AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044502

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044502.t1 MTR_4g112630 92.260 323 23 2 3 324 5 326 0.0 592
MS.gene044502.t1 MTR_4g112650 79.819 332 54 4 3 323 5 334 0.0 521
MS.gene044502.t1 MTR_4g112670 75.522 335 65 5 1 322 4 334 1.21e-178 497
MS.gene044502.t1 MTR_4g112620 77.370 327 36 3 1 323 8 300 7.12e-177 491
MS.gene044502.t1 MTR_2g058450 54.341 311 127 4 23 322 28 334 1.98e-107 317
MS.gene044502.t1 MTR_0003s0530 70.811 185 38 4 142 314 1 181 3.45e-82 248
MS.gene044502.t1 MTR_7g490330 43.448 290 151 6 35 323 47 324 4.15e-73 229
MS.gene044502.t1 MTR_2g058410 52.766 235 98 3 99 323 1 232 2.16e-70 219
MS.gene044502.t1 MTR_7g490350 37.771 323 158 7 35 322 53 367 3.26e-69 220
MS.gene044502.t1 MTR_5g091980 38.462 325 184 6 1 323 12 322 1.12e-67 215
MS.gene044502.t1 MTR_7g090320 38.596 342 162 8 25 322 48 385 1.47e-67 217
MS.gene044502.t1 MTR_7g090300 38.154 325 156 8 35 323 53 368 2.32e-65 210
MS.gene044502.t1 MTR_2g087780 36.550 342 168 8 22 322 60 393 5.42e-64 207
MS.gene044502.t1 MTR_7g090310 37.160 331 161 7 35 322 58 384 4.79e-62 202
MS.gene044502.t1 MTR_4g050190 35.103 339 170 8 25 322 60 389 5.38e-61 199
MS.gene044502.t1 MTR_2g099030 33.036 336 180 6 23 318 70 400 1.10e-54 184
MS.gene044502.t1 MTR_4g112840 67.327 101 30 1 169 269 56 153 2.54e-39 136
MS.gene044502.t1 MTR_5g077620 72.619 84 21 2 1 84 1 82 2.87e-34 122
MS.gene044502.t1 MTR_8g074210 39.181 171 98 4 96 266 118 282 4.12e-27 109
MS.gene044502.t1 MTR_8g074170 38.596 171 99 4 96 266 118 282 1.90e-25 105
MS.gene044502.t1 MTR_8g074270 38.012 171 100 4 96 266 118 282 3.53e-25 104
MS.gene044502.t1 MTR_2g042430 31.381 239 134 8 33 270 74 283 4.18e-24 101
MS.gene044502.t1 MTR_2g058430 50.485 103 42 1 72 174 43 136 2.25e-23 97.4
MS.gene044502.t1 MTR_2g042370 33.133 166 105 4 106 270 112 272 1.46e-20 91.3
MS.gene044502.t1 MTR_2g042420 28.033 239 142 8 33 270 55 264 7.22e-20 89.4
MS.gene044502.t1 MTR_8g074320 38.462 130 72 4 96 222 95 219 2.58e-18 82.8
MS.gene044502.t1 MTR_1g075865 40.541 111 62 2 146 255 4 111 3.49e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044502.t1 AT1G74020 43.974 307 156 8 24 322 27 325 1.27e-71 225
MS.gene044502.t1 AT3G57030 40.810 321 145 7 35 318 56 368 1.09e-70 224
MS.gene044502.t1 AT1G74010 43.421 304 155 9 24 319 26 320 4.35e-69 218
MS.gene044502.t1 AT1G74000 41.311 305 167 7 24 322 29 327 1.22e-66 212
MS.gene044502.t1 AT3G57010 38.376 271 151 4 4 267 16 277 2.46e-63 205
