Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025506.t1 | XP_003609164.2 | 92.2 | 335 | 16 | 1 | 1 | 325 | 1 | 335 | 1.20E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025506.t1 | P94111 | 40.8 | 333 | 169 | 8 | 6 | 321 | 1 | 322 | 3.5e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025506.t1 | G7JT39 | 92.2 | 335 | 16 | 1 | 1 | 325 | 1 | 335 | 8.7e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08297 | MS.gene025506 | PPI |
| MS.gene044500 | MS.gene025506 | PPI |
| MS.gene83238 | MS.gene025506 | PPI |
| MS.gene025506 | MS.gene35843 | PPI |
| MS.gene025506 | MS.gene033012 | PPI |
| MS.gene025506 | MS.gene68976 | PPI |
| MS.gene033015 | MS.gene025506 | PPI |
| MS.gene025506 | MS.gene78185 | PPI |
| MS.gene08295 | MS.gene025506 | PPI |
| MS.gene025506 | MS.gene023327 | PPI |
| MS.gene023328 | MS.gene025506 | PPI |
| MS.gene033026 | MS.gene025506 | PPI |
| MS.gene025506 | MS.gene68977 | PPI |
| MS.gene025506 | MS.gene045791 | PPI |
| MS.gene025506 | MS.gene83236 | PPI |
| MS.gene025506 | MS.gene044501 | PPI |
| MS.gene045793 | MS.gene025506 | PPI |
| MS.gene025506 | MS.gene34908 | PPI |
| MS.gene025506 | MS.gene038810 | PPI |
| MS.gene78183 | MS.gene025506 | PPI |
| MS.gene044490 | MS.gene025506 | PPI |
| MS.gene050115 | MS.gene025506 | PPI |
| MS.gene025506 | MS.gene033013 | PPI |
| MS.gene025506 | MS.gene063529 | PPI |
| MS.gene025506 | MS.gene044502 | PPI |
| MS.gene025506 | MS.gene044490 | PPI |
| MS.gene025506 | MS.gene038798 | PPI |
| MS.gene025506 | MS.gene68975 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025506.t1 | MTR_4g112670 | 92.239 | 335 | 16 | 1 | 1 | 325 | 1 | 335 | 0.0 | 625 |
| MS.gene025506.t1 | MTR_4g112650 | 74.777 | 337 | 71 | 3 | 2 | 326 | 1 | 335 | 0.0 | 506 |
| MS.gene025506.t1 | MTR_4g112630 | 68.750 | 336 | 80 | 3 | 2 | 324 | 1 | 324 | 1.97e-162 | 456 |
| MS.gene025506.t1 | MTR_4g112620 | 65.882 | 340 | 63 | 5 | 1 | 326 | 1 | 301 | 1.36e-150 | 425 |
| MS.gene025506.t1 | MTR_0003s0530 | 97.238 | 181 | 5 | 0 | 136 | 316 | 1 | 181 | 9.59e-126 | 358 |
| MS.gene025506.t1 | MTR_2g058450 | 51.792 | 307 | 135 | 3 | 27 | 322 | 28 | 332 | 3.80e-101 | 301 |
| MS.gene025506.t1 | MTR_7g490330 | 38.182 | 330 | 168 | 5 | 11 | 324 | 14 | 323 | 5.07e-70 | 221 |
| MS.gene025506.t1 | MTR_7g490350 | 35.913 | 323 | 164 | 4 | 38 | 324 | 52 | 367 | 1.90e-68 | 218 |
| MS.gene025506.t1 | MTR_5g091980 | 36.628 | 344 | 174 | 6 | 2 | 324 | 1 | 321 | 1.55e-65 | 209 |
| MS.gene025506.t1 | MTR_7g090300 | 36.810 | 326 | 157 | 6 | 38 | 324 | 52 | 367 | 3.62e-64 | 207 |
| MS.gene025506.t1 | MTR_2g087780 | 36.095 | 338 | 173 | 9 | 26 | 324 | 60 | 393 | 4.50e-62 | 202 |
| MS.gene025506.t1 | MTR_2g058410 | 49.351 | 231 | 104 | 3 | 103 | 322 | 1 | 229 | 3.94e-61 | 195 |
