Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033012.t1 | XP_003609161.1 | 92.3 | 323 | 23 | 2 | 3 | 324 | 5 | 326 | 3.80E-162 | 580.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033012.t1 | P94111 | 42.5 | 325 | 167 | 9 | 7 | 319 | 6 | 322 | 8.7e-59 | 228.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033012.t1 | G7JT36 | 92.3 | 323 | 23 | 2 | 3 | 324 | 5 | 326 | 2.7e-162 | 580.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044502 | MS.gene033012 | PPI |
| MS.gene025506 | MS.gene033012 | PPI |
| MS.gene033015 | MS.gene033012 | PPI |
| MS.gene08295 | MS.gene033012 | PPI |
| MS.gene045791 | MS.gene033012 | PPI |
| MS.gene033012 | MS.gene063529 | PPI |
| MS.gene044500 | MS.gene033012 | PPI |
| MS.gene023328 | MS.gene033012 | PPI |
| MS.gene83238 | MS.gene033012 | PPI |
| MS.gene78185 | MS.gene033012 | PPI |
| MS.gene044501 | MS.gene033012 | PPI |
| MS.gene033026 | MS.gene033012 | PPI |
| MS.gene033012 | MS.gene038798 | PPI |
| MS.gene033012 | MS.gene68975 | PPI |
| MS.gene033012 | MS.gene35843 | PPI |
| MS.gene045793 | MS.gene033012 | PPI |
| MS.gene033012 | MS.gene68976 | PPI |
| MS.gene68976 | MS.gene033012 | PPI |
| MS.gene038798 | MS.gene033012 | PPI |
| MS.gene68977 | MS.gene033012 | PPI |
| MS.gene050115 | MS.gene033012 | PPI |
| MS.gene033013 | MS.gene033012 | PPI |
| MS.gene038810 | MS.gene033012 | PPI |
| MS.gene78183 | MS.gene033012 | PPI |
| MS.gene044490 | MS.gene033012 | PPI |
| MS.gene83236 | MS.gene033012 | PPI |
| MS.gene033012 | MS.gene044501 | PPI |
| MS.gene34908 | MS.gene033012 | PPI |
| MS.gene023327 | MS.gene033012 | PPI |
| MS.gene08297 | MS.gene033012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033012.t1 | MTR_4g112630 | 92.260 | 323 | 23 | 2 | 3 | 324 | 5 | 326 | 0.0 | 592 |
| MS.gene033012.t1 | MTR_4g112650 | 79.819 | 332 | 54 | 4 | 3 | 323 | 5 | 334 | 0.0 | 521 |
| MS.gene033012.t1 | MTR_4g112670 | 75.522 | 335 | 65 | 5 | 1 | 322 | 4 | 334 | 1.21e-178 | 497 |
| MS.gene033012.t1 | MTR_4g112620 | 77.370 | 327 | 36 | 3 | 1 | 323 | 8 | 300 | 7.12e-177 | 491 |
| MS.gene033012.t1 | MTR_2g058450 | 54.341 | 311 | 127 | 4 | 23 | 322 | 28 | 334 | 1.98e-107 | 317 |
| MS.gene033012.t1 | MTR_0003s0530 | 70.811 | 185 | 38 | 4 | 142 | 314 | 1 | 181 | 3.45e-82 | 248 |
| MS.gene033012.t1 | MTR_7g490330 | 43.448 | 290 | 151 | 6 | 35 | 323 | 47 | 324 | 4.15e-73 | 229 |
| MS.gene033012.t1 | MTR_2g058410 | 52.766 | 235 | 98 | 3 | 99 | 323 | 1 | 232 | 2.16e-70 | 219 |
| MS.gene033012.t1 | MTR_7g490350 | 37.771 | 323 | 158 | 7 | 35 | 322 | 53 | 367 | 3.26e-69 | 220 |
| MS.gene033012.t1 | MTR_5g091980 | 38.462 | 325 | 184 | 6 | 1 | 323 | 12 | 322 | 1.12e-67 | 215 |
| MS.gene033012.t1 | MTR_7g090320 | 38.596 | 342 | 162 | 8 | 25 | 322 | 48 | 385 | 1.47e-67 | 217 |
| MS.gene033012.t1 | MTR_7g090300 | 38.154 | 325 | 156 | 8 | 35 | 323 | 53 | 368 | 2.32e-65 | 210 |
| MS.gene033012.t1 | MTR_2g087780 | 36.550 | 342 | 168 | 8 | 22 | 322 | 60 | 393 | 5.42e-64 | 207 |
