Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038798.t1 | XP_003609164.2 | 96.4 | 336 | 12 | 0 | 1 | 336 | 1 | 336 | 3.50E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038798.t1 | Q4V3D9 | 40.8 | 321 | 163 | 4 | 38 | 334 | 55 | 372 | 5.1e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038798.t1 | G7JT39 | 96.4 | 336 | 12 | 0 | 1 | 336 | 1 | 336 | 2.5e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08295 | MS.gene038798 | PPI |
| MS.gene045791 | MS.gene038798 | PPI |
| MS.gene023328 | MS.gene038798 | PPI |
| MS.gene68976 | MS.gene038798 | PPI |
| MS.gene78185 | MS.gene038798 | PPI |
| MS.gene033026 | MS.gene038798 | PPI |
| MS.gene038798 | MS.gene063529 | PPI |
| MS.gene045793 | MS.gene038798 | PPI |
| MS.gene033012 | MS.gene038798 | PPI |
| MS.gene038810 | MS.gene038798 | PPI |
| MS.gene038798 | MS.gene68975 | PPI |
| MS.gene78183 | MS.gene038798 | PPI |
| MS.gene044490 | MS.gene038798 | PPI |
| MS.gene68977 | MS.gene038798 | PPI |
| MS.gene050115 | MS.gene038798 | PPI |
| MS.gene83236 | MS.gene038798 | PPI |
| MS.gene033013 | MS.gene038798 | PPI |
| MS.gene34908 | MS.gene038798 | PPI |
| MS.gene038798 | MS.gene35843 | PPI |
| MS.gene038798 | MS.gene033012 | PPI |
| MS.gene038798 | MS.gene68976 | PPI |
| MS.gene023327 | MS.gene038798 | PPI |
| MS.gene08297 | MS.gene038798 | PPI |
| MS.gene044500 | MS.gene038798 | PPI |
| MS.gene044502 | MS.gene038798 | PPI |
| MS.gene83238 | MS.gene038798 | PPI |
| MS.gene025506 | MS.gene038798 | PPI |
| MS.gene044501 | MS.gene038798 | PPI |
| MS.gene038798 | MS.gene044501 | PPI |
| MS.gene033015 | MS.gene038798 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038798.t1 | MTR_4g112670 | 96.429 | 336 | 12 | 0 | 1 | 336 | 1 | 336 | 0.0 | 660 |
| MS.gene038798.t1 | MTR_4g112650 | 77.910 | 335 | 70 | 2 | 2 | 334 | 1 | 333 | 0.0 | 529 |
| MS.gene038798.t1 | MTR_4g112630 | 70.833 | 336 | 83 | 2 | 2 | 334 | 1 | 324 | 4.07e-171 | 478 |
| MS.gene038798.t1 | MTR_4g112620 | 69.231 | 338 | 61 | 4 | 1 | 334 | 1 | 299 | 6.50e-161 | 451 |
| MS.gene038798.t1 | MTR_0003s0530 | 96.133 | 181 | 7 | 0 | 146 | 326 | 1 | 181 | 2.75e-124 | 355 |
| MS.gene038798.t1 | MTR_2g058450 | 54.545 | 308 | 137 | 2 | 27 | 333 | 28 | 333 | 2.11e-110 | 325 |
| MS.gene038798.t1 | MTR_7g490330 | 40.909 | 330 | 169 | 4 | 11 | 334 | 14 | 323 | 8.46e-79 | 244 |
| MS.gene038798.t1 | MTR_7g490350 | 39.441 | 322 | 162 | 3 | 39 | 334 | 53 | 367 | 6.15e-78 | 243 |
| MS.gene038798.t1 | MTR_5g091980 | 39.067 | 343 | 177 | 4 | 2 | 334 | 1 | 321 | 1.76e-74 | 233 |
| MS.gene038798.t1 | MTR_7g090300 | 40.938 | 320 | 160 | 5 | 39 | 334 | 53 | 367 | 9.84e-73 | 229 |
| MS.gene038798.t1 | MTR_2g058410 | 53.879 | 232 | 104 | 2 | 103 | 333 | 1 | 230 | 1.25e-71 | 222 |
| MS.gene038798.t1 | MTR_2g087780 | 38.462 | 338 | 175 | 8 | 26 | 334 | 60 | 393 | 8.36e-71 | 226 |
| MS.gene038798.t1 | MTR_4g050190 | 37.313 | 335 | 176 | 7 | 29 | 334 | 60 | 389 | 1.36e-69 | 222 |