| MS.gene025506.t1 | MTR_4g050190 | 34.627 | 335 | 175 | 8 | 29 | 324 | 60 | 389 | 2.02e-60 | 198 |
| MS.gene025506.t1 | MTR_7g090320 | 34.911 | 338 | 178 | 7 | 29 | 324 | 48 | 385 | 5.70e-60 | 197 |
| MS.gene025506.t1 | MTR_7g090310 | 35.110 | 319 | 166 | 6 | 39 | 316 | 58 | 376 | 8.25e-56 | 186 |
| MS.gene025506.t1 | MTR_2g099030 | 31.548 | 336 | 191 | 5 | 27 | 324 | 70 | 404 | 7.09e-54 | 181 |
| MS.gene025506.t1 | MTR_4g112840 | 80.000 | 100 | 20 | 0 | 163 | 262 | 56 | 155 | 4.97e-51 | 167 |
| MS.gene025506.t1 | MTR_5g077620 | 73.256 | 86 | 21 | 2 | 4 | 89 | 1 | 84 | 4.74e-34 | 122 |
| MS.gene025506.t1 | MTR_5g077620 | 67.442 | 43 | 14 | 0 | 270 | 312 | 76 | 118 | 1.47e-12 | 64.7 |
| MS.gene025506.t1 | MTR_8g074170 | 32.068 | 237 | 131 | 4 | 39 | 267 | 78 | 292 | 3.63e-28 | 112 |
| MS.gene025506.t1 | MTR_8g074270 | 29.389 | 262 | 151 | 5 | 39 | 292 | 78 | 313 | 4.23e-26 | 107 |
| MS.gene025506.t1 | MTR_8g074210 | 31.304 | 230 | 126 | 5 | 37 | 257 | 76 | 282 | 1.71e-23 | 99.8 |
| MS.gene025506.t1 | MTR_2g042420 | 28.247 | 308 | 180 | 13 | 40 | 324 | 58 | 347 | 2.13e-22 | 96.3 |
| MS.gene025506.t1 | MTR_2g042430 | 31.364 | 220 | 132 | 6 | 40 | 257 | 77 | 279 | 2.98e-22 | 96.3 |
| MS.gene025506.t1 | MTR_2g042370 | 27.097 | 310 | 182 | 12 | 40 | 324 | 65 | 355 | 7.57e-22 | 95.1 |
| MS.gene025506.t1 | MTR_1g075865 | 38.095 | 105 | 64 | 1 | 141 | 245 | 7 | 110 | 9.72e-17 | 75.9 |
| MS.gene025506.t1 | MTR_2g058430 | 44.706 | 85 | 37 | 1 | 92 | 166 | 50 | 134 | 8.47e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025506.t1 | AT1G74020 | 42.020 | 307 | 154 | 7 | 28 | 321 | 27 | 322 | 3.82e-69 | 219 |
| MS.gene025506.t1 | AT3G57030 | 37.695 | 321 | 163 | 5 | 38 | 324 | 55 | 372 | 1.47e-68 | 219 |
| MS.gene025506.t1 | AT1G74010 | 41.368 | 307 | 155 | 8 | 28 | 321 | 26 | 320 | 3.87e-67 | 213 |
| MS.gene025506.t1 | AT1G74000 | 39.739 | 307 | 161 | 6 | 28 | 321 | 29 | 324 | 2.17e-65 | 209 |
| MS.gene025506.t1 | AT1G08470 | 36.036 | 333 | 172 | 7 | 29 | 324 | 59 | 387 | 2.55e-65 | 211 |
| MS.gene025506.t1 | AT3G57010 | 37.226 | 274 | 144 | 5 | 8 | 259 | 11 | 278 | 7.50e-63 | 204 |
| MS.gene025506.t1 | AT5G22020 | 34.535 | 333 | 177 | 8 | 29 | 324 | 65 | 393 | 3.05e-61 | 200 |
| MS.gene025506.t1 | AT5G22020 | 34.535 | 333 | 177 | 8 | 29 | 324 | 65 | 393 | 3.05e-61 | 200 |
| MS.gene025506.t1 | AT5G22020 | 34.535 | 333 | 177 | 8 | 29 | 324 | 65 | 393 | 3.05e-61 | 200 |
| MS.gene025506.t1 | AT3G57020 | 39.241 | 237 | 128 | 2 | 33 | 259 | 47 | 277 | 1.30e-59 | 196 |
| MS.gene025506.t1 | AT2G41300 | 33.987 | 306 | 162 | 4 | 46 | 317 | 85 | 384 | 1.82e-55 | 185 |
| MS.gene025506.t1 | AT3G57020 | 36.709 | 237 | 120 | 2 | 33 | 259 | 47 | 263 | 6.73e-54 | 180 |
