AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78185

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78185.t1 MTR_2g058450 79.525 337 67 2 1 336 1 336 1.25e-175 490
MS.gene78185.t1 MTR_2g058410 95.690 232 10 0 104 335 1 232 3.59e-151 424
MS.gene78185.t1 MTR_4g112650 54.762 336 149 2 1 335 1 334 7.02e-121 351
MS.gene78185.t1 MTR_4g112670 53.916 332 148 3 5 334 6 334 5.86e-116 339
MS.gene78185.t1 MTR_4g112630 52.819 337 145 3 1 335 1 325 6.84e-111 326
MS.gene78185.t1 MTR_4g112620 48.503 334 133 3 2 335 6 300 2.49e-99 295
MS.gene78185.t1 MTR_7g490330 40.717 307 162 4 31 336 38 325 4.30e-70 221
MS.gene78185.t1 MTR_7g490350 37.500 320 168 5 40 333 53 366 8.34e-65 209
MS.gene78185.t1 MTR_5g091980 40.584 308 160 5 30 336 38 323 1.60e-63 204
MS.gene78185.t1 MTR_7g090320 37.725 334 157 7 40 331 58 382 3.73e-63 206
MS.gene78185.t1 MTR_7g090310 37.805 328 164 8 40 331 58 381 4.08e-62 203
MS.gene78185.t1 MTR_7g090300 37.888 322 170 6 40 336 53 369 1.97e-61 201
MS.gene78185.t1 MTR_4g050190 36.890 328 170 9 37 333 67 388 7.91e-60 197
MS.gene78185.t1 MTR_2g087780 36.795 337 177 8 28 333 61 392 1.12e-58 194
MS.gene78185.t1 MTR_0003s0530 55.249 181 78 2 148 326 2 181 1.31e-58 188
MS.gene78185.t1 MTR_2g099030 31.751 337 198 5 28 334 70 404 8.55e-51 174
MS.gene78185.t1 MTR_2g058430 88.095 84 10 0 93 176 50 133 1.34e-46 159
MS.gene78185.t1 MTR_8g074210 32.773 238 127 6 40 273 78 286 1.40e-30 119
MS.gene78185.t1 MTR_4g112840 52.475 101 47 1 174 274 56 155 7.26e-28 107
MS.gene78185.t1 MTR_8g074270 31.513 238 136 6 37 273 75 286 4.49e-27 110
MS.gene78185.t1 MTR_8g074170 31.950 241 131 7 37 273 75 286 2.36e-25 105
MS.gene78185.t1 MTR_2g042430 32.051 234 129 10 38 269 74 279 2.38e-19 88.2
MS.gene78185.t1 MTR_2g042370 34.395 157 97 5 115 269 116 268 7.57e-18 83.6
MS.gene78185.t1 MTR_2g042420 33.121 157 98 5 115 269 109 260 2.08e-16 79.3
MS.gene78185.t1 MTR_8g074320 35.811 148 79 6 85 225 81 219 5.06e-16 76.3
MS.gene78185.t1 MTR_5g077620 48.810 84 40 1 7 90 4 84 8.48e-16 73.9
MS.gene78185.t1 MTR_1g075865 38.318 107 62 3 152 257 7 110 4.97e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78185.t1 AT1G74020 43.087 311 160 8 29 334 27 325 4.85e-75 234
MS.gene78185.t1 AT1G74000 41.748 309 167 6 29 334 29 327 1.96e-74 233
MS.gene78185.t1 AT1G74010 42.444 311 165 7 29 336 26 325 1.47e-70 223
MS.gene78185.t1 AT3G57030 40.000 315 157 7 39 326 55 364 2.06e-63 206
MS.gene78185.t1 AT5G22020 37.117 326 171 9 37 333 72 392 3.85e-63 206
MS.gene78185.t1 AT5G22020 37.117 326 171 9 37 333 72 392 3.85e-63 206
MS.gene78185.t1 AT5G22020 37.117 326 171 9 37 333 72 392 3.85e-63 206
MS.gene78185.t1 AT1G08470 36.810 326 172 9 37 333 66 386 4.13e-58 192
