Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35843.t1 | XP_003609164.2 | 91.6 | 309 | 26 | 0 | 6 | 314 | 13 | 321 | 2.60E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35843.t1 | Q4V3D9 | 41.0 | 310 | 156 | 4 | 31 | 316 | 55 | 361 | 3.8e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35843.t1 | G7JT39 | 91.6 | 309 | 26 | 0 | 6 | 314 | 13 | 321 | 1.9e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35843 | MS.gene063529 | PPI |
| MS.gene025506 | MS.gene35843 | PPI |
| MS.gene044501 | MS.gene35843 | PPI |
| MS.gene033015 | MS.gene35843 | PPI |
| MS.gene08295 | MS.gene35843 | PPI |
| MS.gene045791 | MS.gene35843 | PPI |
| MS.gene044500 | MS.gene35843 | PPI |
| MS.gene023328 | MS.gene35843 | PPI |
| MS.gene83238 | MS.gene35843 | PPI |
| MS.gene68976 | MS.gene35843 | PPI |
| MS.gene78185 | MS.gene35843 | PPI |
| MS.gene033026 | MS.gene35843 | PPI |
| MS.gene045793 | MS.gene35843 | PPI |
| MS.gene033012 | MS.gene35843 | PPI |
| MS.gene038798 | MS.gene35843 | PPI |
| MS.gene68977 | MS.gene35843 | PPI |
| MS.gene050115 | MS.gene35843 | PPI |
| MS.gene033013 | MS.gene35843 | PPI |
| MS.gene038810 | MS.gene35843 | PPI |
| MS.gene78183 | MS.gene35843 | PPI |
| MS.gene044490 | MS.gene35843 | PPI |
| MS.gene83236 | MS.gene35843 | PPI |
| MS.gene34908 | MS.gene35843 | PPI |
| MS.gene023327 | MS.gene35843 | PPI |
| MS.gene08297 | MS.gene35843 | PPI |
| MS.gene35843 | MS.gene68975 | PPI |
| MS.gene044502 | MS.gene35843 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35843.t1 | MTR_4g112670 | 91.586 | 309 | 26 | 0 | 6 | 314 | 13 | 321 | 0.0 | 587 |
| MS.gene35843.t1 | MTR_4g112650 | 75.625 | 320 | 69 | 3 | 2 | 314 | 3 | 320 | 8.87e-174 | 484 |
| MS.gene35843.t1 | MTR_4g112630 | 67.913 | 321 | 83 | 3 | 2 | 314 | 3 | 311 | 3.26e-153 | 432 |
| MS.gene35843.t1 | MTR_4g112620 | 66.667 | 309 | 60 | 3 | 11 | 314 | 16 | 286 | 1.25e-141 | 402 |
| MS.gene35843.t1 | MTR_0003s0530 | 96.591 | 176 | 6 | 0 | 139 | 314 | 1 | 176 | 1.06e-121 | 348 |
| MS.gene35843.t1 | MTR_2g058450 | 53.488 | 301 | 136 | 3 | 15 | 314 | 24 | 321 | 2.28e-104 | 309 |
| MS.gene35843.t1 | MTR_7g490330 | 41.139 | 316 | 162 | 4 | 5 | 316 | 17 | 312 | 2.17e-76 | 237 |
| MS.gene35843.t1 | MTR_7g490350 | 46.983 | 232 | 120 | 1 | 31 | 262 | 52 | 280 | 7.02e-74 | 232 |
| MS.gene35843.t1 | MTR_7g090300 | 45.923 | 233 | 121 | 2 | 31 | 262 | 52 | 280 | 1.47e-69 | 221 |
| MS.gene35843.t1 | MTR_5g091980 | 39.365 | 315 | 166 | 4 | 5 | 316 | 18 | 310 | 2.31e-69 | 219 |
| MS.gene35843.t1 | MTR_2g087780 | 38.532 | 327 | 168 | 8 | 19 | 316 | 60 | 382 | 3.02e-67 | 216 |
| MS.gene35843.t1 | MTR_4g050190 | 37.346 | 324 | 169 | 7 | 22 | 316 | 60 | 378 | 7.68e-66 | 212 |
| MS.gene35843.t1 | MTR_2g058410 | 52.273 | 220 | 102 | 2 | 96 | 314 | 1 | 218 | 1.37e-65 | 206 |
| MS.gene35843.t1 | MTR_7g090320 | 36.697 | 327 | 175 | 6 | 22 | 316 | 48 | 374 | 1.09e-64 | 209 |
| MS.gene35843.t1 | MTR_7g090310 | 36.593 | 317 | 170 | 5 | 31 | 316 | 57 | 373 | 1.85e-61 | 201 |
| MS.gene35843.t1 | MTR_2g099030 | 34.251 | 327 | 186 | 5 | 20 | 318 | 70 | 395 | 2.21e-58 | 193 |
