Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020137.t1 | XP_003626895.2 | 64.1 | 329 | 87 | 4 | 15 | 317 | 8 | 331 | 1.90E-110 | 409.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020137.t1 | Q9FPT1 | 38.3 | 149 | 83 | 4 | 19 | 166 | 54 | 194 | 7.9e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020137.t1 | G7LEE7 | 64.1 | 329 | 87 | 4 | 15 | 317 | 8 | 331 | 1.4e-110 | 409.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020137.t1 | MTR_8g011730 | 64.134 | 329 | 87 | 4 | 15 | 317 | 8 | 331 | 2.75e-144 | 411 |
| MS.gene020137.t1 | MTR_7g107200 | 38.507 | 335 | 158 | 9 | 20 | 314 | 12 | 338 | 6.36e-69 | 219 |
| MS.gene020137.t1 | MTR_1g042160 | 34.114 | 299 | 155 | 6 | 20 | 314 | 12 | 272 | 3.49e-47 | 161 |
| MS.gene020137.t1 | MTR_7g107160 | 35.831 | 307 | 153 | 9 | 20 | 313 | 129 | 404 | 3.49e-46 | 162 |
| MS.gene020137.t1 | MTR_7g107170 | 44.444 | 135 | 65 | 2 | 177 | 311 | 100 | 224 | 1.73e-30 | 116 |
| MS.gene020137.t1 | MTR_2g034780 | 40.260 | 154 | 79 | 5 | 165 | 315 | 91 | 234 | 2.79e-29 | 113 |
| MS.gene020137.t1 | MTR_5g086700 | 34.104 | 173 | 94 | 5 | 5 | 165 | 45 | 209 | 2.73e-23 | 100 |
| MS.gene020137.t1 | MTR_5g086700 | 34.104 | 173 | 94 | 5 | 5 | 165 | 45 | 209 | 2.89e-23 | 100 |
| MS.gene020137.t1 | MTR_3g079840 | 34.659 | 176 | 91 | 7 | 5 | 165 | 39 | 205 | 5.67e-23 | 100 |
| MS.gene020137.t1 | MTR_3g079840 | 34.659 | 176 | 91 | 7 | 5 | 165 | 38 | 204 | 5.77e-23 | 100 |
| MS.gene020137.t1 | MTR_1g041240 | 36.552 | 145 | 81 | 4 | 7 | 151 | 46 | 179 | 6.83e-23 | 99.8 |
| MS.gene020137.t1 | MTR_1g041240 | 36.552 | 145 | 81 | 4 | 7 | 151 | 48 | 181 | 6.90e-23 | 99.8 |
| MS.gene020137.t1 | MTR_1g041240 | 38.168 | 131 | 73 | 3 | 21 | 151 | 58 | 180 | 7.30e-23 | 99.8 |
| MS.gene020137.t1 | MTR_8g011750 | 56.881 | 109 | 10 | 1 | 209 | 317 | 88 | 159 | 1.31e-22 | 93.2 |
| MS.gene020137.t1 | MTR_5g091450 | 32.886 | 149 | 86 | 4 | 10 | 151 | 16 | 157 | 3.50e-21 | 94.7 |
| MS.gene020137.t1 | MTR_5g091180 | 30.921 | 152 | 93 | 5 | 4 | 151 | 27 | 170 | 5.55e-17 | 82.0 |
| MS.gene020137.t1 | MTR_5g091550 | 31.159 | 138 | 85 | 5 | 15 | 151 | 14 | 142 | 1.47e-13 | 71.2 |
| MS.gene020137.t1 | MTR_5g091550 | 31.159 | 138 | 85 | 5 | 15 | 151 | 14 | 142 | 1.56e-13 | 71.2 |