MS.gene78185.t1 AT2G41290 36.283 339 179 8 31 336 42 376 6.39e-56 186
MS.gene78185.t1 AT3G57010 39.344 244 139 4 28 270 42 277 1.89e-53 180
MS.gene78185.t1 AT3G57020 37.553 237 141 2 34 270 47 276 5.38e-50 171
MS.gene78185.t1 AT3G59530 37.553 237 139 4 40 270 84 317 2.83e-47 164
MS.gene78185.t1 AT3G59530 37.553 237 139 4 40 270 84 317 2.83e-47 164
MS.gene78185.t1 AT3G59530 37.553 237 139 4 40 270 84 317 2.83e-47 164
MS.gene78185.t1 AT2G41300 37.288 236 141 2 35 270 73 301 2.85e-46 162
MS.gene78185.t1 AT3G57020 35.021 237 133 2 34 270 47 262 8.29e-44 154
MS.gene78185.t1 AT3G51440 29.536 237 135 8 38 269 67 276 4.90e-22 95.9
MS.gene78185.t1 AT3G51430 28.270 237 138 8 38 269 67 276 1.64e-20 91.7
MS.gene78185.t1 AT3G51430 28.270 237 138 8 38 269 67 276 1.71e-20 91.7
MS.gene78185.t1 AT3G51450 26.180 233 148 7 38 269 67 276 6.71e-19 87.0

Find 90 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGGCTATTAAGCAGTTTC+TGG 0.156926 2.3:-35971788 None:intergenic
ATGTACTAGGCAGCCCTTTC+GGG 0.172090 2.3:+35971229 MS.gene78185:CDS
TATATAGCTGATGCTTATTA+TGG 0.199171 2.3:+35971156 MS.gene78185:CDS
GGACCTCGAGGAACGAGTTT+TGG 0.237051 2.3:+35972039 MS.gene78185:CDS
AATGTGGTTTGTTTCGTTAT+TGG 0.242281 2.3:-35971843 None:intergenic
CGAATAGAATCCGGAGATTC+TGG 0.258519 2.3:+35971946 MS.gene78185:CDS
ATCCGGAGATTCTGGCTTAC+AGG 0.284143 2.3:+35971954 MS.gene78185:CDS
GTGCCTCTTGTTGAGGAGTT+TGG 0.291880 2.3:+35972161 MS.gene78185:CDS
TAGGCCTCCCACATGTTTCT+TGG 0.297657 2.3:-35971098 None:intergenic
GTGGCAGTGAATTATCCTTT+TGG 0.303939 2.3:+35972062 MS.gene78185:CDS
GATATATTCTTGTGGCTTCC+AGG 0.310786 2.3:+35971996 MS.gene78185:CDS
AGCCCTTTCGGGTTTCTTGC+TGG 0.336808 2.3:+35971240 MS.gene78185:CDS
AATGTACTAGGCAGCCCTTT+CGG 0.343008 2.3:+35971228 MS.gene78185:CDS
CTTGTTGAGGAGTTTGGCAC+TGG 0.354664 2.3:+35972167 MS.gene78185:CDS
CGTAATCTAGCTATGGCAAC+AGG 0.355591 2.3:+35971873 MS.gene78185:CDS
TTATTGGATTGTATCTGAAC+AGG 0.380994 2.3:-35971827 None:intergenic
AGCAACATGGCTGTTATCAC+TGG 0.386843 2.3:+35970578 MS.gene78185:CDS
TAGATGATGAATAGAGTATG+AGG 0.400964 2.3:-35970613 None:intergenic
CTTGTGAAGGTTTCTTATGA+TGG 0.407212 2.3:+35971180 MS.gene78185:CDS
CAACTTGTTTCTAATGTACT+AGG 0.408485 2.3:+35971216 MS.gene78185:CDS
TATCTTCCACCATCACTAAC+AGG 0.409455 2.3:+35970668 MS.gene78185:CDS
CTTAGTCCAAGAGGCAAAAC+AGG 0.412973 2.3:-35972107 None:intergenic
AAATAAACGATTCCAGTGTT+AGG 0.413431 2.3:-35971276 None:intergenic
TCCCTAGCATTTGATTCCAT+TGG 0.419739 2.3:+35970698 MS.gene78185:CDS
CACTGGAATCGTTTATTTCA+CGG 0.419917 2.3:+35971281 MS.gene78185:CDS
CTAGCATTTGATTCCATTGG+TGG 0.422268 2.3:+35970701 MS.gene78185:CDS
TCTGTCTAGTAATTTGCAAT+AGG 0.427239 2.3:-35970642 None:intergenic
ATATCTGAAGTATATGCATT+TGG 0.445300 2.3:-35971978 None:intergenic
