Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033013.t1 | RHN63780.1 | 97 | 334 | 10 | 0 | 1 | 334 | 14 | 347 | 5.20E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033013.t1 | P94111 | 42.6 | 326 | 171 | 7 | 11 | 330 | 7 | 322 | 7.4e-61 | 235.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033013.t1 | G7JT37 | 97.0 | 334 | 10 | 0 | 1 | 334 | 1 | 334 | 3.8e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033013 | MS.gene045791 | PPI |
| MS.gene033013 | MS.gene83236 | PPI |
| MS.gene033026 | MS.gene033013 | PPI |
| MS.gene033013 | MS.gene044501 | PPI |
| MS.gene033013 | MS.gene34908 | PPI |
| MS.gene033013 | MS.gene038810 | PPI |
| MS.gene045793 | MS.gene033013 | PPI |
| MS.gene68977 | MS.gene033013 | PPI |
| MS.gene050115 | MS.gene033013 | PPI |
| MS.gene033013 | MS.gene063529 | PPI |
| MS.gene033013 | MS.gene044502 | PPI |
| MS.gene033013 | MS.gene038798 | PPI |
| MS.gene033013 | MS.gene68975 | PPI |
| MS.gene78183 | MS.gene033013 | PPI |
| MS.gene044490 | MS.gene033013 | PPI |
| MS.gene033013 | MS.gene35843 | PPI |
| MS.gene08297 | MS.gene033013 | PPI |
| MS.gene033013 | MS.gene033012 | PPI |
| MS.gene033013 | MS.gene68976 | PPI |
| MS.gene025506 | MS.gene033013 | PPI |
| MS.gene033015 | MS.gene033013 | PPI |
| MS.gene033013 | MS.gene78185 | PPI |
| MS.gene033013 | MS.gene023327 | PPI |
| MS.gene08295 | MS.gene033013 | PPI |
| MS.gene044500 | MS.gene033013 | PPI |
| MS.gene023328 | MS.gene033013 | PPI |
| MS.gene83238 | MS.gene033013 | PPI |
| MS.gene033013 | MS.gene68977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033013.t1 | MTR_4g112650 | 97.006 | 334 | 10 | 0 | 1 | 334 | 1 | 334 | 0.0 | 660 |
| MS.gene033013.t1 | MTR_4g112630 | 81.250 | 336 | 52 | 2 | 1 | 335 | 1 | 326 | 0.0 | 540 |
| MS.gene033013.t1 | MTR_4g112670 | 78.209 | 335 | 69 | 2 | 1 | 333 | 2 | 334 | 0.0 | 525 |
| MS.gene033013.t1 | MTR_4g112620 | 74.775 | 333 | 45 | 3 | 2 | 334 | 7 | 300 | 1.07e-174 | 486 |
| MS.gene033013.t1 | MTR_2g058450 | 54.072 | 307 | 138 | 2 | 26 | 331 | 28 | 332 | 4.83e-108 | 319 |
| MS.gene033013.t1 | MTR_0003s0530 | 77.049 | 183 | 38 | 2 | 145 | 325 | 1 | 181 | 3.36e-96 | 284 |
| MS.gene033013.t1 | MTR_7g490330 | 41.284 | 327 | 166 | 5 | 9 | 329 | 13 | 319 | 1.55e-77 | 240 |
| MS.gene033013.t1 | MTR_2g058410 | 52.790 | 233 | 109 | 1 | 102 | 334 | 1 | 232 | 7.42e-74 | 228 |
| MS.gene033013.t1 | MTR_7g490350 | 37.975 | 316 | 167 | 3 | 38 | 329 | 53 | 363 | 1.48e-72 | 229 |
| MS.gene033013.t1 | MTR_7g090300 | 36.486 | 370 | 187 | 8 | 1 | 329 | 1 | 363 | 5.69e-68 | 217 |
| MS.gene033013.t1 | MTR_2g087780 | 39.474 | 342 | 166 | 9 | 25 | 333 | 60 | 393 | 7.58e-67 | 215 |
| MS.gene033013.t1 | MTR_5g091980 | 41.156 | 294 | 149 | 5 | 37 | 329 | 47 | 317 | 1.12e-66 | 213 |
| MS.gene033013.t1 | MTR_7g090320 | 36.812 | 345 | 172 | 8 | 28 | 333 | 48 | 385 | 4.84e-64 | 208 |