| MS.gene020137.t1 | MTR_3g106700 | 26.667 | 150 | 102 | 3 | 13 | 156 | 398 | 545 | 2.28e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020137.t1 | AT5G06600 | 38.816 | 152 | 76 | 6 | 1 | 151 | 44 | 179 | 7.10e-23 | 99.8 |
| MS.gene020137.t1 | AT5G06600 | 41.045 | 134 | 70 | 4 | 19 | 151 | 53 | 178 | 7.85e-23 | 99.8 |
| MS.gene020137.t1 | AT5G06600 | 41.045 | 134 | 70 | 4 | 19 | 151 | 54 | 179 | 8.08e-23 | 99.8 |
| MS.gene020137.t1 | AT3G11910 | 38.462 | 156 | 83 | 5 | 1 | 151 | 30 | 177 | 1.27e-22 | 99.0 |
| MS.gene020137.t1 | AT3G11910 | 38.462 | 156 | 83 | 5 | 1 | 151 | 30 | 177 | 1.27e-22 | 99.0 |
| MS.gene020137.t1 | AT3G11910 | 38.462 | 156 | 83 | 5 | 1 | 151 | 31 | 178 | 1.31e-22 | 99.0 |
| MS.gene020137.t1 | AT3G11910 | 38.462 | 156 | 83 | 5 | 1 | 151 | 31 | 178 | 1.31e-22 | 99.0 |
| MS.gene020137.t1 | AT3G58270 | 33.333 | 138 | 81 | 4 | 20 | 154 | 7 | 136 | 9.62e-16 | 77.4 |
| MS.gene020137.t1 | AT3G58270 | 33.333 | 138 | 81 | 4 | 20 | 154 | 7 | 136 | 9.62e-16 | 77.4 |
| MS.gene020137.t1 | AT3G58270 | 33.333 | 138 | 81 | 4 | 20 | 154 | 7 | 136 | 9.62e-16 | 77.4 |
| MS.gene020137.t1 | AT3G58340 | 28.169 | 284 | 170 | 11 | 8 | 281 | 2 | 261 | 2.58e-15 | 75.9 |
| MS.gene020137.t1 | AT3G58260 | 30.201 | 149 | 95 | 5 | 22 | 168 | 9 | 150 | 1.83e-14 | 73.2 |
| MS.gene020137.t1 | AT3G58340 | 33.103 | 145 | 81 | 5 | 8 | 151 | 2 | 131 | 1.95e-14 | 73.2 |
| MS.gene020137.t1 | AT3G58250 | 25.379 | 264 | 157 | 8 | 21 | 281 | 10 | 236 | 5.04e-14 | 72.0 |
| MS.gene020137.t1 | AT2G05410 | 34.351 | 131 | 78 | 4 | 22 | 151 | 9 | 132 | 6.01e-14 | 71.6 |
| MS.gene020137.t1 | AT3G58290 | 26.277 | 274 | 171 | 10 | 21 | 281 | 11 | 266 | 2.28e-13 | 69.7 |
| MS.gene020137.t1 | AT3G58350 | 34.328 | 134 | 78 | 4 | 21 | 151 | 8 | 134 | 2.24e-12 | 67.0 |
| MS.gene020137.t1 | AT3G58350 | 34.328 | 134 | 78 | 4 | 21 | 151 | 8 | 134 | 2.24e-12 | 67.0 |
| MS.gene020137.t1 | AT3G58210 | 28.125 | 160 | 106 | 4 | 20 | 178 | 7 | 158 | 3.08e-12 | 67.0 |
| MS.gene020137.t1 | AT3G58200 | 31.148 | 122 | 76 | 3 | 20 | 140 | 7 | 121 | 3.91e-11 | 63.5 |
| MS.gene020137.t1 | AT3G44790 | 30.921 | 152 | 91 | 5 | 20 | 168 | 4 | 144 | 7.61e-11 | 62.8 |
| MS.gene020137.t1 | AT2G01790 | 31.126 | 151 | 97 | 4 | 24 | 173 | 11 | 155 | 8.19e-11 | 62.0 |
Find 68 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACCATGGATAGCCTTTC+AGG | 0.170273 | 8.3:+77678296 | None:intergenic |
