Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022810.t1 | XP_003626895.2 | 67.9 | 349 | 85 | 3 | 15 | 337 | 8 | 355 | 3.50E-126 | 461.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022810.t1 | Q9FPT1 | 36.9 | 168 | 90 | 4 | 19 | 174 | 54 | 217 | 2.3e-22 | 107.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022810.t1 | G7LEE7 | 67.9 | 349 | 85 | 3 | 15 | 337 | 8 | 355 | 2.5e-126 | 461.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022810.t1 | MTR_8g011730 | 67.908 | 349 | 85 | 3 | 15 | 337 | 8 | 355 | 6.60e-166 | 466 |
MS.gene022810.t1 | MTR_7g107200 | 36.667 | 390 | 183 | 10 | 1 | 338 | 1 | 378 | 1.62e-76 | 239 |
MS.gene022810.t1 | MTR_1g042160 | 34.139 | 331 | 168 | 6 | 20 | 334 | 12 | 308 | 7.16e-53 | 176 |
MS.gene022810.t1 | MTR_7g107160 | 33.815 | 346 | 175 | 8 | 20 | 338 | 129 | 447 | 9.91e-51 | 175 |
MS.gene022810.t1 | MTR_8g011750 | 59.701 | 134 | 17 | 1 | 205 | 338 | 88 | 184 | 1.00e-36 | 130 |
MS.gene022810.t1 | MTR_7g107170 | 40.678 | 177 | 83 | 3 | 173 | 337 | 100 | 266 | 2.74e-36 | 132 |
MS.gene022810.t1 | MTR_2g034780 | 40.588 | 170 | 89 | 5 | 155 | 322 | 83 | 242 | 1.43e-32 | 122 |
MS.gene022810.t1 | MTR_5g086700 | 37.576 | 165 | 84 | 5 | 9 | 161 | 52 | 209 | 3.96e-26 | 109 |
MS.gene022810.t1 | MTR_5g086700 | 37.576 | 165 | 84 | 5 | 9 | 161 | 52 | 209 | 4.08e-26 | 109 |
MS.gene022810.t1 | MTR_3g079840 | 38.562 | 153 | 78 | 4 | 21 | 161 | 56 | 204 | 4.96e-26 | 109 |
MS.gene022810.t1 | MTR_3g079840 | 38.562 | 153 | 78 | 4 | 21 | 161 | 57 | 205 | 5.06e-26 | 109 |
MS.gene022810.t1 | MTR_1g041240 | 37.589 | 141 | 81 | 3 | 7 | 147 | 48 | 181 | 1.90e-24 | 104 |
MS.gene022810.t1 | MTR_1g041240 | 37.589 | 141 | 81 | 3 | 7 | 147 | 47 | 180 | 1.91e-24 | 104 |
MS.gene022810.t1 | MTR_1g041240 | 37.589 | 141 | 81 | 3 | 7 | 147 | 46 | 179 | 1.95e-24 | 104 |
MS.gene022810.t1 | MTR_5g091450 | 34.483 | 145 | 85 | 3 | 10 | 147 | 16 | 157 | 1.85e-23 | 101 |
MS.gene022810.t1 | MTR_5g091180 | 34.375 | 128 | 80 | 2 | 21 | 147 | 46 | 170 | 1.75e-19 | 89.7 |
MS.gene022810.t1 | MTR_5g091550 | 32.836 | 134 | 84 | 4 | 15 | 147 | 14 | 142 | 4.89e-16 | 79.3 |
MS.gene022810.t1 | MTR_5g091550 | 32.836 | 134 | 84 | 4 | 15 | 147 | 14 | 142 | 5.09e-16 | 79.3 |
MS.gene022810.t1 | MTR_3g106700 | 27.333 | 150 | 97 | 2 | 13 | 152 | 398 | 545 | 3.34e-13 | 71.2 |
MS.gene022810.t1 | MTR_8g006190 | 28.261 | 138 | 93 | 3 | 38 | 172 | 10 | 144 | 1.96e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022810.t1 | AT3G11910 | 37.288 | 177 | 91 | 5 | 1 | 161 | 30 | 202 | 1.10e-25 | 108 |
MS.gene022810.t1 | AT3G11910 | 37.288 | 177 | 91 | 5 | 1 | 161 | 30 | 202 | 1.10e-25 | 108 |
