Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022811.t1 | XP_003626895.2 | 90.2 | 369 | 18 | 2 | 1 | 364 | 1 | 356 | 5.70E-175 | 623.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022811.t1 | Q9FPT1 | 34.1 | 170 | 95 | 4 | 27 | 183 | 56 | 221 | 1.4e-20 | 102.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022811.t1 | G7LEE7 | 90.2 | 369 | 18 | 2 | 1 | 364 | 1 | 356 | 4.1e-175 | 623.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022811.t1 | MTR_8g011730 | 89.431 | 369 | 21 | 2 | 1 | 364 | 1 | 356 | 0.0 | 672 |
MS.gene022811.t1 | MTR_7g107200 | 34.606 | 393 | 175 | 10 | 25 | 362 | 11 | 376 | 4.06e-64 | 209 |
MS.gene022811.t1 | MTR_7g107160 | 32.133 | 361 | 177 | 11 | 25 | 361 | 128 | 444 | 5.33e-45 | 160 |
MS.gene022811.t1 | MTR_7g107170 | 40.351 | 171 | 88 | 2 | 205 | 363 | 98 | 266 | 1.31e-34 | 128 |
MS.gene022811.t1 | MTR_8g011750 | 53.191 | 141 | 27 | 2 | 225 | 363 | 80 | 183 | 3.63e-28 | 108 |
MS.gene022811.t1 | MTR_1g042160 | 41.096 | 146 | 82 | 3 | 25 | 169 | 11 | 153 | 2.07e-27 | 110 |
MS.gene022811.t1 | MTR_1g042160 | 35.593 | 118 | 64 | 1 | 255 | 360 | 191 | 308 | 3.77e-18 | 84.3 |
MS.gene022811.t1 | MTR_2g034780 | 42.424 | 132 | 71 | 2 | 218 | 349 | 117 | 243 | 1.09e-26 | 107 |
MS.gene022811.t1 | MTR_3g079840 | 33.854 | 192 | 107 | 7 | 5 | 183 | 37 | 221 | 4.65e-24 | 104 |
MS.gene022811.t1 | MTR_3g079840 | 33.854 | 192 | 107 | 7 | 5 | 183 | 38 | 222 | 4.92e-24 | 104 |
MS.gene022811.t1 | MTR_1g041240 | 35.294 | 153 | 92 | 3 | 1 | 153 | 34 | 179 | 2.21e-23 | 102 |
MS.gene022811.t1 | MTR_1g041240 | 35.294 | 153 | 92 | 3 | 1 | 153 | 36 | 181 | 2.36e-23 | 102 |
MS.gene022811.t1 | MTR_5g086700 | 33.854 | 192 | 105 | 7 | 5 | 183 | 44 | 226 | 5.44e-23 | 101 |
MS.gene022811.t1 | MTR_5g086700 | 33.854 | 192 | 105 | 7 | 5 | 183 | 44 | 226 | 5.96e-23 | 100 |
MS.gene022811.t1 | MTR_1g041240 | 36.364 | 143 | 84 | 3 | 11 | 153 | 45 | 180 | 6.36e-23 | 100 |
MS.gene022811.t1 | MTR_5g091450 | 29.825 | 171 | 103 | 6 | 4 | 167 | 17 | 177 | 4.02e-20 | 92.4 |
MS.gene022811.t1 | MTR_5g091180 | 27.586 | 174 | 112 | 5 | 6 | 171 | 28 | 195 | 4.01e-16 | 80.1 |
MS.gene022811.t1 | MTR_5g091550 | 28.235 | 170 | 107 | 6 | 14 | 172 | 3 | 168 | 1.12e-13 | 72.4 |
MS.gene022811.t1 | MTR_5g091550 | 28.472 | 144 | 95 | 4 | 14 | 153 | 3 | 142 | 2.23e-13 | 71.6 |