CTAGCTATTATCACAAGATC+AGG 0.448677 2.3:+35971307 MS.gene78185:CDS
AGAAACATGTGGGAGGCCTA+TGG 0.451046 2.3:+35971101 MS.gene78185:CDS
GAATCAAATGCTAGGGACTC+AGG 0.459141 2.3:-35970692 None:intergenic
GCATTTGATTCCATTGGTGG+AGG 0.460168 2.3:+35970704 MS.gene78185:CDS
CTGTTGCCATAGCTAGATTA+CGG 0.466820 2.3:-35971872 None:intergenic
GTCCTGTAAGCCAGAATCTC+CGG 0.467572 2.3:-35971956 None:intergenic
GAAACATGTGGGAGGCCTAT+GGG 0.483364 2.3:+35971102 MS.gene78185:CDS
CCTTACACTGGTGTTTCTGA+TGG 0.486655 2.3:+35970728 MS.gene78185:CDS
AGATTAGACACGTACCGGTC+TGG 0.488853 2.3:-35970809 None:intergenic
AGAGGCAAAACAGGAGGTAC+TGG 0.493237 2.3:-35972098 None:intergenic
AGAGGCTGTGCCTCTTGTTG+AGG 0.494455 2.3:+35972154 MS.gene78185:CDS
TTGATGTTATCTGGTCTCCC+TGG 0.500478 2.3:-35972014 None:intergenic
TTTCGGGTTTCTTGCTGGCG+TGG 0.506089 2.3:+35971245 MS.gene78185:CDS
CCATCAGAAACACCAGTGTA+AGG 0.510401 2.3:-35970728 None:intergenic
GACTCAGGGCCTGTTAGTGA+TGG 0.512435 2.3:-35970677 None:intergenic
AGTACAAGGCGAATAGAATC+CGG 0.518601 2.3:+35971937 MS.gene78185:CDS
ATTGGTGGAGGGCCTTACAC+TGG 0.525491 2.3:+35970716 MS.gene78185:CDS
AAAACAGGAGGTACTGGTGG+TGG 0.526815 2.3:-35972092 None:intergenic
CATTTGATTCCATTGGTGGA+GGG 0.528926 2.3:+35970705 MS.gene78185:CDS
GGAGACCAGATAACATCAAA+AGG 0.530015 2.3:+35972018 MS.gene78185:CDS
ATATATTCTTGTGGCTTCCA+GGG 0.532891 2.3:+35971997 MS.gene78185:CDS
AGGAACAAAACAATTTGTGA+TGG 0.538253 2.3:+35971054 MS.gene78185:intron
AGTGTAAGGCCCTCCACCAA+TGG 0.538991 2.3:-35970714 None:intergenic
TCGCCTTGTACTCACTTACA+AGG 0.539423 2.3:-35971926 None:intergenic
TCAGGGCCTGTTAGTGATGG+TGG 0.541903 2.3:-35970674 None:intergenic
AGATGATGAATAGAGTATGA+GGG 0.545548 2.3:-35970612 None:intergenic
CGCCAGCAAGAAACCCGAAA+GGG 0.545590 2.3:-35971242 None:intergenic
TGTCCTTGTAAGTGAGTACA+AGG 0.546556 2.3:+35971923 MS.gene78185:CDS
TTGCTCACATTTCACCAGAC+CGG 0.560560 2.3:+35970795 MS.gene78185:CDS
TGCTTATTATGGACTTGTGA+AGG 0.563222 2.3:+35971167 MS.gene78185:CDS
ACCAATGGAATCAAATGCTA+GGG 0.565533 2.3:-35970699 None:intergenic
CACCAATGGAATCAAATGCT+AGG 0.576942 2.3:-35970700 None:intergenic
GTTGCTCCGTAATCTAGCTA+TGG 0.579397 2.3:+35971866 MS.gene78185:CDS
ATACTTCAGATATATTCTTG+TGG 0.582130 2.3:+35971988 MS.gene78185:CDS
TCAGAACTCCAAGAAACATG+TGG 0.584132 2.3:+35971090 MS.gene78185:CDS
ACAGGAGGTACTGGTGGTGG+TGG 0.586387 2.3:-35972089 None:intergenic
GGGGTAGCAGTAAGCAGCAA+TGG 0.587063 2.3:+35971894 MS.gene78185:CDS
GGACTAAGAATCAATGAGCA+AGG 0.590807 2.3:+35972122 MS.gene78185:CDS
CAGTGAAGTTCATGAAGCTG+AGG 0.595249 2.3:+35972196 MS.gene78185:CDS
GTAATCTAGCTATGGCAACA+GGG 0.595258 2.3:+35971874 MS.gene78185:CDS
AATCAAATGCTAGGGACTCA+GGG 0.595632 2.3:-35970691 None:intergenic