| MS.gene033013.t1 | MTR_4g050190 | 38.298 | 329 | 165 | 8 | 36 | 333 | 68 | 389 | 1.16e-63 | 207 |
| MS.gene033013.t1 | MTR_2g099030 | 33.432 | 338 | 192 | 4 | 26 | 333 | 70 | 404 | 1.58e-59 | 196 |
| MS.gene033013.t1 | MTR_7g090310 | 36.170 | 329 | 175 | 7 | 38 | 333 | 58 | 384 | 9.08e-59 | 194 |
| MS.gene033013.t1 | MTR_4g112840 | 76.471 | 102 | 22 | 1 | 172 | 273 | 56 | 155 | 8.26e-48 | 159 |
| MS.gene033013.t1 | MTR_5g077620 | 73.810 | 84 | 19 | 3 | 4 | 87 | 2 | 82 | 1.08e-31 | 116 |
| MS.gene033013.t1 | MTR_8g074210 | 34.043 | 235 | 129 | 5 | 36 | 270 | 76 | 284 | 4.92e-29 | 115 |
| MS.gene033013.t1 | MTR_8g074270 | 33.047 | 233 | 130 | 5 | 38 | 270 | 78 | 284 | 4.28e-27 | 110 |
| MS.gene033013.t1 | MTR_8g074170 | 32.618 | 233 | 131 | 5 | 38 | 270 | 78 | 284 | 5.50e-27 | 109 |
| MS.gene033013.t1 | MTR_2g058430 | 48.077 | 104 | 45 | 1 | 75 | 178 | 43 | 137 | 1.89e-22 | 95.1 |
| MS.gene033013.t1 | MTR_2g042430 | 30.736 | 231 | 131 | 8 | 39 | 268 | 77 | 279 | 8.45e-22 | 95.1 |
| MS.gene033013.t1 | MTR_2g042370 | 35.443 | 158 | 95 | 5 | 113 | 268 | 116 | 268 | 4.67e-20 | 90.1 |
| MS.gene033013.t1 | MTR_2g042420 | 25.157 | 318 | 187 | 13 | 39 | 333 | 58 | 347 | 1.89e-19 | 88.2 |
| MS.gene033013.t1 | MTR_1g075865 | 39.815 | 108 | 62 | 2 | 150 | 257 | 7 | 111 | 9.25e-17 | 76.3 |
| MS.gene033013.t1 | MTR_8g074320 | 36.434 | 129 | 75 | 4 | 99 | 224 | 95 | 219 | 1.48e-15 | 75.1 |
| MS.gene033013.t1 | MTR_5g093640 | 40.816 | 98 | 12 | 2 | 238 | 335 | 52 | 103 | 1.31e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033013.t1 | AT1G74020 | 43.791 | 306 | 160 | 6 | 27 | 330 | 27 | 322 | 2.72e-73 | 230 |
| MS.gene033013.t1 | AT1G74010 | 43.279 | 305 | 162 | 7 | 27 | 330 | 26 | 320 | 6.79e-70 | 221 |
| MS.gene033013.t1 | AT1G08470 | 39.450 | 327 | 163 | 8 | 36 | 333 | 67 | 387 | 3.77e-68 | 218 |
| MS.gene033013.t1 | AT3G57030 | 35.389 | 373 | 186 | 6 | 7 | 329 | 1 | 368 | 8.04e-68 | 217 |
| MS.gene033013.t1 | AT1G74000 | 40.984 | 305 | 170 | 6 | 27 | 330 | 29 | 324 | 1.01e-67 | 216 |
| MS.gene033013.t1 | AT3G57010 | 41.870 | 246 | 135 | 3 | 25 | 270 | 41 | 278 | 1.43e-64 | 209 |
| MS.gene033013.t1 | AT5G22020 | 38.415 | 328 | 165 | 10 | 36 | 333 | 73 | 393 | 1.78e-63 | 206 |
| MS.gene033013.t1 | AT5G22020 | 38.415 | 328 | 165 | 10 | 36 | 333 | 73 | 393 | 1.78e-63 | 206 |
| MS.gene033013.t1 | AT5G22020 | 38.415 | 328 | 165 | 10 | 36 | 333 | 73 | 393 | 1.78e-63 | 206 |
| MS.gene033013.t1 | AT3G57020 | 40.244 | 246 | 139 | 2 | 25 | 270 | 40 | 277 | 7.28e-61 | 199 |
| MS.gene033013.t1 | AT2G41290 | 38.226 | 327 | 162 | 11 | 38 | 330 | 51 | 371 | 1.40e-57 | 191 |
| MS.gene033013.t1 | AT3G57020 | 38.211 | 246 | 130 | 2 | 25 | 270 | 40 | 263 | 3.29e-56 | 186 |
| MS.gene033013.t1 | AT2G41300 | 34.268 | 321 | 175 | 7 | 33 | 326 | 73 | 384 | 6.34e-55 | 184 |
| MS.gene033013.t1 | AT3G59530 | 37.652 | 247 | 146 | 3 | 29 | 270 | 75 | 318 | 1.29e-53 | 181 |