| TCAAAGAAAGTAGTTATTAT+TGG | 0.174067 | 8.3:-77677738 | MS.gene020137:CDS |
| CAAGTTCTTCCCATAAGATT+TGG | 0.257908 | 8.3:+77677290 | None:intergenic |
| CTCAATTGCTTTACTGTTTG+AGG | 0.266683 | 8.3:+77678408 | None:intergenic |
| GGGTTGTTCTTGCTCCCTTT+TGG | 0.270422 | 8.3:+77678172 | None:intergenic |
| GAGATTTCTTTGACAGGAAT+TGG | 0.299184 | 8.3:+77677550 | None:intergenic |
| GTGACCGTCTCCAAATCTTA+TGG | 0.306166 | 8.3:-77677300 | MS.gene020137:CDS |
| ACATATCTGCTCCACCCTTT+AGG | 0.335250 | 8.3:+77678097 | None:intergenic |
| AGGGATCTTGCAACAGCATT+TGG | 0.338617 | 8.3:-77677145 | MS.gene020137:CDS |
| TCAATTGCTTTACTGTTTGA+GGG | 0.376683 | 8.3:+77678409 | None:intergenic |
| TGTCGACAAGTTCGTACATT+TGG | 0.378990 | 8.3:-77677713 | MS.gene020137:CDS |
| GTGAATTGATCGGTCGTCCC+TGG | 0.385107 | 8.3:+77678376 | None:intergenic |
| GTTCCCTTACAGAAATAATC+CGG | 0.402417 | 8.3:+77677632 | None:intergenic |
| TGACCGTCTCCAAATCTTAT+GGG | 0.412483 | 8.3:-77677299 | MS.gene020137:CDS |
| TGGATGCACTTCGCAACTCT+TGG | 0.416130 | 8.3:-77677693 | MS.gene020137:CDS |
| GAGTACGCTTTCTCTTCGTC+TGG | 0.426166 | 8.3:+77677413 | None:intergenic |
| TGAATTGATCGGTCGTCCCT+GGG | 0.427968 | 8.3:+77678377 | None:intergenic |
| TGACAATTTAGTCGATTTCA+AGG | 0.437357 | 8.3:-77677512 | MS.gene020137:CDS |
| TGCTTGAGGAAGTATGTTCA+TGG | 0.445188 | 8.3:-77677456 | MS.gene020137:CDS |
| TTAGTCGATTTCAAGGGTAT+AGG | 0.451950 | 8.3:-77677505 | MS.gene020137:CDS |
| CGGATTGTTATGAATCCAAA+AGG | 0.453634 | 8.3:-77678187 | MS.gene020137:CDS |
| TTATCAATTTATTTGAATGT+TGG | 0.454715 | 8.3:-77678136 | MS.gene020137:CDS |
| AAGCCCGGATTATTTCTGTA+AGG | 0.456756 | 8.3:-77677636 | MS.gene020137:CDS |
| TTGACAGGAATTGGTTGTGC+TGG | 0.461911 | 8.3:+77677559 | None:intergenic |
| GAATGGGCATTCACAGCATT+GGG | 0.473439 | 8.3:-77677379 | MS.gene020137:CDS |
| GCTGAAGAGATTTCTTTGAC+AGG | 0.481214 | 8.3:+77677544 | None:intergenic |
| ATTGATAATGACAAGTAACC+TGG | 0.484403 | 8.3:+77678151 | None:intergenic |
| AGAATGGGCATTCACAGCAT+TGG | 0.493798 | 8.3:-77677380 | MS.gene020137:CDS |
| TGGGAAGAACTTGAGACAGT+TGG | 0.496978 | 8.3:-77677280 | MS.gene020137:CDS |
| CTCATTGCAGATAAATAAGA+AGG | 0.497112 | 8.3:+77677235 | None:intergenic |
| TACTCATAGATTTACAGAAT+GGG | 0.503133 | 8.3:-77677395 | MS.gene020137:CDS |
| CAGATATGTAAATCTTGAGT+TGG | 0.510067 | 8.3:-77678083 | MS.gene020137:CDS |