MS.gene022810.t1 | AT3G11910 | 37.288 | 177 | 91 | 5 | 1 | 161 | 31 | 203 | 1.10e-25 | 108 |
MS.gene022810.t1 | AT3G11910 | 37.288 | 177 | 91 | 5 | 1 | 161 | 31 | 203 | 1.10e-25 | 108 |
MS.gene022810.t1 | AT5G06600 | 38.710 | 155 | 79 | 4 | 19 | 161 | 54 | 204 | 1.30e-25 | 108 |
MS.gene022810.t1 | AT5G06600 | 38.710 | 155 | 79 | 4 | 19 | 161 | 54 | 204 | 1.30e-25 | 108 |
MS.gene022810.t1 | AT5G06600 | 38.710 | 155 | 79 | 4 | 19 | 161 | 53 | 203 | 1.34e-25 | 108 |
MS.gene022810.t1 | AT3G58270 | 29.891 | 184 | 115 | 4 | 20 | 200 | 7 | 179 | 7.84e-17 | 80.9 |
MS.gene022810.t1 | AT3G58270 | 29.891 | 184 | 115 | 4 | 20 | 200 | 7 | 179 | 7.84e-17 | 80.9 |
MS.gene022810.t1 | AT3G58270 | 29.891 | 184 | 115 | 4 | 20 | 200 | 7 | 179 | 7.84e-17 | 80.9 |
MS.gene022810.t1 | AT3G58260 | 23.899 | 318 | 192 | 10 | 22 | 324 | 9 | 291 | 1.85e-16 | 79.3 |
MS.gene022810.t1 | AT3G58340 | 27.143 | 280 | 174 | 9 | 8 | 277 | 2 | 261 | 5.61e-16 | 77.8 |
MS.gene022810.t1 | AT3G58340 | 33.333 | 141 | 82 | 4 | 8 | 147 | 2 | 131 | 1.85e-15 | 76.6 |
MS.gene022810.t1 | AT3G58410 | 32.692 | 156 | 90 | 6 | 21 | 174 | 8 | 150 | 2.03e-15 | 76.3 |
MS.gene022810.t1 | AT3G58290 | 27.037 | 270 | 170 | 9 | 21 | 277 | 11 | 266 | 3.40e-15 | 75.1 |
MS.gene022810.t1 | AT2G05410 | 31.013 | 158 | 102 | 4 | 22 | 175 | 9 | 163 | 9.26e-15 | 74.3 |
MS.gene022810.t1 | AT3G58250 | 24.806 | 258 | 162 | 4 | 21 | 277 | 10 | 236 | 1.30e-14 | 73.9 |
MS.gene022810.t1 | AT3G58370 | 33.333 | 159 | 99 | 4 | 14 | 169 | 2 | 156 | 8.78e-14 | 71.2 |
MS.gene022810.t1 | AT3G58350 | 35.385 | 130 | 78 | 3 | 21 | 147 | 8 | 134 | 9.84e-14 | 71.2 |
MS.gene022810.t1 | AT3G58350 | 35.385 | 130 | 78 | 3 | 21 | 147 | 8 | 134 | 9.84e-14 | 71.2 |
MS.gene022810.t1 | AT3G58210 | 28.205 | 156 | 107 | 3 | 20 | 174 | 7 | 158 | 3.00e-13 | 70.1 |
MS.gene022810.t1 | AT3G58200 | 31.356 | 118 | 77 | 2 | 20 | 136 | 7 | 121 | 1.48e-12 | 67.8 |
MS.gene022810.t1 | AT2G25320 | 25.871 | 201 | 131 | 5 | 13 | 201 | 396 | 590 | 3.20e-12 | 68.2 |
MS.gene022810.t1 | AT2G25320 | 25.871 | 201 | 131 | 5 | 13 | 201 | 397 | 591 | 3.23e-12 | 68.2 |
MS.gene022810.t1 | AT2G25320 | 25.871 | 201 | 131 | 5 | 13 | 201 | 397 | 591 | 5.86e-12 | 67.4 |
MS.gene022810.t1 | AT2G01790 | 30.822 | 146 | 98 | 3 | 24 | 168 | 11 | 154 | 1.57e-11 | 64.3 |
Find 61 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAAGAAAGTAGTTATTAT+TGG | 0.174067 | 8.1:-85004568 | MS.gene022810:CDS |
CAAGTTCTTCCCATAAAATT+TGG | 0.190981 | 8.1:+85004120 | None:intergenic |
GGGTTGTTCTTGCTCCCTTT+TGG | 0.270422 | 8.1:+85005010 | None:intergenic |
AGGATTTGCGGAGAGGGATT+TGG | 0.274259 | 8.1:-85003931 | MS.gene022810:CDS |