| MS.gene35843.t1 | MTR_4g112840 | 81.000 | 100 | 19 | 0 | 166 | 265 | 56 | 155 | 3.02e-51 | 167 |
| MS.gene35843.t1 | MTR_8g074170 | 33.891 | 239 | 134 | 5 | 32 | 270 | 78 | 292 | 3.42e-31 | 120 |
| MS.gene35843.t1 | MTR_8g074270 | 31.061 | 264 | 154 | 6 | 32 | 295 | 78 | 313 | 2.89e-29 | 115 |
| MS.gene35843.t1 | MTR_8g074210 | 33.766 | 231 | 129 | 5 | 30 | 260 | 76 | 282 | 3.61e-29 | 115 |
| MS.gene35843.t1 | MTR_5g077620 | 65.753 | 73 | 25 | 0 | 10 | 82 | 12 | 84 | 6.73e-27 | 103 |
| MS.gene35843.t1 | MTR_5g077620 | 71.429 | 42 | 12 | 0 | 273 | 314 | 76 | 117 | 1.25e-12 | 64.7 |
| MS.gene35843.t1 | MTR_2g042430 | 35.849 | 159 | 98 | 3 | 103 | 260 | 124 | 279 | 4.89e-24 | 101 |
| MS.gene35843.t1 | MTR_2g042370 | 31.746 | 189 | 119 | 4 | 103 | 290 | 112 | 291 | 2.37e-23 | 99.0 |
| MS.gene35843.t1 | MTR_2g042420 | 31.746 | 189 | 118 | 4 | 103 | 290 | 105 | 283 | 4.01e-23 | 98.2 |
| MS.gene35843.t1 | MTR_2g058430 | 52.941 | 85 | 40 | 0 | 85 | 169 | 50 | 134 | 9.88e-21 | 90.1 |
| MS.gene35843.t1 | MTR_8g074320 | 30.348 | 201 | 108 | 6 | 25 | 216 | 42 | 219 | 4.39e-18 | 82.0 |
| MS.gene35843.t1 | MTR_1g075865 | 37.736 | 106 | 65 | 1 | 144 | 249 | 7 | 111 | 1.55e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35843.t1 | AT3G57030 | 40.968 | 310 | 156 | 4 | 31 | 316 | 55 | 361 | 4.39e-74 | 233 |
| MS.gene35843.t1 | AT1G74020 | 43.854 | 301 | 155 | 6 | 21 | 318 | 27 | 316 | 2.20e-72 | 227 |
| MS.gene35843.t1 | AT1G74010 | 43.189 | 301 | 156 | 7 | 21 | 318 | 26 | 314 | 5.65e-70 | 221 |
| MS.gene35843.t1 | AT1G08470 | 38.509 | 322 | 167 | 6 | 22 | 316 | 59 | 376 | 7.79e-70 | 222 |
| MS.gene35843.t1 | AT3G57010 | 41.152 | 243 | 137 | 2 | 19 | 261 | 41 | 277 | 9.69e-69 | 219 |
| MS.gene35843.t1 | AT1G74000 | 41.472 | 299 | 161 | 5 | 21 | 316 | 29 | 316 | 8.62e-68 | 215 |
| MS.gene35843.t1 | AT3G57020 | 40.574 | 244 | 139 | 1 | 18 | 261 | 39 | 276 | 9.95e-67 | 214 |
| MS.gene35843.t1 | AT5G22020 | 37.117 | 326 | 174 | 7 | 18 | 316 | 61 | 382 | 1.68e-66 | 214 |
| MS.gene35843.t1 | AT5G22020 | 37.117 | 326 | 174 | 7 | 18 | 316 | 61 | 382 | 1.68e-66 | 214 |
| MS.gene35843.t1 | AT5G22020 | 37.117 | 326 | 174 | 7 | 18 | 316 | 61 | 382 | 1.68e-66 | 214 |
| MS.gene35843.t1 | AT3G57020 | 38.983 | 236 | 124 | 1 | 26 | 261 | 47 | 262 | 7.45e-61 | 198 |
| MS.gene35843.t1 | AT2G41300 | 40.265 | 226 | 129 | 1 | 37 | 262 | 83 | 302 | 3.60e-60 | 197 |
| MS.gene35843.t1 | AT2G41290 | 39.117 | 317 | 157 | 11 | 32 | 316 | 51 | 363 | 1.85e-59 | 195 |
| MS.gene35843.t1 | AT3G59530 | 37.860 | 243 | 145 | 3 | 23 | 260 | 75 | 316 | 2.94e-56 | 187 |
| MS.gene35843.t1 | AT3G59530 | 37.860 | 243 | 145 | 3 | 23 | 260 | 75 | 316 | 2.94e-56 | 187 |
| MS.gene35843.t1 | AT3G59530 | 37.860 | 243 | 145 | 3 | 23 | 260 | 75 | 316 | 2.94e-56 | 187 |
| MS.gene35843.t1 | AT3G51440 | 29.206 | 315 | 166 | 12 | 9 | 316 | 54 | 318 | 1.70e-25 | 105 |
| MS.gene35843.t1 | AT3G51430 | 28.413 | 271 | 159 | 8 | 33 | 302 | 70 | 306 | 2.29e-23 | 99.4 |
| MS.gene35843.t1 | AT3G51430 | 28.044 | 271 | 158 | 8 | 33 | 302 | 70 | 304 | 5.74e-23 | 98.2 |