| MS.gene033012.t1 | MTR_7g090310 | 37.160 | 331 | 161 | 7 | 35 | 322 | 58 | 384 | 4.79e-62 | 202 |
| MS.gene033012.t1 | MTR_4g050190 | 35.103 | 339 | 170 | 8 | 25 | 322 | 60 | 389 | 5.38e-61 | 199 |
| MS.gene033012.t1 | MTR_2g099030 | 33.036 | 336 | 180 | 6 | 23 | 318 | 70 | 400 | 1.10e-54 | 184 |
| MS.gene033012.t1 | MTR_4g112840 | 67.327 | 101 | 30 | 1 | 169 | 269 | 56 | 153 | 2.54e-39 | 136 |
| MS.gene033012.t1 | MTR_5g077620 | 72.619 | 84 | 21 | 2 | 1 | 84 | 1 | 82 | 2.87e-34 | 122 |
| MS.gene033012.t1 | MTR_8g074210 | 39.181 | 171 | 98 | 4 | 96 | 266 | 118 | 282 | 4.12e-27 | 109 |
| MS.gene033012.t1 | MTR_8g074170 | 38.596 | 171 | 99 | 4 | 96 | 266 | 118 | 282 | 1.90e-25 | 105 |
| MS.gene033012.t1 | MTR_8g074270 | 38.012 | 171 | 100 | 4 | 96 | 266 | 118 | 282 | 3.53e-25 | 104 |
| MS.gene033012.t1 | MTR_2g042430 | 31.381 | 239 | 134 | 8 | 33 | 270 | 74 | 283 | 4.18e-24 | 101 |
| MS.gene033012.t1 | MTR_2g058430 | 50.485 | 103 | 42 | 1 | 72 | 174 | 43 | 136 | 2.25e-23 | 97.4 |
| MS.gene033012.t1 | MTR_2g042370 | 33.133 | 166 | 105 | 4 | 106 | 270 | 112 | 272 | 1.46e-20 | 91.3 |
| MS.gene033012.t1 | MTR_2g042420 | 28.033 | 239 | 142 | 8 | 33 | 270 | 55 | 264 | 7.22e-20 | 89.4 |
| MS.gene033012.t1 | MTR_8g074320 | 38.462 | 130 | 72 | 4 | 96 | 222 | 95 | 219 | 2.58e-18 | 82.8 |
| MS.gene033012.t1 | MTR_1g075865 | 40.541 | 111 | 62 | 2 | 146 | 255 | 4 | 111 | 3.49e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033012.t1 | AT1G74020 | 43.974 | 307 | 156 | 8 | 24 | 322 | 27 | 325 | 1.27e-71 | 225 |
| MS.gene033012.t1 | AT3G57030 | 40.810 | 321 | 145 | 7 | 35 | 318 | 56 | 368 | 1.09e-70 | 224 |
| MS.gene033012.t1 | AT1G74010 | 43.421 | 304 | 155 | 9 | 24 | 319 | 26 | 320 | 4.35e-69 | 218 |
| MS.gene033012.t1 | AT1G74000 | 41.311 | 305 | 167 | 7 | 24 | 322 | 29 | 327 | 1.22e-66 | 212 |
| MS.gene033012.t1 | AT3G57010 | 38.376 | 271 | 151 | 4 | 4 | 267 | 16 | 277 | 2.46e-63 | 205 |
| MS.gene033012.t1 | AT5G22020 | 37.195 | 328 | 161 | 9 | 33 | 322 | 73 | 393 | 6.78e-63 | 204 |
| MS.gene033012.t1 | AT5G22020 | 37.195 | 328 | 161 | 9 | 33 | 322 | 73 | 393 | 6.78e-63 | 204 |
| MS.gene033012.t1 | AT5G22020 | 37.195 | 328 | 161 | 9 | 33 | 322 | 73 | 393 | 6.78e-63 | 204 |
| MS.gene033012.t1 | AT1G08470 | 36.391 | 338 | 166 | 9 | 25 | 322 | 59 | 387 | 1.74e-62 | 203 |
| MS.gene033012.t1 | AT3G57020 | 40.000 | 240 | 135 | 2 | 29 | 268 | 47 | 277 | 1.14e-59 | 196 |
| MS.gene033012.t1 | AT2G41290 | 36.446 | 332 | 159 | 11 | 35 | 322 | 51 | 374 | 8.67e-59 | 193 |
| MS.gene033012.t1 | AT3G57020 | 37.917 | 240 | 126 | 2 | 29 | 268 | 47 | 263 | 7.61e-54 | 180 |
| MS.gene033012.t1 | AT2G41300 | 39.301 | 229 | 130 | 3 | 40 | 268 | 83 | 302 | 9.15e-54 | 181 |
| MS.gene033012.t1 | AT3G59530 | 36.090 | 266 | 161 | 3 | 26 | 286 | 75 | 336 | 5.15e-53 | 179 |
| MS.gene033012.t1 | AT3G59530 | 36.090 | 266 | 161 | 3 | 26 | 286 | 75 | 336 | 5.15e-53 | 179 |