| MS.gene038798.t1 | MTR_7g090320 | 38.323 | 334 | 174 | 7 | 29 | 330 | 48 | 381 | 4.30e-69 | 221 |
| MS.gene038798.t1 | MTR_7g090310 | 38.245 | 319 | 166 | 5 | 39 | 326 | 58 | 376 | 1.94e-65 | 211 |
| MS.gene038798.t1 | MTR_2g099030 | 34.132 | 334 | 191 | 5 | 27 | 332 | 70 | 402 | 1.64e-61 | 202 |
| MS.gene038798.t1 | MTR_4g112840 | 78.000 | 100 | 22 | 0 | 173 | 272 | 56 | 155 | 1.06e-49 | 164 |
| MS.gene038798.t1 | MTR_5g077620 | 74.419 | 86 | 20 | 2 | 4 | 89 | 1 | 84 | 1.60e-34 | 124 |
| MS.gene038798.t1 | MTR_5g077620 | 69.767 | 43 | 13 | 0 | 280 | 322 | 76 | 118 | 3.99e-13 | 66.2 |
| MS.gene038798.t1 | MTR_8g074170 | 33.891 | 239 | 134 | 5 | 39 | 277 | 78 | 292 | 3.13e-31 | 121 |
| MS.gene038798.t1 | MTR_8g074210 | 34.199 | 231 | 128 | 5 | 37 | 267 | 76 | 282 | 3.28e-29 | 115 |
| MS.gene038798.t1 | MTR_8g074270 | 31.061 | 264 | 154 | 6 | 39 | 302 | 78 | 313 | 3.49e-29 | 115 |
| MS.gene038798.t1 | MTR_2g042420 | 29.675 | 246 | 149 | 9 | 110 | 334 | 105 | 347 | 1.69e-24 | 102 |
| MS.gene038798.t1 | MTR_2g042430 | 36.478 | 159 | 97 | 3 | 110 | 267 | 124 | 279 | 3.26e-24 | 102 |
| MS.gene038798.t1 | MTR_2g042370 | 31.746 | 189 | 119 | 4 | 110 | 297 | 112 | 291 | 1.39e-23 | 100 |
| MS.gene038798.t1 | MTR_2g058430 | 48.515 | 101 | 43 | 1 | 76 | 176 | 43 | 134 | 7.55e-21 | 90.9 |
| MS.gene038798.t1 | MTR_8g074320 | 36.364 | 143 | 84 | 5 | 84 | 223 | 81 | 219 | 2.66e-18 | 82.8 |
| MS.gene038798.t1 | MTR_1g075865 | 38.095 | 105 | 64 | 1 | 151 | 255 | 7 | 110 | 1.24e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038798.t1 | AT3G57030 | 40.810 | 321 | 163 | 4 | 38 | 334 | 55 | 372 | 1.79e-78 | 244 |
| MS.gene038798.t1 | AT1G74020 | 43.042 | 309 | 162 | 6 | 28 | 333 | 27 | 324 | 9.37e-75 | 234 |
| MS.gene038798.t1 | AT1G08470 | 38.438 | 333 | 174 | 6 | 29 | 334 | 59 | 387 | 3.39e-74 | 234 |
| MS.gene038798.t1 | AT1G74010 | 42.071 | 309 | 164 | 7 | 28 | 333 | 26 | 322 | 3.39e-72 | 227 |
| MS.gene038798.t1 | AT1G74000 | 41.100 | 309 | 168 | 6 | 28 | 333 | 29 | 326 | 1.90e-70 | 223 |
| MS.gene038798.t1 | AT3G57010 | 38.686 | 274 | 150 | 4 | 8 | 269 | 11 | 278 | 1.27e-69 | 222 |
| MS.gene038798.t1 | AT5G22020 | 36.336 | 333 | 181 | 7 | 29 | 334 | 65 | 393 | 4.48e-69 | 221 |
| MS.gene038798.t1 | AT5G22020 | 36.336 | 333 | 181 | 7 | 29 | 334 | 65 | 393 | 4.48e-69 | 221 |
| MS.gene038798.t1 | AT5G22020 | 36.336 | 333 | 181 | 7 | 29 | 334 | 65 | 393 | 4.48e-69 | 221 |
| MS.gene038798.t1 | AT3G57020 | 41.772 | 237 | 132 | 1 | 33 | 269 | 47 | 277 | 2.94e-67 | 216 |
| MS.gene038798.t1 | AT2G41290 | 39.329 | 328 | 163 | 10 | 39 | 334 | 51 | 374 | 4.49e-64 | 207 |
| MS.gene038798.t1 | AT3G57020 | 39.241 | 237 | 124 | 1 | 33 | 269 | 47 | 263 | 1.93e-61 | 200 |
| MS.gene038798.t1 | AT2G41300 | 34.314 | 306 | 171 | 3 | 46 | 327 | 85 | 384 | 1.59e-60 | 199 |
| MS.gene038798.t1 | AT3G59530 | 38.683 | 243 | 143 | 3 | 30 | 267 | 75 | 316 | 5.15e-57 | 190 |