| MS.gene025506.t1 | AT2G41290 | 35.780 | 327 | 166 | 10 | 39 | 324 | 51 | 374 | 1.37e-52 | 177 |
| MS.gene025506.t1 | AT3G59530 | 35.802 | 243 | 140 | 4 | 30 | 257 | 75 | 316 | 3.70e-50 | 172 |
| MS.gene025506.t1 | AT3G59530 | 35.802 | 243 | 140 | 4 | 30 | 257 | 75 | 316 | 3.70e-50 | 172 |
| MS.gene025506.t1 | AT3G59530 | 35.802 | 243 | 140 | 4 | 30 | 257 | 75 | 316 | 3.70e-50 | 172 |
| MS.gene025506.t1 | AT3G51420 | 26.176 | 340 | 195 | 12 | 17 | 322 | 40 | 357 | 2.06e-22 | 96.7 |
| MS.gene025506.t1 | AT3G51440 | 26.910 | 301 | 170 | 9 | 17 | 300 | 40 | 307 | 4.35e-20 | 90.1 |
| MS.gene025506.t1 | AT3G51430 | 27.407 | 270 | 153 | 8 | 40 | 299 | 70 | 306 | 4.61e-19 | 87.4 |
| MS.gene025506.t1 | AT3G51430 | 27.037 | 270 | 152 | 8 | 40 | 299 | 70 | 304 | 4.71e-19 | 87.0 |
| MS.gene025506.t1 | AT3G51450 | 28.261 | 230 | 134 | 6 | 40 | 259 | 70 | 278 | 2.28e-18 | 85.1 |
Find 78 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCGGGAGGCCAATTT+TGG | 0.194145 | 4.4:-63323884 | MS.gene025506:CDS |
| ATATATTTATTTACCTGTTT+GGG | 0.226866 | 4.4:+63324674 | None:intergenic |
| GAATTCCTCTTGATGTTATT+TGG | 0.230169 | 4.4:+63323900 | None:intergenic |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.272786 | 4.4:+63324353 | None:intergenic |
| TACTATGTTTGCTGATGGTT+TGG | 0.278759 | 4.4:-63324323 | MS.gene025506:CDS |
| TATGCACTGAAATCCAAAAT+TGG | 0.298675 | 4.4:+63323871 | None:intergenic |
| GATATATTTATTTACCTGTT+TGG | 0.315475 | 4.4:+63324673 | None:intergenic |
| GCATCTCTTGCTGCTGAGTA+TGG | 0.315822 | 4.4:-63323756 | MS.gene025506:CDS |
| ATTGGCAATCATGTTGAATA+TGG | 0.317723 | 4.4:-63324917 | None:intergenic |
| GAACTATTCATGCTACTTAC+TGG | 0.331413 | 4.4:-63323927 | MS.gene025506:CDS |
| AAATAACATCAAGAGGAATT+CGG | 0.368111 | 4.4:-63323898 | MS.gene025506:CDS |
| GTTGTACGCCTTGGAGATAT+TGG | 0.370321 | 4.4:+63323828 | None:intergenic |
| CTCCACTAGTTAGCAGTGTT+TGG | 0.373816 | 4.4:+63324132 | None:intergenic |
| GCTAACTAGTGGAGATAGTT+CGG | 0.406368 | 4.4:-63324123 | MS.gene025506:CDS |
| GCAACATGTGGAAGGCCATT+AGG | 0.408625 | 4.4:-63324470 | MS.gene025506:CDS |
| TTGTGCAGGTCCAACTAATT+GGG | 0.417683 | 4.4:+63324354 | None:intergenic |
| AAAACAATGCTTACTTGAGT+TGG | 0.418022 | 4.4:+63324248 | None:intergenic |
| AATAACATCAAGAGGAATTC+GGG | 0.422435 | 4.4:-63323897 | MS.gene025506:CDS |
| ATGGCCTTCCACATGTTGCT+TGG | 0.423208 | 4.4:+63324474 | None:intergenic |
| TTGGGTTACGTTCCCGCCAT+CGG | 0.441350 | 4.4:+63324372 | None:intergenic |
| TGTGGAAGGCCATTAGGATT+GGG | 0.448985 | 4.4:-63324464 | MS.gene025506:CDS |
| CTAACTAGTGGAGATAGTTC+GGG | 0.455356 | 4.4:-63324122 | MS.gene025506:CDS |
| ATGCTTACTCTTCCCCAAAC+AGG | 0.456947 | 4.4:-63324687 | MS.gene025506:intron |
| TGGGTTACGTTCCCGCCATC+GGG | 0.457014 | 4.4:+63324373 | None:intergenic |