| MS.gene35843.t1 | AT3G51420 | 28.428 | 299 | 163 | 14 | 9 | 302 | 54 | 306 | 2.06e-22 | 96.7 |
| MS.gene35843.t1 | AT3G51450 | 27.241 | 290 | 164 | 9 | 33 | 316 | 70 | 318 | 1.67e-21 | 94.0 |
Find 78 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCGGGAGGCCAATTT+TGG | 0.194145 | 4.1:-58343653 | MS.gene35843:CDS |
| ATCTGTCTTATTTACCTGTT+TGG | 0.222811 | 4.1:+58344411 | None:intergenic |
| GAATTCCTCTTGATGTTATT+TGG | 0.230169 | 4.1:+58343669 | None:intergenic |
| GTATGTAGCTGATGCTTATT+TGG | 0.238535 | 4.1:-58344182 | MS.gene35843:CDS |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.268148 | 4.1:+58344122 | None:intergenic |
| TCTGTCTTATTTACCTGTTT+GGG | 0.268447 | 4.1:+58344412 | None:intergenic |
| TACTATGTTTGCTGATGGTT+TGG | 0.278759 | 4.1:-58344092 | MS.gene35843:CDS |
| TATGCACTGAAATCCAAAAT+TGG | 0.298675 | 4.1:+58343640 | None:intergenic |
| TATGTAGCTGATGCTTATTT+GGG | 0.310175 | 4.1:-58344181 | MS.gene35843:CDS |
| GCATCTCTTGCTGCTGAGTA+TGG | 0.315822 | 4.1:-58343525 | MS.gene35843:CDS |
| CTTGATGTTATTTGGTCTTC+CGG | 0.329409 | 4.1:+58343677 | None:intergenic |
| ATCAGCAAACATAGTAGAAT+TGG | 0.355621 | 4.1:+58344099 | None:intergenic |
| TGCTTATTTGGGGCTTGTTA+AGG | 0.363818 | 4.1:-58344170 | MS.gene35843:CDS |
| AAATAACATCAAGAGGAATT+CGG | 0.368111 | 4.1:-58343667 | MS.gene35843:CDS |
| CTCCACTAGTTAGCAGTGTT+TGG | 0.373816 | 4.1:+58343901 | None:intergenic |
| GTCGTACGCCTTGGAGATAT+TGG | 0.400687 | 4.1:+58343597 | None:intergenic |
| GCTAACTAGTGGAGATAGTT+CGG | 0.406368 | 4.1:-58343892 | MS.gene35843:CDS |
| GCAACATGTGGAAGGCCATT+AGG | 0.408625 | 4.1:-58344235 | MS.gene35843:CDS |
| GAACTATTCATGCTACTTAC+CGG | 0.413512 | 4.1:-58343696 | MS.gene35843:CDS |
| ATGCTTATTCTTCCCCAAAC+AGG | 0.413760 | 4.1:-58344425 | MS.gene35843:intron |
| TTGTGCAGGTCCAACTAATT+GGG | 0.417683 | 4.1:+58344123 | None:intergenic |
| AAAACAATGCTTACTTGAGT+TGG | 0.418022 | 4.1:+58344017 | None:intergenic |
| AATAACATCAAGAGGAATTC+GGG | 0.422435 | 4.1:-58343666 | MS.gene35843:CDS |
| ATGGCCTTCCACATGTTGCT+TGG | 0.423208 | 4.1:+58344239 | None:intergenic |
| TGTGGAAGGCCATTAGGATT+GGG | 0.448985 | 4.1:-58344229 | MS.gene35843:CDS |
| CTAACTAGTGGAGATAGTTC+GGG | 0.455356 | 4.1:-58343891 | MS.gene35843:CDS |
| AGCAATCTTGCAATGCCATC+TGG | 0.458768 | 4.1:-58343819 | MS.gene35843:CDS |
| AAATATAATGGTCCAGATGT+AGG | 0.459994 | 4.1:-58344459 | MS.gene35843:CDS |
| ATGTGGAAGGCCATTAGGAT+TGG | 0.461713 | 4.1:-58344230 | MS.gene35843:CDS |
| TACTCTTGAACCTCACTAGC+TGG | 0.468245 | 4.1:+58343495 | None:intergenic |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 4.1:-58344492 | MS.gene35843:CDS |
| TGGTCCAGATGTAGGTTTCA+AGG | 0.477646 | 4.1:-58344451 | MS.gene35843:CDS |
| AAATAAACGATTCCAGTGTC+AGG | 0.481590 | 4.1:+58344061 | None:intergenic |
| TAGCAACACTGTCGTTTGAT+TGG | 0.481910 | 4.1:+58343842 | None:intergenic |
| TATTCCTTGAAACCTACATC+TGG | 0.482961 | 4.1:+58344447 | None:intergenic |
| TCAGGTCCTGTCACTGGTGA+TGG | 0.490699 | 4.1:+58344546 | None:intergenic |
| TTATCAAATGCAAGGGACTC+AGG | 0.499604 | 4.1:+58344528 | None:intergenic |
| TGATTGAAACCCAATCCTAA+TGG | 0.503097 | 4.1:+58344220 | None:intergenic |