| MS.gene038798.t1 | AT3G59530 | 38.683 | 243 | 143 | 3 | 30 | 267 | 75 | 316 | 5.15e-57 | 190 |
| MS.gene038798.t1 | AT3G59530 | 38.683 | 243 | 143 | 3 | 30 | 267 | 75 | 316 | 5.15e-57 | 190 |
| MS.gene038798.t1 | AT3G51420 | 27.193 | 342 | 199 | 13 | 17 | 332 | 40 | 357 | 6.20e-26 | 106 |
| MS.gene038798.t1 | AT3G51440 | 28.339 | 307 | 168 | 9 | 17 | 310 | 40 | 307 | 1.64e-25 | 105 |
| MS.gene038798.t1 | AT3G51430 | 27.922 | 308 | 183 | 10 | 40 | 330 | 70 | 355 | 6.05e-24 | 101 |
| MS.gene038798.t1 | AT3G51430 | 27.778 | 306 | 184 | 10 | 40 | 330 | 70 | 353 | 8.44e-24 | 100 |
| MS.gene038798.t1 | AT3G51450 | 27.536 | 276 | 155 | 8 | 40 | 309 | 70 | 306 | 1.65e-22 | 97.4 |
Find 85 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCAGGAGGCCAATTT+TGG | 0.191849 | 8.3:-14696152 | MS.gene038798:CDS |
| GAATTCCTCTTGATGTTATT+TGG | 0.192006 | 8.3:+14696168 | None:intergenic |
| AAATATTTGGTTACCTGTTT+GGG | 0.218850 | 8.3:+14697067 | None:intergenic |
| GTATGTAGCTGATGCTTATT+TGG | 0.238535 | 8.3:-14696681 | MS.gene038798:CDS |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.268148 | 8.3:+14696621 | None:intergenic |
| TACTATGTTTGCTGATGGTT+TGG | 0.278759 | 8.3:-14696591 | MS.gene038798:CDS |
| GAAATATTTGGTTACCTGTT+TGG | 0.293285 | 8.3:+14697066 | None:intergenic |
| CTCTTTGAATTCTGTTTGAT+AGG | 0.295137 | 8.3:+14696250 | None:intergenic |
| TATGCACTGAAATCCAAAAT+TGG | 0.298675 | 8.3:+14696139 | None:intergenic |
| TATGTAGCTGATGCTTATTT+GGG | 0.310175 | 8.3:-14696680 | MS.gene038798:CDS |
| ATTGGCAATCATGTTGAATA+TGG | 0.317723 | 8.3:-14697310 | None:intergenic |
| AATAACATCAAGAGGAATTC+AGG | 0.320309 | 8.3:-14696165 | MS.gene038798:CDS |
| GCATCTCTTGCTGCTGAGTA+TGG | 0.329022 | 8.3:-14696024 | MS.gene038798:CDS |
| CTTGATGTTATTTGGTCTTC+CGG | 0.329409 | 8.3:+14696176 | None:intergenic |
| CAAACAGAATTCAAAGAGTA+TGG | 0.337397 | 8.3:-14696245 | MS.gene038798:CDS |
| TGCTTATTTGGGGCTTGTTA+AGG | 0.363818 | 8.3:-14696669 | MS.gene038798:CDS |
| CTCCACTAGTTAGCAGTGTT+TGG | 0.373816 | 8.3:+14696400 | None:intergenic |
| GCCGTACGCCTTGGAGATAT+TGG | 0.389151 | 8.3:+14696096 | None:intergenic |
| GCTAACTAGTGGAGATAGTT+CGG | 0.406368 | 8.3:-14696391 | MS.gene038798:CDS |
| ATGGCCTTCCACATGTTGCT+TGG | 0.406831 | 8.3:+14696738 | None:intergenic |
| AAAACTATGCTTACTTGAGT+TGG | 0.411787 | 8.3:+14696516 | None:intergenic |
| GAACTATTCATGCTACTTAC+CGG | 0.417163 | 8.3:-14696195 | MS.gene038798:CDS |
| ATGTGGAAGGCCATTGGGAT+TGG | 0.422735 | 8.3:-14696729 | MS.gene038798:CDS |
| TTGTGCAGGTCCAACTAATT+GGG | 0.424324 | 8.3:+14696622 | None:intergenic |
| TGTGGAAGGCCATTGGGATT+GGG | 0.424460 | 8.3:-14696728 | MS.gene038798:CDS |
| TGCTTAGCAACACCGTCGTT+TGG | 0.427505 | 8.3:+14696337 | None:intergenic |
| CCTTATGTTGGCTCTTCTGA+TGG | 0.452393 | 8.3:-14697147 | MS.gene038798:CDS |
| CTAACTAGTGGAGATAGTTC+GGG | 0.455356 | 8.3:-14696390 | MS.gene038798:CDS |