GTGCCAAACTCCTCAACAAG+AGG 0.597643 2.3:-35972164 None:intergenic
TAATTGTAACTCAACCCCAT+AGG 0.600699 2.3:-35971117 None:intergenic
AAACATGTGGGAGGCCTATG+GGG 0.604258 2.3:+35971103 MS.gene78185:CDS
TCATTGATTCTTAGTCCAAG+AGG 0.611298 2.3:-35972116 None:intergenic
GTGAAATGTGAGCAAACTCA+AGG 0.618650 2.3:-35970787 None:intergenic
GTGAAGGTTTCTTATGATGG+AGG 0.621834 2.3:+35971183 MS.gene78185:CDS
ATTAAACATGTCTAGCAACA+TGG 0.622340 2.3:+35970565 None:intergenic
GGTGGTGGTGGTGACCCAAA+AGG 0.627094 2.3:-35972077 None:intergenic
GCAACATGGCTGTTATCACT+GGG 0.627898 2.3:+35970579 MS.gene78185:CDS
ACGCCAGCAAGAAACCCGAA+AGG 0.628543 2.3:-35971243 None:intergenic
GAGTTACAATTACAAGACAA+AGG 0.636154 2.3:+35971128 MS.gene78185:CDS
GGCAAAACAGGAGGTACTGG+TGG 0.653676 2.3:-35972095 None:intergenic
CAGAACTCCAAGAAACATGT+GGG 0.662175 2.3:+35971091 MS.gene78185:CDS
CACCCAAAACTCGTTCCTCG+AGG 0.665102 2.3:-35972042 None:intergenic
GTGGATGTCGATCCTAACAC+TGG 0.666158 2.3:+35971264 MS.gene78185:CDS
AGTGAAGTTCATGAAGCTGA+GGG 0.672665 2.3:+35972197 MS.gene78185:CDS
AACTCCAAGAAACATGTGGG+AGG 0.685654 2.3:+35971094 MS.gene78185:CDS
TAGATTACGGAGCAACAATG+TGG 0.690114 2.3:-35971859 None:intergenic
TAATCTAGCTATGGCAACAG+GGG 0.694131 2.3:+35971875 MS.gene78185:CDS
AGTCCAAGAGGCAAAACAGG+AGG 0.699465 2.3:-35972104 None:intergenic
ATAACATCAAAAGGACCTCG+AGG 0.715796 2.3:+35972027 MS.gene78185:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAATTATAGTCATAGT+CGG + chr2.3:35971002-35971021 MS.gene78185:intron 20.0%
!!! ATTTAGGTCACAATTTTAAT+CGG - chr2.3:35971755-35971774 None:intergenic 20.0%
! AATCATGAGATAGAATAGAA+TGG - chr2.3:35971337-35971356 None:intergenic 25.0%
! ATACTTCAGATATATTCTTG+TGG + chr2.3:35971988-35972007 MS.gene78185:CDS 25.0%
! TATATAGCTGATGCTTATTA+TGG + chr2.3:35971156-35971175 MS.gene78185:CDS 25.0%
! TCTCAAAGCAAGTATATTAA+AGG + chr2.3:35971536-35971555 MS.gene78185:intron 25.0%
!! ATATCTGAAGTATATGCATT+TGG - chr2.3:35971981-35972000 None:intergenic 25.0%
!! CTTTGAGAAGAGAATATTAT+AGG - chr2.3:35971524-35971543 None:intergenic 25.0%
!! TACGTGTCTAATCTAAAATA+TGG + chr2.3:35970818-35970837 MS.gene78185:intron 25.0%
AAATAAACGATTCCAGTGTT+AGG - chr2.3:35971279-35971298 None:intergenic 30.0%
AATGTGAACATCTTTCTTGA+CGG - chr2.3:35970853-35970872 None:intergenic 30.0%
AGATGATGAATAGAGTATGA+GGG - chr2.3:35970615-35970634 None:intergenic 30.0%
AGGAACAAAACAATTTGTGA+TGG + chr2.3:35971054-35971073 MS.gene78185:intron 30.0%
ATTATAGTCATAGTCGGTTA+AGG + chr2.3:35971008-35971027 MS.gene78185:intron 30.0%
GAGTTACAATTACAAGACAA+AGG + chr2.3:35971128-35971147 MS.gene78185:CDS 30.0%
GTTGCGTTTATAAAGTGTAT+AGG - chr2.3:35971609-35971628 None:intergenic 30.0%
TAGAGCAGATTAAACCTATA+TGG - chr2.3:35970891-35970910 None:intergenic 30.0%