| TGGGTTACATTCCCACCATC+GGG | 0.504450 | 4.1:+58344142 | None:intergenic |
| CGAGGCAAAGTCGTACGCCT+TGG | 0.506911 | 4.1:+58343588 | None:intergenic |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 4.1:+58344492 | None:intergenic |
| AGGGACTCAGGTCCTGTCAC+TGG | 0.513355 | 4.1:+58344540 | None:intergenic |
| CTTGTTAAGGTTAGTCCCGA+TGG | 0.523613 | 4.1:-58344157 | MS.gene35843:CDS |
| TTGGGTTACATTCCCACCAT+CGG | 0.524545 | 4.1:+58344141 | None:intergenic |
| ATAGTAGAATTGGCTTGTGC+AGG | 0.536515 | 4.1:+58344109 | None:intergenic |
| AATTCTACTATGTTTGCTGA+TGG | 0.537613 | 4.1:-58344097 | MS.gene35843:CDS |
| GGGAATGTAACCCAATTAGT+TGG | 0.539311 | 4.1:-58344133 | MS.gene35843:CDS |
| AGTTCCGATGAATTCGCTCT+TGG | 0.539341 | 4.1:+58343714 | None:intergenic |
| TTTGAAAATTCTTCCATCAG+AGG | 0.540669 | 4.1:+58344479 | None:intergenic |
| TTGGGTTTCAATCATCAGAC+AGG | 0.541284 | 4.1:-58344211 | MS.gene35843:CDS |
| ATTCAAAGAGTGTGGCTGAA+AGG | 0.543321 | 4.1:-58343738 | MS.gene35843:CDS |
| CTACTTACTGCCACACCAGA+TGG | 0.548108 | 4.1:+58343804 | None:intergenic |
| CTGTCTTATTTACCTGTTTG+GGG | 0.568461 | 4.1:+58344413 | None:intergenic |
| CAGCTACCATCACCAGTGAC+AGG | 0.576598 | 4.1:-58344552 | MS.gene35843:CDS |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 4.1:-58344504 | MS.gene35843:CDS |
| GAAGACCAAATAACATCAAG+AGG | 0.582125 | 4.1:-58343674 | MS.gene35843:CDS |
| ACTGTCGTTTGATTGGTGCT+AGG | 0.594902 | 4.1:+58343849 | None:intergenic |
| CAGTCCAAGCAACATGTGGA+AGG | 0.599866 | 4.1:-58344243 | MS.gene35843:CDS |
| TACCAAACACTGCTAACTAG+TGG | 0.600039 | 4.1:-58343903 | MS.gene35843:CDS |
| GTTAAGGTTAGTCCCGATGG+TGG | 0.602648 | 4.1:-58344154 | MS.gene35843:CDS |
| CAAACAAAATTCAAAGAGTG+TGG | 0.607750 | 4.1:-58343746 | MS.gene35843:CDS |
| ATGTAGCTGATGCTTATTTG+GGG | 0.608065 | 4.1:-58344180 | MS.gene35843:CDS |
| TGGTACTGAACCAGCTAGTG+AGG | 0.609133 | 4.1:-58343505 | MS.gene35843:CDS |
| AGGACCAAGAGCGAATTCAT+CGG | 0.609522 | 4.1:-58343718 | MS.gene35843:CDS |
| GGACTGCTGAGAAGTCAGTA+AGG | 0.612929 | 4.1:+58344260 | None:intergenic |
| TCTTGCAATGCCATCTGGTG+TGG | 0.621845 | 4.1:-58343814 | MS.gene35843:CDS |
| TTAAGGTTAGTCCCGATGGT+GGG | 0.629205 | 4.1:-58344153 | MS.gene35843:CDS |
| TCAGCAGTCCAAGCAACATG+TGG | 0.630269 | 4.1:-58344247 | MS.gene35843:CDS |
| TTGGAAGTTAGTGCTAGCTA+CGG | 0.633035 | 4.1:+58344036 | None:intergenic |
| GGTGTGGCAGTAAGTAGAGA+CGG | 0.639411 | 4.1:-58343798 | MS.gene35843:CDS |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.643469 | 4.1:-58343489 | MS.gene35843:CDS |
| TTTGGAATGGCAATGAAGTG+TGG | 0.662268 | 4.1:-58345110 | None:intergenic |
| TAGGACTGCCAATATCTCCA+AGG | 0.665475 | 4.1:-58343605 | MS.gene35843:CDS |
| AGGAACAAGACAGTCTGTGA+CGG | 0.667480 | 4.1:-58344283 | MS.gene35843:CDS |
| TTGGATGTAGATCCTGACAC+TGG | 0.674256 | 4.1:-58344073 | MS.gene35843:CDS |
| AACATCAAGAGGAATTCGGG+AGG | 0.694290 | 4.1:-58343663 | MS.gene35843:CDS |
| TCAGACACTTTGACTCCGCG+AGG | 0.697616 | 4.1:+58343570 | None:intergenic |