| AGCAATCTTGCAATGCCATC+TGG | 0.458768 | 4.4:-63324050 | MS.gene025506:CDS |
| AAATATAATGGTCCAGATGT+AGG | 0.459994 | 4.4:-63324721 | MS.gene025506:CDS |
| ATGTGGAAGGCCATTAGGAT+TGG | 0.461713 | 4.4:-63324465 | MS.gene025506:CDS |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 4.4:-63324754 | MS.gene025506:CDS |
| TGGTCCAGATGTAGGTTTCA+AGG | 0.477646 | 4.4:-63324713 | MS.gene025506:CDS |
| AAATAAACGATTCCAGTGTC+AGG | 0.481590 | 4.4:+63324292 | None:intergenic |
| TAGCAACACTGTCGTTTGAT+TGG | 0.481910 | 4.4:+63324073 | None:intergenic |
| TATTCCTTGAAACCTACATC+TGG | 0.482961 | 4.4:+63324709 | None:intergenic |
| TACTCTTGAACCTCACTAGC+AGG | 0.484299 | 4.4:+63323726 | None:intergenic |
| AGTTCTGATGAATTCGCTCT+TGG | 0.489051 | 4.4:+63323945 | None:intergenic |
| TGATTGAAACCCAATCCTAA+TGG | 0.503097 | 4.4:+63324455 | None:intergenic |
| AGTAATATAGCTACTGATGA+TGG | 0.504220 | 4.4:+63324847 | None:intergenic |
| CGAGGCAAAGTTGTACGCCT+TGG | 0.507623 | 4.4:+63323819 | None:intergenic |
| GCTAGCATAAGAAGCAAGTA+GGG | 0.508157 | 4.4:+63323680 | None:intergenic |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 4.4:+63324754 | None:intergenic |
| TTATCAAATGCAAGTGACTC+AGG | 0.517239 | 4.4:+63324790 | None:intergenic |
| CTTGTTAAGGTTAGTCCCGA+TGG | 0.524815 | 4.4:-63324388 | MS.gene025506:intron |
| TCAGGTCCTGTCACTGGTGA+TGG | 0.530888 | 4.4:+63324808 | None:intergenic |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.531219 | 4.4:+63324802 | None:intergenic |
| GGGAACGTAACCCAATTAGT+TGG | 0.534211 | 4.4:-63324364 | MS.gene025506:CDS |
| ATAGTAGAATTGCCTTGTGC+AGG | 0.536515 | 4.4:+63324340 | None:intergenic |
| AATTCTACTATGTTTGCTGA+TGG | 0.537613 | 4.4:-63324328 | MS.gene025506:CDS |
| TACAATGGAAAACTCTATGC+CGG | 0.540632 | 4.4:-63323705 | MS.gene025506:CDS |
| TTTGAAAATTCTTCCATCAG+AGG | 0.540669 | 4.4:+63324741 | None:intergenic |
| TTGGGTTTCAATCATCAGAC+AGG | 0.541284 | 4.4:-63324446 | MS.gene025506:CDS |
| ATTCAAAGAGTGTGGCTGAA+AGG | 0.545258 | 4.4:-63323969 | MS.gene025506:CDS |
| TTAAGGTTAGTCCCGATGGC+GGG | 0.545979 | 4.4:-63324384 | MS.gene025506:intron |
| TGCTAGCATAAGAAGCAAGT+AGG | 0.546566 | 4.4:+63323679 | None:intergenic |
| CTACTTACTGCCACACCAGA+TGG | 0.548108 | 4.4:+63324035 | None:intergenic |
| ATAAGAAGCAAGTAGGGAGC+CGG | 0.550043 | 4.4:+63323686 | None:intergenic |
| CAGCTACCATCACCAGTGAC+AGG | 0.576598 | 4.4:-63324814 | MS.gene025506:CDS |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 4.4:-63324766 | MS.gene025506:CDS |
| GAAGACCAAATAACATCAAG+AGG | 0.582125 | 4.4:-63323905 | MS.gene025506:CDS |
| ACTGTCGTTTGATTGGTGCT+AGG | 0.594902 | 4.4:+63324080 | None:intergenic |
| CAGTCCAAGCAACATGTGGA+AGG | 0.599866 | 4.4:-63324478 | MS.gene025506:CDS |
| TACCAAACACTGCTAACTAG+TGG | 0.600039 | 4.4:-63324134 | MS.gene025506:CDS |