| MS.gene033013.t1 | AT3G59530 | 37.652 | 247 | 146 | 3 | 29 | 270 | 75 | 318 | 1.29e-53 | 181 |
| MS.gene033013.t1 | AT3G59530 | 37.652 | 247 | 146 | 3 | 29 | 270 | 75 | 318 | 1.29e-53 | 181 |
| MS.gene033013.t1 | AT3G51440 | 30.043 | 233 | 138 | 7 | 39 | 270 | 70 | 278 | 2.76e-22 | 96.7 |
| MS.gene033013.t1 | AT3G51420 | 27.089 | 347 | 193 | 15 | 16 | 331 | 40 | 357 | 5.71e-21 | 92.8 |
| MS.gene033013.t1 | AT3G51430 | 33.526 | 173 | 107 | 5 | 99 | 270 | 113 | 278 | 4.38e-19 | 87.4 |
| MS.gene033013.t1 | AT3G51430 | 32.948 | 173 | 108 | 5 | 99 | 270 | 113 | 278 | 7.97e-19 | 86.7 |
| MS.gene033013.t1 | AT3G51450 | 32.948 | 173 | 108 | 5 | 99 | 270 | 113 | 278 | 2.85e-18 | 85.1 |
Find 84 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCAGGAGGCCAATTT+TGG | 0.196374 | 8.4:-17477377 | MS.gene033013:CDS |
| TATGTAGCTGATGCTTATTT+TGG | 0.237520 | 8.4:-17478168 | MS.gene033013:CDS |
| TACTAACTGATATCCAAAAT+TGG | 0.256590 | 8.4:+17477364 | None:intergenic |
| GAATTCCTCTTGATGTTATC+TGG | 0.291665 | 8.4:+17477393 | None:intergenic |
| GCAATATGTGGAAGACCTTT+AGG | 0.300362 | 8.4:-17478222 | MS.gene033013:CDS |
| GATAACATCAAGAGGAATTC+AGG | 0.341738 | 8.4:-17477390 | MS.gene033013:CDS |
| AAATATGTTGGTTCAAATGA+AGG | 0.369592 | 8.4:-17478609 | MS.gene033013:CDS |
| CTTGATGTTATCTGGTCTTC+CGG | 0.376966 | 8.4:+17477401 | None:intergenic |
| ATCGGCAAACATAGTTGAAT+TGG | 0.376978 | 8.4:+17478086 | None:intergenic |
| AACTATGTTTGCCGATGGTT+TGG | 0.379978 | 8.4:-17478079 | MS.gene033013:CDS |
| TGAGTTGCATTCCCACCATT+GGG | 0.382610 | 8.4:+17478129 | None:intergenic |
| GAATTATTCATGCTACTTGC+CGG | 0.383828 | 8.4:-17477420 | MS.gene033013:CDS |
| TGAACCTCACTAGCCGCTTC+AGG | 0.389938 | 8.4:+17477231 | None:intergenic |
| AGTGGCAGTGGAGATAATTC+AGG | 0.393936 | 8.4:-17477615 | MS.gene033013:CDS |
| GTGTCTCTTGTTGAAGAGTA+TGG | 0.394726 | 8.4:-17477255 | MS.gene033013:CDS |
| TTCTTAGCAACACTGTTGTT+TGG | 0.400149 | 8.4:+17477562 | None:intergenic |
| GGATGTTCTACTTTACCTTC+AGG | 0.402383 | 8.4:-17477315 | MS.gene033013:CDS |
| TGTGGAAGACCTTTAGGATT+GGG | 0.405892 | 8.4:-17478216 | MS.gene033013:CDS |
| GGTGTTAGAGTGAATGAAAA+TGG | 0.407349 | 8.4:-17477294 | MS.gene033013:CDS |
| GAGTACAATGGAACTCTCTA+TGG | 0.416296 | 8.4:-17477207 | MS.gene033013:CDS |
| TGCTTGGATCATATCTCAAT+AGG | 0.426890 | 8.4:+17477589 | None:intergenic |
| TTGAGTTGCATTCCCACCAT+TGG | 0.429082 | 8.4:+17478128 | None:intergenic |
| GTAGAACATCCTGGAGATCT+TGG | 0.431021 | 8.4:+17477327 | None:intergenic |
| ACTGTTGTTTGGTTGGTGCT+TGG | 0.443361 | 8.4:+17477573 | None:intergenic |
| TGCCACTAGCTAGCACTGTC+TGG | 0.451035 | 8.4:+17477631 | None:intergenic |
| CGATGGTTTGGATGTAGATC+CGG | 0.453120 | 8.4:-17478067 | MS.gene033013:CDS |
| TGGTTCAAATGAAGGTTTCA+AGG | 0.454128 | 8.4:-17478601 | MS.gene033013:CDS |
| GATATATATATTTACCTGTT+GGG | 0.457747 | 8.4:+17478561 | None:intergenic |