| MS.gene033012.t1 | AT3G59530 | 36.090 | 266 | 161 | 3 | 26 | 286 | 75 | 336 | 5.15e-53 | 179 |
| MS.gene033012.t1 | AT3G51440 | 27.586 | 290 | 177 | 8 | 13 | 294 | 40 | 304 | 7.89e-23 | 97.8 |
| MS.gene033012.t1 | AT3G51430 | 35.028 | 177 | 106 | 5 | 96 | 271 | 113 | 281 | 2.08e-21 | 94.0 |
| MS.gene033012.t1 | AT3G51430 | 35.057 | 174 | 104 | 5 | 96 | 268 | 113 | 278 | 8.78e-21 | 92.0 |
| MS.gene033012.t1 | AT3G51450 | 30.732 | 205 | 125 | 6 | 96 | 295 | 113 | 305 | 6.21e-20 | 89.7 |
| MS.gene033012.t1 | AT3G51420 | 29.353 | 201 | 133 | 5 | 96 | 295 | 113 | 305 | 1.01e-19 | 89.0 |
Find 86 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCAAGAGGCCAATTT+TGG | 0.175988 | 8.4:-17470041 | MS.gene033012:CDS |
| TATGCAGCTGATGCTTATTA+TGG | 0.243078 | 8.4:-17470869 | MS.gene033012:CDS |
| GAATTCCTCTTTATGTTATC+TGG | 0.262678 | 8.4:+17470057 | None:intergenic |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.268148 | 8.4:+17470810 | None:intergenic |
| TATTAACTGCAATCCAAAAT+TGG | 0.282710 | 8.4:+17470028 | None:intergenic |
| AAATCTGAGGAATTTGCTTT+TGG | 0.297207 | 8.4:+17470102 | None:intergenic |
| TTGGGTTGCTTTCCCTCCAT+TGG | 0.315305 | 8.4:+17470829 | None:intergenic |
| AAATAAACGATTCCAGTGTT+TGG | 0.321439 | 8.4:+17470749 | None:intergenic |
| TGGGTTGCTTTCCCTCCATT+GGG | 0.331282 | 8.4:+17470830 | None:intergenic |
| CTGAAGCTTGTTCAGTAATA+TGG | 0.333503 | 8.4:+17471274 | None:intergenic |
| AGAAATCTTAAATTTGCATC+TGG | 0.338821 | 8.4:-17470207 | MS.gene033012:CDS |
| TAATAGTCTTACTTTGTCTT+CGG | 0.340893 | 8.4:-17470010 | MS.gene033012:CDS |
| GTCTCTCTTGTTGAAGAGTA+TGG | 0.345465 | 8.4:-17469949 | MS.gene033012:CDS |
| CTGTCAAATGCAAGAGAATC+AGG | 0.348024 | 8.4:+17471230 | None:intergenic |
| AATAGTCTTACTTTGTCTTC+GGG | 0.365443 | 8.4:-17470009 | MS.gene033012:CDS |
| GATTTATTCATGCTACTTGC+TGG | 0.370329 | 8.4:-17470084 | MS.gene033012:CDS |
| CTGTAAAACTATACCATTCT+CGG | 0.373836 | 8.4:+17469975 | None:intergenic |
| ATGCAGCTGATGCTTATTAT+GGG | 0.375296 | 8.4:-17470868 | MS.gene033012:CDS |
| ATCAGCAAACACGGTAGAAT+TGG | 0.379198 | 8.4:+17470787 | None:intergenic |
| AATAAACGATTCCAGTGTTT+GGG | 0.380124 | 8.4:+17470750 | None:intergenic |
| GCAATATGTGGAAGGCCATT+AGG | 0.400762 | 8.4:-17470923 | MS.gene033012:CDS |
| CACTGGTTAGCAGCGCTGTC+TGG | 0.406496 | 8.4:+17470298 | None:intergenic |
| TGCTTGGATCATAACTCAAT+AGG | 0.410469 | 8.4:+17470253 | None:intergenic |
| ACTGTTGTCTGGTTGTTGCT+TGG | 0.420207 | 8.4:+17470237 | None:intergenic |
| GATTTATATATTTACCTCTT+GGG | 0.420261 | 8.4:+17471113 | None:intergenic |
| TTGTGCAGGTCCAACTAATT+GGG | 0.425364 | 8.4:+17470811 | None:intergenic |
| TTCTCAGTAACACTGTTGTC+TGG | 0.431970 | 8.4:+17470226 | None:intergenic |
| GAGTACAATGGAACACTCTA+TGG | 0.432828 | 8.4:-17469898 | MS.gene033012:CDS |
| TGTGGAAGGCCATTAGGATT+GGG | 0.435505 | 8.4:-17470917 | MS.gene033012:CDS |
| TTGGGTTTCAATCATCAAAC+AGG | 0.444949 | 8.4:-17470899 | MS.gene033012:CDS |