MS.gene022811.t1 | MTR_8g006190 | 29.915 | 117 | 79 | 2 | 44 | 157 | 10 | 126 | 3.82e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022811.t1 | AT5G06600 | 34.409 | 186 | 102 | 7 | 11 | 183 | 42 | 220 | 1.57e-23 | 102 |
MS.gene022811.t1 | AT5G06600 | 34.409 | 186 | 102 | 7 | 11 | 183 | 43 | 221 | 1.57e-23 | 102 |
MS.gene022811.t1 | AT5G06600 | 34.409 | 186 | 102 | 7 | 11 | 183 | 43 | 221 | 1.71e-23 | 102 |
MS.gene022811.t1 | AT3G11910 | 35.294 | 170 | 93 | 5 | 27 | 183 | 55 | 220 | 1.59e-22 | 99.8 |
MS.gene022811.t1 | AT3G11910 | 35.294 | 170 | 93 | 5 | 27 | 183 | 55 | 220 | 1.59e-22 | 99.8 |
MS.gene022811.t1 | AT3G11910 | 35.294 | 170 | 93 | 5 | 27 | 183 | 54 | 219 | 1.63e-22 | 99.8 |
MS.gene022811.t1 | AT3G11910 | 35.294 | 170 | 93 | 5 | 27 | 183 | 54 | 219 | 1.63e-22 | 99.8 |
MS.gene022811.t1 | AT3G58260 | 23.123 | 333 | 198 | 11 | 28 | 351 | 9 | 292 | 9.01e-15 | 74.7 |
MS.gene022811.t1 | AT3G58410 | 33.333 | 156 | 90 | 7 | 26 | 179 | 7 | 150 | 3.39e-14 | 73.2 |
MS.gene022811.t1 | AT3G58270 | 35.294 | 119 | 72 | 2 | 27 | 144 | 8 | 122 | 4.70e-14 | 72.8 |
MS.gene022811.t1 | AT3G58270 | 35.294 | 119 | 72 | 2 | 27 | 144 | 8 | 122 | 4.70e-14 | 72.8 |
MS.gene022811.t1 | AT3G58270 | 35.294 | 119 | 72 | 2 | 27 | 144 | 8 | 122 | 4.70e-14 | 72.8 |
MS.gene022811.t1 | AT3G58200 | 32.479 | 117 | 75 | 2 | 27 | 142 | 8 | 121 | 3.80e-12 | 67.0 |
MS.gene022811.t1 | AT3G58340 | 31.783 | 129 | 83 | 3 | 26 | 153 | 7 | 131 | 1.01e-11 | 65.5 |
MS.gene022811.t1 | AT3G58340 | 31.783 | 129 | 83 | 3 | 26 | 153 | 7 | 131 | 1.36e-11 | 65.5 |
MS.gene022811.t1 | AT3G58210 | 31.250 | 128 | 85 | 2 | 27 | 153 | 8 | 133 | 2.37e-11 | 64.7 |
Find 69 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAATTGCAGATTCAAAATA+TGG | 0.175455 | 8.1:+84998534 | None:intergenic |
GTGTCAATTTGGTCGATTTC+AGG | 0.185244 | 8.1:-84998878 | MS.gene022811:CDS |
CAAGTTCTTCCCATAAAATT+TGG | 0.190981 | 8.1:+84998589 | None:intergenic |
TGTCAATTTGTGTGTCAATT+TGG | 0.313273 | 8.1:-84998889 | MS.gene022811:CDS |
GAGTTGTTCTCGTTCCCTTT+TGG | 0.329267 | 8.1:+84999551 | None:intergenic |
AGAATTTGTAGAGAGGGATT+TGG | 0.337842 | 8.1:-84998400 | MS.gene022811:CDS |
ACCAGCGCAACCAATCTCTT+TGG | 0.367357 | 8.1:-84998922 | MS.gene022811:CDS |
TGTCGACAAGTTCATACATT+TGG | 0.371497 | 8.1:-84999072 | MS.gene022811:CDS |