| AGCAATCTTGCAATGCCATC+TGG | 0.458768 | 8.3:-14696318 | MS.gene038798:CDS |
| AAATATAATGGTCCAGATGT+AGG | 0.459994 | 8.3:-14697114 | MS.gene038798:CDS |
| TACTCTTGAACCTCACTAGC+TGG | 0.468245 | 8.3:+14695994 | None:intergenic |
| ATGCTTACACTTCCCCAAAC+AGG | 0.470526 | 8.3:-14697080 | MS.gene038798:intron |
| GCAACATGTGGAAGGCCATT+GGG | 0.471213 | 8.3:-14696734 | MS.gene038798:CDS |
| AGCAACATGTGGAAGGCCAT+TGG | 0.477074 | 8.3:-14696735 | MS.gene038798:CDS |
| TGGTCCAGATGTAGGTTTCA+AGG | 0.477646 | 8.3:-14697106 | MS.gene038798:CDS |
| ATAGTAGAATTTGCTTGTGC+AGG | 0.478071 | 8.3:+14696608 | None:intergenic |
| TGCTAGCATAAGAAGCGAGC+AGG | 0.478207 | 8.3:+14695947 | None:intergenic |
| TATTCCTTGAAACCTACATC+TGG | 0.482961 | 8.3:+14697102 | None:intergenic |
| GCCAATATCTCCAAGGCGTA+CGG | 0.490469 | 8.3:-14696097 | MS.gene038798:CDS |
| CGAGGCAAAGCCGTACGCCT+TGG | 0.490601 | 8.3:+14696087 | None:intergenic |
| TGGGTTACATTCCCTCCATC+GGG | 0.492632 | 8.3:+14696641 | None:intergenic |
| AAATAAACGATTCCAGTGTC+GGG | 0.501133 | 8.3:+14696560 | None:intergenic |
| AGTAATATAGCTACTGATGA+TGG | 0.504220 | 8.3:+14697240 | None:intergenic |
| ACCGTCGTTTGGTTGGTGCT+AGG | 0.509218 | 8.3:+14696348 | None:intergenic |
| TACAATGGAAAACTCTATGC+TGG | 0.510601 | 8.3:-14695973 | MS.gene038798:CDS |
| CCATCAGAAGAGCCAACATA+AGG | 0.510617 | 8.3:+14697147 | None:intergenic |
| TTGGGTTACATTCCCTCCAT+CGG | 0.513844 | 8.3:+14696640 | None:intergenic |
| TTATCAAATGCAAGTGACTC+AGG | 0.517239 | 8.3:+14697183 | None:intergenic |
| GGGAATGTAACCCAATTAGT+TGG | 0.517432 | 8.3:-14696632 | MS.gene038798:CDS |
| AAAATAAACGATTCCAGTGT+CGG | 0.518978 | 8.3:+14696559 | None:intergenic |
| CTTGTTAAGGTTAGTCCCGA+TGG | 0.524295 | 8.3:-14696656 | MS.gene038798:CDS |
| TAGCAACACCGTCGTTTGGT+TGG | 0.526062 | 8.3:+14696341 | None:intergenic |
| TCAGGTCCTGTCACTGGTGA+TGG | 0.530888 | 8.3:+14697201 | None:intergenic |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.531219 | 8.3:+14697195 | None:intergenic |
| TTGGGTTTCAATCATCAGAC+AGG | 0.541284 | 8.3:-14696710 | MS.gene038798:CDS |
| ATTCAAAGAGTATGGCTGAC+AGG | 0.543963 | 8.3:-14696237 | MS.gene038798:CDS |
| AATTCTACTATGTTTGCTGA+TGG | 0.545049 | 8.3:-14696596 | MS.gene038798:CDS |
| GGTGTGGCAGTAAGCAAAGA+TGG | 0.552392 | 8.3:-14696297 | MS.gene038798:CDS |
| TTGCTTACTGCCACACCAGA+TGG | 0.555964 | 8.3:+14696303 | None:intergenic |
| AGTTCTGATGAATTTGCTCT+CGG | 0.557854 | 8.3:+14696213 | None:intergenic |
| GCTAGCATAAGAAGCGAGCA+GGG | 0.568395 | 8.3:+14695948 | None:intergenic |
| CAGCTACCATCACCAGTGAC+AGG | 0.576598 | 8.3:-14697207 | MS.gene038798:CDS |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 8.3:-14697159 | MS.gene038798:CDS |
| GAAGACCAAATAACATCAAG+AGG | 0.582125 | 8.3:-14696173 | MS.gene038798:CDS |
| TTGGATGTAGATCCCGACAC+TGG | 0.588568 | 8.3:-14696572 | MS.gene038798:CDS |
| CAGTCCAAGCAACATGTGGA+AGG | 0.599866 | 8.3:-14696742 | MS.gene038798:CDS |