TAGATGATGAATAGAGTATG+AGG - chr2.3:35970616-35970635 None:intergenic 30.0%
TTATTGGATTGTATCTGAAC+AGG - chr2.3:35971830-35971849 None:intergenic 30.0%
! AATTGTGACCTAAATTTTGC+AGG + chr2.3:35971760-35971779 MS.gene78185:intron 30.0%
! AGTATTGAACTTGACCATAT+AGG + chr2.3:35970874-35970893 MS.gene78185:intron 30.0%
! ATTGTGACCTAAATTTTGCA+GGG + chr2.3:35971761-35971780 MS.gene78185:intron 30.0%
! ATTTTAGATTAGACACGTAC+CGG - chr2.3:35970817-35970836 None:intergenic 30.0%
! TCTGTCTAGTAATTTGCAAT+AGG - chr2.3:35970645-35970664 None:intergenic 30.0%
!! AATGTGGTTTGTTTCGTTAT+TGG - chr2.3:35971846-35971865 None:intergenic 30.0%
!! CAACTTGTTTCTAATGTACT+AGG + chr2.3:35971216-35971235 MS.gene78185:CDS 30.0%
!! TGAGCAAGGTTTAATTTTAG+AGG + chr2.3:35972136-35972155 MS.gene78185:CDS 30.0%
!!! AATAGCCGAGATATTTTTTC+TGG + chr2.3:35971801-35971820 MS.gene78185:CDS 30.0%
ACCAATGGAATCAAATGCTA+GGG - chr2.3:35970702-35970721 None:intergenic 35.0%
ATATATTCTTGTGGCTTCCA+GGG + chr2.3:35971997-35972016 MS.gene78185:CDS 35.0%
CACTGGAATCGTTTATTTCA+CGG + chr2.3:35971281-35971300 MS.gene78185:CDS 35.0%
CATAGCAATGCGAAAAAACA+TGG - chr2.3:35971363-35971382 None:intergenic 35.0%
CTAGCTATTATCACAAGATC+AGG + chr2.3:35971307-35971326 MS.gene78185:CDS 35.0%
CTTGTGAAGGTTTCTTATGA+TGG + chr2.3:35971180-35971199 MS.gene78185:CDS 35.0%
GCAAATATTCTCTCTAGTCT+TGG + chr2.3:35971729-35971748 MS.gene78185:intron 35.0%
GGCTTCCAGAAAAAATATCT+CGG - chr2.3:35971809-35971828 None:intergenic 35.0%
TAATTGTAACTCAACCCCAT+AGG - chr2.3:35971120-35971139 None:intergenic 35.0%
TGCTTATTATGGACTTGTGA+AGG + chr2.3:35971167-35971186 MS.gene78185:CDS 35.0%
TTCCTGTAACAACAATGACA+TGG - chr2.3:35971039-35971058 None:intergenic 35.0%
! AACCATGTCATTGTTGTTAC+AGG + chr2.3:35971034-35971053 MS.gene78185:intron 35.0%
! TCATGATGACTTGATGATTC+AGG - chr2.3:35971470-35971489 None:intergenic 35.0%
! TGGCAGTGAATTATCCTTTT+GGG + chr2.3:35972063-35972082 MS.gene78185:CDS 35.0%
!! TCATTGATTCTTAGTCCAAG+AGG - chr2.3:35972119-35972138 None:intergenic 35.0%
AATCAAATGCTAGGGACTCA+GGG - chr2.3:35970694-35970713 None:intergenic 40.0%
AGTACAAGGCGAATAGAATC+CGG + chr2.3:35971937-35971956 MS.gene78185:CDS 40.0%
AGTGAAGTTCATGAAGCTGA+GGG + chr2.3:35972197-35972216 MS.gene78185:CDS 40.0%
ATAACATCAAAAGGACCTCG+AGG + chr2.3:35972027-35972046 MS.gene78185:CDS 40.0%
CACCAATGGAATCAAATGCT+AGG - chr2.3:35970703-35970722 None:intergenic 40.0%
CAGAACTCCAAGAAACATGT+GGG + chr2.3:35971091-35971110 MS.gene78185:CDS 40.0%
CATTTGATTCCATTGGTGGA+GGG + chr2.3:35970705-35970724 MS.gene78185:CDS 40.0%
CTAGCATTTGATTCCATTGG+TGG + chr2.3:35970701-35970720 MS.gene78185:CDS 40.0%
CTGTTGCCATAGCTAGATTA+CGG - chr2.3:35971875-35971894 None:intergenic 40.0%