GAGTATGCTTTCTCTTCCTC+TGG | 0.401027 | 8.1:+84998712 | None:intergenic |
TCAATGCAAGTAATTATTGC+TGG | 0.402960 | 8.1:-84999097 | MS.gene022811:CDS |
TGTCAATTTGGTCGATTTCA+GGG | 0.420435 | 8.1:-84998877 | MS.gene022811:CDS |
TAACTTTGTTCCACTGATAG+AGG | 0.432584 | 8.1:-84998769 | MS.gene022811:CDS |
GTCTCTATCAGAAACTGAAC+AGG | 0.444956 | 8.1:-84999123 | MS.gene022811:intron |
TGCTAGAGGAAGCATGTTCA+TGG | 0.445186 | 8.1:-84998821 | MS.gene022811:CDS |
CGGATTGTTATGAATCCAAA+AGG | 0.446814 | 8.1:-84999566 | MS.gene022811:CDS |
TACTCGTAGGTTTACAGAAT+GGG | 0.449436 | 8.1:-84998694 | MS.gene022811:CDS |
TTGGTCGATTTCAGGGGCTT+AGG | 0.454796 | 8.1:-84998870 | MS.gene022811:CDS |
GAATGGGCATTAACAGCATT+AGG | 0.460962 | 8.1:-84998678 | MS.gene022811:CDS |
GACAATTGTGAGCAAGGCAT+TGG | 0.461179 | 8.1:+84999424 | None:intergenic |
TGATAGAGGAAGCATGTTCA+TGG | 0.466066 | 8.1:-84998755 | MS.gene022811:CDS |
TTCACAATAAACGCCTTCCA+TGG | 0.468726 | 8.1:+84999035 | None:intergenic |
CACGAGGGCACCAAAGAGAT+TGG | 0.478849 | 8.1:+84998912 | None:intergenic |
AAGATATGTAAATCTTGAGT+TGG | 0.500018 | 8.1:-84999462 | MS.gene022811:CDS |
AGAGATATGCAAATGTGAAA+AGG | 0.508744 | 8.1:-84998494 | MS.gene022811:CDS |
GTGAATTGCTCAATCGTCCA+TGG | 0.514031 | 8.1:+84999768 | None:intergenic |
ACCAAAGAGATTGGTTGCGC+TGG | 0.514421 | 8.1:+84998921 | None:intergenic |
GCTTTACCCTCAATCGTCCA+TGG | 0.517777 | 8.1:+84999807 | None:intergenic |
TGGTCCCCATGGACGATTGA+GGG | 0.518534 | 8.1:-84999813 | MS.gene022811:CDS |
TAAACGCCTTCCATGGGTTG+TGG | 0.519110 | 8.1:+84999042 | None:intergenic |
TGGGAAGAACTTGAGACAGT+TGG | 0.519283 | 8.1:-84998579 | MS.gene022811:CDS |
ATACTTGTATTATTAAAGCT+CGG | 0.520080 | 8.1:-84999010 | MS.gene022811:CDS |
AGGGATTTGGATGCTAAACT+AGG | 0.527986 | 8.1:-84998387 | MS.gene022811:CDS |
ATTATTTCTGTCAGTGAACA+CGG | 0.528503 | 8.1:-84998987 | MS.gene022811:CDS |
CTTGTCATTATCAATTCTAA+CGG | 0.528540 | 8.1:-84999522 | MS.gene022811:CDS |
GTCTACTTTGCTTAAGAGTG+AGG | 0.536472 | 8.1:+84998794 | None:intergenic |
GTCAATTTGGTCGATTTCAG+GGG | 0.536907 | 8.1:-84998876 | MS.gene022811:CDS |
TTGGATGCTAAACTAGGCTA+TGG | 0.541199 | 8.1:-84998381 | MS.gene022811:CDS |
CTTTACCCTCAATCGTCCAT+GGG | 0.546895 | 8.1:+84999808 | None:intergenic |
TCTACTTTGCTTAAGAGTGA+GGG | 0.546949 | 8.1:+84998795 | None:intergenic |
TGAATTGCTCAATCGTCCAT+GGG | 0.546953 | 8.1:+84999769 | None:intergenic |