| GGACTGCTGAGAAGTCAGTA+AGG | 0.601150 | 4.4:+63324495 | None:intergenic |
| TGGTACTGAACCTGCTAGTG+AGG | 0.601855 | 4.4:-63323736 | MS.gene025506:CDS |
| CAATTAGTTGGACCTGCACA+AGG | 0.606283 | 4.4:-63324352 | MS.gene025506:CDS |
| CAAACAGAATTCAAAGAGTG+TGG | 0.607750 | 4.4:-63323977 | MS.gene025506:CDS |
| TATATTTATTTACCTGTTTG+GGG | 0.609131 | 4.4:+63324675 | None:intergenic |
| AGGAATAAGACAGTCTGTGA+TGG | 0.609820 | 4.4:-63324518 | MS.gene025506:CDS |
| TCTTGCAATGCCATCTGGTG+TGG | 0.621845 | 4.4:-63324045 | MS.gene025506:CDS |
| GTTAAGGTTAGTCCCGATGG+CGG | 0.628554 | 4.4:-63324385 | MS.gene025506:intron |
| TCAGCAGTCCAAGCAACATG+TGG | 0.630269 | 4.4:-63324482 | MS.gene025506:CDS |
| TTGGAAGTTAGTGCTAGCTA+CGG | 0.633035 | 4.4:+63324267 | None:intergenic |
| GGTGTGGCAGTAAGTAGAGA+CGG | 0.639411 | 4.4:-63324029 | MS.gene025506:CDS |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.643469 | 4.4:-63323720 | MS.gene025506:CDS |
| AATCATGTTGAATATGGCAA+TGG | 0.647554 | 4.4:-63324911 | None:intergenic |
| TAGGACTGCCAATATCTCCA+AGG | 0.665475 | 4.4:-63323836 | MS.gene025506:CDS |
| TTGGATGTAGATCCTGACAC+TGG | 0.674256 | 4.4:-63324304 | MS.gene025506:CDS |
| AACATCAAGAGGAATTCGGG+AGG | 0.694290 | 4.4:-63323894 | MS.gene025506:CDS |
| AGGCGTACAACTTTGCCTCG+CGG | 0.713400 | 4.4:-63323816 | MS.gene025506:CDS |
| TTAGACACTCTGACTCCGCG+AGG | 0.759579 | 4.4:+63323801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTTATTTACCTGTTT+GGG | + | chr4.4:63323901-63323920 | None:intergenic | 15.0% |
| !!! | ACATTACTTTAATTTTTGTA+GGG | - | chr4.4:63324413-63324432 | MS.gene025506:intron | 15.0% |
| !!! | AGAAATGATTTTTTTTATCT+TGG | - | chr4.4:63324028-63324047 | MS.gene025506:CDS | 15.0% |
| !!! | TAGTACTTTTACAAAATAAA+CGG | + | chr4.4:63323974-63323993 | None:intergenic | 15.0% |
| !! | GATATATTTATTTACCTGTT+TGG | + | chr4.4:63323902-63323921 | None:intergenic | 20.0% |
| !! | TATATTTATTTACCTGTTTG+GGG | + | chr4.4:63323900-63323919 | None:intergenic | 20.0% |
| !!! | CACATTACTTTAATTTTTGT+AGG | - | chr4.4:63324412-63324431 | MS.gene025506:intron | 20.0% |
| !!! | GGAAGAATTTTCAAATATAA+TGG | - | chr4.4:63323839-63323858 | MS.gene025506:CDS | 20.0% |
| ! | AAATAACATCAAGAGGAATT+CGG | - | chr4.4:63324674-63324693 | MS.gene025506:intron | 25.0% |
| ! | TCACTTGCATTTGATAAAAA+CGG | - | chr4.4:63323788-63323807 | MS.gene025506:CDS | 25.0% |
| ! | TTGTTATAGTAATGCAGAAT+TGG | + | chr4.4:63324387-63324406 | None:intergenic | 25.0% |
| !!! | CATTGTTTTTCTACATACAA+TGG | - | chr4.4:63324338-63324357 | MS.gene025506:CDS | 25.0% |
| !!! | GATTTTTTTTATCTTGGATC+AGG | - | chr4.4:63324034-63324053 | MS.gene025506:CDS | 25.0% |
| AAAACAATGCTTACTTGAGT+TGG | + | chr4.4:63324327-63324346 | None:intergenic | 30.0% | |