MS.gene044502.t1 AT5G22020 37.195 328 161 9 33 322 73 393 6.78e-63 204
MS.gene044502.t1 AT5G22020 37.195 328 161 9 33 322 73 393 6.78e-63 204
MS.gene044502.t1 AT5G22020 37.195 328 161 9 33 322 73 393 6.78e-63 204
MS.gene044502.t1 AT1G08470 36.391 338 166 9 25 322 59 387 1.74e-62 203
MS.gene044502.t1 AT3G57020 40.000 240 135 2 29 268 47 277 1.14e-59 196
MS.gene044502.t1 AT2G41290 36.446 332 159 11 35 322 51 374 8.67e-59 193
MS.gene044502.t1 AT3G57020 37.917 240 126 2 29 268 47 263 7.61e-54 180
MS.gene044502.t1 AT2G41300 39.301 229 130 3 40 268 83 302 9.15e-54 181
MS.gene044502.t1 AT3G59530 36.090 266 161 3 26 286 75 336 5.15e-53 179
MS.gene044502.t1 AT3G59530 36.090 266 161 3 26 286 75 336 5.15e-53 179
MS.gene044502.t1 AT3G59530 36.090 266 161 3 26 286 75 336 5.15e-53 179
MS.gene044502.t1 AT3G51440 27.586 290 177 8 13 294 40 304 7.89e-23 97.8
MS.gene044502.t1 AT3G51430 35.028 177 106 5 96 271 113 281 2.08e-21 94.0
MS.gene044502.t1 AT3G51430 35.057 174 104 5 96 268 113 278 8.78e-21 92.0
MS.gene044502.t1 AT3G51450 30.732 205 125 6 96 295 113 305 6.21e-20 89.7
MS.gene044502.t1 AT3G51420 29.353 201 133 5 96 295 113 305 1.01e-19 89.0

Find 86 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTCAAGAGGCCAATTT+TGG 0.175988 8.1:-15504266 MS.gene044502:CDS
TATGCAGCTGATGCTTATTA+TGG 0.243078 8.1:-15505094 MS.gene044502:CDS
GAATTCCTCTTTATGTTATC+TGG 0.262678 8.1:+15504282 None:intergenic
CTTGTGCAGGTCCAACTAAT+TGG 0.268148 8.1:+15505035 None:intergenic
TATTAACTGCAATCCAAAAT+TGG 0.282710 8.1:+15504253 None:intergenic
AAATCTGAGGAATTTGCTTT+TGG 0.297207 8.1:+15504327 None:intergenic
TTGGGTTGCTTTCCCTCCAT+TGG 0.315305 8.1:+15505054 None:intergenic
AAATAAACGATTCCAGTGTT+TGG 0.321439 8.1:+15504974 None:intergenic
TGGGTTGCTTTCCCTCCATT+GGG 0.331282 8.1:+15505055 None:intergenic
CTGAAGCTTGTTCAGTAATA+TGG 0.333503 8.1:+15505499 None:intergenic
AGAAATCTTAAATTTGCATC+TGG 0.338821 8.1:-15504432 MS.gene044502:CDS
TAATAGTCTTACTTTGTCTT+CGG 0.340893 8.1:-15504235 MS.gene044502:CDS
GTCTCTCTTGTTGAAGAGTA+TGG 0.345465 8.1:-15504174 MS.gene044502:CDS
CTGTCAAATGCAAGAGAATC+AGG 0.348024 8.1:+15505455 None:intergenic
AATAGTCTTACTTTGTCTTC+GGG 0.365443 8.1:-15504234 MS.gene044502:CDS
GATTTATTCATGCTACTTGC+TGG 0.370329 8.1:-15504309 MS.gene044502:CDS
CTGTAAAACTATACCATTCT+CGG 0.373836 8.1:+15504200 None:intergenic
ATGCAGCTGATGCTTATTAT+GGG 0.375296 8.1:-15505093 MS.gene044502:CDS
ATCAGCAAACACGGTAGAAT+TGG 0.379198 8.1:+15505012 None:intergenic
AATAAACGATTCCAGTGTTT+GGG 0.380124 8.1:+15504975 None:intergenic