TCACAATAAACGCCTTCCAT+GGG | 0.562456 | 8.1:+84999036 | None:intergenic |
ATATATCTCCATGGTCCCCA+TGG | 0.562482 | 8.1:-84999824 | MS.gene022811:CDS |
TAATCAAGAAGTTAGCAAGA+TGG | 0.566875 | 8.1:-84998949 | MS.gene022811:CDS |
ATGGTCCCCATGGACGATTG+AGG | 0.569898 | 8.1:-84999814 | MS.gene022811:CDS |
ATACTCGTAGGTTTACAGAA+TGG | 0.570739 | 8.1:-84998695 | MS.gene022811:CDS |
AAAATTTGTTCCGCTGCTAG+AGG | 0.575127 | 8.1:-84998835 | MS.gene022811:CDS |
ATGTGATTCTCAGATGTACT+CGG | 0.577748 | 8.1:-84999721 | MS.gene022811:CDS |
TCAATCGTCCATGGGGACCA+TGG | 0.582787 | 8.1:+84999816 | None:intergenic |
ACCTTCGACAATTGTGAGCA+AGG | 0.587693 | 8.1:+84999418 | None:intergenic |
ATGCAAATGTGAAAAGGCTG+AGG | 0.588552 | 8.1:-84998488 | MS.gene022811:CDS |
AAAGGGAACGAGAACAACTC+TGG | 0.589691 | 8.1:-84999548 | MS.gene022811:CDS |
TGGATGAACTCCACAACCCA+TGG | 0.592095 | 8.1:-84999052 | MS.gene022811:CDS |
GGAAGAGAAAGCATACTCGT+AGG | 0.598915 | 8.1:-84998707 | MS.gene022811:CDS |
TTCAAAATATGGCTTCAACC+AGG | 0.606260 | 8.1:+84998545 | None:intergenic |
GAACATGCTTCCTCTATCAG+TGG | 0.613098 | 8.1:+84998759 | None:intergenic |
GCCTTGCTCACAATTGTCGA+AGG | 0.623125 | 8.1:-84999419 | MS.gene022811:intron |
AGATGGAGAATATATCTCCA+TGG | 0.624631 | 8.1:-84999833 | MS.gene022811:CDS |
TGAACTCCACAACCCATGGA+AGG | 0.624854 | 8.1:-84999048 | MS.gene022811:CDS |
GGATTGTTATGAATCCAAAA+GGG | 0.625720 | 8.1:-84999565 | MS.gene022811:CDS |
TTATTTCTGTCAGTGAACAC+GGG | 0.626135 | 8.1:-84998986 | MS.gene022811:CDS |
GAACATGCTTCCTCTAGCAG+CGG | 0.657845 | 8.1:+84998825 | None:intergenic |
AAGGCTGAGGAAGACTGTAG+AGG | 0.657859 | 8.1:-84998475 | MS.gene022811:CDS |
GCTCACATGTTGACAACCAG+AGG | 0.663472 | 8.1:-84998728 | MS.gene022811:CDS |
GGACGATTGAGCAATTCACA+TGG | 0.668862 | 8.1:-84999764 | MS.gene022811:CDS |
CATTTGAGAATATATCCCCA+TGG | 0.688425 | 8.1:-84999785 | MS.gene022811:CDS |
GACACACAAATTGACACACG+AGG | 0.701854 | 8.1:+84998896 | None:intergenic |
TTTACCCTCAATCGTCCATG+GGG | 0.712378 | 8.1:+84999809 | None:intergenic |
ACACACAAATTGACACACGA+GGG | 0.716725 | 8.1:+84998897 | None:intergenic |
GAATTGCTCAATCGTCCATG+GGG | 0.717098 | 8.1:+84999770 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAGAACAACTTATATAAA+GGG | + | chr8.1:84999041-84999060 | None:intergenic | 15.0% |