AAACTTTCTGAGTATGTCTT+AGG | 0.276079 | 8.1:+85005161 | None:intergenic |
GAGATTTCTTTGACAGGAAT+TGG | 0.299184 | 8.1:+85004380 | None:intergenic |
GAGTTGATTGAAGCAGAAAA+AGG | 0.304634 | 8.1:-85003951 | MS.gene022810:CDS |
TGTCAACAAGTTTGTACATT+TGG | 0.308703 | 8.1:-85004543 | MS.gene022810:CDS |
ACATATCTGCTCCACCCTTT+AGG | 0.335250 | 8.1:+85004935 | None:intergenic |
TTGGATGCTAAACTAGGATA+TGG | 0.370332 | 8.1:-85003912 | MS.gene022810:CDS |
GTGAATTGATCGGTCGTCCC+TGG | 0.385107 | 8.1:+85005215 | None:intergenic |
GTTCCCTTACAGAAATAATC+CGG | 0.402417 | 8.1:+85004462 | None:intergenic |
TGGATGCACTTCGCAACTCT+TGG | 0.416130 | 8.1:-85004523 | MS.gene022810:CDS |
GTATGTCTTAGGATCACATT+TGG | 0.423645 | 8.1:+85005172 | None:intergenic |
GAGTACGCTTTCTCTTCGTC+TGG | 0.426166 | 8.1:+85004243 | None:intergenic |
TGAATTGATCGGTCGTCCCT+GGG | 0.427968 | 8.1:+85005216 | None:intergenic |
CTATCAATTTATTTGAATGT+TGG | 0.434862 | 8.1:-85004974 | MS.gene022810:CDS |
TGACAATTTAGTCGATTTCA+AGG | 0.437357 | 8.1:-85004342 | MS.gene022810:CDS |
CCAACCATGGATAGCCTTTG+AGG | 0.444721 | 8.1:+85005135 | None:intergenic |
TGCTTGAGGAAGTATGTTCA+TGG | 0.445188 | 8.1:-85004286 | MS.gene022810:CDS |
TTAGTCGATTTCAAGGGTAT+AGG | 0.451950 | 8.1:-85004335 | MS.gene022810:CDS |
CGGATTGTTATGAATCCAAA+AGG | 0.453634 | 8.1:-85005025 | MS.gene022810:CDS |
AAGCCCGGATTATTTCTGTA+AGG | 0.456756 | 8.1:-85004466 | MS.gene022810:CDS |
TTGACAGGAATTGGTTGTGC+TGG | 0.461911 | 8.1:+85004389 | None:intergenic |
ATTGATAGTGACAAGTAACC+TGG | 0.479645 | 8.1:+85004989 | None:intergenic |
AGAGAGAAGCAAAGGTGAAA+AGG | 0.480791 | 8.1:-85004025 | MS.gene022810:CDS |
GCTGAAGAGATTTCTTTGAC+AGG | 0.481261 | 8.1:+85004374 | None:intergenic |
TACTCATAGATTTACAGAAT+GGG | 0.503133 | 8.1:-85004225 | MS.gene022810:CDS |
CTCATTGCGGATAAATAAGA+AGG | 0.509899 | 8.1:+85004065 | None:intergenic |
CAGATATGTAAATCTTGAGT+TGG | 0.510067 | 8.1:-85004921 | MS.gene022810:CDS |
AGCCCGGATTATTTCTGTAA+GGG | 0.517386 | 8.1:-85004465 | MS.gene022810:CDS |
TGGGAAGAACTTGAGACAGT+TGG | 0.519283 | 8.1:-85004110 | MS.gene022810:CDS |
AGGGATTTGGATGCTAAACT+AGG | 0.526422 | 8.1:-85003918 | MS.gene022810:CDS |
TTCCCTTACAGAAATAATCC+GGG | 0.529811 | 8.1:+85004463 | None:intergenic |
ATTATTTCTGTAAGGGAACA+AGG | 0.538894 | 8.1:-85004458 | MS.gene022810:CDS |
TCAGAAAGTTTCTTCCTCAA+AGG | 0.539392 | 8.1:-85005149 | MS.gene022810:CDS |
CACTTCGCAACTCTTGGAGT+GGG | 0.545439 | 8.1:-85004517 | MS.gene022810:CDS |
ATACATGTATTATTAAAGCC+CGG | 0.545442 | 8.1:-85004481 | MS.gene022810:CDS |
TCTTCCTCAAAGGCTATCCA+TGG | 0.545732 | 8.1:-85005139 | MS.gene022810:intron |