| TACCAAACACTGCTAACTAG+TGG | 0.600039 | 8.3:-14696402 | MS.gene038798:CDS |
| GGACTGCTGAGAACTCAGTA+AGG | 0.605713 | 8.3:+14696759 | None:intergenic |
| GTTAAGGTTAGTCCCGATGG+AGG | 0.606836 | 8.3:-14696653 | MS.gene038798:CDS |
| ATGTAGCTGATGCTTATTTG+GGG | 0.608065 | 8.3:-14696679 | MS.gene038798:CDS |
| TGGTACTGAACCAGCTAGTG+AGG | 0.609133 | 8.3:-14696004 | MS.gene038798:CDS |
| AGGCGTACGGCTTTGCCTCG+CGG | 0.610626 | 8.3:-14696084 | MS.gene038798:CDS |
| TCTTGCAATGCCATCTGGTG+TGG | 0.621845 | 8.3:-14696313 | MS.gene038798:CDS |
| TTAAGGTTAGTCCCGATGGA+GGG | 0.624076 | 8.3:-14696652 | MS.gene038798:CDS |
| AATATTTGGTTACCTGTTTG+GGG | 0.628872 | 8.3:+14697068 | None:intergenic |
| AGGAACAAGACAGTCTGTGA+TGG | 0.630492 | 8.3:-14696782 | MS.gene038798:CDS |
| TCAGCAGTCCAAGCAACATG+TGG | 0.632752 | 8.3:-14696746 | MS.gene038798:CDS |
| TTGGAAGTTAGTGCTAGCTA+CGG | 0.633035 | 8.3:+14696535 | None:intergenic |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.643469 | 8.3:-14695988 | MS.gene038798:CDS |
| AATCATGTTGAATATGGCAA+TGG | 0.647554 | 8.3:-14697304 | None:intergenic |
| TAGGACTGCCAATATCTCCA+AGG | 0.665475 | 8.3:-14696104 | MS.gene038798:CDS |
| AACATCAAGAGGAATTCAGG+AGG | 0.674601 | 8.3:-14696162 | MS.gene038798:CDS |
| TGATTGAAACCCAATCCCAA+TGG | 0.679756 | 8.3:+14696719 | None:intergenic |
| TCCTAGCACCAACCAAACGA+CGG | 0.704747 | 8.3:-14696349 | MS.gene038798:CDS |
| TCAGACACTCTGACTCCGCG+AGG | 0.747022 | 8.3:+14696069 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTTTTTTTTTATCT+TGG | - | chr8.3:14696425-14696444 | MS.gene038798:intron | 10.0% |
| !! | TATTTGGTAAAAACAAAAAA+TGG | - | chr8.3:14696395-14696414 | MS.gene038798:CDS | 15.0% |
| !!! | ACTTTACTTTATTTTTTGTA+GGG | - | chr8.3:14696806-14696825 | MS.gene038798:intron | 15.0% |
| !!! | AGAATCATTATTTTCTTATT+TGG | - | chr8.3:14696379-14696398 | MS.gene038798:CDS | 15.0% |
| !!! | TACTTTACTTTATTTTTTGT+AGG | - | chr8.3:14696805-14696824 | MS.gene038798:intron | 15.0% |
| !!! | TAGTACTTTTTCAAAATAAA+TGG | + | chr8.3:14696242-14696261 | None:intergenic | 15.0% |
| !!! | GGAAGAATTTTCAAATATAA+TGG | - | chr8.3:14696107-14696126 | MS.gene038798:CDS | 20.0% |
| !!! | TTTTTTTTTTATCTTGGATC+AGG | - | chr8.3:14696431-14696450 | MS.gene038798:intron | 20.0% |
| ! | AAATATTTGGTTACCTGTTT+GGG | + | chr8.3:14696169-14696188 | None:intergenic | 25.0% |
| ! | TCACTTGCATTTGATAAAAA+CGG | - | chr8.3:14696056-14696075 | MS.gene038798:CDS | 25.0% |
| ! | TTGTTATAGTAATGCAGAAT+TGG | + | chr8.3:14696780-14696799 | None:intergenic | 25.0% |
| !! | TCTTATGCTAGCATTTTTAT+CGG | - | chr8.3:14697296-14697315 | MS.gene038798:CDS | 25.0% |
| !!! | TAGTTGATGAGTGAAATATT+TGG | + | chr8.3:14696182-14696201 | None:intergenic | 25.0% |
| AAAACTATGCTTACTTGAGT+TGG | + | chr8.3:14696720-14696739 | None:intergenic | 30.0% | |
| AAAATAAACGATTCCAGTGT+CGG | + | chr8.3:14696677-14696696 | None:intergenic | 30.0% | |
| AAATATAATGGTCCAGATGT+AGG | - | chr8.3:14696119-14696138 | MS.gene038798:CDS | 30.0% | |