| CTGAAGCTTGTTCAGTAATA+CGG | 0.466301 | 8.4:+17478722 | None:intergenic |
| AGAAATCTTACAGTGCCATC+TGG | 0.470622 | 8.4:-17477543 | MS.gene033013:CDS |
| CTTGTTAAGGTTGGCCCCAA+TGG | 0.472047 | 8.4:-17478144 | MS.gene033013:CDS |
| AGTAATACGGCTACCGATGA+TGG | 0.472632 | 8.4:+17478735 | None:intergenic |
| AAGGTCTTCCACATATTGCT+TGG | 0.472662 | 8.4:+17478226 | None:intergenic |
| TTAGGGACACCAAGATCTCC+AGG | 0.481801 | 8.4:-17477336 | MS.gene033013:CDS |
| ATGCTTACACTTCTCCCAAC+AGG | 0.489728 | 8.4:-17478575 | MS.gene033013:intron |
| GTTAAGGTTGGCCCCAATGG+TGG | 0.492288 | 8.4:-17478141 | MS.gene033013:CDS |
| ATGTGGAAGACCTTTAGGAT+TGG | 0.494905 | 8.4:-17478217 | MS.gene033013:CDS |
| TCAGGTCCTGTCACTGGTGG+TGG | 0.498527 | 8.4:+17478696 | None:intergenic |
| TAGCAACACTGTTGTTTGGT+TGG | 0.501427 | 8.4:+17477566 | None:intergenic |
| AAATAAACGACTCCAGTGTC+CGG | 0.502679 | 8.4:+17478048 | None:intergenic |
| GGGAATGCAACTCAATTAGT+TGG | 0.502687 | 8.4:-17478120 | MS.gene033013:CDS |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.505698 | 8.4:+17478690 | None:intergenic |
| ACAGTGCTAGCTAGTGGCAG+TGG | 0.507863 | 8.4:-17477627 | MS.gene033013:CDS |
| TCATTCACTCTAACACCTGA+AGG | 0.522134 | 8.4:+17477300 | None:intergenic |
| GGAGTGGCAGTAAGCAAAGA+TGG | 0.525475 | 8.4:-17477522 | MS.gene033013:CDS |
| CTATCAAATGCAAGTGACTC+AGG | 0.525659 | 8.4:+17478678 | None:intergenic |
| CCATCAGAAGAAGTAACATA+AGG | 0.525792 | 8.4:+17478642 | None:intergenic |
| TCTACTGCGTTCTCCATCAT+CGG | 0.525948 | 8.4:-17478748 | MS.gene033013:CDS |
| CCTTATGTTACTTCTTCTGA+TGG | 0.527626 | 8.4:-17478642 | MS.gene033013:CDS |
| GACAGTGACAACCATCGACT+TGG | 0.528736 | 8.4:+17478788 | None:intergenic |
| TCACTTGCATTTGATAGAAA+CGG | 0.530670 | 8.4:-17478672 | MS.gene033013:CDS |
| ATTCAGCAAGTGTGGTTGAA+AGG | 0.531972 | 8.4:-17477462 | MS.gene033013:CDS |
| AGGTTGCATAAGAAGCAAGC+AGG | 0.532375 | 8.4:+17477178 | None:intergenic |
| TCAATAGTCCAAGCAATATG+TGG | 0.535464 | 8.4:-17478234 | MS.gene033013:CDS |
| AATTCTGATGAATTTGCTCT+CGG | 0.549648 | 8.4:+17477438 | None:intergenic |
| CAGCTACCACCACCAGTGAC+AGG | 0.551193 | 8.4:-17478702 | MS.gene033013:CDS |
| TTGCTTACTGCCACTCCAGA+TGG | 0.551639 | 8.4:+17477528 | None:intergenic |
| GACTCAGGTCCTGTCACTGG+TGG | 0.566671 | 8.4:+17478693 | None:intergenic |
| GAAGGTAAAGTAGAACATCC+TGG | 0.568828 | 8.4:+17477318 | None:intergenic |
| AATTCAACTATGTTTGCCGA+TGG | 0.570302 | 8.4:-17478084 | MS.gene033013:CDS |
| TAATACCATGTCCAAGTCGA+TGG | 0.572475 | 8.4:-17478799 | None:intergenic |
| TTAAGGTTGGCCCCAATGGT+GGG | 0.574022 | 8.4:-17478140 | MS.gene033013:CDS |
| TTGGATGTAGATCCGGACAC+TGG | 0.580301 | 8.4:-17478060 | MS.gene033013:CDS |
| TGATTGAAACCCAATCCTAA+AGG | 0.582627 | 8.4:+17478207 | None:intergenic |
| CAAACAGAATTCAGCAAGTG+TGG | 0.586097 | 8.4:-17477470 | MS.gene033013:CDS |
| AACACTCTAGGGAGTAAATG+AGG | 0.589798 | 8.4:+17477158 | None:intergenic |