| AGAGTATGGTCTTCTTGAAC+CGG | 0.453051 | 8.4:-17469935 | MS.gene033012:CDS |
| ATGGCCTTCCACATATTGCT+TGG | 0.453479 | 8.4:+17470927 | None:intergenic |
| CTTGTAAAGGTTGGCCCCAA+TGG | 0.461054 | 8.4:-17470845 | MS.gene033012:CDS |
| ATGTGGAAGGCCATTAGGAT+TGG | 0.461713 | 8.4:-17470918 | MS.gene033012:CDS |
| AAAACTATGCTTACTTGAGC+TGG | 0.464925 | 8.4:+17470705 | None:intergenic |
| GAAATCTTAAATTTGCATCT+GGG | 0.465666 | 8.4:-17470206 | MS.gene033012:CDS |
| TGGTCCAAGTGAAGGTTTCA+AGG | 0.466762 | 8.4:-17471153 | MS.gene033012:CDS |
| TATTATGGGCTTGTAAAGGT+TGG | 0.470412 | 8.4:-17470854 | MS.gene033012:CDS |
| CAGTAGAAAGATAGCAAGAA+TGG | 0.470940 | 8.4:+17471316 | None:intergenic |
| AGTGGCATTGGAGATAATTC+AGG | 0.481306 | 8.4:-17470279 | MS.gene033012:CDS |
| TACTCTTGAACCTCACTAGC+CGG | 0.499543 | 8.4:+17469916 | None:intergenic |
| GGGAAAGCAACCCAATTAGT+TGG | 0.500291 | 8.4:-17470821 | MS.gene033012:CDS |
| GCGCTGCTAACCAGTGGCAT+TGG | 0.502363 | 8.4:-17470291 | MS.gene033012:CDS |
| TGATTGAAACCCAATCCTAA+TGG | 0.505270 | 8.4:+17470908 | None:intergenic |
| TCTCTTGCATTTGACAGAAA+CGG | 0.511849 | 8.4:-17471224 | MS.gene033012:CDS |
| AATTCTACCGTGTTTGCTGA+TGG | 0.517101 | 8.4:-17470785 | MS.gene033012:CDS |
| TGAATTATCTCCAATGCCAC+TGG | 0.518510 | 8.4:+17470281 | None:intergenic |
| CTTGTTCAGTAATATGGCTA+TGG | 0.523436 | 8.4:+17471280 | None:intergenic |
| CCATCAGAAGAAGTAACATA+AGG | 0.525792 | 8.4:+17471194 | None:intergenic |
| CCTTATGTTACTTCTTCTGA+TGG | 0.527626 | 8.4:-17471194 | MS.gene033012:CDS |
| AAATATGTTGGTCCAAGTGA+AGG | 0.529246 | 8.4:-17471161 | MS.gene033012:CDS |
| GGTGTTAGAGTGACCGAGAA+TGG | 0.530351 | 8.4:-17469988 | MS.gene033012:CDS |
| TCAGAAATCCAAGCAATATG+TGG | 0.532707 | 8.4:-17470935 | MS.gene033012:CDS |
| TGCTTATTATGGGCTTGTAA+AGG | 0.537666 | 8.4:-17470858 | MS.gene033012:CDS |
| GGGGTGGCAGTAAGCGGAGA+TGG | 0.543707 | 8.4:-17470186 | MS.gene033012:CDS |
| ACGGTAGAATTGGCTTGTGC+AGG | 0.544655 | 8.4:+17470797 | None:intergenic |
| ATTCGGAGAGTGTGGTTGAA+AGG | 0.547509 | 8.4:-17470126 | MS.gene033012:CDS |
| TGATTGCATAAGAAGCAAGC+AGG | 0.550700 | 8.4:+17469869 | None:intergenic |
| GAAGACCAGATAACATAAAG+AGG | 0.552163 | 8.4:-17470062 | MS.gene033012:CDS |
| AGAGAATCAGGTCCTTTCAC+TGG | 0.553043 | 8.4:+17471242 | None:intergenic |
| TTAGATGTGGACCCAAACAC+TGG | 0.559091 | 8.4:-17470761 | MS.gene033012:CDS |
| AAATCTTAAATTTGCATCTG+GGG | 0.560132 | 8.4:-17470205 | MS.gene033012:CDS |
| TCAGGTCCTTTCACTGGTGA+TGG | 0.564770 | 8.4:+17471248 | None:intergenic |
| GTAAAGGTTGGCCCCAATGG+AGG | 0.566207 | 8.4:-17470842 | MS.gene033012:CDS |
| TAAAGGTTGGCCCCAATGGA+GGG | 0.566544 | 8.4:-17470841 | MS.gene033012:CDS |
| TATTCCTTGAAACCTTCACT+TGG | 0.569604 | 8.4:+17471149 | None:intergenic |
| CATTAATAATTCTATGGTGA+TGG | 0.573040 | 8.4:-17471348 | None:intergenic |
| TCTTCTTGAACCGGCTAGTG+AGG | 0.578667 | 8.4:-17469926 | MS.gene033012:CDS |
| CTAACACAATTCGGAGAGTG+TGG | 0.584118 | 8.4:-17470134 | MS.gene033012:CDS |