| AGCCCGGATTATTTCTGTAA+GGG | 0.517386 | 8.3:-77677635 | MS.gene020137:CDS |
| ATAAATGTATTATTAAAGCC+CGG | 0.529564 | 8.3:-77677651 | MS.gene020137:CDS |
| TTCCCTTACAGAAATAATCC+GGG | 0.529811 | 8.3:+77677633 | None:intergenic |
| AGAATGTAGAACTTATAGAG+AGG | 0.534364 | 8.3:-77677165 | MS.gene020137:CDS |
| ATTATTTCTGTAAGGGAACA+AGG | 0.538894 | 8.3:-77677628 | MS.gene020137:CDS |
| TCTTCCTGAAAGGCTATCCA+TGG | 0.543293 | 8.3:-77678300 | MS.gene020137:CDS |
| TCAGAAAGTTTCTTCCTGAA+AGG | 0.544381 | 8.3:-77678310 | MS.gene020137:CDS |
| CCTGAAAGGCTATCCATGGT+TGG | 0.544873 | 8.3:-77678296 | MS.gene020137:CDS |
| CACTTCGCAACTCTTGGAGT+GGG | 0.545439 | 8.3:-77677687 | MS.gene020137:CDS |
| CTTCTTATTTATCTGCAATG+AGG | 0.548108 | 8.3:-77677234 | MS.gene020137:CDS |
| GCATTGCTAACAATTGCAAA+AGG | 0.549086 | 8.3:-77678040 | MS.gene020137:intron |
| TCTGTAAGGGAACAAGGGTA+TGG | 0.550428 | 8.3:-77677622 | MS.gene020137:CDS |
| AAAATTTGTTCCGTTGCTTG+AGG | 0.557169 | 8.3:-77677470 | MS.gene020137:CDS |
| GTACGTCTTAGAATCACATT+GGG | 0.557415 | 8.3:+77678333 | None:intergenic |
| AGTACGTCTTAGAATCACAT+TGG | 0.574179 | 8.3:+77678332 | None:intergenic |
| GAATGTAGAACTTATAGAGA+GGG | 0.580859 | 8.3:-77677164 | MS.gene020137:CDS |
| GCAATTGAGAAGAAATCCCC+AGG | 0.581773 | 8.3:-77678394 | MS.gene020137:CDS |
| GACAATTTAGTCGATTTCAA+GGG | 0.584262 | 8.3:-77677511 | MS.gene020137:CDS |
| GTACTCATAGATTTACAGAA+TGG | 0.591630 | 8.3:-77677396 | MS.gene020137:CDS |
| AATCGTCCATGTGAATTGAT+CGG | 0.597888 | 8.3:+77678366 | None:intergenic |
| GTCTGGTTGTCAACAAGTGA+TGG | 0.601061 | 8.3:+77677430 | None:intergenic |
| TGTTTAGAAAATATAGAACT+CGG | 0.608458 | 8.3:+77677356 | None:intergenic |
| GCACTTCGCAACTCTTGGAG+TGG | 0.609049 | 8.3:-77677688 | MS.gene020137:CDS |
| CGATCAAGAAGTTAGTGCGG+TGG | 0.612814 | 8.3:-77677590 | MS.gene020137:CDS |
| ATCGACTAAATTGTCACATG+AGG | 0.615457 | 8.3:+77677519 | None:intergenic |
| ATTTACTCAAGCACCAACCA+TGG | 0.618169 | 8.3:+77678283 | None:intergenic |
| TTGATAATGACAAGTAACCT+GGG | 0.628332 | 8.3:+77678152 | None:intergenic |
| GAACATACTTCCTCAAGCAA+CGG | 0.629733 | 8.3:+77677460 | None:intergenic |
| GGATTGTTATGAATCCAAAA+GGG | 0.632540 | 8.3:-77678186 | MS.gene020137:CDS |
| CTTCCCATAAGATTTGGAGA+CGG | 0.640150 | 8.3:+77677296 | None:intergenic |
| GGACGACCGATCAATTCACA+TGG | 0.663616 | 8.3:-77678372 | MS.gene020137:CDS |