| AAATGGTCACTTAACTCATT+AGG | + | chr8.3:14696225-14696244 | None:intergenic | 30.0% | |
| AATAACATCAAGAGGAATTC+AGG | - | chr8.3:14697068-14697087 | MS.gene038798:intron | 30.0% | |
| AATATTTGGTTACCTGTTTG+GGG | + | chr8.3:14696168-14696187 | None:intergenic | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | + | chr8.3:14695996-14696015 | None:intergenic | 30.0% | |
| CAAACAGAATTCAAAGAGTA+TGG | - | chr8.3:14696988-14697007 | MS.gene038798:intron | 30.0% | |
| CTCTTTGAATTCTGTTTGAT+AGG | + | chr8.3:14696986-14697005 | None:intergenic | 30.0% | |
| GAAATATTTGGTTACCTGTT+TGG | + | chr8.3:14696170-14696189 | None:intergenic | 30.0% | |
| GAATTCCTCTTGATGTTATT+TGG | + | chr8.3:14697068-14697087 | None:intergenic | 30.0% | |
| TATGCACTGAAATCCAAAAT+TGG | + | chr8.3:14697097-14697116 | None:intergenic | 30.0% | |
| TATGTAGCTGATGCTTATTT+GGG | - | chr8.3:14696553-14696572 | MS.gene038798:CDS | 30.0% | |
| ! | AATTCTACTATGTTTGCTGA+TGG | - | chr8.3:14696637-14696656 | MS.gene038798:CDS | 30.0% |
| ! | ATTTCAGTGCATAGTGTTTT+AGG | - | chr8.3:14697104-14697123 | MS.gene038798:CDS | 30.0% |
| AAATAAACGATTCCAGTGTC+GGG | + | chr8.3:14696676-14696695 | None:intergenic | 35.0% | |
| ATATAAACACGAAGTTCGTG+AGG | + | chr8.3:14696359-14696378 | None:intergenic | 35.0% | |
| ATGTAGCTGATGCTTATTTG+GGG | - | chr8.3:14696554-14696573 | MS.gene038798:CDS | 35.0% | |
| GAAGACCAAATAACATCAAG+AGG | - | chr8.3:14697060-14697079 | MS.gene038798:intron | 35.0% | |
| GCATTTGATAAAAACGGTGA+AGG | - | chr8.3:14696062-14696081 | MS.gene038798:CDS | 35.0% | |
| GTAATGCAGAATTGGCATTT+AGG | + | chr8.3:14696772-14696791 | None:intergenic | 35.0% | |
| GTATGTAGCTGATGCTTATT+TGG | - | chr8.3:14696552-14696571 | MS.gene038798:CDS | 35.0% | |
| TACAATGGAAAACTCTATGC+TGG | - | chr8.3:14697260-14697279 | MS.gene038798:CDS | 35.0% | |
| TATTCCTTGAAACCTACATC+TGG | + | chr8.3:14696134-14696153 | None:intergenic | 35.0% | |
| TTATCAAATGCAAGTGACTC+AGG | + | chr8.3:14696053-14696072 | None:intergenic | 35.0% | |
| ! | AGTTCTGATGAATTTGCTCT+CGG | + | chr8.3:14697023-14697042 | None:intergenic | 35.0% |
| ! | ATAGTAGAATTTGCTTGTGC+AGG | + | chr8.3:14696628-14696647 | None:intergenic | 35.0% |
| ! | CTTGATGTTATTTGGTCTTC+CGG | + | chr8.3:14697060-14697079 | None:intergenic | 35.0% |
| ! | GAACTATTCATGCTACTTAC+CGG | - | chr8.3:14697038-14697057 | MS.gene038798:intron | 35.0% |
| ! | TACTATGTTTGCTGATGGTT+TGG | - | chr8.3:14696642-14696661 | MS.gene038798:CDS | 35.0% |
| !!! | GTGCATAGTGTTTTAGGATT+AGG | - | chr8.3:14697110-14697129 | MS.gene038798:CDS | 35.0% |
| AACATCAAGAGGAATTCAGG+AGG | - | chr8.3:14697071-14697090 | MS.gene038798:intron | 40.0% | |
| CTAACTAGTGGAGATAGTTC+GGG | - | chr8.3:14696843-14696862 | MS.gene038798:intron | 40.0% | |
| GCTAACTAGTGGAGATAGTT+CGG | - | chr8.3:14696842-14696861 | MS.gene038798:intron | 40.0% | |
| GGGAATGTAACCCAATTAGT+TGG | - | chr8.3:14696601-14696620 | MS.gene038798:CDS | 40.0% | |