| GTTTGCTGATGGTTTAGATG+TGG | 0.585669 | 8.4:-17470774 | MS.gene033012:CDS |
| GGGTTGCTTTCCCTCCATTG+GGG | 0.591391 | 8.4:+17470831 | None:intergenic |
| CTGGAATTTAGTGCTAGCTA+TGG | 0.599531 | 8.4:+17470724 | None:intergenic |
| AGGAACAGGACAATCTGTGA+TGG | 0.601201 | 8.4:-17470971 | MS.gene033012:CDS |
| ATCTAAACCATCAGCAAACA+CGG | 0.601997 | 8.4:+17470778 | None:intergenic |
| GCATCTGGGGTGGCAGTAAG+CGG | 0.604290 | 8.4:-17470192 | MS.gene033012:CDS |
| TCTTAAATTTGCATCTGGGG+TGG | 0.610328 | 8.4:-17470202 | MS.gene033012:CDS |
| AAATCCAAGCAATATGTGGA+AGG | 0.615490 | 8.4:-17470931 | MS.gene033012:CDS |
| GCATTTGACAGAAACGGTGA+AGG | 0.616080 | 8.4:-17471218 | MS.gene033012:CDS |
| CAGCTACCATCACCAGTGAA+AGG | 0.618564 | 8.4:-17471254 | MS.gene033012:CDS |
| AACATAAAGAGGAATTCAAG+AGG | 0.628213 | 8.4:-17470051 | MS.gene033012:CDS |
| GATTGCATAAGAAGCAAGCA+GGG | 0.638280 | 8.4:+17469870 | None:intergenic |
| TACAATGGAACACTCTATGG+TGG | 0.656288 | 8.4:-17469895 | MS.gene033012:CDS |
| AAGTAGCATGAATAAATCTG+AGG | 0.664600 | 8.4:+17470089 | None:intergenic |
| CAGACAGCGCTGCTAACCAG+TGG | 0.665038 | 8.4:-17470297 | MS.gene033012:CDS |
| ATGCTTACACTTCTCCCAAG+AGG | 0.667804 | 8.4:-17471127 | MS.gene033012:intron |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.673039 | 8.4:-17469910 | MS.gene033012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATTACTATGTAAA+TGG | + | chr8.4:17470138-17470157 | None:intergenic | 10.0% |
| !!! | AATGATTGTTTTTTATTTTT+TGG | - | chr8.4:17470193-17470212 | MS.gene033012:CDS | 10.0% |
| !! | TGATAATTTATGAGAAAAAT+TGG | + | chr8.4:17470544-17470563 | None:intergenic | 15.0% |
| !! | TTCAATTATGTTATTGTTTA+TGG | - | chr8.4:17470762-17470781 | MS.gene033012:CDS | 15.0% |
| !! | GATTTATATATTTACCTCTT+GGG | + | chr8.4:17470080-17470099 | None:intergenic | 20.0% |
| !! | TGATTTATATATTTACCTCT+TGG | + | chr8.4:17470081-17470100 | None:intergenic | 20.0% |
| !!! | AATATTTTGCTAACACAATT+CGG | - | chr8.4:17471047-17471066 | MS.gene033012:intron | 20.0% |
| !!! | TGTTTTTTATTTTTTGGTTC+AGG | - | chr8.4:17470199-17470218 | MS.gene033012:CDS | 20.0% |
| ! | AAATCTTAAATTTGCATCTG+GGG | - | chr8.4:17470985-17471004 | MS.gene033012:intron | 25.0% |
| ! | AGAAATCTTAAATTTGCATC+TGG | - | chr8.4:17470983-17471002 | MS.gene033012:intron | 25.0% |
| ! | CTTTCTTTCCTCAAATAATT+TGG | - | chr8.4:17470735-17470754 | MS.gene033012:CDS | 25.0% |
| ! | GAAATCTTAAATTTGCATCT+GGG | - | chr8.4:17470984-17471003 | MS.gene033012:intron | 25.0% |
| ! | TATTAACTGCAATCCAAAAT+TGG | + | chr8.4:17471165-17471184 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTCAAATATGT+TGG | - | chr8.4:17470017-17470036 | MS.gene033012:CDS | 25.0% |
| !! | GTTTAGTTTCAAAATCATAG+AGG | - | chr8.4:17470799-17470818 | MS.gene033012:CDS | 25.0% |
| !! | TAATAGTCTTACTTTGTCTT+CGG | - | chr8.4:17471180-17471199 | MS.gene033012:CDS | 25.0% |
| AAATAAACGATTCCAGTGTT+TGG | + | chr8.4:17470444-17470463 | None:intergenic | 30.0% | |