GCAATATGTGGAAGGCCATT+AGG 0.400762 8.1:-15505148 MS.gene044502:CDS
CACTGGTTAGCAGCGCTGTC+TGG 0.406496 8.1:+15504523 None:intergenic
TGCTTGGATCATAACTCAAT+AGG 0.410469 8.1:+15504478 None:intergenic
ACTGTTGTCTGGTTGTTGCT+TGG 0.420207 8.1:+15504462 None:intergenic
GATTTATATATTTACCTCTT+GGG 0.420261 8.1:+15505338 None:intergenic
TTGTGCAGGTCCAACTAATT+GGG 0.425364 8.1:+15505036 None:intergenic
TTCTCAGTAACACTGTTGTC+TGG 0.431970 8.1:+15504451 None:intergenic
GAGTACAATGGAACACTCTA+TGG 0.432828 8.1:-15504123 MS.gene044502:CDS
TGTGGAAGGCCATTAGGATT+GGG 0.435505 8.1:-15505142 MS.gene044502:CDS
TTGGGTTTCAATCATCAAAC+AGG 0.444949 8.1:-15505124 MS.gene044502:CDS
AGAGTATGGTCTTCTTGAAC+CGG 0.453051 8.1:-15504160 MS.gene044502:CDS
ATGGCCTTCCACATATTGCT+TGG 0.453479 8.1:+15505152 None:intergenic
CTTGTAAAGGTTGGCCCCAA+TGG 0.461054 8.1:-15505070 MS.gene044502:CDS
ATGTGGAAGGCCATTAGGAT+TGG 0.461713 8.1:-15505143 MS.gene044502:CDS
AAAACTATGCTTACTTGAGC+TGG 0.464925 8.1:+15504930 None:intergenic
GAAATCTTAAATTTGCATCT+GGG 0.465666 8.1:-15504431 MS.gene044502:CDS
TGGTCCAAGTGAAGGTTTCA+AGG 0.466762 8.1:-15505378 MS.gene044502:CDS
TATTATGGGCTTGTAAAGGT+TGG 0.470412 8.1:-15505079 MS.gene044502:CDS
CAGTAGAAAGATAGCAAGAA+TGG 0.470940 8.1:+15505541 None:intergenic
AGTGGCATTGGAGATAATTC+AGG 0.481306 8.1:-15504504 MS.gene044502:CDS
TACTCTTGAACCTCACTAGC+CGG 0.499543 8.1:+15504141 None:intergenic
GGGAAAGCAACCCAATTAGT+TGG 0.500291 8.1:-15505046 MS.gene044502:CDS
GCGCTGCTAACCAGTGGCAT+TGG 0.502363 8.1:-15504516 MS.gene044502:CDS
TGATTGAAACCCAATCCTAA+TGG 0.505270 8.1:+15505133 None:intergenic
TCTCTTGCATTTGACAGAAA+CGG 0.511849 8.1:-15505449 MS.gene044502:CDS
AATTCTACCGTGTTTGCTGA+TGG 0.517101 8.1:-15505010 MS.gene044502:CDS
TGAATTATCTCCAATGCCAC+TGG 0.518510 8.1:+15504506 None:intergenic
CTTGTTCAGTAATATGGCTA+TGG 0.523436 8.1:+15505505 None:intergenic
CCATCAGAAGAAGTAACATA+AGG 0.525792 8.1:+15505419 None:intergenic
CCTTATGTTACTTCTTCTGA+TGG 0.527626 8.1:-15505419 MS.gene044502:CDS
AAATATGTTGGTCCAAGTGA+AGG 0.529246 8.1:-15505386 MS.gene044502:CDS
GGTGTTAGAGTGACCGAGAA+TGG 0.530351 8.1:-15504213 MS.gene044502:CDS
TCAGAAATCCAAGCAATATG+TGG 0.532707 8.1:-15505160 MS.gene044502:CDS
TGCTTATTATGGGCTTGTAA+AGG 0.537666 8.1:-15505083 MS.gene044502:CDS
GGGGTGGCAGTAAGCGGAGA+TGG 0.543707 8.1:-15504411 MS.gene044502:CDS
ACGGTAGAATTGGCTTGTGC+AGG 0.544655 8.1:+15505022 None:intergenic
ATTCGGAGAGTGTGGTTGAA+AGG 0.547509 8.1:-15504351 MS.gene044502:CDS
TGATTGCATAAGAAGCAAGC+AGG 0.550700 8.1:+15504094 None:intergenic