| TACCAAACACTGCTAACTAG+TGG | - | chr8.3:14696831-14696850 | MS.gene038798:intron | 40.0% | |
| TGATTGAAACCCAATCCCAA+TGG | + | chr8.3:14696517-14696536 | None:intergenic | 40.0% | |
| TTGGAAGTTAGTGCTAGCTA+CGG | + | chr8.3:14696701-14696720 | None:intergenic | 40.0% | |
| TTGGGTTTCAATCATCAGAC+AGG | - | chr8.3:14696523-14696542 | MS.gene038798:intron | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | + | chr8.3:14696614-14696633 | None:intergenic | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr8.3:14697245-14697264 | MS.gene038798:CDS | 40.0% |
| ! | ATTCAAAGAGTATGGCTGAC+AGG | - | chr8.3:14696996-14697015 | MS.gene038798:intron | 40.0% |
| !! | TGCTTATTTGGGGCTTGTTA+AGG | - | chr8.3:14696564-14696583 | MS.gene038798:CDS | 40.0% |
| AACGGTGAAGGACCTTATGT+TGG | - | chr8.3:14696074-14696093 | MS.gene038798:CDS | 45.0% | |
| AGCAATCTTGCAATGCCATC+TGG | - | chr8.3:14696915-14696934 | MS.gene038798:intron | 45.0% | |
| AGGAACAAGACAGTCTGTGA+TGG | - | chr8.3:14696451-14696470 | MS.gene038798:intron | 45.0% | |
| ATGCTTACACTTCCCCAAAC+AGG | - | chr8.3:14696153-14696172 | MS.gene038798:CDS | 45.0% | |
| CCATCAGAAGAGCCAACATA+AGG | + | chr8.3:14696089-14696108 | None:intergenic | 45.0% | |
| CTCCACTAGTTAGCAGTGTT+TGG | + | chr8.3:14696836-14696855 | None:intergenic | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | + | chr8.3:14696615-14696634 | None:intergenic | 45.0% | |
| TACTCTTGAACCTCACTAGC+TGG | + | chr8.3:14697242-14697261 | None:intergenic | 45.0% | |
| TAGGACTGCCAATATCTCCA+AGG | - | chr8.3:14697129-14697148 | MS.gene038798:CDS | 45.0% | |
| TGGTCCAGATGTAGGTTTCA+AGG | - | chr8.3:14696127-14696146 | MS.gene038798:CDS | 45.0% | |
| TTGGGTTACATTCCCTCCAT+CGG | + | chr8.3:14696596-14696615 | None:intergenic | 45.0% | |
| ! | CTTGTTAAGGTTAGTCCCGA+TGG | - | chr8.3:14696577-14696596 | MS.gene038798:CDS | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | - | chr8.3:14697081-14697100 | MS.gene038798:CDS | 45.0% |
| ! | TTAAGGTTAGTCCCGATGGA+GGG | - | chr8.3:14696581-14696600 | MS.gene038798:CDS | 45.0% |
| !! | CCTTATGTTGGCTCTTCTGA+TGG | - | chr8.3:14696086-14696105 | MS.gene038798:CDS | 45.0% |
| !!! | AAAAGTATTAAAAAAAAAAA+CGG | + | chr8.3:14696311-14696330 | None:intergenic | 5.0% |
| AGCAACATGTGGAAGGCCAT+TGG | - | chr8.3:14696498-14696517 | MS.gene038798:intron | 50.0% | |
| ATGGCCTTCCACATGTTGCT+TGG | + | chr8.3:14696498-14696517 | None:intergenic | 50.0% | |
| ATGTGGAAGGCCATTGGGAT+TGG | - | chr8.3:14696504-14696523 | MS.gene038798:intron | 50.0% | |
| CAGTCCAAGCAACATGTGGA+AGG | - | chr8.3:14696491-14696510 | MS.gene038798:intron | 50.0% | |
| GCAACATGTGGAAGGCCATT+GGG | - | chr8.3:14696499-14696518 | MS.gene038798:intron | 50.0% | |
| GCATCTCTTGCTGCTGAGTA+TGG | - | chr8.3:14697209-14697228 | MS.gene038798:CDS | 50.0% | |
| GCCAATATCTCCAAGGCGTA+CGG | - | chr8.3:14697136-14697155 | MS.gene038798:CDS | 50.0% | |