| AACATAAAGAGGAATTCAAG+AGG | - | chr8.4:17471139-17471158 | MS.gene033012:CDS | 30.0% | |
| AAGTAGCATGAATAAATCTG+AGG | + | chr8.4:17471104-17471123 | None:intergenic | 30.0% | |
| AATAAACGATTCCAGTGTTT+GGG | + | chr8.4:17470443-17470462 | None:intergenic | 30.0% | |
| CTGTAAAACTATACCATTCT+CGG | + | chr8.4:17471218-17471237 | None:intergenic | 30.0% | |
| CTTTCCTCAAATAATTTGGA+GGG | - | chr8.4:17470739-17470758 | MS.gene033012:CDS | 30.0% | |
| GAATTCCTCTTTATGTTATC+TGG | + | chr8.4:17471136-17471155 | None:intergenic | 30.0% | |
| TCTTTCCTCAAATAATTTGG+AGG | - | chr8.4:17470738-17470757 | MS.gene033012:CDS | 30.0% | |
| ! | AATAGTCTTACTTTGTCTTC+GGG | - | chr8.4:17471181-17471200 | MS.gene033012:CDS | 30.0% |
| !! | AAATCTGAGGAATTTGCTTT+TGG | + | chr8.4:17471091-17471110 | None:intergenic | 30.0% |
| !!! | TTATTTTTTGGTTCAGGAAC+AGG | - | chr8.4:17470205-17470224 | MS.gene033012:CDS | 30.0% |
| AAAACTATGCTTACTTGAGC+TGG | + | chr8.4:17470488-17470507 | None:intergenic | 35.0% | |
| AAATATGTTGGTCCAAGTGA+AGG | - | chr8.4:17470029-17470048 | MS.gene033012:CDS | 35.0% | |
| AAATCCAAGCAATATGTGGA+AGG | - | chr8.4:17470259-17470278 | MS.gene033012:CDS | 35.0% | |
| ATCTAAACCATCAGCAAACA+CGG | + | chr8.4:17470415-17470434 | None:intergenic | 35.0% | |
| ATGCAGCTGATGCTTATTAT+GGG | - | chr8.4:17470322-17470341 | MS.gene033012:intron | 35.0% | |
| ATGGTCACTTGATTCATGTT+AGG | + | chr8.4:17470119-17470138 | None:intergenic | 35.0% | |
| CAGTAGAAAGATAGCAAGAA+TGG | + | chr8.4:17469877-17469896 | None:intergenic | 35.0% | |
| CCATCAGAAGAAGTAACATA+AGG | + | chr8.4:17469999-17470018 | None:intergenic | 35.0% | |
| CTTGTTCAGTAATATGGCTA+TGG | + | chr8.4:17469913-17469932 | None:intergenic | 35.0% | |
| GAAGACCAGATAACATAAAG+AGG | - | chr8.4:17471128-17471147 | MS.gene033012:CDS | 35.0% | |
| TATGCAGCTGATGCTTATTA+TGG | - | chr8.4:17470321-17470340 | MS.gene033012:intron | 35.0% | |
| TATTATGGGCTTGTAAAGGT+TGG | - | chr8.4:17470336-17470355 | MS.gene033012:intron | 35.0% | |
| TATTCCTTGAAACCTTCACT+TGG | + | chr8.4:17470044-17470063 | None:intergenic | 35.0% | |
| TCAGAAATCCAAGCAATATG+TGG | - | chr8.4:17470255-17470274 | MS.gene033012:CDS | 35.0% | |
| TCTCTTGCATTTGACAGAAA+CGG | - | chr8.4:17469966-17469985 | MS.gene033012:CDS | 35.0% | |
| TGAACCCTCCAAATTATTTG+AGG | + | chr8.4:17470746-17470765 | None:intergenic | 35.0% | |
| TGATTGAAACCCAATCCTAA+TGG | + | chr8.4:17470285-17470304 | None:intergenic | 35.0% | |
| TGCTTATTATGGGCTTGTAA+AGG | - | chr8.4:17470332-17470351 | MS.gene033012:intron | 35.0% | |
| TGCTTGGATCATAACTCAAT+AGG | + | chr8.4:17470940-17470959 | None:intergenic | 35.0% | |
| TGGTCACTTGATTCATGTTA+GGG | + | chr8.4:17470118-17470137 | None:intergenic | 35.0% | |
| TTGGGTTTCAATCATCAAAC+AGG | - | chr8.4:17470291-17470310 | MS.gene033012:CDS | 35.0% | |
| ! | CCTTATGTTACTTCTTCTGA+TGG | - | chr8.4:17469996-17470015 | MS.gene033012:CDS | 35.0% |