GAAGACCAGATAACATAAAG+AGG 0.552163 8.1:-15504287 MS.gene044502:CDS
AGAGAATCAGGTCCTTTCAC+TGG 0.553043 8.1:+15505467 None:intergenic
TTAGATGTGGACCCAAACAC+TGG 0.559091 8.1:-15504986 MS.gene044502:CDS
AAATCTTAAATTTGCATCTG+GGG 0.560132 8.1:-15504430 MS.gene044502:CDS
TCAGGTCCTTTCACTGGTGA+TGG 0.564770 8.1:+15505473 None:intergenic
GTAAAGGTTGGCCCCAATGG+AGG 0.566207 8.1:-15505067 MS.gene044502:CDS
TAAAGGTTGGCCCCAATGGA+GGG 0.566544 8.1:-15505066 MS.gene044502:CDS
TATTCCTTGAAACCTTCACT+TGG 0.569604 8.1:+15505374 None:intergenic
CATTAATAATTCTATGGTGA+TGG 0.573040 8.1:-15505573 None:intergenic
TCTTCTTGAACCGGCTAGTG+AGG 0.578667 8.1:-15504151 MS.gene044502:CDS
CTAACACAATTCGGAGAGTG+TGG 0.584118 8.1:-15504359 MS.gene044502:CDS
GTTTGCTGATGGTTTAGATG+TGG 0.585669 8.1:-15504999 MS.gene044502:CDS
GGGTTGCTTTCCCTCCATTG+GGG 0.591391 8.1:+15505056 None:intergenic
CTGGAATTTAGTGCTAGCTA+TGG 0.599531 8.1:+15504949 None:intergenic
AGGAACAGGACAATCTGTGA+TGG 0.601201 8.1:-15505196 MS.gene044502:CDS
ATCTAAACCATCAGCAAACA+CGG 0.601997 8.1:+15505003 None:intergenic
GCATCTGGGGTGGCAGTAAG+CGG 0.604290 8.1:-15504417 MS.gene044502:CDS
TCTTAAATTTGCATCTGGGG+TGG 0.610328 8.1:-15504427 MS.gene044502:CDS
AAATCCAAGCAATATGTGGA+AGG 0.615490 8.1:-15505156 MS.gene044502:CDS
GCATTTGACAGAAACGGTGA+AGG 0.616080 8.1:-15505443 MS.gene044502:CDS
CAGCTACCATCACCAGTGAA+AGG 0.618564 8.1:-15505479 MS.gene044502:CDS
AACATAAAGAGGAATTCAAG+AGG 0.628213 8.1:-15504276 MS.gene044502:CDS
GATTGCATAAGAAGCAAGCA+GGG 0.638280 8.1:+15504095 None:intergenic
TACAATGGAACACTCTATGG+TGG 0.656288 8.1:-15504120 MS.gene044502:CDS
AAGTAGCATGAATAAATCTG+AGG 0.664600 8.1:+15504314 None:intergenic
CAGACAGCGCTGCTAACCAG+TGG 0.665038 8.1:-15504522 MS.gene044502:CDS
ATGCTTACACTTCTCCCAAG+AGG 0.667804 8.1:-15505352 MS.gene044502:intron
AGTGAGGTTCAAGAGTACAA+TGG 0.673039 8.1:-15504135 MS.gene044502:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATTACTATGTAAA+TGG + chr8.1:15504363-15504382 None:intergenic 10.0%
!!! AATGATTGTTTTTTATTTTT+TGG - chr8.1:15504418-15504437 MS.gene044502:CDS 10.0%
!! TGATAATTTATGAGAAAAAT+TGG + chr8.1:15504769-15504788 None:intergenic 15.0%
!! TTCAATTATGTTATTGTTTA+TGG - chr8.1:15504987-15505006 MS.gene044502:CDS 15.0%
!! GATTTATATATTTACCTCTT+GGG + chr8.1:15504305-15504324 None:intergenic 20.0%
!! TGATTTATATATTTACCTCT+TGG + chr8.1:15504306-15504325 None:intergenic 20.0%
!!! AATATTTTGCTAACACAATT+CGG - chr8.1:15505272-15505291 MS.gene044502:intron 20.0%
!!! TGTTTTTTATTTTTTGGTTC+AGG - chr8.1:15504424-15504443 MS.gene044502:CDS 20.0%