| GCTAGCATAAGAAGCGAGCA+GGG | + | chr8.3:14697288-14697307 | None:intergenic | 50.0% | |
| GGACTGCTGAGAACTCAGTA+AGG | + | chr8.3:14696477-14696496 | None:intergenic | 50.0% | |
| GGTGTGGCAGTAAGCAAAGA+TGG | - | chr8.3:14696936-14696955 | MS.gene038798:intron | 50.0% | |
| TAGCAACACCGTCGTTTGGT+TGG | + | chr8.3:14696895-14696914 | None:intergenic | 50.0% | |
| TCAGCAGTCCAAGCAACATG+TGG | - | chr8.3:14696487-14696506 | MS.gene038798:intron | 50.0% | |
| TCCTAGCACCAACCAAACGA+CGG | - | chr8.3:14696884-14696903 | MS.gene038798:intron | 50.0% | |
| TCTTGCAATGCCATCTGGTG+TGG | - | chr8.3:14696920-14696939 | MS.gene038798:intron | 50.0% | |
| TGCTAGCATAAGAAGCGAGC+AGG | + | chr8.3:14697289-14697308 | None:intergenic | 50.0% | |
| TGCTTAGCAACACCGTCGTT+TGG | + | chr8.3:14696899-14696918 | None:intergenic | 50.0% | |
| TGGGTTACATTCCCTCCATC+GGG | + | chr8.3:14696595-14696614 | None:intergenic | 50.0% | |
| TGTGGAAGGCCATTGGGATT+GGG | - | chr8.3:14696505-14696524 | MS.gene038798:intron | 50.0% | |
| TTGCTTACTGCCACACCAGA+TGG | + | chr8.3:14696933-14696952 | None:intergenic | 50.0% | |
| TTGGATGTAGATCCCGACAC+TGG | - | chr8.3:14696661-14696680 | MS.gene038798:CDS | 50.0% | |
| ! | GTTAAGGTTAGTCCCGATGG+AGG | - | chr8.3:14696580-14696599 | MS.gene038798:CDS | 50.0% |
| ! | TGGTACTGAACCAGCTAGTG+AGG | - | chr8.3:14697229-14697248 | MS.gene038798:CDS | 50.0% |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr8.3:14696041-14696060 | None:intergenic | 55.0% | |
| CAGCTACCATCACCAGTGAC+AGG | - | chr8.3:14696026-14696045 | MS.gene038798:CDS | 55.0% | |
| GCCGTACGCCTTGGAGATAT+TGG | + | chr8.3:14697140-14697159 | None:intergenic | 55.0% | |
| TCAGGTCCTGTCACTGGTGA+TGG | + | chr8.3:14696035-14696054 | None:intergenic | 55.0% | |
| ! | ACCGTCGTTTGGTTGGTGCT+AGG | + | chr8.3:14696888-14696907 | None:intergenic | 55.0% |
| TCAGACACTCTGACTCCGCG+AGG | + | chr8.3:14697167-14697186 | None:intergenic | 60.0% | |
| AGGCGTACGGCTTTGCCTCG+CGG | - | chr8.3:14697149-14697168 | MS.gene038798:CDS | 65.0% | |
| CGAGGCAAAGCCGTACGCCT+TGG | + | chr8.3:14697149-14697168 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 14695933 | 14697322 | 14695933 | ID=MS.gene038798 |
| chr8.3 | mRNA | 14695933 | 14697322 | 14695933 | ID=MS.gene038798.t1;Parent=MS.gene038798 |
| chr8.3 | exon | 14697081 | 14697322 | 14697081 | ID=MS.gene038798.t1.exon1;Parent=MS.gene038798.t1 |
| chr8.3 | CDS | 14697081 | 14697322 | 14697081 | ID=cds.MS.gene038798.t1;Parent=MS.gene038798.t1 |
| chr8.3 | exon | 14696530 | 14696802 | 14696530 | ID=MS.gene038798.t1.exon2;Parent=MS.gene038798.t1 |
| chr8.3 | CDS | 14696530 | 14696802 | 14696530 | ID=cds.MS.gene038798.t1;Parent=MS.gene038798.t1 |
| chr8.3 | exon | 14695933 | 14696428 | 14695933 | ID=MS.gene038798.t1.exon3;Parent=MS.gene038798.t1 |
| chr8.3 | CDS | 14695933 | 14696428 | 14695933 | ID=cds.MS.gene038798.t1;Parent=MS.gene038798.t1 |
| Gene Sequence |
| Protein sequence |