| ! | CTGAAGCTTGTTCAGTAATA+TGG | + | chr8.4:17469919-17469938 | None:intergenic | 35.0% |
| ! | GATTTATTCATGCTACTTGC+TGG | - | chr8.4:17471106-17471125 | MS.gene033012:intron | 35.0% |
| AGAGTATGGTCTTCTTGAAC+CGG | - | chr8.4:17471255-17471274 | MS.gene033012:CDS | 40.0% | |
| ATCAGCAAACACGGTAGAAT+TGG | + | chr8.4:17470406-17470425 | None:intergenic | 40.0% | |
| CTGGAATTTAGTGCTAGCTA+TGG | + | chr8.4:17470469-17470488 | None:intergenic | 40.0% | |
| CTGTCAAATGCAAGAGAATC+AGG | + | chr8.4:17469963-17469982 | None:intergenic | 40.0% | |
| GAGTACAATGGAACACTCTA+TGG | - | chr8.4:17471292-17471311 | MS.gene033012:CDS | 40.0% | |
| GATTGCATAAGAAGCAAGCA+GGG | + | chr8.4:17471323-17471342 | None:intergenic | 40.0% | |
| GTCTCTCTTGTTGAAGAGTA+TGG | - | chr8.4:17471241-17471260 | MS.gene033012:CDS | 40.0% | |
| TACAATGGAACACTCTATGG+TGG | - | chr8.4:17471295-17471314 | MS.gene033012:CDS | 40.0% | |
| TCTTAAATTTGCATCTGGGG+TGG | - | chr8.4:17470988-17471007 | MS.gene033012:intron | 40.0% | |
| TGAATTATCTCCAATGCCAC+TGG | + | chr8.4:17470912-17470931 | None:intergenic | 40.0% | |
| TGATTGCATAAGAAGCAAGC+AGG | + | chr8.4:17471324-17471343 | None:intergenic | 40.0% | |
| TTCTCAGTAACACTGTTGTC+TGG | + | chr8.4:17470967-17470986 | None:intergenic | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | + | chr8.4:17470382-17470401 | None:intergenic | 40.0% | |
| ! | AATTCTACCGTGTTTGCTGA+TGG | - | chr8.4:17470405-17470424 | MS.gene033012:intron | 40.0% |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr8.4:17471280-17471299 | MS.gene033012:CDS | 40.0% |
| ! | AGTGGCATTGGAGATAATTC+AGG | - | chr8.4:17470911-17470930 | MS.gene033012:CDS | 40.0% |
| ! | GGAATTCAAGAGGCCAATTT+TGG | - | chr8.4:17471149-17471168 | MS.gene033012:CDS | 40.0% |
| ! | GTTTGCTGATGGTTTAGATG+TGG | - | chr8.4:17470416-17470435 | MS.gene033012:intron | 40.0% |
| ACTGTTGTCTGGTTGTTGCT+TGG | + | chr8.4:17470956-17470975 | None:intergenic | 45.0% | |
| AGAGAATCAGGTCCTTTCAC+TGG | + | chr8.4:17469951-17469970 | None:intergenic | 45.0% | |
| AGCATGCGTCACAGATGTTA+GGG | + | chr8.4:17470701-17470720 | None:intergenic | 45.0% | |
| AGGAACAGGACAATCTGTGA+TGG | - | chr8.4:17470219-17470238 | MS.gene033012:CDS | 45.0% | |
| ATGCTTACACTTCTCCCAAG+AGG | - | chr8.4:17470063-17470082 | MS.gene033012:CDS | 45.0% | |
| ATGGCCTTCCACATATTGCT+TGG | + | chr8.4:17470266-17470285 | None:intergenic | 45.0% | |
| ATGTGGAAGGCCATTAGGAT+TGG | - | chr8.4:17470272-17470291 | MS.gene033012:CDS | 45.0% | |
| CTAACACAATTCGGAGAGTG+TGG | - | chr8.4:17471056-17471075 | MS.gene033012:intron | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | + | chr8.4:17470383-17470402 | None:intergenic | 45.0% | |
| GCAATATGTGGAAGGCCATT+AGG | - | chr8.4:17470267-17470286 | MS.gene033012:CDS | 45.0% | |
| GCATTTGACAGAAACGGTGA+AGG | - | chr8.4:17469972-17469991 | MS.gene033012:CDS | 45.0% | |
| GGGAAAGCAACCCAATTAGT+TGG | - | chr8.4:17470369-17470388 | MS.gene033012:intron | 45.0% | |