! AAATCTTAAATTTGCATCTG+GGG - chr8.1:15505210-15505229 MS.gene044502:intron 25.0%
! AGAAATCTTAAATTTGCATC+TGG - chr8.1:15505208-15505227 MS.gene044502:intron 25.0%
! CTTTCTTTCCTCAAATAATT+TGG - chr8.1:15504960-15504979 MS.gene044502:CDS 25.0%
! GAAATCTTAAATTTGCATCT+GGG - chr8.1:15505209-15505228 MS.gene044502:intron 25.0%
! TATTAACTGCAATCCAAAAT+TGG + chr8.1:15505390-15505409 None:intergenic 25.0%
!! GGAAGAATTTTCAAATATGT+TGG - chr8.1:15504242-15504261 MS.gene044502:CDS 25.0%
!! GTTTAGTTTCAAAATCATAG+AGG - chr8.1:15505024-15505043 MS.gene044502:CDS 25.0%
!! TAATAGTCTTACTTTGTCTT+CGG - chr8.1:15505405-15505424 MS.gene044502:CDS 25.0%
AAATAAACGATTCCAGTGTT+TGG + chr8.1:15504669-15504688 None:intergenic 30.0%
AACATAAAGAGGAATTCAAG+AGG - chr8.1:15505364-15505383 MS.gene044502:CDS 30.0%
AAGTAGCATGAATAAATCTG+AGG + chr8.1:15505329-15505348 None:intergenic 30.0%
AATAAACGATTCCAGTGTTT+GGG + chr8.1:15504668-15504687 None:intergenic 30.0%
CTGTAAAACTATACCATTCT+CGG + chr8.1:15505443-15505462 None:intergenic 30.0%
CTTTCCTCAAATAATTTGGA+GGG - chr8.1:15504964-15504983 MS.gene044502:CDS 30.0%
GAATTCCTCTTTATGTTATC+TGG + chr8.1:15505361-15505380 None:intergenic 30.0%
TCTTTCCTCAAATAATTTGG+AGG - chr8.1:15504963-15504982 MS.gene044502:CDS 30.0%
! AATAGTCTTACTTTGTCTTC+GGG - chr8.1:15505406-15505425 MS.gene044502:CDS 30.0%
!! AAATCTGAGGAATTTGCTTT+TGG + chr8.1:15505316-15505335 None:intergenic 30.0%
!!! TTATTTTTTGGTTCAGGAAC+AGG - chr8.1:15504430-15504449 MS.gene044502:CDS 30.0%
AAAACTATGCTTACTTGAGC+TGG + chr8.1:15504713-15504732 None:intergenic 35.0%
AAATATGTTGGTCCAAGTGA+AGG - chr8.1:15504254-15504273 MS.gene044502:CDS 35.0%
AAATCCAAGCAATATGTGGA+AGG - chr8.1:15504484-15504503 MS.gene044502:CDS 35.0%
ATCTAAACCATCAGCAAACA+CGG + chr8.1:15504640-15504659 None:intergenic 35.0%
ATGCAGCTGATGCTTATTAT+GGG - chr8.1:15504547-15504566 MS.gene044502:intron 35.0%
ATGGTCACTTGATTCATGTT+AGG + chr8.1:15504344-15504363 None:intergenic 35.0%
CAGTAGAAAGATAGCAAGAA+TGG + chr8.1:15504102-15504121 None:intergenic 35.0%
CCATCAGAAGAAGTAACATA+AGG + chr8.1:15504224-15504243 None:intergenic 35.0%
CTTGTTCAGTAATATGGCTA+TGG + chr8.1:15504138-15504157 None:intergenic 35.0%
GAAGACCAGATAACATAAAG+AGG - chr8.1:15505353-15505372 MS.gene044502:CDS 35.0%
TATGCAGCTGATGCTTATTA+TGG - chr8.1:15504546-15504565 MS.gene044502:intron 35.0%
TATTATGGGCTTGTAAAGGT+TGG - chr8.1:15504561-15504580 MS.gene044502:intron 35.0%
TATTCCTTGAAACCTTCACT+TGG + chr8.1:15504269-15504288 None:intergenic 35.0%