GCATTGCTAACAATTGCAAA+AGG | 0.549086 | 8.1:-85004878 | MS.gene022810:intron |
TCTGTAAGGGAACAAGGGTA+TGG | 0.550428 | 8.1:-85004452 | MS.gene022810:CDS |
GAATGGGCATTCACAGCATT+AGG | 0.550815 | 8.1:-85004209 | MS.gene022810:CDS |
CTTCTTATTTATCCGCAATG+AGG | 0.558760 | 8.1:-85004064 | MS.gene022810:CDS |
GCAATTGAGAAGAAATCCCC+AGG | 0.581773 | 8.1:-85005233 | MS.gene022810:CDS |
GACAATTTAGTCGATTTCAA+GGG | 0.584262 | 8.1:-85004341 | MS.gene022810:CDS |
GTACTCATAGATTTACAGAA+TGG | 0.591630 | 8.1:-85004226 | MS.gene022810:CDS |
AATCGTCCATGTGAATTGAT+CGG | 0.597888 | 8.1:+85005205 | None:intergenic |
GTCTGGTTGTCAACAAGTGA+TGG | 0.601061 | 8.1:+85004260 | None:intergenic |
TTATGTCCAGAGAGAAGCAA+AGG | 0.607002 | 8.1:-85004033 | MS.gene022810:CDS |
CAATCAAGAAGTTAGTGCGG+TGG | 0.608021 | 8.1:-85004420 | MS.gene022810:CDS |
GCACTTCGCAACTCTTGGAG+TGG | 0.609049 | 8.1:-85004518 | MS.gene022810:CDS |
TGTTTAGAAAATATAGAACT+CGG | 0.609711 | 8.1:+85004186 | None:intergenic |
GAACATACTTCCTCAAGCAA+CGG | 0.629733 | 8.1:+85004290 | None:intergenic |
GGATTGTTATGAATCCAAAA+GGG | 0.632540 | 8.1:-85005024 | MS.gene022810:CDS |
TTGATAGTGACAAGTAACCT+GGG | 0.638803 | 8.1:+85004990 | None:intergenic |
GGACGACCGATCAATTCACA+TGG | 0.663616 | 8.1:-85005211 | MS.gene022810:CDS |
TTATTTCTGTAAGGGAACAA+GGG | 0.671435 | 8.1:-85004457 | MS.gene022810:CDS |
AAAGGGAGCAAGAACAACCC+AGG | 0.672868 | 8.1:-85005007 | MS.gene022810:CDS |
GAATTGATCGGTCGTCCCTG+GGG | 0.691397 | 8.1:+85005217 | None:intergenic |
AAACAATCAAGAAGTTAGTG+CGG | 0.706062 | 8.1:-85004423 | MS.gene022810:CDS |
CAATTGAGAAGAAATCCCCA+GGG | 0.717237 | 8.1:-85005232 | MS.gene022810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAAAGAATAGTTTATATA+AGG | + | chr8.1:85004528-85004547 | None:intergenic | 15.0% |
!! | GTAAAGAATAGTTTATATAA+GGG | + | chr8.1:85004527-85004546 | None:intergenic | 15.0% |
!! | TTATATAAGGGATAAAAATA+TGG | + | chr8.1:85004515-85004534 | None:intergenic | 15.0% |
!!! | AACAATTAGTTTTACATTTT+TGG | - | chr8.1:85004320-85004339 | MS.gene022810:CDS | 15.0% |
!!! | ATATTTTCTAAACACTAAAA+AGG | - | chr8.1:85004985-85005004 | MS.gene022810:CDS | 15.0% |
!! | AAAATCAATAACAGATGTTA+TGG | + | chr8.1:85004355-85004374 | None:intergenic | 20.0% |
!! | CTATCAATTTATTTGAATGT+TGG | - | chr8.1:85004188-85004207 | MS.gene022810:CDS | 20.0% |
!! | TCAAAGAAAGTAGTTATTAT+TGG | - | chr8.1:85004594-85004613 | MS.gene022810:intron | 20.0% |
!! | TGTTTAGAAAATATAGAACT+CGG | + | chr8.1:85004979-85004998 | None:intergenic | 20.0% |
!!! | ACAATTTTAATCTTCCTAAA+GGG | - | chr8.1:85004213-85004232 | MS.gene022810:CDS | 20.0% |
!!! | TAATCATCTCCAAATTTTAT+GGG | - | chr8.1:85005033-85005052 | MS.gene022810:intron | 20.0% |