| TTATTTCTGTAAGGGAACAA+GGG | 0.671435 | 8.3:-77677627 | MS.gene020137:CDS |
| AAAGGGAGCAAGAACAACCC+AGG | 0.672868 | 8.3:-77678169 | MS.gene020137:CDS |
| GAATTGATCGGTCGTCCCTG+GGG | 0.691397 | 8.3:+77678378 | None:intergenic |
| CAATTGAGAAGAAATCCCCA+GGG | 0.717237 | 8.3:-77678393 | MS.gene020137:CDS |
| AAACGATCAAGAAGTTAGTG+CGG | 0.726212 | 8.3:-77677593 | MS.gene020137:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAGAATAGTTTATATA+AGG | + | chr8.3:77677755-77677774 | None:intergenic | 15.0% |
| !! | GTAAAGAATAGTTTATATAA+GGG | + | chr8.3:77677754-77677773 | None:intergenic | 15.0% |
| !! | TTATATAAGGGATAAAAATA+TGG | + | chr8.3:77677742-77677761 | None:intergenic | 15.0% |
| !! | TTATCAATTTATTTGAATGT+TGG | - | chr8.3:77677423-77677442 | MS.gene020137:CDS | 15.0% |
| !!! | AACAATTAGTTTTACATTTT+TGG | - | chr8.3:77677555-77677574 | MS.gene020137:CDS | 15.0% |
| !!! | ATATTTTCTAAACACTAAAA+AGG | - | chr8.3:77678212-77678231 | MS.gene020137:intron | 15.0% |
| !! | AAAATCAATAACAGATGTTA+TGG | + | chr8.3:77677590-77677609 | None:intergenic | 20.0% |
| !! | ATAAATGTATTATTAAAGCC+CGG | - | chr8.3:77677908-77677927 | MS.gene020137:intron | 20.0% |
| !! | TCAAAGAAAGTAGTTATTAT+TGG | - | chr8.3:77677821-77677840 | MS.gene020137:intron | 20.0% |
| !! | TGTTTAGAAAATATAGAACT+CGG | + | chr8.3:77678206-77678225 | None:intergenic | 20.0% |
| !!! | ACAATTTTAATCTTCCTAAA+GGG | - | chr8.3:77677448-77677467 | MS.gene020137:CDS | 20.0% |
| !!! | ACTTTCCTCTAATTTTTTAT+TGG | - | chr8.3:77677687-77677706 | MS.gene020137:CDS | 20.0% |
| !!! | TTGTTTTCGATATTTTTTTC+AGG | - | chr8.3:77677349-77677368 | MS.gene020137:CDS | 20.0% |
| ! | CACATCCAATAAAAAATTAG+AGG | + | chr8.3:77677695-77677714 | None:intergenic | 25.0% |
| ! | TACTCATAGATTTACAGAAT+GGG | - | chr8.3:77678164-77678183 | MS.gene020137:CDS | 25.0% |
| !! | CTTTTCTATCATCTACAATA+TGG | - | chr8.3:77677647-77677666 | MS.gene020137:CDS | 25.0% |
| !!! | GACAATTTTAATCTTCCTAA+AGG | - | chr8.3:77677447-77677466 | MS.gene020137:CDS | 25.0% |
| !!! | TTTTCGATATTTTTTTCAGG+CGG | - | chr8.3:77677352-77677371 | MS.gene020137:CDS | 25.0% |
| AAATGTATTGCAACACCATA+TGG | - | chr8.3:77677624-77677643 | MS.gene020137:CDS | 30.0% | |
| AGAATGTAGAACTTATAGAG+AGG | - | chr8.3:77678394-77678413 | MS.gene020137:CDS | 30.0% | |