GATATATTCTTGTGGCTTCC+AGG + chr2.3:35971996-35972015 MS.gene78185:CDS 40.0%
GGACTAAGAATCAATGAGCA+AGG + chr2.3:35972122-35972141 MS.gene78185:CDS 40.0%
GGAGACCAGATAACATCAAA+AGG + chr2.3:35972018-35972037 MS.gene78185:CDS 40.0%
GTAATCTAGCTATGGCAACA+GGG + chr2.3:35971874-35971893 MS.gene78185:CDS 40.0%
GTGAAATGTGAGCAAACTCA+AGG - chr2.3:35970790-35970809 None:intergenic 40.0%
GTGAAGGTTTCTTATGATGG+AGG + chr2.3:35971183-35971202 MS.gene78185:CDS 40.0%
TAATCTAGCTATGGCAACAG+GGG + chr2.3:35971875-35971894 MS.gene78185:CDS 40.0%
TAGATTACGGAGCAACAATG+TGG - chr2.3:35971862-35971881 None:intergenic 40.0%
TATCTTCCACCATCACTAAC+AGG + chr2.3:35970668-35970687 MS.gene78185:CDS 40.0%
TCAGAACTCCAAGAAACATG+TGG + chr2.3:35971090-35971109 MS.gene78185:CDS 40.0%
TCCCTAGCATTTGATTCCAT+TGG + chr2.3:35970698-35970717 MS.gene78185:CDS 40.0%
TGATAGTAGTGAGTTCACAC+AGG + chr2.3:35971692-35971711 MS.gene78185:intron 40.0%
TGGAGATCCCTGCAAAATTT+AGG - chr2.3:35971771-35971790 None:intergenic 40.0%
TGTCCTTGTAAGTGAGTACA+AGG + chr2.3:35971923-35971942 MS.gene78185:CDS 40.0%
! ATGACTTGATGATTCAGGCA+TGG - chr2.3:35971465-35971484 None:intergenic 40.0%
! GAGGTCCTTTTGATGTTATC+TGG - chr2.3:35972026-35972045 None:intergenic 40.0%
! GTGGCAGTGAATTATCCTTT+TGG + chr2.3:35972062-35972081 MS.gene78185:CDS 40.0%
AACTCCAAGAAACATGTGGG+AGG + chr2.3:35971094-35971113 MS.gene78185:CDS 45.0%
AATGTACTAGGCAGCCCTTT+CGG + chr2.3:35971228-35971247 MS.gene78185:CDS 45.0%
AGCAACATGGCTGTTATCAC+TGG + chr2.3:35970578-35970597 MS.gene78185:CDS 45.0%
CAGTGAAGTTCATGAAGCTG+AGG + chr2.3:35972196-35972215 MS.gene78185:CDS 45.0%
CCATCAGAAACACCAGTGTA+AGG - chr2.3:35970731-35970750 None:intergenic 45.0%
CGAATAGAATCCGGAGATTC+TGG + chr2.3:35971946-35971965 MS.gene78185:CDS 45.0%
CGTAATCTAGCTATGGCAAC+AGG + chr2.3:35971873-35971892 MS.gene78185:CDS 45.0%
CTCGGCTATTAAGCAGTTTC+TGG - chr2.3:35971791-35971810 None:intergenic 45.0%
CTTAGTCCAAGAGGCAAAAC+AGG - chr2.3:35972110-35972129 None:intergenic 45.0%
GAATCAAATGCTAGGGACTC+AGG - chr2.3:35970695-35970714 None:intergenic 45.0%
GCAACATGGCTGTTATCACT+GGG + chr2.3:35970579-35970598 MS.gene78185:CDS 45.0%
GCATTTGATTCCATTGGTGG+AGG + chr2.3:35970704-35970723 MS.gene78185:CDS 45.0%
GTTGCTCCGTAATCTAGCTA+TGG + chr2.3:35971866-35971885 MS.gene78185:CDS 45.0%
TCGCCTTGTACTCACTTACA+AGG - chr2.3:35971929-35971948 None:intergenic 45.0%
TTGATGTTATCTGGTCTCCC+TGG - chr2.3:35972017-35972036 None:intergenic 45.0%
TTGCTCACATTTCACCAGAC+CGG + chr2.3:35970795-35970814 MS.gene78185:CDS 45.0%
! CCTTACACTGGTGTTTCTGA+TGG + chr2.3:35970728-35970747 MS.gene78185:CDS 45.0%
!! AGTGTCGACGTGCTTTCATA+GGG + chr2.3:35970944-35970963 MS.gene78185:intron 45.0%
!!! AATTATTATGTATTATATTT+TGG - chr2.3:35970977-35970996 None:intergenic 5.0%