| AGGCGTACGACTTTGCCTCG+CGG | 0.705525 | 4.1:-58343585 | MS.gene35843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACAATATAATAAGTA+TGG | - | chr4.1:58343651-58343670 | MS.gene35843:CDS | 10.0% |
| !!! | TTTTCTTAAAAATTTATTGA+TGG | - | chr4.1:58343770-58343789 | MS.gene35843:CDS | 10.0% |
| !! | AATATAAAGAGTAACTTAAA+TGG | + | chr4.1:58343577-58343596 | None:intergenic | 15.0% |
| !! | ATATAAAGAGTAACTTAAAT+GGG | + | chr4.1:58343576-58343595 | None:intergenic | 15.0% |
| !!! | ACATTACTTTATTTTTTGTA+GGG | - | chr4.1:58344637-58344656 | MS.gene35843:intron | 15.0% |
| !!! | ATTTAAGTTACTCTTTATAT+TGG | - | chr4.1:58343576-58343595 | MS.gene35843:CDS | 15.0% |
| !!! | TAGTACTTTTACAAAATAAA+CGG | + | chr4.1:58344203-58344222 | None:intergenic | 15.0% |
| !!! | TTTAAGTTACTCTTTATATT+GGG | - | chr4.1:58343577-58343596 | MS.gene35843:CDS | 15.0% |
| !! | ATGGCTTACTATATTTAATT+AGG | - | chr4.1:58343789-58343808 | MS.gene35843:CDS | 20.0% |
| !! | TTGTTATAGTAATGTAGAAT+TGG | + | chr4.1:58344611-58344630 | None:intergenic | 20.0% |
| !!! | CACATTACTTTATTTTTTGT+AGG | - | chr4.1:58344636-58344655 | MS.gene35843:intron | 20.0% |
| !!! | GAGAAATGATTTTTTTATCT+TGG | - | chr4.1:58344256-58344275 | MS.gene35843:CDS | 20.0% |
| !!! | GGAAGAATTTTCAAATATAA+TGG | - | chr4.1:58344094-58344113 | MS.gene35843:CDS | 20.0% |
| ! | AAATAACATCAAGAGGAATT+CGG | - | chr4.1:58344898-58344917 | MS.gene35843:intron | 25.0% |
| !!! | TATTGGGCTTTTTCTAAATT+TGG | - | chr4.1:58343593-58343612 | MS.gene35843:CDS | 25.0% |
| !!! | TGATTTTTTTATCTTGGATC+AGG | - | chr4.1:58344262-58344281 | MS.gene35843:CDS | 25.0% |
| AAAACAATGCTTACTTGAGT+TGG | + | chr4.1:58344551-58344570 | None:intergenic | 30.0% | |
| AAAGAGTAACTTAAATGGGT+CGG | + | chr4.1:58343572-58343591 | None:intergenic | 30.0% | |
| AAATATAATGGTCCAGATGT+AGG | - | chr4.1:58344106-58344125 | MS.gene35843:CDS | 30.0% | |
| AATAACATCAAGAGGAATTC+GGG | - | chr4.1:58344899-58344918 | MS.gene35843:intron | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | + | chr4.1:58343983-58344002 | None:intergenic | 30.0% | |
| AGTAGCAATTCTCAATTCAT+TGG | + | chr4.1:58343624-58343643 | None:intergenic | 30.0% | |
| ATCAGCAAACATAGTAGAAT+TGG | + | chr4.1:58344469-58344488 | None:intergenic | 30.0% | |
| CAAACAAAATTCAAAGAGTG+TGG | - | chr4.1:58344819-58344838 | MS.gene35843:intron | 30.0% | |
| GAATTCCTCTTGATGTTATT+TGG | + | chr4.1:58344899-58344918 | None:intergenic | 30.0% | |
| GTAATGTAGAATTGGCATTT+AGG | + | chr4.1:58344603-58344622 | None:intergenic | 30.0% | |
| GTAGCAATTCTCAATTCATT+GGG | + | chr4.1:58343623-58343642 | None:intergenic | 30.0% | |
| GTTGAAGAAGATAGATGATT+GGG | - | chr4.1:58343524-58343543 | MS.gene35843:CDS | 30.0% | |
| TATGCACTGAAATCCAAAAT+TGG | + | chr4.1:58344928-58344947 | None:intergenic | 30.0% | |
| TATGTAGCTGATGCTTATTT+GGG | - | chr4.1:58344384-58344403 | MS.gene35843:intron | 30.0% | |
| TCCCTTGCATTTGATAAAAA+CGG | - | chr4.1:58344043-58344062 | MS.gene35843:CDS | 30.0% | |
| TTTGAAAATTCTTCCATCAG+AGG | + | chr4.1:58344089-58344108 | None:intergenic | 30.0% | |
| ! | AATTCTACTATGTTTGCTGA+TGG | - | chr4.1:58344468-58344487 | MS.gene35843:CDS | 30.0% |
| ! | ATTTCAGTGCATAGTGTTTT+AGG | - | chr4.1:58344935-58344954 | MS.gene35843:intron | 30.0% |
