDS |
| TGGATGAACTCCACAACCCG+TGG | 0.638922 | 8.3:-77672743 | MS.gene020136:CDS |
| TTATTTCTGTCAGTGAACAT+GGG | 0.642647 | 8.3:-77672677 | MS.gene020136:CDS |
| GGAAGAGAAAGCATACCCGT+AGG | 0.643866 | 8.3:-77672410 | MS.gene020136:CDS |
| GAACATGCTTCCTCTAGCAG+CGG | 0.657845 | 8.3:+77672528 | None:intergenic |
| AAGGCTGAGGAAGACTGTAG+AGG | 0.657859 | 8.3:-77672178 | MS.gene020136:CDS |
| AGATGGAGAATATATCCCCA+TGG | 0.669547 | 8.3:-77673504 | MS.gene020136:CDS |
| GGACGATTGAGCAATTCACA+TGG | 0.676776 | 8.3:-77673435 | MS.gene020136:CDS |
| AATCGTCCATGGGGACCATG+GGG | 0.696115 | 8.3:+77673489 | None:intergenic |
| TTGACCCTCAATCGTCCATG+GGG | 0.705695 | 8.3:+77673480 | None:intergenic |
| AGACACAAATTGACACACGA+GGG | 0.720376 | 8.3:+77672600 | None:intergenic |
| GAGACACAAATTGACACACG+AGG | 0.721625 | 8.3:+77672599 | None:intergenic |
| GAATTGCTCAATCGTCCACG+GGG | 0.742076 | 8.3:+77673441 | None:intergenic |
| CATTTGAGAATATATCCCCG+TGG | 0.771145 | 8.3:-77673456 | MS.gene020136:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAGCATAAAAAACA+TGG | + | chr8.3:77672292-77672311 | None:intergenic | 15.0% |
| !! | ATACTTGTATTATTAAAGCT+CGG | - | chr8.3:77672875-77672894 | MS.gene020136:intron | 20.0% |
| !! | CAACTATTGATATAATTAAC+AGG | + | chr8.3:77672566-77672585 | None:intergenic | 20.0% |
| !!! | ACAATTGCTTTTACATTTTT+TGG | - | chr8.3:77672522-77672541 | MS.gene020136:CDS | 20.0% |
| !!! | ACATTTTCTAAACACTAAAA+GGG | - | chr8.3:77673227-77673246 | MS.gene020136:CDS | 20.0% |
| !!! | AGTCTTGAAATTTTATTACT+TGG | - | chr8.3:77672634-77672653 | MS.gene020136:CDS | 20.0% |
| !!! | CTTTTACATTTTTTGGTATA+AGG | - | chr8.3:77672529-77672548 | MS.gene020136:CDS | 20.0% |
| !!! | TAATCATCTCCAAATTTTAT+GGG | - | chr8.3:77673275-77673294 | MS.gene020136:intron | 20.0% |
| !!! | TACATTTTCTAAACACTAAA+AGG | - | chr8.3:77673226-77673245 | MS.gene020136:CDS | 20.0% |
| !!! | TTATTGATTTTTCTAAAGAC+TGG | - | chr8.3:77672417-77672436 | MS.gene020136:CDS | 20.0% |
| !!! | TTTTTAAATGTTTTCGATGT+TGG | - | chr8.3:77672307-77672326 | MS.gene020136:CDS | 20.0% |
| ! | AAGATATGTAAATCTTGAGT+TGG | - | chr8.3:77672442-77672461 | MS.gene020136:CDS | 25.0% |
| ! | AGAAAAAGAATTTGTAGAGA+GGG | - | chr8.3:77673467-77673486 | MS.gene020136:CDS | 25.0% |
| ! | ATATAATTAACAGGATGTCA+TGG | + | chr8.3:77672557-77672576 | None:intergenic | 25.0% |
| ! | CTTGTCATTATCAATTCTTT+CGG | - | chr8.3:77672382-77672401 | MS.gene020136:CDS | 25.0% |
| !! | GTAATCATCTCCAAATTTTA+TGG | - | chr8.3:77673274-77673293 | MS.gene020136:intron | 25.0% |
| !!! | ATGAACTTTCCTTTATTTTG+TGG | - | chr8.3:77672668-77672687 | MS.gene020136:CDS | 25.0% |
| AGAGATATGCAAATGTGAAA+AGG | - | chr8.3:77673379-77673398 | MS.gene020136:CDS | 30.0% | |