AAACATGTGGGAGGCCTATG+GGG + chr2.3:35971103-35971122 MS.gene78185:CDS 50.0%
AGAAACATGTGGGAGGCCTA+TGG + chr2.3:35971101-35971120 MS.gene78185:CDS 50.0%
AGTCCAAGAGGCAAAACAGG+AGG - chr2.3:35972107-35972126 None:intergenic 50.0%
ATGTACTAGGCAGCCCTTTC+GGG + chr2.3:35971229-35971248 MS.gene78185:CDS 50.0%
CTTGTTGAGGAGTTTGGCAC+TGG + chr2.3:35972167-35972186 MS.gene78185:CDS 50.0%
GAAACATGTGGGAGGCCTAT+GGG + chr2.3:35971102-35971121 MS.gene78185:CDS 50.0%
GTCCTGTAAGCCAGAATCTC+CGG - chr2.3:35971959-35971978 None:intergenic 50.0%
GTGCCAAACTCCTCAACAAG+AGG - chr2.3:35972167-35972186 None:intergenic 50.0%
GTGCCTCTTGTTGAGGAGTT+TGG + chr2.3:35972161-35972180 MS.gene78185:CDS 50.0%
GTGGATGTCGATCCTAACAC+TGG + chr2.3:35971264-35971283 MS.gene78185:CDS 50.0%
TAGGCCTCCCACATGTTTCT+TGG - chr2.3:35971101-35971120 None:intergenic 50.0%
! AGAGGCAAAACAGGAGGTAC+TGG - chr2.3:35972101-35972120 None:intergenic 50.0%
! AGATTAGACACGTACCGGTC+TGG - chr2.3:35970812-35970831 None:intergenic 50.0%
! GACCTCGAGGAACGAGTTTT+GGG + chr2.3:35972040-35972059 MS.gene78185:CDS 50.0%
! GTACCTCCTGTTTTGCCTCT+TGG + chr2.3:35972101-35972120 MS.gene78185:CDS 50.0%
!! AAAACAGGAGGTACTGGTGG+TGG - chr2.3:35972095-35972114 None:intergenic 50.0%
!! ATCCGGAGATTCTGGCTTAC+AGG + chr2.3:35971954-35971973 MS.gene78185:CDS 50.0%
!! CAGTGTCGACGTGCTTTCAT+AGG + chr2.3:35970943-35970962 MS.gene78185:intron 50.0%
ACGCCAGCAAGAAACCCGAA+AGG - chr2.3:35971246-35971265 None:intergenic 55.0%
AGAGGCTGTGCCTCTTGTTG+AGG + chr2.3:35972154-35972173 MS.gene78185:CDS 55.0%
AGTGTAAGGCCCTCCACCAA+TGG - chr2.3:35970717-35970736 None:intergenic 55.0%
ATTGGTGGAGGGCCTTACAC+TGG + chr2.3:35970716-35970735 MS.gene78185:CDS 55.0%
CACCCAAAACTCGTTCCTCG+AGG - chr2.3:35972045-35972064 None:intergenic 55.0%
CGCCAGCAAGAAACCCGAAA+GGG - chr2.3:35971245-35971264 None:intergenic 55.0%
GACTCAGGGCCTGTTAGTGA+TGG - chr2.3:35970680-35970699 None:intergenic 55.0%
GGGGTAGCAGTAAGCAGCAA+TGG + chr2.3:35971894-35971913 MS.gene78185:CDS 55.0%
TCAGGGCCTGTTAGTGATGG+TGG - chr2.3:35970677-35970696 None:intergenic 55.0%
! GGACCTCGAGGAACGAGTTT+TGG + chr2.3:35972039-35972058 MS.gene78185:CDS 55.0%
!! AGCCCTTTCGGGTTTCTTGC+TGG + chr2.3:35971240-35971259 MS.gene78185:CDS 55.0%
!! GGCAAAACAGGAGGTACTGG+TGG - chr2.3:35972098-35972117 None:intergenic 55.0%
!! TTTCGGGTTTCTTGCTGGCG+TGG + chr2.3:35971245-35971264 MS.gene78185:CDS 55.0%
!!! CTCGAGGAACGAGTTTTGGG+TGG + chr2.3:35972043-35972062 MS.gene78185:CDS 55.0%
!! ACAGGAGGTACTGGTGGTGG+TGG - chr2.3:35972092-35972111 None:intergenic 60.0%
!! GGTGGTGGTGGTGACCCAAA+AGG - chr2.3:35972080-35972099 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 35970572 35972274 35970572 ID=MS.gene78185