| !! | ACCGTTTTTATCAAATGCAA+GGG | + | chr4.1:58344047-58344066 | None:intergenic | 30.0% |
| !! | ATCTGTCTTATTTACCTGTT+TGG | + | chr4.1:58344157-58344176 | None:intergenic | 30.0% |
| !! | TCTGTCTTATTTACCTGTTT+GGG | + | chr4.1:58344156-58344175 | None:intergenic | 30.0% |
| AAACGGTCACTTAACTCATT+AGG | + | chr4.1:58344186-58344205 | None:intergenic | 35.0% | |
| AAATAAACGATTCCAGTGTC+AGG | + | chr4.1:58344507-58344526 | None:intergenic | 35.0% | |
| AAGAAGATAGATGATTGGGT+TGG | - | chr4.1:58343528-58343547 | MS.gene35843:CDS | 35.0% | |
| AAGAGTAACTTAAATGGGTC+GGG | + | chr4.1:58343571-58343590 | None:intergenic | 35.0% | |
| ACATAATTCGCAATTCGCAT+CGG | + | chr4.1:58343917-58343936 | None:intergenic | 35.0% | |
| AGAAGAATTCGATACGTGTA+GGG | + | chr4.1:58343857-58343876 | None:intergenic | 35.0% | |
| AGAAGATAGATGATTGGGTT+GGG | - | chr4.1:58343529-58343548 | MS.gene35843:CDS | 35.0% | |
| ATGTAGCTGATGCTTATTTG+GGG | - | chr4.1:58344385-58344404 | MS.gene35843:intron | 35.0% | |
| GAAGACCAAATAACATCAAG+AGG | - | chr4.1:58344891-58344910 | MS.gene35843:intron | 35.0% | |
| GCATTTGATAAAAACGGTGA+AGG | - | chr4.1:58344049-58344068 | MS.gene35843:CDS | 35.0% | |
| GGTTGAAGAAGATAGATGAT+TGG | - | chr4.1:58343523-58343542 | MS.gene35843:CDS | 35.0% | |
| GTATGTAGCTGATGCTTATT+TGG | - | chr4.1:58344383-58344402 | MS.gene35843:intron | 35.0% | |
| TAGAAGAATTCGATACGTGT+AGG | + | chr4.1:58343858-58343877 | None:intergenic | 35.0% | |
| TATTCCTTGAAACCTACATC+TGG | + | chr4.1:58344121-58344140 | None:intergenic | 35.0% | |
| TGATTGAAACCCAATCCTAA+TGG | + | chr4.1:58344348-58344367 | None:intergenic | 35.0% | |
| ! | CATTTTTCTGCGTTTTCTTG+CGG | - | chr4.1:58343481-58343500 | MS.gene35843:CDS | 35.0% |
| ! | CTTGATGTTATTTGGTCTTC+CGG | + | chr4.1:58344891-58344910 | None:intergenic | 35.0% |
| ! | GAACTATTCATGCTACTTAC+CGG | - | chr4.1:58344869-58344888 | MS.gene35843:intron | 35.0% |
| ! | TACTATGTTTGCTGATGGTT+TGG | - | chr4.1:58344473-58344492 | MS.gene35843:CDS | 35.0% |
| !! | CACCGTTTTTATCAAATGCA+AGG | + | chr4.1:58344048-58344067 | None:intergenic | 35.0% |
| !! | CTGTCTTATTTACCTGTTTG+GGG | + | chr4.1:58344155-58344174 | None:intergenic | 35.0% |
| !!! | GTGCATAGTGTTTTAGGATT+AGG | - | chr4.1:58344941-58344960 | MS.gene35843:intron | 35.0% |
| ATGCTTATTCTTCCCCAAAC+AGG | - | chr4.1:58344140-58344159 | MS.gene35843:CDS | 40.0% | |
| CTAACTAGTGGAGATAGTTC+GGG | - | chr4.1:58344674-58344693 | MS.gene35843:intron | 40.0% | |
| GAAGAATTCGATACGTGTAG+GGG | + | chr4.1:58343856-58343875 | None:intergenic | 40.0% | |
| GCTAACTAGTGGAGATAGTT+CGG | - | chr4.1:58344673-58344692 | MS.gene35843:intron | 40.0% | |
| GGGAATGTAACCCAATTAGT+TGG | - | chr4.1:58344432-58344451 | MS.gene35843:CDS | 40.0% | |
| TACCAAACACTGCTAACTAG+TGG | - | chr4.1:58344662-58344681 | MS.gene35843:intron | 40.0% | |
| TTATCAAATGCAAGGGACTC+AGG | + | chr4.1:58344040-58344059 | None:intergenic | 40.0% | |
| TTGGAAGTTAGTGCTAGCTA+CGG | + | chr4.1:58344532-58344551 | None:intergenic | 40.0% | |