| CAAGTTCTTCCCATAAAATT+TGG | + | chr8.3:77673287-77673306 | None:intergenic | 30.0% | |
| CAGAAAAAGAATTTGTAGAG+AGG | - | chr8.3:77673466-77673485 | MS.gene020136:CDS | 30.0% | |
| CCAATTGCAGATTCAAAATA+TGG | + | chr8.3:77673342-77673361 | None:intergenic | 30.0% | |
| GGATTGTTATGAATCCAAAA+GGG | - | chr8.3:77672339-77672358 | MS.gene020136:CDS | 30.0% | |
| TCAATGCAAGTAATTATTGC+TGG | - | chr8.3:77672788-77672807 | MS.gene020136:CDS | 30.0% | |
| TGTCAATTTGTGTCTCAATT+TGG | - | chr8.3:77672984-77673003 | MS.gene020136:intron | 30.0% | |
| !! | ATTATTTCTGTCAGTGAACA+TGG | - | chr8.3:77672898-77672917 | MS.gene020136:intron | 30.0% |
| !! | CCATATTTTGAATCTGCAAT+TGG | - | chr8.3:77673339-77673358 | MS.gene020136:intron | 30.0% |
| !! | TTATTTCTGTCAGTGAACAT+GGG | - | chr8.3:77672899-77672918 | MS.gene020136:intron | 30.0% |
| AGAATTTGTAGAGAGGGATT+TGG | - | chr8.3:77673473-77673492 | MS.gene020136:CDS | 35.0% | |
| ATGTGATTCTCAGATGTACT+CGG | - | chr8.3:77672184-77672203 | MS.gene020136:CDS | 35.0% | |
| CGGATTGTTATGAATCCAAA+AGG | - | chr8.3:77672338-77672357 | MS.gene020136:CDS | 35.0% | |
| GTATCTATCAGAAACTGAAC+AGG | - | chr8.3:77672762-77672781 | MS.gene020136:CDS | 35.0% | |
| TGATCAAGAAGTTAGCAAGA+TGG | - | chr8.3:77672936-77672955 | MS.gene020136:intron | 35.0% | |
| TGCAACATCATATGAAGACT+TGG | - | chr8.3:77672600-77672619 | MS.gene020136:CDS | 35.0% | |
| TGTCGACAAGTTCATACATT+TGG | - | chr8.3:77672813-77672832 | MS.gene020136:intron | 35.0% | |
| TTCAAAATATGGCTTCAACC+AGG | + | chr8.3:77673331-77673350 | None:intergenic | 35.0% | |
| ! | TCTCAATTTGGTCGATTTCA+GGG | - | chr8.3:77672996-77673015 | MS.gene020136:intron | 35.0% |
| !! | GATACATAAAGTGTCGTGTT+CGG | + | chr8.3:77672747-77672766 | None:intergenic | 35.0% |
| !!! | CAGTTGGTTTTGATTTATCC+TGG | - | chr8.3:77673310-77673329 | MS.gene020136:intron | 35.0% |
| !!! | TGTTTTCGATGTTGGTTTTC+AGG | - | chr8.3:77672315-77672334 | MS.gene020136:CDS | 35.0% |
| ACCTTTGACAATTGTGAGCA+AGG | + | chr8.3:77672489-77672508 | None:intergenic | 40.0% | |
| AGACACAAATTGACACACGA+GGG | + | chr8.3:77672979-77672998 | None:intergenic | 40.0% | |
| AGGGATTTGGATGCTAAACT+AGG | - | chr8.3:77673486-77673505 | MS.gene020136:CDS | 40.0% | |
| ATACCCGTAGGTTTAGAGAA+TGG | - | chr8.3:77673178-77673197 | MS.gene020136:CDS | 40.0% | |
| ATGCAAATGTGAAAAGGCTG+AGG | - | chr8.3:77673385-77673404 | MS.gene020136:CDS | 40.0% | |
| ATGCCCATTCTCTAAACCTA+CGG | + | chr8.3:77673185-77673204 | None:intergenic | 40.0% | |
| CACGCTCAACCACAAAATAA+AGG | + | chr8.3:77672680-77672699 | None:intergenic | 40.0% | |
| CATTTGAGAATATATCCCCG+TGG | - | chr8.3:77672120-77672139 | MS.gene020136:CDS | 40.0% | |
| CGTATGTGTATGCAGTAAAC+TGG | + | chr8.3:77672257-77672276 | None:intergenic | 40.0% | |