| TGGTCCTGAAGCGGCTAGTG+AGG | 0.589941 | 8.4:-17477235 | MS.gene033013:CDS |
| ATAGTTGAATTGGCTTGTGT+TGG | 0.592154 | 8.4:+17478096 | None:intergenic |
| AGGAATAGAACAATCTGTGA+TGG | 0.593479 | 8.4:-17478270 | MS.gene033013:CDS |
| CTTGTAATTAGTGCTAGCTA+TGG | 0.594103 | 8.4:+17478023 | None:intergenic |
| GGTTGCATAAGAAGCAAGCA+GGG | 0.600341 | 8.4:+17477179 | None:intergenic |
| TCTTACAGTGCCATCTGGAG+TGG | 0.604508 | 8.4:-17477538 | MS.gene033013:CDS |
| CGGATCTACATCCAAACCAT+CGG | 0.609491 | 8.4:+17478068 | None:intergenic |
| GACAACCATCGACTTGGACA+TGG | 0.613511 | 8.4:+17478794 | None:intergenic |
| TTCCAGACAGTGCTAGCTAG+TGG | 0.613754 | 8.4:-17477633 | MS.gene033013:CDS |
| GCATTTGATAGAAACGGTGG+AGG | 0.636595 | 8.4:-17478666 | MS.gene033013:CDS |
| GAGTTGCATTCCCACCATTG+GGG | 0.641897 | 8.4:+17478130 | None:intergenic |
| TACAATGGAACTCTCTATGG+TGG | 0.643869 | 8.4:-17477204 | MS.gene033013:CDS |
| CTTGCATTTGATAGAAACGG+TGG | 0.644459 | 8.4:-17478669 | MS.gene033013:CDS |
| GAAGACCAGATAACATCAAG+AGG | 0.646688 | 8.4:-17477398 | MS.gene033013:CDS |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.673039 | 8.4:-17477219 | MS.gene033013:CDS |
| TGAAGAGTATGGTCCTGAAG+CGG | 0.674281 | 8.4:-17477244 | MS.gene033013:CDS |
| GGACTATTGAGAAGTCAGCA+AGG | 0.695998 | 8.4:+17478247 | None:intergenic |
| AACATCAAGAGGAATTCAGG+AGG | 0.698815 | 8.4:-17477387 | MS.gene033013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATTATATTATTGTTTA+TGG | - | chr8.4:17478262-17478281 | MS.gene033013:CDS | 10.0% |
| !!! | TTTTTTTATTTTTTTGGTTA+AGG | - | chr8.4:17477666-17477685 | MS.gene033013:intron | 10.0% |
| !!! | AACAATTTTGTTTTTGTTTA+AGG | + | chr8.4:17477547-17477566 | None:intergenic | 15.0% |
| !!! | TGACTGTTTTTTTATTTTTT+TGG | - | chr8.4:17477660-17477679 | MS.gene033013:intron | 15.0% |
| !! | AAGCAAAAATAGAAAATAAC+AGG | + | chr8.4:17478218-17478237 | None:intergenic | 20.0% |
| !! | GATATATATATTTACCTGTT+GGG | + | chr8.4:17477398-17477417 | None:intergenic | 20.0% |
| !! | TGATATATATATTTACCTGT+TGG | + | chr8.4:17477399-17477418 | None:intergenic | 20.0% |
| !!! | ATATCAGTTAGTAGTTTTTT+AGG | - | chr8.4:17478602-17478621 | MS.gene033013:CDS | 20.0% |
| !!! | ATGATAAATTGATTCATGTT+AGG | + | chr8.4:17477437-17477456 | None:intergenic | 20.0% |
| !!! | GATATTTTATGAGAAGAAAT+GGG | + | chr8.4:17478017-17478036 | None:intergenic | 20.0% |
| !!! | TATCAGTTAGTAGTTTTTTA+GGG | - | chr8.4:17478603-17478622 | MS.gene033013:CDS | 20.0% |
| !!! | TGATATTTTATGAGAAGAAA+TGG | + | chr8.4:17478018-17478037 | None:intergenic | 20.0% |
| ! | TACTAACTGATATCCAAAAT+TGG | + | chr8.4:17478595-17478614 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTCAAATATGT+TGG | - | chr8.4:17477335-17477354 | MS.gene033013:CDS | 25.0% |
| !!! | AAATATGTTGGTTCAAATGA+AGG | - | chr8.4:17477347-17477366 | MS.gene033013:CDS | 25.0% |
| TCACTTGCATTTGATAGAAA+CGG | - | chr8.4:17477284-17477303 | MS.gene033013:CDS | 30.0% | |