| AAATATAATGGTCCAGATGT+AGG | - | chr4.4:63323851-63323870 | MS.gene025506:CDS | 30.0% | |
| AATAACATCAAGAGGAATTC+GGG | - | chr4.4:63324675-63324694 | MS.gene025506:intron | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | + | chr4.4:63323728-63323747 | None:intergenic | 30.0% | |
| GAATTCCTCTTGATGTTATT+TGG | + | chr4.4:63324675-63324694 | None:intergenic | 30.0% | |
| TATGCACTGAAATCCAAAAT+TGG | + | chr4.4:63324704-63324723 | None:intergenic | 30.0% | |
| TTTGAAAATTCTTCCATCAG+AGG | + | chr4.4:63323834-63323853 | None:intergenic | 30.0% | |
| ! | AATTCTACTATGTTTGCTGA+TGG | - | chr4.4:63324244-63324263 | MS.gene025506:intron | 30.0% |
| ! | ATTTCAGTGCATAGTGTTTT+AGG | - | chr4.4:63324711-63324730 | MS.gene025506:CDS | 30.0% |
| AAACGGTCACTTAACTCATT+AGG | + | chr4.4:63323957-63323976 | None:intergenic | 35.0% | |
| AAATAAACGATTCCAGTGTC+AGG | + | chr4.4:63324283-63324302 | None:intergenic | 35.0% | |
| CAAACAGAATTCAAAGAGTG+TGG | - | chr4.4:63324595-63324614 | MS.gene025506:intron | 35.0% | |
| GAAGACCAAATAACATCAAG+AGG | - | chr4.4:63324667-63324686 | MS.gene025506:intron | 35.0% | |
| GCATTTGATAAAAACGGTGA+AGG | - | chr4.4:63323794-63323813 | MS.gene025506:CDS | 35.0% | |
| TACAATGGAAAACTCTATGC+CGG | - | chr4.4:63324867-63324886 | MS.gene025506:CDS | 35.0% | |
| TAGCTAGCAGATGCTTATTT+GGG | - | chr4.4:63324160-63324179 | MS.gene025506:intron | 35.0% | |
| TATTCCTTGAAACCTACATC+TGG | + | chr4.4:63323866-63323885 | None:intergenic | 35.0% | |
| TGATTGAAACCCAATCCTAA+TGG | + | chr4.4:63324120-63324139 | None:intergenic | 35.0% | |
| TTATCAAATGCAAGTGACTC+AGG | + | chr4.4:63323785-63323804 | None:intergenic | 35.0% | |
| ! | GAACTATTCATGCTACTTAC+TGG | - | chr4.4:63324645-63324664 | MS.gene025506:intron | 35.0% |
| ! | TACTATGTTTGCTGATGGTT+TGG | - | chr4.4:63324249-63324268 | MS.gene025506:intron | 35.0% |
| !!! | GTGCATAGTGTTTTAGGATT+AGG | - | chr4.4:63324717-63324736 | MS.gene025506:CDS | 35.0% |
| AGCTAGCAGATGCTTATTTG+GGG | - | chr4.4:63324161-63324180 | MS.gene025506:intron | 40.0% | |
| AGGAATAAGACAGTCTGTGA+TGG | - | chr4.4:63324054-63324073 | MS.gene025506:CDS | 40.0% | |
| ATAGTAGAATTGCCTTGTGC+AGG | + | chr4.4:63324235-63324254 | None:intergenic | 40.0% | |
| CTAACTAGTGGAGATAGTTC+GGG | - | chr4.4:63324450-63324469 | MS.gene025506:CDS | 40.0% | |
| GCTAACTAGTGGAGATAGTT+CGG | - | chr4.4:63324449-63324468 | MS.gene025506:CDS | 40.0% | |
| GCTAGCATAAGAAGCAAGTA+GGG | + | chr4.4:63324895-63324914 | None:intergenic | 40.0% | |
| GTAGCTAGCAGATGCTTATT+TGG | - | chr4.4:63324159-63324178 | MS.gene025506:intron | 40.0% | |
| TACCAAACACTGCTAACTAG+TGG | - | chr4.4:63324438-63324457 | MS.gene025506:CDS | 40.0% | |
| TGCTAGCATAAGAAGCAAGT+AGG | + | chr4.4:63324896-63324915 | None:intergenic | 40.0% | |