| CAGATATGTAAATCTTGAGT+TGG | - | chr8.3:77677476-77677495 | MS.gene020137:CDS | 30.0% | |
| CTCATTGCAGATAAATAAGA+AGG | + | chr8.3:77678327-77678346 | None:intergenic | 30.0% | |
| GAATGTAGAACTTATAGAGA+GGG | - | chr8.3:77678395-77678414 | MS.gene020137:CDS | 30.0% | |
| GATATGCGTATGTAGTAAAT+TGG | + | chr8.3:77677303-77677322 | None:intergenic | 30.0% | |
| GGATTGTTATGAATCCAAAA+GGG | - | chr8.3:77677373-77677392 | MS.gene020137:CDS | 30.0% | |
| GTACTCATAGATTTACAGAA+TGG | - | chr8.3:77678163-77678182 | MS.gene020137:CDS | 30.0% | |
| TAGATGATAGAAAAGCCATA+TGG | + | chr8.3:77677642-77677661 | None:intergenic | 30.0% | |
| TCAATTGCTTTACTGTTTGA+GGG | + | chr8.3:77677153-77677172 | None:intergenic | 30.0% | |
| ! | CTTCTTATTTATCTGCAATG+AGG | - | chr8.3:77678325-77678344 | MS.gene020137:CDS | 30.0% |
| ! | GACAATTTAGTCGATTTCAA+GGG | - | chr8.3:77678048-77678067 | MS.gene020137:CDS | 30.0% |
| ! | TGACAATTTAGTCGATTTCA+AGG | - | chr8.3:77678047-77678066 | MS.gene020137:CDS | 30.0% |
| !! | ATTATTTCTGTAAGGGAACA+AGG | - | chr8.3:77677931-77677950 | MS.gene020137:intron | 30.0% |
| !! | ATTGATAATGACAAGTAACC+TGG | + | chr8.3:77677411-77677430 | None:intergenic | 30.0% |
| !! | ATTTTAATCTTCCTAAAGGG+TGG | - | chr8.3:77677451-77677470 | MS.gene020137:CDS | 30.0% |
| !! | TTATTTCTGTAAGGGAACAA+GGG | - | chr8.3:77677932-77677951 | MS.gene020137:intron | 30.0% |
| !! | TTGATAATGACAAGTAACCT+GGG | + | chr8.3:77677410-77677429 | None:intergenic | 30.0% |
| !!! | CAGTTGGTTTTGATTTATCT+TGG | - | chr8.3:77678295-77678314 | MS.gene020137:CDS | 30.0% |
| AAACGATCAAGAAGTTAGTG+CGG | - | chr8.3:77677966-77677985 | MS.gene020137:intron | 35.0% | |
| AATCGTCCATGTGAATTGAT+CGG | + | chr8.3:77677196-77677215 | None:intergenic | 35.0% | |
| AGTACGTCTTAGAATCACAT+TGG | + | chr8.3:77677230-77677249 | None:intergenic | 35.0% | |
| ATCGACTAAATTGTCACATG+AGG | + | chr8.3:77678043-77678062 | None:intergenic | 35.0% | |
| CAAGTTCTTCCCATAAGATT+TGG | + | chr8.3:77678272-77678291 | None:intergenic | 35.0% | |
| CGGATTGTTATGAATCCAAA+AGG | - | chr8.3:77677372-77677391 | MS.gene020137:CDS | 35.0% | |
| CTCAATTGCTTTACTGTTTG+AGG | + | chr8.3:77677154-77677173 | None:intergenic | 35.0% | |
| GAGATTTCTTTGACAGGAAT+TGG | + | chr8.3:77678012-77678031 | None:intergenic | 35.0% | |
| GCATTGCTAACAATTGCAAA+AGG | - | chr8.3:77677519-77677538 | MS.gene020137:CDS | 35.0% | |