TCAGAAATCCAAGCAATATG+TGG - chr8.1:15504480-15504499 MS.gene044502:CDS 35.0%
TCTCTTGCATTTGACAGAAA+CGG - chr8.1:15504191-15504210 MS.gene044502:CDS 35.0%
TGAACCCTCCAAATTATTTG+AGG + chr8.1:15504971-15504990 None:intergenic 35.0%
TGATTGAAACCCAATCCTAA+TGG + chr8.1:15504510-15504529 None:intergenic 35.0%
TGCTTATTATGGGCTTGTAA+AGG - chr8.1:15504557-15504576 MS.gene044502:intron 35.0%
TGCTTGGATCATAACTCAAT+AGG + chr8.1:15505165-15505184 None:intergenic 35.0%
TGGTCACTTGATTCATGTTA+GGG + chr8.1:15504343-15504362 None:intergenic 35.0%
TTGGGTTTCAATCATCAAAC+AGG - chr8.1:15504516-15504535 MS.gene044502:CDS 35.0%
! CCTTATGTTACTTCTTCTGA+TGG - chr8.1:15504221-15504240 MS.gene044502:CDS 35.0%
! CTGAAGCTTGTTCAGTAATA+TGG + chr8.1:15504144-15504163 None:intergenic 35.0%
! GATTTATTCATGCTACTTGC+TGG - chr8.1:15505331-15505350 MS.gene044502:intron 35.0%
AGAGTATGGTCTTCTTGAAC+CGG - chr8.1:15505480-15505499 MS.gene044502:CDS 40.0%
ATCAGCAAACACGGTAGAAT+TGG + chr8.1:15504631-15504650 None:intergenic 40.0%
CTGGAATTTAGTGCTAGCTA+TGG + chr8.1:15504694-15504713 None:intergenic 40.0%
CTGTCAAATGCAAGAGAATC+AGG + chr8.1:15504188-15504207 None:intergenic 40.0%
GAGTACAATGGAACACTCTA+TGG - chr8.1:15505517-15505536 MS.gene044502:CDS 40.0%
GATTGCATAAGAAGCAAGCA+GGG + chr8.1:15505548-15505567 None:intergenic 40.0%
GTCTCTCTTGTTGAAGAGTA+TGG - chr8.1:15505466-15505485 MS.gene044502:CDS 40.0%
TACAATGGAACACTCTATGG+TGG - chr8.1:15505520-15505539 MS.gene044502:CDS 40.0%
TCTTAAATTTGCATCTGGGG+TGG - chr8.1:15505213-15505232 MS.gene044502:intron 40.0%
TGAATTATCTCCAATGCCAC+TGG + chr8.1:15505137-15505156 None:intergenic 40.0%
TGATTGCATAAGAAGCAAGC+AGG + chr8.1:15505549-15505568 None:intergenic 40.0%
TTCTCAGTAACACTGTTGTC+TGG + chr8.1:15505192-15505211 None:intergenic 40.0%
TTGTGCAGGTCCAACTAATT+GGG + chr8.1:15504607-15504626 None:intergenic 40.0%
! AATTCTACCGTGTTTGCTGA+TGG - chr8.1:15504630-15504649 MS.gene044502:intron 40.0%
! AGTGAGGTTCAAGAGTACAA+TGG - chr8.1:15505505-15505524 MS.gene044502:CDS 40.0%
! AGTGGCATTGGAGATAATTC+AGG - chr8.1:15505136-15505155 MS.gene044502:CDS 40.0%
! GGAATTCAAGAGGCCAATTT+TGG - chr8.1:15505374-15505393 MS.gene044502:CDS 40.0%
! GTTTGCTGATGGTTTAGATG+TGG - chr8.1:15504641-15504660 MS.gene044502:intron 40.0%
ACTGTTGTCTGGTTGTTGCT+TGG + chr8.1:15505181-15505200 None:intergenic 45.0%
AGAGAATCAGGTCCTTTCAC+TGG + chr8.1:15504176-15504195 None:intergenic 45.0%
AGCATGCGTCACAGATGTTA+GGG + chr8.1:15504926-15504945 None:intergenic 45.0%
AGGAACAGGACAATCTGTGA+TGG - chr8.1:15504444-15504463 MS.gene044502:CDS 45.0%