| TGAATCCTACAAATTATTCG+AGG | + | chr8.4:17478246-17478265 | None:intergenic | 30.0% | |
| ! | AATTCTGATGAATTTGCTCT+CGG | + | chr8.4:17478521-17478540 | None:intergenic | 30.0% |
| ! | TATGTAGCTGATGCTTATTT+TGG | - | chr8.4:17477788-17477807 | MS.gene033013:intron | 30.0% |
| ! | TCTTTCCTCGAATAATTTGT+AGG | - | chr8.4:17478238-17478257 | MS.gene033013:CDS | 30.0% |
| !!! | TATTTTGGACTTGTTAAGGT+TGG | - | chr8.4:17477803-17477822 | MS.gene033013:intron | 30.0% |
| !!! | TGCTTATTTTGGACTTGTTA+AGG | - | chr8.4:17477799-17477818 | MS.gene033013:intron | 30.0% |
| AATTCAACTATGTTTGCCGA+TGG | - | chr8.4:17477872-17477891 | MS.gene033013:intron | 35.0% | |
| AGGAATAGAACAATCTGTGA+TGG | - | chr8.4:17477686-17477705 | MS.gene033013:intron | 35.0% | |
| ATCGGCAAACATAGTTGAAT+TGG | + | chr8.4:17477873-17477892 | None:intergenic | 35.0% | |
| CCATCAGAAGAAGTAACATA+AGG | + | chr8.4:17477317-17477336 | None:intergenic | 35.0% | |
| CTTGTAATTAGTGCTAGCTA+TGG | + | chr8.4:17477936-17477955 | None:intergenic | 35.0% | |
| GAATTCCTCTTGATGTTATC+TGG | + | chr8.4:17478566-17478585 | None:intergenic | 35.0% | |
| GATAACATCAAGAGGAATTC+AGG | - | chr8.4:17478566-17478585 | MS.gene033013:intron | 35.0% | |
| GGTGTTAGAGTGAATGAAAA+TGG | - | chr8.4:17478662-17478681 | MS.gene033013:CDS | 35.0% | |
| GTCTTCCATGTAAGATATTG+AGG | + | chr8.4:17478194-17478213 | None:intergenic | 35.0% | |
| TCAATAGTCCAAGCAATATG+TGG | - | chr8.4:17477722-17477741 | MS.gene033013:intron | 35.0% | |
| TGACAAATGTGAATGTCACT+TGG | - | chr8.4:17478286-17478305 | MS.gene033013:intron | 35.0% | |
| TGATTGAAACCCAATCCTAA+AGG | + | chr8.4:17477752-17477771 | None:intergenic | 35.0% | |
| TGCTTGGATCATATCTCAAT+AGG | + | chr8.4:17478370-17478389 | None:intergenic | 35.0% | |
| TGGTTCAAATGAAGGTTTCA+AGG | - | chr8.4:17477355-17477374 | MS.gene033013:CDS | 35.0% | |
| TTCTTAGCAACACTGTTGTT+TGG | + | chr8.4:17478397-17478416 | None:intergenic | 35.0% | |
| ! | AGGTGCTTTCTAAAAGAACA+CGG | + | chr8.4:17477527-17477546 | None:intergenic | 35.0% |
| ! | CCTTATGTTACTTCTTCTGA+TGG | - | chr8.4:17477314-17477333 | MS.gene033013:CDS | 35.0% |
| ! | CTGAAGCTTGTTCAGTAATA+CGG | + | chr8.4:17477237-17477256 | None:intergenic | 35.0% |
| ! | GAATTATTCATGCTACTTGC+CGG | - | chr8.4:17478536-17478555 | MS.gene033013:intron | 35.0% |
| !! | ATAGTTGAATTGGCTTGTGT+TGG | + | chr8.4:17477863-17477882 | None:intergenic | 35.0% |
| AAATAAACGACTCCAGTGTC+CGG | + | chr8.4:17477911-17477930 | None:intergenic | 40.0% | |
| AACATCAAGAGGAATTCAGG+AGG | - | chr8.4:17478569-17478588 | MS.gene033013:intron | 40.0% | |
| AACTATGTTTGCCGATGGTT+TGG | - | chr8.4:17477877-17477896 | MS.gene033013:intron | 40.0% | |
| AAGGTCTTCCACATATTGCT+TGG | + | chr8.4:17477733-17477752 | None:intergenic | 40.0% | |
| AGAAATCTTACAGTGCCATC+TGG | - | chr8.4:17478413-17478432 | MS.gene033013:intron | 40.0% | |