!! | ATACTTGTATTATTAAAGCT+CGG | - | chr8.1:84999192-84999211 | MS.gene022811:intron | 20.0% |
!! | CAACTATTGATATAATTAAC+AGG | + | chr8.1:84998864-84998883 | None:intergenic | 20.0% |
!! | GTTAAGAACAACTTATATAA+AGG | + | chr8.1:84999042-84999061 | None:intergenic | 20.0% |
!! | TAAGAACAACTTATATAAAG+GGG | + | chr8.1:84999040-84999059 | None:intergenic | 20.0% |
!!! | ACAATTGCTTTTACATTTTT+TGG | - | chr8.1:84998820-84998839 | MS.gene022811:CDS | 20.0% |
!!! | ACATTTTCTAAACACTAAAA+GGG | - | chr8.1:84999556-84999575 | MS.gene022811:CDS | 20.0% |
!!! | AGTCTTGAAATTTTATTACT+TGG | - | chr8.1:84998932-84998951 | MS.gene022811:CDS | 20.0% |
!!! | CTTTTACATTTTTTGGTATA+AGG | - | chr8.1:84998827-84998846 | MS.gene022811:CDS | 20.0% |
!!! | TAATCATCTCCAAATTTTAT+GGG | - | chr8.1:84999604-84999623 | MS.gene022811:intron | 20.0% |
!!! | TACATTTTCTAAACACTAAA+AGG | - | chr8.1:84999555-84999574 | MS.gene022811:CDS | 20.0% |
!!! | TTATTGATTTTTCTAAAGAC+TGG | - | chr8.1:84998715-84998734 | MS.gene022811:CDS | 20.0% |
! | AAGATATGTAAATCTTGAGT+TGG | - | chr8.1:84998740-84998759 | MS.gene022811:CDS | 25.0% |
! | AGAAAAAGAATTTGTAGAGA+GGG | - | chr8.1:84999796-84999815 | MS.gene022811:CDS | 25.0% |
! | ATATAATTAACAGGATGTCA+TGG | + | chr8.1:84998855-84998874 | None:intergenic | 25.0% |
! | ATTATGTGTATGTAGTAAAC+TGG | + | chr8.1:84998554-84998573 | None:intergenic | 25.0% |
! | CTTGTCATTATCAATTCTAA+CGG | - | chr8.1:84998680-84998699 | MS.gene022811:CDS | 25.0% |
!! | GTAATCATCTCCAAATTTTA+TGG | - | chr8.1:84999603-84999622 | MS.gene022811:intron | 25.0% |
!!! | ATGAACTTTCCTTTATTTTG+TGG | - | chr8.1:84998968-84998987 | MS.gene022811:CDS | 25.0% |
AGAGATATGCAAATGTGAAA+AGG | - | chr8.1:84999708-84999727 | MS.gene022811:CDS | 30.0% | |
CAAGTTCTTCCCATAAAATT+TGG | + | chr8.1:84999616-84999635 | None:intergenic | 30.0% | |
CAGAAAAAGAATTTGTAGAG+AGG | - | chr8.1:84999795-84999814 | MS.gene022811:CDS | 30.0% | |
CCAATTGCAGATTCAAAATA+TGG | + | chr8.1:84999671-84999690 | None:intergenic | 30.0% | |
GGATTGTTATGAATCCAAAA+GGG | - | chr8.1:84998637-84998656 | MS.gene022811:CDS | 30.0% | |
TAATCAAGAAGTTAGCAAGA+TGG | - | chr8.1:84999253-84999272 | MS.gene022811:intron | 30.0% | |
TCAATGCAAGTAATTATTGC+TGG | - | chr8.1:84999105-84999124 | MS.gene022811:CDS | 30.0% | |
TGTCAATTTGTGTGTCAATT+TGG | - | chr8.1:84999313-84999332 | MS.gene022811:intron | 30.0% | |