ATGCTTACACTTCTCCCAAG+AGG - chr8.1:15504288-15504307 MS.gene044502:CDS 45.0%
ATGGCCTTCCACATATTGCT+TGG + chr8.1:15504491-15504510 None:intergenic 45.0%
ATGTGGAAGGCCATTAGGAT+TGG - chr8.1:15504497-15504516 MS.gene044502:CDS 45.0%
CTAACACAATTCGGAGAGTG+TGG - chr8.1:15505281-15505300 MS.gene044502:intron 45.0%
CTTGTGCAGGTCCAACTAAT+TGG + chr8.1:15504608-15504627 None:intergenic 45.0%
GCAATATGTGGAAGGCCATT+AGG - chr8.1:15504492-15504511 MS.gene044502:CDS 45.0%
GCATTTGACAGAAACGGTGA+AGG - chr8.1:15504197-15504216 MS.gene044502:CDS 45.0%
GGGAAAGCAACCCAATTAGT+TGG - chr8.1:15504594-15504613 MS.gene044502:intron 45.0%
TACTCTTGAACCTCACTAGC+CGG + chr8.1:15505502-15505521 None:intergenic 45.0%
TGGTCCAAGTGAAGGTTTCA+AGG - chr8.1:15504262-15504281 MS.gene044502:CDS 45.0%
TGTGGAAGGCCATTAGGATT+GGG - chr8.1:15504498-15504517 MS.gene044502:CDS 45.0%
TTAGATGTGGACCCAAACAC+TGG - chr8.1:15504654-15504673 MS.gene044502:intron 45.0%
! ATTCGGAGAGTGTGGTTGAA+AGG - chr8.1:15505289-15505308 MS.gene044502:intron 45.0%
CAGCTACCATCACCAGTGAA+AGG - chr8.1:15504161-15504180 MS.gene044502:CDS 50.0%
GAGCATGCGTCACAGATGTT+AGG + chr8.1:15504927-15504946 None:intergenic 50.0%
GCATGCGTCACAGATGTTAG+GGG + chr8.1:15504925-15504944 None:intergenic 50.0%
GGTGTTAGAGTGACCGAGAA+TGG - chr8.1:15505427-15505446 MS.gene044502:CDS 50.0%
TCAGGTCCTTTCACTGGTGA+TGG + chr8.1:15504170-15504189 None:intergenic 50.0%
TCTTCTTGAACCGGCTAGTG+AGG - chr8.1:15505489-15505508 MS.gene044502:CDS 50.0%
! CTTGTAAAGGTTGGCCCCAA+TGG - chr8.1:15504570-15504589 MS.gene044502:intron 50.0%
! TAAAGGTTGGCCCCAATGGA+GGG - chr8.1:15504574-15504593 MS.gene044502:intron 50.0%
! TGGGTTGCTTTCCCTCCATT+GGG + chr8.1:15504588-15504607 None:intergenic 50.0%
! TTGGGTTGCTTTCCCTCCAT+TGG + chr8.1:15504589-15504608 None:intergenic 50.0%
!! ACGGTAGAATTGGCTTGTGC+AGG + chr8.1:15504621-15504640 None:intergenic 50.0%
! GGGTTGCTTTCCCTCCATTG+GGG + chr8.1:15504587-15504606 None:intergenic 55.0%
! GTAAAGGTTGGCCCCAATGG+AGG - chr8.1:15504573-15504592 MS.gene044502:intron 55.0%
CAGACAGCGCTGCTAACCAG+TGG - chr8.1:15505118-15505137 MS.gene044502:CDS 60.0%
GCGCTGCTAACCAGTGGCAT+TGG - chr8.1:15505124-15505143 MS.gene044502:CDS 60.0%
! CACTGGTTAGCAGCGCTGTC+TGG + chr8.1:15505120-15505139 None:intergenic 60.0%
! GCATCTGGGGTGGCAGTAAG+CGG - chr8.1:15505223-15505242 MS.gene044502:intron 60.0%
GGGGTGGCAGTAAGCGGAGA+TGG - chr8.1:15505229-15505248 MS.gene044502:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 15504080 15505582 15504080 ID=MS.gene044502