| ATTCAGCAAGTGTGGTTGAA+AGG | - | chr8.4:17478494-17478513 | MS.gene033013:intron | 40.0% | |
| CAAACAGAATTCAGCAAGTG+TGG | - | chr8.4:17478486-17478505 | MS.gene033013:intron | 40.0% | |
| CTATCAAATGCAAGTGACTC+AGG | + | chr8.4:17477281-17477300 | None:intergenic | 40.0% | |
| CTTGCATTTGATAGAAACGG+TGG | - | chr8.4:17477287-17477306 | MS.gene033013:CDS | 40.0% | |
| GAAGACCAGATAACATCAAG+AGG | - | chr8.4:17478558-17478577 | MS.gene033013:intron | 40.0% | |
| GAAGGTAAAGTAGAACATCC+TGG | + | chr8.4:17478641-17478660 | None:intergenic | 40.0% | |
| GAGTACAATGGAACTCTCTA+TGG | - | chr8.4:17478749-17478768 | MS.gene033013:CDS | 40.0% | |
| GCAATATGTGGAAGACCTTT+AGG | - | chr8.4:17477734-17477753 | MS.gene033013:intron | 40.0% | |
| GGATGTTCTACTTTACCTTC+AGG | - | chr8.4:17478641-17478660 | MS.gene033013:CDS | 40.0% | |
| GGGAATGCAACTCAATTAGT+TGG | - | chr8.4:17477836-17477855 | MS.gene033013:intron | 40.0% | |
| GTGTCTCTTGTTGAAGAGTA+TGG | - | chr8.4:17478701-17478720 | MS.gene033013:CDS | 40.0% | |
| TACAATGGAACTCTCTATGG+TGG | - | chr8.4:17478752-17478771 | MS.gene033013:CDS | 40.0% | |
| TCATTCACTCTAACACCTGA+AGG | + | chr8.4:17478659-17478678 | None:intergenic | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr8.4:17478737-17478756 | MS.gene033013:CDS | 40.0% |
| ! | CTTGATGTTATCTGGTCTTC+CGG | + | chr8.4:17478558-17478577 | None:intergenic | 40.0% |
| ! | TAGCAACACTGTTGTTTGGT+TGG | + | chr8.4:17478393-17478412 | None:intergenic | 40.0% |
| !! | ATGTGGAAGACCTTTAGGAT+TGG | - | chr8.4:17477739-17477758 | MS.gene033013:intron | 40.0% |
| !! | TGTGGAAGACCTTTAGGATT+GGG | - | chr8.4:17477740-17477759 | MS.gene033013:intron | 40.0% |
| AGGTTGCATAAGAAGCAAGC+AGG | + | chr8.4:17478781-17478800 | None:intergenic | 45.0% | |
| AGTAATACGGCTACCGATGA+TGG | + | chr8.4:17477224-17477243 | None:intergenic | 45.0% | |
| AGTGGCAGTGGAGATAATTC+AGG | - | chr8.4:17478341-17478360 | MS.gene033013:intron | 45.0% | |
| ATGCTTACACTTCTCCCAAC+AGG | - | chr8.4:17477381-17477400 | MS.gene033013:CDS | 45.0% | |
| CGGATCTACATCCAAACCAT+CGG | + | chr8.4:17477891-17477910 | None:intergenic | 45.0% | |
| GCATTTGATAGAAACGGTGG+AGG | - | chr8.4:17477290-17477309 | MS.gene033013:CDS | 45.0% | |
| GCGCACCTCAATATCTTACA+TGG | - | chr8.4:17478186-17478205 | MS.gene033013:CDS | 45.0% | |
| GGACTATTGAGAAGTCAGCA+AGG | + | chr8.4:17477712-17477731 | None:intergenic | 45.0% | |
| GGTTGCATAAGAAGCAAGCA+GGG | + | chr8.4:17478780-17478799 | None:intergenic | 45.0% | |
| GTAGAACATCCTGGAGATCT+TGG | + | chr8.4:17478632-17478651 | None:intergenic | 45.0% | |
| TCTACTGCGTTCTCCATCAT+CGG | - | chr8.4:17477208-17477227 | MS.gene033013:CDS | 45.0% | |
| TGAGTTGCATTCCCACCATT+GGG | + | chr8.4:17477830-17477849 | None:intergenic | 45.0% | |
| ! | ACTGTTGTTTGGTTGGTGCT+TGG | + | chr8.4:17478386-17478405 | None:intergenic | 45.0% |