| GTACGTCTTAGAATCACATT+GGG | + | chr8.3:77677229-77677248 | None:intergenic | 35.0% | |
| GTTCCCTTACAGAAATAATC+CGG | + | chr8.3:77677930-77677949 | None:intergenic | 35.0% | |
| TCAGAAAGTTTCTTCCTGAA+AGG | - | chr8.3:77677249-77677268 | MS.gene020137:CDS | 35.0% | |
| TTCCCTTACAGAAATAATCC+GGG | + | chr8.3:77677929-77677948 | None:intergenic | 35.0% | |
| ! | AAAATTTGTTCCGTTGCTTG+AGG | - | chr8.3:77678089-77678108 | MS.gene020137:CDS | 35.0% |
| ! | TTAGTCGATTTCAAGGGTAT+AGG | - | chr8.3:77678054-77678073 | MS.gene020137:CDS | 35.0% |
| ! | TTTTCACATTTGCTTCTCTC+TGG | + | chr8.3:77678365-77678384 | None:intergenic | 35.0% |
| ATTTACTCAAGCACCAACCA+TGG | + | chr8.3:77677279-77677298 | None:intergenic | 40.0% | |
| CAATTGAGAAGAAATCCCCA+GGG | - | chr8.3:77677166-77677185 | MS.gene020137:CDS | 40.0% | |
| CTTCCCATAAGATTTGGAGA+CGG | + | chr8.3:77678266-77678285 | None:intergenic | 40.0% | |
| GAACATACTTCCTCAAGCAA+CGG | + | chr8.3:77678102-77678121 | None:intergenic | 40.0% | |
| GCTGAAGAGATTTCTTTGAC+AGG | + | chr8.3:77678018-77678037 | None:intergenic | 40.0% | |
| GTTCAGTTTCTGATAGAGAG+AGG | + | chr8.3:77677795-77677814 | None:intergenic | 40.0% | |
| TGACCGTCTCCAAATCTTAT+GGG | - | chr8.3:77678260-77678279 | MS.gene020137:intron | 40.0% | |
| TGTCGACAAGTTCGTACATT+TGG | - | chr8.3:77677846-77677865 | MS.gene020137:intron | 40.0% | |
| ! | TGCTTGAGGAAGTATGTTCA+TGG | - | chr8.3:77678103-77678122 | MS.gene020137:CDS | 40.0% |
| !! | AAGCCCGGATTATTTCTGTA+AGG | - | chr8.3:77677923-77677942 | MS.gene020137:intron | 40.0% |
| !! | AGCCCGGATTATTTCTGTAA+GGG | - | chr8.3:77677924-77677943 | MS.gene020137:intron | 40.0% |
| ACATATCTGCTCCACCCTTT+AGG | + | chr8.3:77677465-77677484 | None:intergenic | 45.0% | |
| AGAATGGGCATTCACAGCAT+TGG | - | chr8.3:77678179-77678198 | MS.gene020137:CDS | 45.0% | |
| AGGGATCTTGCAACAGCATT+TGG | - | chr8.3:77678414-77678433 | MS.gene020137:CDS | 45.0% | |
| GAATGGGCATTCACAGCATT+GGG | - | chr8.3:77678180-77678199 | MS.gene020137:CDS | 45.0% | |
| GCAATTGAGAAGAAATCCCC+AGG | - | chr8.3:77677165-77677184 | MS.gene020137:CDS | 45.0% | |
| GTCTGGTTGTCAACAAGTGA+TGG | + | chr8.3:77678132-77678151 | None:intergenic | 45.0% | |
| GTGACCGTCTCCAAATCTTA+TGG | - | chr8.3:77678259-77678278 | MS.gene020137:intron | 45.0% | |