!! | ATTATTTCTGTCAGTGAACA+CGG | - | chr8.1:84999215-84999234 | MS.gene022811:intron | 30.0% |
!! | CCATATTTTGAATCTGCAAT+TGG | - | chr8.1:84999668-84999687 | MS.gene022811:intron | 30.0% |
!!! | TGTTTTCGATGTTGTTTTTC+AGG | - | chr8.1:84998613-84998632 | MS.gene022811:CDS | 30.0% |
AGAATTTGTAGAGAGGGATT+TGG | - | chr8.1:84999802-84999821 | MS.gene022811:CDS | 35.0% | |
ATACTCGTAGGTTTACAGAA+TGG | - | chr8.1:84999507-84999526 | MS.gene022811:CDS | 35.0% | |
ATGTGATTCTCAGATGTACT+CGG | - | chr8.1:84998481-84998500 | MS.gene022811:CDS | 35.0% | |
CATTTGAGAATATATCCCCA+TGG | - | chr8.1:84998417-84998436 | MS.gene022811:CDS | 35.0% | |
CGGATTGTTATGAATCCAAA+AGG | - | chr8.1:84998636-84998655 | MS.gene022811:CDS | 35.0% | |
TAACTTTGTTCCACTGATAG+AGG | - | chr8.1:84999433-84999452 | MS.gene022811:CDS | 35.0% | |
TACTCGTAGGTTTACAGAAT+GGG | - | chr8.1:84999508-84999527 | MS.gene022811:CDS | 35.0% | |
TCTACTTTGCTTAAGAGTGA+GGG | + | chr8.1:84999410-84999429 | None:intergenic | 35.0% | |
TGCAACATCATATGAAGACT+TGG | - | chr8.1:84998898-84998917 | MS.gene022811:CDS | 35.0% | |
TGTCGACAAGTTCATACATT+TGG | - | chr8.1:84999130-84999149 | MS.gene022811:intron | 35.0% | |
TTCAAAATATGGCTTCAACC+AGG | + | chr8.1:84999660-84999679 | None:intergenic | 35.0% | |
! | TGTCAATTTGGTCGATTTCA+GGG | - | chr8.1:84999325-84999344 | MS.gene022811:intron | 35.0% |
!! | TTATTTCTGTCAGTGAACAC+GGG | - | chr8.1:84999216-84999235 | MS.gene022811:intron | 35.0% |
!!! | CAGTTGGTTTTGATTTATCC+TGG | - | chr8.1:84999639-84999658 | MS.gene022811:intron | 35.0% |
!!! | TTTCGATGTTGTTTTTCAGG+CGG | - | chr8.1:84998616-84998635 | MS.gene022811:CDS | 35.0% |
ACACACAAATTGACACACGA+GGG | + | chr8.1:84999308-84999327 | None:intergenic | 40.0% | |
AGGGATTTGGATGCTAAACT+AGG | - | chr8.1:84999815-84999834 | MS.gene022811:CDS | 40.0% | |
ATGCAAATGTGAAAAGGCTG+AGG | - | chr8.1:84999714-84999733 | MS.gene022811:CDS | 40.0% | |
CACGCTCAACCACAAAATAA+AGG | + | chr8.1:84998980-84998999 | None:intergenic | 40.0% | |
GAATGGGCATTAACAGCATT+AGG | - | chr8.1:84999524-84999543 | MS.gene022811:CDS | 40.0% | |
GAGACATATAGTGTCGTGTT+TGG | + | chr8.1:84999064-84999083 | None:intergenic | 40.0% | |
GTCTACTTTGCTTAAGAGTG+AGG | + | chr8.1:84999411-84999430 | None:intergenic | 40.0% | |
GTCTCTATCAGAAACTGAAC+AGG | - | chr8.1:84999079-84999098 | MS.gene022811:CDS | 40.0% | |