| ! | CGATGGTTTGGATGTAGATC+CGG | - | chr8.4:17477889-17477908 | MS.gene033013:intron | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | - | chr8.4:17478579-17478598 | MS.gene033013:CDS | 45.0% |
| ! | TGAAGAGTATGGTCCTGAAG+CGG | - | chr8.4:17478712-17478731 | MS.gene033013:CDS | 45.0% |
| ! | TTGAGTTGCATTCCCACCAT+TGG | + | chr8.4:17477831-17477850 | None:intergenic | 45.0% |
| GAGTTGCATTCCCACCATTG+GGG | + | chr8.4:17477829-17477848 | None:intergenic | 50.0% | |
| GGAGTGGCAGTAAGCAAAGA+TGG | - | chr8.4:17478434-17478453 | MS.gene033013:intron | 50.0% | |
| TCTTACAGTGCCATCTGGAG+TGG | - | chr8.4:17478418-17478437 | MS.gene033013:intron | 50.0% | |
| TTAGGGACACCAAGATCTCC+AGG | - | chr8.4:17478620-17478639 | MS.gene033013:CDS | 50.0% | |
| TTCCAGACAGTGCTAGCTAG+TGG | - | chr8.4:17478323-17478342 | MS.gene033013:intron | 50.0% | |
| TTGCTTACTGCCACTCCAGA+TGG | + | chr8.4:17478431-17478450 | None:intergenic | 50.0% | |
| TTGGATGTAGATCCGGACAC+TGG | - | chr8.4:17477896-17477915 | MS.gene033013:intron | 50.0% | |
| ! | CTTGTTAAGGTTGGCCCCAA+TGG | - | chr8.4:17477812-17477831 | MS.gene033013:intron | 50.0% |
| ! | GACAGTGACAACCATCGACT+TGG | + | chr8.4:17477171-17477190 | None:intergenic | 50.0% |
| ! | TTAAGGTTGGCCCCAATGGT+GGG | - | chr8.4:17477816-17477835 | MS.gene033013:intron | 50.0% |
| ACAGTGCTAGCTAGTGGCAG+TGG | - | chr8.4:17478329-17478348 | MS.gene033013:intron | 55.0% | |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr8.4:17477269-17477288 | None:intergenic | 55.0% | |
| TGAACCTCACTAGCCGCTTC+AGG | + | chr8.4:17478728-17478747 | None:intergenic | 55.0% | |
| TGCCACTAGCTAGCACTGTC+TGG | + | chr8.4:17478328-17478347 | None:intergenic | 55.0% | |
| ! | GTTAAGGTTGGCCCCAATGG+TGG | - | chr8.4:17477815-17477834 | MS.gene033013:intron | 55.0% |
| CAGCTACCACCACCAGTGAC+AGG | - | chr8.4:17477254-17477273 | MS.gene033013:CDS | 60.0% | |
| GACTCAGGTCCTGTCACTGG+TGG | + | chr8.4:17477266-17477285 | None:intergenic | 60.0% | |
| TCAGGTCCTGTCACTGGTGG+TGG | + | chr8.4:17477263-17477282 | None:intergenic | 60.0% | |
| TGGTCCTGAAGCGGCTAGTG+AGG | - | chr8.4:17478721-17478740 | MS.gene033013:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17477164 | 17478814 | 17477164 | ID=MS.gene033013 |
| chr8.4 | mRNA | 17477164 | 17478814 | 17477164 | ID=MS.gene033013.t1;Parent=MS.gene033013 |
| chr8.4 | exon | 17478576 | 17478814 | 17478576 | ID=MS.gene033013.t1.exon1;Parent=MS.gene033013.t1 |
| chr8.4 | CDS | 17478576 | 17478814 | 17478576 | ID=cds.MS.gene033013.t1;Parent=MS.gene033013.t1 |
| chr8.4 | exon | 17478018 | 17478290 | 17478018 | ID=MS.gene033013.t1.exon2;Parent=MS.gene033013.t1 |
| chr8.4 | CDS | 17478018 | 17478290 | 17478018 | ID=cds.MS.gene033013.t1;Parent=MS.gene033013.t1 |
| chr8.4 | exon | 17477164 | 17477659 | 17477164 | ID=MS.gene033013.t1.exon3;Parent=MS.gene033013.t1 |
| chr8.4 | CDS | 17477164 | 17477659 | 17477164 | ID=cds.MS.gene033013.t1;Parent=MS.gene033013.t1 |
| Gene Sequence |
| Protein sequence |