| TACTCTTGAACCTCACTAGC+CGG | + | chr8.4:17471277-17471296 | None:intergenic | 45.0% | |
| TGGTCCAAGTGAAGGTTTCA+AGG | - | chr8.4:17470037-17470056 | MS.gene033012:CDS | 45.0% | |
| TGTGGAAGGCCATTAGGATT+GGG | - | chr8.4:17470273-17470292 | MS.gene033012:CDS | 45.0% | |
| TTAGATGTGGACCCAAACAC+TGG | - | chr8.4:17470429-17470448 | MS.gene033012:intron | 45.0% | |
| ! | ATTCGGAGAGTGTGGTTGAA+AGG | - | chr8.4:17471064-17471083 | MS.gene033012:intron | 45.0% |
| CAGCTACCATCACCAGTGAA+AGG | - | chr8.4:17469936-17469955 | MS.gene033012:CDS | 50.0% | |
| GAGCATGCGTCACAGATGTT+AGG | + | chr8.4:17470702-17470721 | None:intergenic | 50.0% | |
| GCATGCGTCACAGATGTTAG+GGG | + | chr8.4:17470700-17470719 | None:intergenic | 50.0% | |
| GGTGTTAGAGTGACCGAGAA+TGG | - | chr8.4:17471202-17471221 | MS.gene033012:CDS | 50.0% | |
| TCAGGTCCTTTCACTGGTGA+TGG | + | chr8.4:17469945-17469964 | None:intergenic | 50.0% | |
| TCTTCTTGAACCGGCTAGTG+AGG | - | chr8.4:17471264-17471283 | MS.gene033012:CDS | 50.0% | |
| ! | CTTGTAAAGGTTGGCCCCAA+TGG | - | chr8.4:17470345-17470364 | MS.gene033012:intron | 50.0% |
| ! | TAAAGGTTGGCCCCAATGGA+GGG | - | chr8.4:17470349-17470368 | MS.gene033012:intron | 50.0% |
| ! | TGGGTTGCTTTCCCTCCATT+GGG | + | chr8.4:17470363-17470382 | None:intergenic | 50.0% |
| ! | TTGGGTTGCTTTCCCTCCAT+TGG | + | chr8.4:17470364-17470383 | None:intergenic | 50.0% |
| !! | ACGGTAGAATTGGCTTGTGC+AGG | + | chr8.4:17470396-17470415 | None:intergenic | 50.0% |
| ! | GGGTTGCTTTCCCTCCATTG+GGG | + | chr8.4:17470362-17470381 | None:intergenic | 55.0% |
| ! | GTAAAGGTTGGCCCCAATGG+AGG | - | chr8.4:17470348-17470367 | MS.gene033012:intron | 55.0% |
| CAGACAGCGCTGCTAACCAG+TGG | - | chr8.4:17470893-17470912 | MS.gene033012:CDS | 60.0% | |
| GCGCTGCTAACCAGTGGCAT+TGG | - | chr8.4:17470899-17470918 | MS.gene033012:CDS | 60.0% | |
| ! | CACTGGTTAGCAGCGCTGTC+TGG | + | chr8.4:17470895-17470914 | None:intergenic | 60.0% |
| ! | GCATCTGGGGTGGCAGTAAG+CGG | - | chr8.4:17470998-17471017 | MS.gene033012:intron | 60.0% |
| GGGGTGGCAGTAAGCGGAGA+TGG | - | chr8.4:17471004-17471023 | MS.gene033012:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17469855 | 17471357 | 17469855 | ID=MS.gene033012 |
| chr8.4 | mRNA | 17469855 | 17471357 | 17469855 | ID=MS.gene033012.t1;Parent=MS.gene033012 |
| chr8.4 | exon | 17471128 | 17471357 | 17471128 | ID=MS.gene033012.t1.exon1;Parent=MS.gene033012.t1 |
| chr8.4 | CDS | 17471128 | 17471357 | 17471128 | ID=cds.MS.gene033012.t1;Parent=MS.gene033012.t1 |
| chr8.4 | exon | 17470719 | 17470991 | 17470719 | ID=MS.gene033012.t1.exon2;Parent=MS.gene033012.t1 |
| chr8.4 | CDS | 17470719 | 17470991 | 17470719 | ID=cds.MS.gene033012.t1;Parent=MS.gene033012.t1 |
| chr8.4 | exon | 17469855 | 17470326 | 17469855 | ID=MS.gene033012.t1.exon3;Parent=MS.gene033012.t1 |
| chr8.4 | CDS | 17469855 | 17470326 | 17469855 | ID=cds.MS.gene033012.t1;Parent=MS.gene033012.t1 |
| Gene Sequence |
| Protein sequence |