| TTGGGTTTCAATCATCAGAC+AGG | - | chr4.1:58344354-58344373 | MS.gene35843:intron | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | + | chr4.1:58344445-58344464 | None:intergenic | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr4.1:58345076-58345095 | MS.gene35843:CDS | 40.0% |
| ! | ATTCAAAGAGTGTGGCTGAA+AGG | - | chr4.1:58344827-58344846 | MS.gene35843:intron | 40.0% |
| ! | TAGCAACACTGTCGTTTGAT+TGG | + | chr4.1:58344726-58344745 | None:intergenic | 40.0% |
| !! | ATAGTAGAATTGGCTTGTGC+AGG | + | chr4.1:58344459-58344478 | None:intergenic | 40.0% |
| !! | GGGCTTTTTCTAAATTTGGC+TGG | - | chr4.1:58343597-58343616 | MS.gene35843:CDS | 40.0% |
| !! | TGCTTATTTGGGGCTTGTTA+AGG | - | chr4.1:58344395-58344414 | MS.gene35843:intron | 40.0% |
| AACATCAAGAGGAATTCGGG+AGG | - | chr4.1:58344902-58344921 | MS.gene35843:intron | 45.0% | |
| AACGGTGAAGGACCTTATGT+TGG | - | chr4.1:58344061-58344080 | MS.gene35843:CDS | 45.0% | |
| AGCAATCTTGCAATGCCATC+TGG | - | chr4.1:58344746-58344765 | MS.gene35843:intron | 45.0% | |
| AGGAACAAGACAGTCTGTGA+CGG | - | chr4.1:58344282-58344301 | MS.gene35843:CDS | 45.0% | |
| AGGACCAAGAGCGAATTCAT+CGG | - | chr4.1:58344847-58344866 | MS.gene35843:intron | 45.0% | |
| AGTTCCGATGAATTCGCTCT+TGG | + | chr4.1:58344854-58344873 | None:intergenic | 45.0% | |
| ATGTGGAAGGCCATTAGGAT+TGG | - | chr4.1:58344335-58344354 | MS.gene35843:intron | 45.0% | |
| CTCCACTAGTTAGCAGTGTT+TGG | + | chr4.1:58344667-58344686 | None:intergenic | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | + | chr4.1:58344446-58344465 | None:intergenic | 45.0% | |
| TACTCTTGAACCTCACTAGC+TGG | + | chr4.1:58345073-58345092 | None:intergenic | 45.0% | |
| TAGGACTGCCAATATCTCCA+AGG | - | chr4.1:58344960-58344979 | MS.gene35843:intron | 45.0% | |
| TATAGAGCTTCGGTACGCTT+CGG | + | chr4.1:58343833-58343852 | None:intergenic | 45.0% | |
| TGGTCCAGATGTAGGTTTCA+AGG | - | chr4.1:58344114-58344133 | MS.gene35843:CDS | 45.0% | |
| TGTGGAAGGCCATTAGGATT+GGG | - | chr4.1:58344336-58344355 | MS.gene35843:intron | 45.0% | |
| TTGGATGTAGATCCTGACAC+TGG | - | chr4.1:58344492-58344511 | MS.gene35843:CDS | 45.0% | |
| TTGGGTTACATTCCCACCAT+CGG | + | chr4.1:58344427-58344446 | None:intergenic | 45.0% | |
| ! | ACTGTCGTTTGATTGGTGCT+AGG | + | chr4.1:58344719-58344738 | None:intergenic | 45.0% |
| ! | CTTGTTAAGGTTAGTCCCGA+TGG | - | chr4.1:58344408-58344427 | MS.gene35843:intron | 45.0% |
| ! | TTAAGGTTAGTCCCGATGGT+GGG | - | chr4.1:58344412-58344431 | MS.gene35843:intron | 45.0% |
| ATGGCCTTCCACATGTTGCT+TGG | + | chr4.1:58344329-58344348 | None:intergenic | 50.0% | |
| CAGTCCAAGCAACATGTGGA+AGG | - | chr4.1:58344322-58344341 | MS.gene35843:intron | 50.0% | |
| CCATCAGAGGAGCCAACATA+AGG | + | chr4.1:58344076-58344095 | None:intergenic | 50.0% | |
| CTACTTACTGCCACACCAGA+TGG | + | chr4.1:58344764-58344783 | None:intergenic | 50.0% | |
| GCAACATGTGGAAGGCCATT+AGG | - | chr4.1:58344330-58344349 | MS.gene35843:intron | 50.0% | |
| GCATCTCTTGCTGCTGAGTA+TGG | - | chr4.1:58345040-58345059 | MS.gene35843:intron | 50.0% | |
| GGACTGCTGAGAAGTCAGTA+AGG | + | chr4.1:58344308-58344327 | None:intergenic | 50.0% | |