| GAATGGGCATTAACAGCATT+AGG | - | chr8.3:77673195-77673214 | MS.gene020136:CDS | 40.0% | |
| TAACTTTGTTCCACTGCAAG+AGG | - | chr8.3:77673104-77673123 | MS.gene020136:CDS | 40.0% | |
| TACCCGTAGGTTTAGAGAAT+GGG | - | chr8.3:77673179-77673198 | MS.gene020136:CDS | 40.0% | |
| TCTACTTTGCCTAAGAGTGA+GGG | + | chr8.3:77673081-77673100 | None:intergenic | 40.0% | |
| TTCACAATAAACGCCTTCCA+CGG | + | chr8.3:77672853-77672872 | None:intergenic | 40.0% | |
| TTGGATGCTAAACTAGGCTA+TGG | - | chr8.3:77673492-77673511 | MS.gene020136:CDS | 40.0% | |
| ! | AAAATTTGTTCCGCTGCTAG+AGG | - | chr8.3:77673038-77673057 | MS.gene020136:intron | 40.0% |
| ! | CTCAATTTGGTCGATTTCAG+GGG | - | chr8.3:77672997-77673016 | MS.gene020136:intron | 40.0% |
| ! | GTCTCAATTTGGTCGATTTC+AGG | - | chr8.3:77672995-77673014 | MS.gene020136:intron | 40.0% |
| ! | TTTTCATGAGTGGCTATCCA+TGG | - | chr8.3:77672213-77672232 | MS.gene020136:CDS | 40.0% |
| !!! | TCGGAGAGTTTTTTCATGAG+TGG | - | chr8.3:77672203-77672222 | MS.gene020136:CDS | 40.0% |
| !!! | TTTCGATGTTGGTTTTCAGG+CGG | - | chr8.3:77672318-77672337 | MS.gene020136:CDS | 40.0% |
| AAAGGGAACGAGAACAACTC+TGG | - | chr8.3:77672356-77672375 | MS.gene020136:CDS | 45.0% | |
| CCACAATTGTTGACAACCAG+AGG | - | chr8.3:77673145-77673164 | MS.gene020136:CDS | 45.0% | |
| CCTCTGGTTGTCAACAATTG+TGG | + | chr8.3:77673148-77673167 | None:intergenic | 45.0% | |
| GACAATTGTGAGCAAGGCAT+TGG | + | chr8.3:77672483-77672502 | None:intergenic | 45.0% | |
| GAGACACAAATTGACACACG+AGG | + | chr8.3:77672980-77672999 | None:intergenic | 45.0% | |
| GCCTTGCTCACAATTGTCAA+AGG | - | chr8.3:77672485-77672504 | MS.gene020136:CDS | 45.0% | |
| GGACGATTGAGCAATTCACA+TGG | - | chr8.3:77672141-77672160 | MS.gene020136:CDS | 45.0% | |
| GTCTACTTTGCCTAAGAGTG+AGG | + | chr8.3:77673082-77673101 | None:intergenic | 45.0% | |
| GTGAATTGCTCAATCGTCCA+CGG | + | chr8.3:77672140-77672159 | None:intergenic | 45.0% | |
| TCACAATAAACGCCTTCCAC+GGG | + | chr8.3:77672852-77672871 | None:intergenic | 45.0% | |
| TGAATTGCTCAATCGTCCAC+GGG | + | chr8.3:77672139-77672158 | None:intergenic | 45.0% | |
| TGCCCATTCTCTAAACCTAC+GGG | + | chr8.3:77673184-77673203 | None:intergenic | 45.0% | |
| TGGGAAGAACTTGAGACAGT+TGG | - | chr8.3:77673294-77673313 | MS.gene020136:intron | 45.0% | |
| ! | GAGTTGTTCTCGTTCCCTTT+TGG | + | chr8.3:77672356-77672375 | None:intergenic | 45.0% |
| ! | TGCAAGAGGAAGCATGTTCA+TGG | - | chr8.3:77673118-77673137 | MS.gene020136:CDS | 45.0% |
| ! | TGCTAGAGGAAGCATGTTCA+TGG | - | chr8.3:77673052-77673071 | MS.gene020136:intron | 45.0% |
| AAGGCTGAGGAAGACTGTAG+AGG | - | chr8.3:77673398-77673417 | MS.gene020136:CDS | 50.0% | |
| ATATATCCCCATGGTCCCCA+TGG | - | chr8.3:77672081-77672100 | MS.gene020136:CDS | 50.0% | |