!!! | TGTTTTCGATATTTTTTTTC+AGG | - | chr8.1:85004114-85004133 | MS.gene022810:CDS | 20.0% |
! | ATACATGTATTATTAAAGCC+CGG | - | chr8.1:85004681-85004700 | MS.gene022810:intron | 25.0% |
! | TACTCATAGATTTACAGAAT+GGG | - | chr8.1:85004937-85004956 | MS.gene022810:CDS | 25.0% |
!! | ACTTTCCTCTAATTTTTGAT+TGG | - | chr8.1:85004460-85004479 | MS.gene022810:CDS | 25.0% |
!! | GTAATCATCTCCAAATTTTA+TGG | - | chr8.1:85005032-85005051 | MS.gene022810:intron | 25.0% |
!! | GTTTTCTATCATCTACAATA+TGG | - | chr8.1:85004420-85004439 | MS.gene022810:CDS | 25.0% |
!!! | GACAATTTTAATCTTCCTAA+AGG | - | chr8.1:85004212-85004231 | MS.gene022810:CDS | 25.0% |
!!! | TTTCGATATTTTTTTTCAGG+CGG | - | chr8.1:85004117-85004136 | MS.gene022810:CDS | 25.0% |
AAACAATCAAGAAGTTAGTG+CGG | - | chr8.1:85004739-85004758 | MS.gene022810:intron | 30.0% | |
AAACTTTCTGAGTATGTCTT+AGG | + | chr8.1:85004004-85004023 | None:intergenic | 30.0% | |
CAAGTTCTTCCCATAAAATT+TGG | + | chr8.1:85005045-85005064 | None:intergenic | 30.0% | |
CACATCCAATCAAAAATTAG+AGG | + | chr8.1:85004468-85004487 | None:intergenic | 30.0% | |
CAGATATGTAAATCTTGAGT+TGG | - | chr8.1:85004241-85004260 | MS.gene022810:CDS | 30.0% | |
GATATGCGTATGTAGTAAAT+TGG | + | chr8.1:85004067-85004086 | None:intergenic | 30.0% | |
GGATTGTTATGAATCCAAAA+GGG | - | chr8.1:85004138-85004157 | MS.gene022810:CDS | 30.0% | |
GTACTCATAGATTTACAGAA+TGG | - | chr8.1:85004936-85004955 | MS.gene022810:CDS | 30.0% | |
TAGATGATAGAAAACCCATA+TGG | + | chr8.1:85004415-85004434 | None:intergenic | 30.0% | |
TGTCAACAAGTTTGTACATT+TGG | - | chr8.1:85004619-85004638 | MS.gene022810:intron | 30.0% | |
! | ATAATTTTTCGTCCTCATTG+CGG | + | chr8.1:85005113-85005132 | None:intergenic | 30.0% |
! | GACAATTTAGTCGATTTCAA+GGG | - | chr8.1:85004821-85004840 | MS.gene022810:intron | 30.0% |
! | TGACAATTTAGTCGATTTCA+AGG | - | chr8.1:85004820-85004839 | MS.gene022810:intron | 30.0% |
!! | ATTATTTCTGTAAGGGAACA+AGG | - | chr8.1:85004704-85004723 | MS.gene022810:intron | 30.0% |
!! | ATTTTAATCTTCCTAAAGGG+TGG | - | chr8.1:85004216-85004235 | MS.gene022810:CDS | 30.0% |
!! | TTATTTCTGTAAGGGAACAA+GGG | - | chr8.1:85004705-85004724 | MS.gene022810:intron | 30.0% |
!!! | CAGTTGGTTTTGATTTATCT+TGG | - | chr8.1:85005068-85005087 | MS.gene022810:intron | 30.0% |
AATCGTCCATGTGAATTGAT+CGG | + | chr8.1:85003960-85003979 | None:intergenic | 35.0% | |
CGGATTGTTATGAATCCAAA+AGG | - | chr8.1:85004137-85004156 | MS.gene022810:CDS | 35.0% | |
CTCATTGCGGATAAATAAGA+AGG | + | chr8.1:85005100-85005119 | None:intergenic | 35.0% | |
GAGATTTCTTTGACAGGAAT+TGG | + | chr8.1:85004785-85004804 | None:intergenic | 35.0% | |