| GGTGTGGCAGTAAGTAGAGA+CGG | - | chr4.1:58344767-58344786 | MS.gene35843:intron | 50.0% | |
| GTCGTACGCCTTGGAGATAT+TGG | + | chr4.1:58344971-58344990 | None:intergenic | 50.0% | |
| TCAGCAGTCCAAGCAACATG+TGG | - | chr4.1:58344318-58344337 | MS.gene35843:intron | 50.0% | |
| TCTTGCAATGCCATCTGGTG+TGG | - | chr4.1:58344751-58344770 | MS.gene35843:intron | 50.0% | |
| TGGGTTACATTCCCACCATC+GGG | + | chr4.1:58344426-58344445 | None:intergenic | 50.0% | |
| ! | CGTGTAGGGGTATAGAGCTT+CGG | + | chr4.1:58343843-58343862 | None:intergenic | 50.0% |
| ! | GGAATTCGGGAGGCCAATTT+TGG | - | chr4.1:58344912-58344931 | MS.gene35843:intron | 50.0% |
| ! | GGCTGCAGCTTTGTGTTGTT+AGG | - | chr4.1:58343502-58343521 | MS.gene35843:CDS | 50.0% |
| ! | GTTAAGGTTAGTCCCGATGG+TGG | - | chr4.1:58344411-58344430 | MS.gene35843:intron | 50.0% |
| ! | TGGTACTGAACCAGCTAGTG+AGG | - | chr4.1:58345060-58345079 | MS.gene35843:intron | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | - | chr4.1:58344073-58344092 | MS.gene35843:CDS | 50.0% |
| CAGCTACCATCACCAGTGAC+AGG | - | chr4.1:58344013-58344032 | MS.gene35843:intron | 55.0% | |
| TCAGACACTTTGACTCCGCG+AGG | + | chr4.1:58344998-58345017 | None:intergenic | 55.0% | |
| TCAGGTCCTGTCACTGGTGA+TGG | + | chr4.1:58344022-58344041 | None:intergenic | 55.0% | |
| ! | ATTCGCATCGGTACGCGGTA+CGG | + | chr4.1:58343905-58343924 | None:intergenic | 55.0% |
| ! | TCGCAATTCGCATCGGTACG+CGG | + | chr4.1:58343910-58343929 | None:intergenic | 55.0% |
| AGGCGTACGACTTTGCCTCG+CGG | - | chr4.1:58344980-58344999 | MS.gene35843:intron | 60.0% | |
| AGGGACTCAGGTCCTGTCAC+TGG | + | chr4.1:58344028-58344047 | None:intergenic | 60.0% | |
| ATCGGTACGCGGTACGGGTA+CGG | + | chr4.1:58343899-58343918 | None:intergenic | 60.0% | |
| CGAGGCAAAGTCGTACGCCT+TGG | + | chr4.1:58344980-58344999 | None:intergenic | 60.0% | |
| ! | TTCGCATCGGTACGCGGTAC+GGG | + | chr4.1:58343904-58343923 | None:intergenic | 60.0% |
| TCGGTACGCGGTACGGGTAC+GGG | + | chr4.1:58343898-58343917 | None:intergenic | 65.0% | |
| GCGGTACGGGTACGGGTTCG+CGG | + | chr4.1:58343891-58343910 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 58343467 | 58345120 | 58343467 | ID=MS.gene35843 |
| chr4.1 | mRNA | 58343467 | 58345120 | 58343467 | ID=MS.gene35843.t1;Parent=MS.gene35843 |
| chr4.1 | exon | 58345069 | 58345120 | 58345069 | ID=MS.gene35843.t1.exon1;Parent=MS.gene35843.t1 |
| chr4.1 | CDS | 58345069 | 58345120 | 58345069 | ID=cds.MS.gene35843.t1;Parent=MS.gene35843.t1 |
| chr4.1 | exon | 58344426 | 58344594 | 58344426 | ID=MS.gene35843.t1.exon2;Parent=MS.gene35843.t1 |
| chr4.1 | CDS | 58344426 | 58344594 | 58344426 | ID=cds.MS.gene35843.t1;Parent=MS.gene35843.t1 |
| chr4.1 | exon | 58344031 | 58344303 | 58344031 | ID=MS.gene35843.t1.exon3;Parent=MS.gene35843.t1 |
| chr4.1 | CDS | 58344031 | 58344303 | 58344031 | ID=cds.MS.gene35843.t1;Parent=MS.gene35843.t1 |
| chr4.1 | exon | 58343467 | 58343929 | 58343467 | ID=MS.gene35843.t1.exon4;Parent=MS.gene35843.t1 |
| chr4.1 | CDS | 58343467 | 58343929 | 58343467 | ID=cds.MS.gene35843.t1;Parent=MS.gene35843.t1 |
| Gene Sequence |
| Protein sequence |