| TTGGAAGTTAGTGCTAGCTA+CGG | + | chr4.4:63324308-63324327 | None:intergenic | 40.0% | |
| TTGGGTTTCAATCATCAGAC+AGG | - | chr4.4:63324126-63324145 | MS.gene025506:CDS | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | + | chr4.4:63324221-63324240 | None:intergenic | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr4.4:63324852-63324871 | MS.gene025506:CDS | 40.0% |
| ! | AGTTCTGATGAATTCGCTCT+TGG | + | chr4.4:63324630-63324649 | None:intergenic | 40.0% |
| ! | ATTCAAAGAGTGTGGCTGAA+AGG | - | chr4.4:63324603-63324622 | MS.gene025506:intron | 40.0% |
| ! | TAGCAACACTGTCGTTTGAT+TGG | + | chr4.4:63324502-63324521 | None:intergenic | 40.0% |
| !! | TGCTTATTTGGGGCTTGTTA+AGG | - | chr4.4:63324171-63324190 | MS.gene025506:intron | 40.0% |
| AACATCAAGAGGAATTCGGG+AGG | - | chr4.4:63324678-63324697 | MS.gene025506:intron | 45.0% | |
| AACGGTGAAGGACCTTATGT+TGG | - | chr4.4:63323806-63323825 | MS.gene025506:CDS | 45.0% | |
| AGCAATCTTGCAATGCCATC+TGG | - | chr4.4:63324522-63324541 | MS.gene025506:intron | 45.0% | |
| ATAAGAAGCAAGTAGGGAGC+CGG | + | chr4.4:63324889-63324908 | None:intergenic | 45.0% | |
| ATGCTTACTCTTCCCCAAAC+AGG | - | chr4.4:63323885-63323904 | MS.gene025506:CDS | 45.0% | |
| ATGTGGAAGGCCATTAGGAT+TGG | - | chr4.4:63324107-63324126 | MS.gene025506:CDS | 45.0% | |
| CAATTAGTTGGACCTGCACA+AGG | - | chr4.4:63324220-63324239 | MS.gene025506:intron | 45.0% | |
| CTCCACTAGTTAGCAGTGTT+TGG | + | chr4.4:63324443-63324462 | None:intergenic | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | + | chr4.4:63324222-63324241 | None:intergenic | 45.0% | |
| GGGAACGTAACCCAATTAGT+TGG | - | chr4.4:63324208-63324227 | MS.gene025506:intron | 45.0% | |
| GTTGTACGCCTTGGAGATAT+TGG | + | chr4.4:63324747-63324766 | None:intergenic | 45.0% | |
| TACTCTTGAACCTCACTAGC+AGG | + | chr4.4:63324849-63324868 | None:intergenic | 45.0% | |
| TAGGACTGCCAATATCTCCA+AGG | - | chr4.4:63324736-63324755 | MS.gene025506:CDS | 45.0% | |
| TGGTCCAGATGTAGGTTTCA+AGG | - | chr4.4:63323859-63323878 | MS.gene025506:CDS | 45.0% | |
| TGTGGAAGGCCATTAGGATT+GGG | - | chr4.4:63324108-63324127 | MS.gene025506:CDS | 45.0% | |
| TTGGATGTAGATCCTGACAC+TGG | - | chr4.4:63324268-63324287 | MS.gene025506:CDS | 45.0% | |
| ! | ACTGTCGTTTGATTGGTGCT+AGG | + | chr4.4:63324495-63324514 | None:intergenic | 45.0% |
| ! | CTTGTTAAGGTTAGTCCCGA+TGG | - | chr4.4:63324184-63324203 | MS.gene025506:intron | 45.0% |
| ATGGCCTTCCACATGTTGCT+TGG | + | chr4.4:63324101-63324120 | None:intergenic | 50.0% | |
| CAGTCCAAGCAACATGTGGA+AGG | - | chr4.4:63324094-63324113 | MS.gene025506:CDS | 50.0% | |
| CCATCAGAGGAGCCAACATA+AGG | + | chr4.4:63323821-63323840 | None:intergenic | 50.0% | |
| CTACTTACTGCCACACCAGA+TGG | + | chr4.4:63324540-63324559 | None:intergenic | 50.0% | |