GCATTGCTAACAATTGCAAA+AGG | - | chr8.1:85004284-85004303 | MS.gene022810:CDS | 35.0% | |
GTATGTCTTAGGATCACATT+TGG | + | chr8.1:85003993-85004012 | None:intergenic | 35.0% | |
GTTCCCTTACAGAAATAATC+CGG | + | chr8.1:85004703-85004722 | None:intergenic | 35.0% | |
TCAGAAAGTTTCTTCCTCAA+AGG | - | chr8.1:85004013-85004032 | MS.gene022810:CDS | 35.0% | |
TGAAGCAGAAAAAGGATTTG+CGG | - | chr8.1:85005219-85005238 | MS.gene022810:CDS | 35.0% | |
TTCCCTTACAGAAATAATCC+GGG | + | chr8.1:85004702-85004721 | None:intergenic | 35.0% | |
TTGGATGCTAAACTAGGATA+TGG | - | chr8.1:85005250-85005269 | MS.gene022810:CDS | 35.0% | |
! | AAATTTTGTTCCGTTGCTTG+AGG | - | chr8.1:85004862-85004881 | MS.gene022810:intron | 35.0% |
! | CTTCTTATTTATCCGCAATG+AGG | - | chr8.1:85005098-85005117 | MS.gene022810:intron | 35.0% |
! | GAGTTGATTGAAGCAGAAAA+AGG | - | chr8.1:85005211-85005230 | MS.gene022810:CDS | 35.0% |
! | TTAGTCGATTTCAAGGGTAT+AGG | - | chr8.1:85004827-85004846 | MS.gene022810:intron | 35.0% |
!! | ATTGATAGTGACAAGTAACC+TGG | + | chr8.1:85004176-85004195 | None:intergenic | 35.0% |
!! | TTGATAGTGACAAGTAACCT+GGG | + | chr8.1:85004175-85004194 | None:intergenic | 35.0% |
AGAAAAAGGATTTGCGGAGA+GGG | - | chr8.1:85005225-85005244 | MS.gene022810:CDS | 40.0% | |
AGAGAGAAGCAAAGGTGAAA+AGG | - | chr8.1:85005137-85005156 | MS.gene022810:intron | 40.0% | |
AGGGATTTGGATGCTAAACT+AGG | - | chr8.1:85005244-85005263 | MS.gene022810:CDS | 40.0% | |
ATTTACTTGAGCACCAACCA+TGG | + | chr8.1:85004043-85004062 | None:intergenic | 40.0% | |
CAATTGAGAAGAAATCCCCA+GGG | - | chr8.1:85003930-85003949 | MS.gene022810:CDS | 40.0% | |
GAACATACTTCCTCAAGCAA+CGG | + | chr8.1:85004875-85004894 | None:intergenic | 40.0% | |
GCAAGTTTGCAACACCATAT+GGG | - | chr8.1:85004398-85004417 | MS.gene022810:CDS | 40.0% | |
GCTGAAGAGATTTCTTTGAC+AGG | + | chr8.1:85004791-85004810 | None:intergenic | 40.0% | |
TGCAAGTTTGCAACACCATA+TGG | - | chr8.1:85004397-85004416 | MS.gene022810:CDS | 40.0% | |
TTATGTCCAGAGAGAAGCAA+AGG | - | chr8.1:85005129-85005148 | MS.gene022810:intron | 40.0% | |
! | TGCTTGAGGAAGTATGTTCA+TGG | - | chr8.1:85004876-85004895 | MS.gene022810:intron | 40.0% |
! | TTTTCACCTTTGCTTCTCTC+TGG | + | chr8.1:85005138-85005157 | None:intergenic | 40.0% |
!! | AAGCCCGGATTATTTCTGTA+AGG | - | chr8.1:85004696-85004715 | MS.gene022810:intron | 40.0% |
!! | AGCCCGGATTATTTCTGTAA+GGG | - | chr8.1:85004697-85004716 | MS.gene022810:intron | 40.0% |
ACATATCTGCTCCACCCTTT+AGG | + | chr8.1:85004230-85004249 | None:intergenic | 45.0% | |
CAATCAAGAAGTTAGTGCGG+TGG | - | chr8.1:85004742-85004761 | MS.gene022810:intron | 45.0% | |