| ATTCACTCGAGCACCAACCA+TGG | + | chr8.3:77672233-77672252 | None:intergenic | 50.0% | |
| CATGAGTGGCTATCCATGGT+TGG | - | chr8.3:77672217-77672236 | MS.gene020136:CDS | 50.0% | |
| CTTGACCCTCAATCGTCCAT+GGG | + | chr8.3:77672100-77672119 | None:intergenic | 50.0% | |
| GAACATGCTTCCTCTAGCAG+CGG | + | chr8.3:77673051-77673070 | None:intergenic | 50.0% | |
| GAACATGCTTCCTCTTGCAG+TGG | + | chr8.3:77673117-77673136 | None:intergenic | 50.0% | |
| GAATTGCTCAATCGTCCACG+GGG | + | chr8.3:77672138-77672157 | None:intergenic | 50.0% | |
| GGGTATGCTTTCTCTTCCTC+TGG | + | chr8.3:77673164-77673183 | None:intergenic | 50.0% | |
| TCATGGCATCCCTCACTCTT+AGG | - | chr8.3:77673069-77673088 | MS.gene020136:intron | 50.0% | |
| TTGACCCTCAATCGTCCATG+GGG | + | chr8.3:77672099-77672118 | None:intergenic | 50.0% | |
| ! | GGAAGAGAAAGCATACCCGT+AGG | - | chr8.3:77673166-77673185 | MS.gene020136:CDS | 50.0% |
| ! | TTGGTCGATTTCAGGGGCTT+AGG | - | chr8.3:77673003-77673022 | MS.gene020136:intron | 50.0% |
| AATCGTCCATGGGGACCATG+GGG | + | chr8.3:77672090-77672109 | None:intergenic | 55.0% | |
| ATGGTCCCCATGGACGATTG+AGG | - | chr8.3:77672091-77672110 | MS.gene020136:CDS | 55.0% | |
| CAATCGTCCATGGGGACCAT+GGG | + | chr8.3:77672091-77672110 | None:intergenic | 55.0% | |
| GCTTGACCCTCAATCGTCCA+TGG | + | chr8.3:77672101-77672120 | None:intergenic | 55.0% | |
| TCAATCGTCCATGGGGACCA+TGG | + | chr8.3:77672092-77672111 | None:intergenic | 55.0% | |
| TGAACTCCACAACCCGTGGA+AGG | - | chr8.3:77672837-77672856 | MS.gene020136:intron | 55.0% | |
| TGGATGAACTCCACAACCCG+TGG | - | chr8.3:77672833-77672852 | MS.gene020136:intron | 55.0% | |
| TGGTCCCCATGGACGATTGA+GGG | - | chr8.3:77672092-77672111 | MS.gene020136:CDS | 55.0% | |
| ! | TAAACGCCTTCCACGGGTTG+TGG | + | chr8.3:77672846-77672865 | None:intergenic | 55.0% |
| !! | ACACACGAGGGCACTTGCGC+TGG | + | chr8.3:77672967-77672986 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 77672074 | 77673524 | 77672074 | ID=MS.gene020136 |
| chr8.3 | mRNA | 77672074 | 77673524 | 77672074 | ID=MS.gene020136.t1;Parent=MS.gene020136 |
| chr8.3 | exon | 77673364 | 77673524 | 77673364 | ID=MS.gene020136.t1.exon1;Parent=MS.gene020136.t1 |
| chr8.3 | CDS | 77673364 | 77673524 | 77673364 | ID=cds.MS.gene020136.t1;Parent=MS.gene020136.t1 |
| chr8.3 | exon | 77673092 | 77673261 | 77673092 | ID=MS.gene020136.t1.exon2;Parent=MS.gene020136.t1 |
| chr8.3 | CDS | 77673092 | 77673261 | 77673092 | ID=cds.MS.gene020136.t1;Parent=MS.gene020136.t1 |
| chr8.3 | exon | 77672074 | 77672825 | 77672074 | ID=MS.gene020136.t1.exon3;Parent=MS.gene020136.t1 |
| chr8.3 | CDS | 77672074 | 77672825 | 77672074 | ID=cds.MS.gene020136.t1;Parent=MS.gene020136.t1 |
| Gene Sequence |
| Protein sequence |