| GCAACATGTGGAAGGCCATT+AGG | - | chr4.4:63324102-63324121 | MS.gene025506:CDS | 50.0% | |
| GCATCTCTTGCTGCTGAGTA+TGG | - | chr4.4:63324816-63324835 | MS.gene025506:CDS | 50.0% | |
| GGACTGCTGAGAAGTCAGTA+AGG | + | chr4.4:63324080-63324099 | None:intergenic | 50.0% | |
| GGTGTGGCAGTAAGTAGAGA+CGG | - | chr4.4:63324543-63324562 | MS.gene025506:intron | 50.0% | |
| TCAGCAGTCCAAGCAACATG+TGG | - | chr4.4:63324090-63324109 | MS.gene025506:CDS | 50.0% | |
| TCTTGCAATGCCATCTGGTG+TGG | - | chr4.4:63324527-63324546 | MS.gene025506:intron | 50.0% | |
| ! | GGAATTCGGGAGGCCAATTT+TGG | - | chr4.4:63324688-63324707 | MS.gene025506:CDS | 50.0% |
| ! | GTTAAGGTTAGTCCCGATGG+CGG | - | chr4.4:63324187-63324206 | MS.gene025506:intron | 50.0% |
| ! | TGGTACTGAACCTGCTAGTG+AGG | - | chr4.4:63324836-63324855 | MS.gene025506:CDS | 50.0% |
| ! | TTAAGGTTAGTCCCGATGGC+GGG | - | chr4.4:63324188-63324207 | MS.gene025506:intron | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | - | chr4.4:63323818-63323837 | MS.gene025506:CDS | 50.0% |
| AGGCGTACAACTTTGCCTCG+CGG | - | chr4.4:63324756-63324775 | MS.gene025506:CDS | 55.0% | |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr4.4:63323773-63323792 | None:intergenic | 55.0% | |
| CAGCTACCATCACCAGTGAC+AGG | - | chr4.4:63323758-63323777 | MS.gene025506:CDS | 55.0% | |
| CGAGGCAAAGTTGTACGCCT+TGG | + | chr4.4:63324756-63324775 | None:intergenic | 55.0% | |
| TCAGGTCCTGTCACTGGTGA+TGG | + | chr4.4:63323767-63323786 | None:intergenic | 55.0% | |
| TTAGACACTCTGACTCCGCG+AGG | + | chr4.4:63324774-63324793 | None:intergenic | 55.0% | |
| TTGGGTTACGTTCCCGCCAT+CGG | + | chr4.4:63324203-63324222 | None:intergenic | 55.0% | |
| TGGGTTACGTTCCCGCCATC+GGG | + | chr4.4:63324202-63324221 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 63323665 | 63324929 | 63323665 | ID=MS.gene025506 |
| chr4.4 | mRNA | 63323665 | 63324929 | 63323665 | ID=MS.gene025506.t1;Parent=MS.gene025506 |
| chr4.4 | exon | 63324688 | 63324929 | 63324688 | ID=MS.gene025506.t1.exon1;Parent=MS.gene025506.t1 |
| chr4.4 | CDS | 63324688 | 63324929 | 63324688 | ID=cds.MS.gene025506.t1;Parent=MS.gene025506.t1 |
| chr4.4 | exon | 63324436 | 63324538 | 63324436 | ID=MS.gene025506.t1.exon2;Parent=MS.gene025506.t1 |
| chr4.4 | CDS | 63324436 | 63324538 | 63324436 | ID=cds.MS.gene025506.t1;Parent=MS.gene025506.t1 |
| chr4.4 | exon | 63324262 | 63324401 | 63324262 | ID=MS.gene025506.t1.exon3;Parent=MS.gene025506.t1 |
| chr4.4 | CDS | 63324262 | 63324401 | 63324262 | ID=cds.MS.gene025506.t1;Parent=MS.gene025506.t1 |
| chr4.4 | exon | 63323665 | 63324160 | 63323665 | ID=MS.gene025506.t1.exon4;Parent=MS.gene025506.t1 |
| chr4.4 | CDS | 63323665 | 63324160 | 63323665 | ID=cds.MS.gene025506.t1;Parent=MS.gene025506.t1 |
| Gene Sequence |
| Protein sequence |