TCACAATAAACGCCTTCCAT+GGG | + | chr8.1:84999169-84999188 | None:intergenic | 40.0% | |
TGAATTGCTCAATCGTCCAT+GGG | + | chr8.1:84998436-84998455 | None:intergenic | 40.0% | |
TTCACAATAAACGCCTTCCA+TGG | + | chr8.1:84999170-84999189 | None:intergenic | 40.0% | |
TTGGATGCTAAACTAGGCTA+TGG | - | chr8.1:84999821-84999840 | MS.gene022811:CDS | 40.0% | |
! | AAAATTTGTTCCGCTGCTAG+AGG | - | chr8.1:84999367-84999386 | MS.gene022811:intron | 40.0% |
! | GTCAATTTGGTCGATTTCAG+GGG | - | chr8.1:84999326-84999345 | MS.gene022811:intron | 40.0% |
! | GTGTCAATTTGGTCGATTTC+AGG | - | chr8.1:84999324-84999343 | MS.gene022811:intron | 40.0% |
! | TGATAGAGGAAGCATGTTCA+TGG | - | chr8.1:84999447-84999466 | MS.gene022811:CDS | 40.0% |
! | TTTTCATGAGTGGCTATCCA+TGG | - | chr8.1:84998510-84998529 | MS.gene022811:CDS | 40.0% |
!!! | TCGGAGAGTTTTTTCATGAG+TGG | - | chr8.1:84998500-84998519 | MS.gene022811:CDS | 40.0% |
AAAGGGAACGAGAACAACTC+TGG | - | chr8.1:84998654-84998673 | MS.gene022811:CDS | 45.0% | |
ACCTTCGACAATTGTGAGCA+AGG | + | chr8.1:84998787-84998806 | None:intergenic | 45.0% | |
ATATATCTCCATGGTCCCCA+TGG | - | chr8.1:84998378-84998397 | MS.gene022811:CDS | 45.0% | |
CTTTACCCTCAATCGTCCAT+GGG | + | chr8.1:84998397-84998416 | None:intergenic | 45.0% | |
GAACATGCTTCCTCTATCAG+TGG | + | chr8.1:84999446-84999465 | None:intergenic | 45.0% | |
GAATTGCTCAATCGTCCATG+GGG | + | chr8.1:84998435-84998454 | None:intergenic | 45.0% | |
GACAATTGTGAGCAAGGCAT+TGG | + | chr8.1:84998781-84998800 | None:intergenic | 45.0% | |
GACACACAAATTGACACACG+AGG | + | chr8.1:84999309-84999328 | None:intergenic | 45.0% | |
GAGTATGCTTTCTCTTCCTC+TGG | + | chr8.1:84999493-84999512 | None:intergenic | 45.0% | |
GGACGATTGAGCAATTCACA+TGG | - | chr8.1:84998438-84998457 | MS.gene022811:CDS | 45.0% | |
GTGAATTGCTCAATCGTCCA+TGG | + | chr8.1:84998437-84998456 | None:intergenic | 45.0% | |
TGGGAAGAACTTGAGACAGT+TGG | - | chr8.1:84999623-84999642 | MS.gene022811:intron | 45.0% | |
TTTACCCTCAATCGTCCATG+GGG | + | chr8.1:84998396-84998415 | None:intergenic | 45.0% | |
! | GAGTTGTTCTCGTTCCCTTT+TGG | + | chr8.1:84998654-84998673 | None:intergenic | 45.0% |
! | GGAAGAGAAAGCATACTCGT+AGG | - | chr8.1:84999495-84999514 | MS.gene022811:CDS | 45.0% |
! | TGCTAGAGGAAGCATGTTCA+TGG | - | chr8.1:84999381-84999400 | MS.gene022811:intron | 45.0% |