chr8.1 mRNA 15504080 15505582 15504080 ID=MS.gene044502.t1;Parent=MS.gene044502
chr8.1 exon 15505353 15505582 15505353 ID=MS.gene044502.t1.exon1;Parent=MS.gene044502.t1
chr8.1 CDS 15505353 15505582 15505353 ID=cds.MS.gene044502.t1;Parent=MS.gene044502.t1
chr8.1 exon 15504944 15505216 15504944 ID=MS.gene044502.t1.exon2;Parent=MS.gene044502.t1
chr8.1 CDS 15504944 15505216 15504944 ID=cds.MS.gene044502.t1;Parent=MS.gene044502.t1
chr8.1 exon 15504080 15504551 15504080 ID=MS.gene044502.t1.exon3;Parent=MS.gene044502.t1
chr8.1 CDS 15504080 15504551 15504080 ID=cds.MS.gene044502.t1;Parent=MS.gene044502.t1
Gene Sequence

>MS.gene044502

ATGGTGATGGTTGTCACTGCCATTCTTGCTATCTTTCTACTGTGTTCTACATCATCCATAGCCATATTACTGAACAAGCTTCAGCTACCATCACCAGTGAAAGGACCTGATTCTCTTGCATTTGACAGAAACGGTGAAGGACCTTATGTTACTTCTTCTGATGGAAGAATTTTCAAATATGTTGGTCCAAGTGAAGGTTTCAAGGAATATGCTTACACTTCTCCCAAGAGGTAAATATATAAATCATTCATCAGCTATTACCCTAACATGAATCAAGTGACCATTTACATAGTAATTTATTTTTATAAATAAAAGTAAAAACAGAAAAGAAAGTAAAAAATGATTGTTTTTTATTTTTTGGTTCAGGAACAGGACAATCTGTGATGGATTTTCTGACTTCTCAGAAATCCAAGCAATATGTGGAAGGCCATTAGGATTGGGTTTCAATCATCAAACAGGAGATTTGTATGCAGCTGATGCTTATTATGGGCTTGTAAAGGTTGGCCCCAATGGAGGGAAAGCAACCCAATTAGTTGGACCTGCACAAGCCAATTCTACCGTGTTTGCTGATGGTTTAGATGTGGACCCAAACACTGGAATCGTTTATTTTACCATAGCTAGCACTAAATTCCAGCTCAAGTAAGCATAGTTTTCTCTACTTACAATATTGTCTTTGCAGCTAAATACCAATTTTTCTCATAAATTATCAGCTTATAATATGTATTCAAAAAATAATATTGAATTAAACTGAAAAATAACTTATAAACACGTGACAAGATGTTTTCATATATTCTCTCAAGTGTTTATATCATAAAAATATGTTCAAATACGTTATGAATATACCCCTAACATCTGTGACGCATGCTCTTTTCTATTTCTGCTTTCTTTCCTCAAATAATTTGGAGGGTTCAATTATGTTATTGTTTATGGTTGATTAAACATTTGTTTAGTTTCAAAATCATAGAGGCAGTATCACATTTTATATTAGTGCATGCAAGTAACAAATGTGCACGTAACTTGATTTTTAATAGAGATTTCCAGACAGCGCTGCTAACCAGTGGCATTGGAGATAATTCAGGAAGCCTATTGAGTTATGATCCAAGCAACAACCAGACAACAGTGTTACTGAGAAATCTTAAATTTGCATCTGGGGTGGCAGTAAGCGGAGATGGCTCATTTGTACTTGTTAGTGAATATTTTGCTAACACAATTCGGAGAGTGTGGTTGAAAGGACCAAAAGCAAATTCCTCAGATTTATTCATGCTACTTGCTGGAAGACCAGATAACATAAAGAGGAATTCAAGAGGCCAATTTTGGATTGCAGTTAATAGTCTTACTTTGTCTTCGGGTGTTAGAGTGACCGAGAATGGTATAGTTTTACAGATTGTCTCTCTTGTTGAAGAGTATGGTCTTCTTGAACCGGCTAGTGAGGTTCAAGAGTACAATGGAACACTCTATGGTGGCTCCCTGCTTGCTTCTTATGCAATCATTTTTACTCCCTAG
Protein sequence

>MS.gene044502.t1

MVMVVTAILAIFLLCSTSSIAILLNKLQLPSPVKGPDSLAFDRNGEGPYVTSSDGRIFKYVGPSEGFKEYAYTSPKRNRTICDGFSDFSEIQAICGRPLGLGFNHQTGDLYAADAYYGLVKVGPNGGKATQLVGPAQANSTVFADGLDVDPNTGIVYFTIASTKFQLKDFQTALLTSGIGDNSGSLLSYDPSNNQTTVLLRNLKFASGVAVSGDGSFVLVSEYFANTIRRVWLKGPKANSSDLFMLLAGRPDNIKRNSRGQFWIAVNSLTLSSGVRVTENGIVLQIVSLVEEYGLLEPASEVQEYNGTLYGGSLLASYAIIFTP