chr2.3 mRNA 35970572 35972274 35970572 ID=MS.gene78185.t1;Parent=MS.gene78185
chr2.3 exon 35970572 35970816 35970572 ID=MS.gene78185.t1.exon1;Parent=MS.gene78185.t1
chr2.3 CDS 35970572 35970816 35970572 ID=cds.MS.gene78185.t1;Parent=MS.gene78185.t1
chr2.3 exon 35971056 35971328 35971056 ID=MS.gene78185.t1.exon2;Parent=MS.gene78185.t1
chr2.3 CDS 35971056 35971328 35971056 ID=cds.MS.gene78185.t1;Parent=MS.gene78185.t1
chr2.3 exon 35971782 35972274 35971782 ID=MS.gene78185.t1.exon3;Parent=MS.gene78185.t1
chr2.3 CDS 35971782 35972274 35971782 ID=cds.MS.gene78185.t1;Parent=MS.gene78185.t1
Gene Sequence

>MS.gene78185

ATGTCTAGCAACATGGCTGTTATCACTGGGATCTTAATCTCCCTCATACTCTATTCATCATCTATAGTTGCCTATTGCAAATTACTAGACAGACTCTATCTTCCACCATCACTAACAGGCCCTGAGTCCCTAGCATTTGATTCCATTGGTGGAGGGCCTTACACTGGTGTTTCTGATGGAAGAATTCTAAAATATGATAAAGAACGTTCTAGTTTCCTTGAGTTTGCTCACATTTCACCAGACCGGTACGTGTCTAATCTAAAATATGGTTTGAATCTCCGTCAAGAAAGATGTTCACATTTAGTATTGAACTTGACCATATAGGTTTAATCTGCTCTAAACTTTGTCAGCGTTTATGTTTTTGACATTAGCAGTGTCGACGTGCTTTCATAGGGTTTCACTCCAAAATATAATACATAATAATTCTTTTTATGTAATTATAGTCATAGTCGGTTAAGGTTAAACCATGTCATTGTTGTTACAGGAACAAAACAATTTGTGATGGAATTTTAGACTTCTCAGAACTCCAAGAAACATGTGGGAGGCCTATGGGGTTGAGTTACAATTACAAGACAAAGGAATTATATATAGCTGATGCTTATTATGGACTTGTGAAGGTTTCTTATGATGGAGGTGCTGCAACACAACTTGTTTCTAATGTACTAGGCAGCCCTTTCGGGTTTCTTGCTGGCGTGGATGTCGATCCTAACACTGGAATCGTTTATTTCACGGAAGCTAGCTATTATCACAAGATCAGGTAATCCATTCTATTCTATCTCATGATTTTTCCATGTTTTTTCGCATTGCTATGCTTGATGATGATGTTAGCAGTGTGAAATGAACAATGTGAATGAGTTTGTGAACTCTGTACATTTGTGTATCTCAATTTGCCATGCCTGAATCATCAAGTCATCATGATCTTGAGATTCAGCACAAGTAACTTTTTAGACCTATAATATTCTCTTCTCAAAGCAAGTATATTAAAGGAAATAATAGCTTATTTAAGCGTCTAATAATTCATAAATCAATTTTTGCCTATACACTTTATAAACGCAACGATAATACTATGTTTCAACAATAAAATTCTTATGTTATTTTAATGATATGTTGCATTTTGAATTGATAGTAGTGAGTTCACACAGGAAATGTTCAATGTAGCAAATATTCTCTCTAGTCTTGGCCGATTAAAATTGTGACCTAAATTTTGCAGGGATCTCCAGAAACTGCTTAATAGCCGAGATATTTTTTCTGGAAGCCTGTTCAGATACAATCCAATAACGAAACAAACCACATTGTTGCTCCGTAATCTAGCTATGGCAACAGGGGTAGCAGTAAGCAGCAATGGTTCATTTGTCCTTGTAAGTGAGTACAAGGCGAATAGAATCCGGAGATTCTGGCTTACAGGACCAAATGCATATACTTCAGATATATTCTTGTGGCTTCCAGGGAGACCAGATAACATCAAAAGGACCTCGAGGAACGAGTTTTGGGTGGCAGTGAATTATCCTTTTGGGTCACCACCACCACCAGTACCTCCTGTTTTGCCTCTTGGACTAAGAATCAATGAGCAAGGTTTAATTTTAGAGGCTGTGCCTCTTGTTGAGGAGTTTGGCACTGGATCAGTCAGTGAAGTTCATGAAGCTGAGGGAAAACTCTATGCTACATCGTTGCGTGATAGCTATGTTAACATTCTCACAGTATAG
Protein sequence

>MS.gene78185.t1

MSSNMAVITGILISLILYSSSIVAYCKLLDRLYLPPSLTGPESLAFDSIGGGPYTGVSDGRILKYDKERSSFLEFAHISPDRNKTICDGILDFSELQETCGRPMGLSYNYKTKELYIADAYYGLVKVSYDGGAATQLVSNVLGSPFGFLAGVDVDPNTGIVYFTEASYYHKIRDLQKLLNSRDIFSGSLFRYNPITKQTTLLLRNLAMATGVAVSSNGSFVLVSEYKANRIRRFWLTGPNAYTSDIFLWLPGRPDNIKRTSRNEFWVAVNYPFGSPPPPVPPVLPLGLRINEQGLILEAVPLVEEFGTGSVSEVHEAEGKLYATSLRDSYVNILTV