CAGAAAAAGGATTTGCGGAG+AGG | - | chr8.1:85005224-85005243 | MS.gene022810:CDS | 45.0% | |
GAATGGGCATTCACAGCATT+AGG | - | chr8.1:85004953-85004972 | MS.gene022810:CDS | 45.0% | |
GCAATTGAGAAGAAATCCCC+AGG | - | chr8.1:85003929-85003948 | MS.gene022810:CDS | 45.0% | |
GTCTGGTTGTCAACAAGTGA+TGG | + | chr8.1:85004905-85004924 | None:intergenic | 45.0% | |
TCTGTAAGGGAACAAGGGTA+TGG | - | chr8.1:85004710-85004729 | MS.gene022810:intron | 45.0% | |
TCTTCCTCAAAGGCTATCCA+TGG | - | chr8.1:85004023-85004042 | MS.gene022810:CDS | 45.0% | |
TGGGAAGAACTTGAGACAGT+TGG | - | chr8.1:85005052-85005071 | MS.gene022810:intron | 45.0% | |
TTGACAGGAATTGGTTGTGC+TGG | + | chr8.1:85004776-85004795 | None:intergenic | 45.0% | |
AAAGGGAGCAAGAACAACCC+AGG | - | chr8.1:85004155-85004174 | MS.gene022810:CDS | 50.0% | |
AGGATTTGCGGAGAGGGATT+TGG | - | chr8.1:85005231-85005250 | MS.gene022810:CDS | 50.0% | |
CACTTCGCAACTCTTGGAGT+GGG | - | chr8.1:85004645-85004664 | MS.gene022810:intron | 50.0% | |
CCAACCATGGATAGCCTTTG+AGG | + | chr8.1:85004030-85004049 | None:intergenic | 50.0% | |
CCTCAAAGGCTATCCATGGT+TGG | - | chr8.1:85004027-85004046 | MS.gene022810:CDS | 50.0% | |
GAGTACGCTTTCTCTTCGTC+TGG | + | chr8.1:85004922-85004941 | None:intergenic | 50.0% | |
GGACGACCGATCAATTCACA+TGG | - | chr8.1:85003951-85003970 | MS.gene022810:CDS | 50.0% | |
TGAATTGATCGGTCGTCCCT+GGG | + | chr8.1:85003949-85003968 | None:intergenic | 50.0% | |
TGGATGCACTTCGCAACTCT+TGG | - | chr8.1:85004639-85004658 | MS.gene022810:intron | 50.0% | |
! | GGGTTGTTCTTGCTCCCTTT+TGG | + | chr8.1:85004155-85004174 | None:intergenic | 50.0% |
GAATTGATCGGTCGTCCCTG+GGG | + | chr8.1:85003948-85003967 | None:intergenic | 55.0% | |
GCACTTCGCAACTCTTGGAG+TGG | - | chr8.1:85004644-85004663 | MS.gene022810:intron | 55.0% | |
GTGAATTGATCGGTCGTCCC+TGG | + | chr8.1:85003950-85003969 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 85003902 | 85005282 | 85003902 | ID=MS.gene022810 |
chr8.1 | mRNA | 85003902 | 85005282 | 85003902 | ID=MS.gene022810.t1;Parent=MS.gene022810 |
chr8.1 | exon | 85005140 | 85005282 | 85005140 | ID=MS.gene022810.t1.exon1;Parent=MS.gene022810.t1 |
chr8.1 | CDS | 85005140 | 85005282 | 85005140 | ID=cds.MS.gene022810.t1;Parent=MS.gene022810.t1 |
chr8.1 | exon | 85004879 | 85005048 | 85004879 | ID=MS.gene022810.t1.exon2;Parent=MS.gene022810.t1 |
chr8.1 | CDS | 85004879 | 85005048 | 85004879 | ID=cds.MS.gene022810.t1;Parent=MS.gene022810.t1 |
chr8.1 | exon | 85003902 | 85004605 | 85003902 | ID=MS.gene022810.t1.exon3;Parent=MS.gene022810.t1 |
chr8.1 | CDS | 85003902 | 85004605 | 85003902 | ID=cds.MS.gene022810.t1;Parent=MS.gene022810.t1 |
Gene Sequence |
Protein sequence |