AAGGCTGAGGAAGACTGTAG+AGG | - | chr8.1:84999727-84999746 | MS.gene022811:CDS | 50.0% | |
ACCAGCGCAACCAATCTCTT+TGG | - | chr8.1:84999280-84999299 | MS.gene022811:intron | 50.0% | |
ATTCACTCGAGCACCAACCA+TGG | + | chr8.1:84998530-84998549 | None:intergenic | 50.0% | |
CATGAGTGGCTATCCATGGT+TGG | - | chr8.1:84998514-84998533 | MS.gene022811:CDS | 50.0% | |
GAACATGCTTCCTCTAGCAG+CGG | + | chr8.1:84999380-84999399 | None:intergenic | 50.0% | |
GCCTTGCTCACAATTGTCGA+AGG | - | chr8.1:84998783-84998802 | MS.gene022811:CDS | 50.0% | |
GCTCACATGTTGACAACCAG+AGG | - | chr8.1:84999474-84999493 | MS.gene022811:CDS | 50.0% | |
GCTTTACCCTCAATCGTCCA+TGG | + | chr8.1:84998398-84998417 | None:intergenic | 50.0% | |
TGAACTCCACAACCCATGGA+AGG | - | chr8.1:84999154-84999173 | MS.gene022811:intron | 50.0% | |
TGGATGAACTCCACAACCCA+TGG | - | chr8.1:84999150-84999169 | MS.gene022811:intron | 50.0% | |
! | ACCAAAGAGATTGGTTGCGC+TGG | + | chr8.1:84999284-84999303 | None:intergenic | 50.0% |
! | TAAACGCCTTCCATGGGTTG+TGG | + | chr8.1:84999163-84999182 | None:intergenic | 50.0% |
! | TTGGTCGATTTCAGGGGCTT+AGG | - | chr8.1:84999332-84999351 | MS.gene022811:intron | 50.0% |
ATGGTCCCCATGGACGATTG+AGG | - | chr8.1:84998388-84998407 | MS.gene022811:CDS | 55.0% | |
TCAATCGTCCATGGGGACCA+TGG | + | chr8.1:84998389-84998408 | None:intergenic | 55.0% | |
TGGTCCCCATGGACGATTGA+GGG | - | chr8.1:84998389-84998408 | MS.gene022811:CDS | 55.0% | |
!! | CACGAGGGCACCAAAGAGAT+TGG | + | chr8.1:84999293-84999312 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 84998371 | 84999853 | 84998371 | ID=MS.gene022811 |
chr8.1 | mRNA | 84998371 | 84999853 | 84998371 | ID=MS.gene022811.t1;Parent=MS.gene022811 |
chr8.1 | exon | 84999693 | 84999853 | 84999693 | ID=MS.gene022811.t1.exon1;Parent=MS.gene022811.t1 |
chr8.1 | CDS | 84999693 | 84999853 | 84999693 | ID=cds.MS.gene022811.t1;Parent=MS.gene022811.t1 |
chr8.1 | exon | 84999420 | 84999589 | 84999420 | ID=MS.gene022811.t1.exon2;Parent=MS.gene022811.t1 |
chr8.1 | CDS | 84999420 | 84999589 | 84999420 | ID=cds.MS.gene022811.t1;Parent=MS.gene022811.t1 |
chr8.1 | exon | 84998371 | 84999134 | 84998371 | ID=MS.gene022811.t1.exon3;Parent=MS.gene022811.t1 |
chr8.1 | CDS | 84998371 | 84999134 | 84998371 | ID=cds.MS.gene022811.t1;Parent=MS.gene022811.t1 |
Gene Sequence |
Protein sequence |