| TCTGTAAGGGAACAAGGGTA+TGG | - | chr8.3:77677937-77677956 | MS.gene020137:intron | 45.0% | |
| TCTTCCTGAAAGGCTATCCA+TGG | - | chr8.3:77677259-77677278 | MS.gene020137:CDS | 45.0% | |
| TGGGAAGAACTTGAGACAGT+TGG | - | chr8.3:77678279-77678298 | MS.gene020137:intron | 45.0% | |
| TTGACAGGAATTGGTTGTGC+TGG | + | chr8.3:77678003-77678022 | None:intergenic | 45.0% | |
| AAAGGGAGCAAGAACAACCC+AGG | - | chr8.3:77677390-77677409 | MS.gene020137:CDS | 50.0% | |
| CACTTCGCAACTCTTGGAGT+GGG | - | chr8.3:77677872-77677891 | MS.gene020137:intron | 50.0% | |
| CCAACCATGGATAGCCTTTC+AGG | + | chr8.3:77677266-77677285 | None:intergenic | 50.0% | |
| CCTGAAAGGCTATCCATGGT+TGG | - | chr8.3:77677263-77677282 | MS.gene020137:CDS | 50.0% | |
| CGATCAAGAAGTTAGTGCGG+TGG | - | chr8.3:77677969-77677988 | MS.gene020137:intron | 50.0% | |
| GAGTACGCTTTCTCTTCGTC+TGG | + | chr8.3:77678149-77678168 | None:intergenic | 50.0% | |
| GGACGACCGATCAATTCACA+TGG | - | chr8.3:77677187-77677206 | MS.gene020137:CDS | 50.0% | |
| TGAATTGATCGGTCGTCCCT+GGG | + | chr8.3:77677185-77677204 | None:intergenic | 50.0% | |
| TGGATGCACTTCGCAACTCT+TGG | - | chr8.3:77677866-77677885 | MS.gene020137:intron | 50.0% | |
| ! | GGGTTGTTCTTGCTCCCTTT+TGG | + | chr8.3:77677390-77677409 | None:intergenic | 50.0% |
| GAATTGATCGGTCGTCCCTG+GGG | + | chr8.3:77677184-77677203 | None:intergenic | 55.0% | |
| GCACTTCGCAACTCTTGGAG+TGG | - | chr8.3:77677871-77677890 | MS.gene020137:intron | 55.0% | |
| GTGAATTGATCGGTCGTCCC+TGG | + | chr8.3:77677186-77677205 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 77677138 | 77678443 | 77677138 | ID=MS.gene020137 |
| chr8.3 | mRNA | 77677138 | 77678443 | 77677138 | ID=MS.gene020137.t1;Parent=MS.gene020137 |
| chr8.3 | exon | 77678289 | 77678443 | 77678289 | ID=MS.gene020137.t1.exon1;Parent=MS.gene020137.t1 |
| chr8.3 | CDS | 77678289 | 77678443 | 77678289 | ID=cds.MS.gene020137.t1;Parent=MS.gene020137.t1 |
| chr8.3 | exon | 77678041 | 77678210 | 77678041 | ID=MS.gene020137.t1.exon2;Parent=MS.gene020137.t1 |
| chr8.3 | CDS | 77678041 | 77678210 | 77678041 | ID=cds.MS.gene020137.t1;Parent=MS.gene020137.t1 |
| chr8.3 | exon | 77677138 | 77677775 | 77677138 | ID=MS.gene020137.t1.exon3;Parent=MS.gene020137.t1 |
| chr8.3 | CDS | 77677138 | 77677775 | 77677138 | ID=cds.MS.gene020137.t1;Parent=MS.gene020137.t1 |
| Gene Sequence |
| Protein sequence |
