Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033015.t1 | XP_003609164.2 | 96.1 | 336 | 13 | 0 | 1 | 336 | 1 | 336 | 6.00E-179 | 636.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033015.t1 | Q4V3D9 | 40.5 | 321 | 164 | 4 | 38 | 334 | 55 | 372 | 8.7e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033015.t1 | G7JT39 | 96.1 | 336 | 13 | 0 | 1 | 336 | 1 | 336 | 4.3e-179 | 636.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033015 | MS.gene35843 | PPI |
| MS.gene78183 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene033012 | PPI |
| MS.gene033015 | MS.gene68976 | PPI |
| MS.gene033015 | MS.gene025506 | PPI |
| MS.gene08297 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene78185 | PPI |
| MS.gene033015 | MS.gene08297 | PPI |
| MS.gene033015 | MS.gene023327 | PPI |
| MS.gene033015 | MS.gene038810 | PPI |
| MS.gene08295 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene68977 | PPI |
| MS.gene033015 | MS.gene045791 | PPI |
| MS.gene033015 | MS.gene83236 | PPI |
| MS.gene044500 | MS.gene033015 | PPI |
| MS.gene023328 | MS.gene033015 | PPI |
| MS.gene83238 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene044501 | PPI |
| MS.gene033026 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene34908 | PPI |
| MS.gene045793 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene033013 | PPI |
| MS.gene033015 | MS.gene063529 | PPI |
| MS.gene033015 | MS.gene044502 | PPI |
| MS.gene033015 | MS.gene044490 | PPI |
| MS.gene050115 | MS.gene033015 | PPI |
| MS.gene033015 | MS.gene038798 | PPI |
| MS.gene033015 | MS.gene68975 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033015.t1 | MTR_4g112670 | 96.131 | 336 | 13 | 0 | 1 | 336 | 1 | 336 | 0.0 | 659 |
| MS.gene033015.t1 | MTR_4g112650 | 77.612 | 335 | 71 | 2 | 2 | 334 | 1 | 333 | 0.0 | 526 |
| MS.gene033015.t1 | MTR_4g112630 | 71.726 | 336 | 80 | 2 | 2 | 334 | 1 | 324 | 2.06e-171 | 479 |
| MS.gene033015.t1 | MTR_4g112620 | 68.639 | 338 | 63 | 4 | 1 | 334 | 1 | 299 | 2.36e-159 | 447 |
| MS.gene033015.t1 | MTR_0003s0530 | 95.028 | 181 | 9 | 0 | 146 | 326 | 1 | 181 | 9.68e-124 | 353 |
| MS.gene033015.t1 | MTR_2g058450 | 55.340 | 309 | 135 | 2 | 27 | 334 | 28 | 334 | 1.93e-112 | 330 |
| MS.gene033015.t1 | MTR_7g490330 | 40.909 | 330 | 169 | 4 | 11 | 334 | 14 | 323 | 7.84e-79 | 244 |
| MS.gene033015.t1 | MTR_7g490350 | 39.130 | 322 | 163 | 3 | 39 | 334 | 53 | 367 | 1.66e-77 | 242 |
| MS.gene033015.t1 | MTR_5g091980 | 41.176 | 306 | 158 | 3 | 29 | 334 | 38 | 321 | 1.48e-73 | 230 |
| MS.gene033015.t1 | MTR_2g058410 | 54.310 | 232 | 103 | 2 | 103 | 333 | 1 | 230 | 1.42e-72 | 224 |
| MS.gene033015.t1 | MTR_7g090300 | 40.373 | 322 | 161 | 6 | 38 | 334 | 52 | 367 | 2.14e-72 | 229 |
| MS.gene033015.t1 | MTR_4g050190 | 37.612 | 335 | 175 | 7 | 29 | 334 | 60 | 389 | 9.64e-71 | 225 |
| MS.gene033015.t1 | MTR_2g087780 | 37.574 | 338 | 178 | 7 | 26 | 334 | 60 | 393 | 1.56e-70 | 225 |
| MS.gene033015.t1 | MTR_7g090320 | 38.323 | 334 | 174 | 7 | 29 | 330 | 48 | 381 | 1.50e-69 | 222 |
| MS.gene033015.t1 | MTR_7g090310 | 38.245 | 319 | 166 | 5 | 39 | 326 | 58 | 376 | 5.78e-66 | 213 |
| MS.gene033015.t1 | MTR_2g099030 | 33.832 | 334 | 192 | 4 | 27 | 332 | 70 | 402 | 6.91e-62 | 202 |
| MS.gene033015.t1 | MTR_4g112840 | 78.000 | 100 | 22 | 0 | 173 | 272 | 56 | 155 | 1.25e-49 | 164 |
| MS.gene033015.t1 | MTR_5g077620 | 73.563 | 87 | 21 | 2 | 4 | 90 | 1 | 85 | 1.78e-34 | 124 |
| MS.gene033015.t1 | MTR_5g077620 | 67.442 | 43 | 14 | 0 | 280 | 322 | 76 | 118 | 1.01e-12 | 65.5 |
| MS.gene033015.t1 | MTR_8g074170 | 31.907 | 257 | 151 | 5 | 39 | 295 | 78 | 310 | 2.41e-32 | 124 |
| MS.gene033015.t1 | MTR_8g074270 | 31.818 | 264 | 152 | 6 | 39 | 302 | 78 | 313 | 1.53e-30 | 119 |
| MS.gene033015.t1 | MTR_8g074210 | 33.766 | 231 | 129 | 5 | 37 | 267 | 76 | 282 | 3.06e-29 | 115 |
| MS.gene033015.t1 | MTR_2g042420 | 29.675 | 246 | 149 | 9 | 110 | 334 | 105 | 347 | 6.55e-25 | 103 |
| MS.gene033015.t1 | MTR_2g042430 | 36.478 | 159 | 97 | 3 | 110 | 267 | 124 | 279 | 9.05e-25 | 103 |
| MS.gene033015.t1 | MTR_2g042370 | 32.275 | 189 | 118 | 4 | 110 | 297 | 112 | 291 | 1.72e-24 | 102 |
| MS.gene033015.t1 | MTR_2g058430 | 50.495 | 101 | 41 | 1 | 76 | 176 | 43 | 134 | 5.49e-22 | 94.0 |
| MS.gene033015.t1 | MTR_8g074320 | 38.583 | 127 | 73 | 3 | 100 | 223 | 95 | 219 | 3.00e-19 | 85.5 |
| MS.gene033015.t1 | MTR_1g075865 | 38.095 | 105 | 64 | 1 | 151 | 255 | 7 | 110 | 1.37e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033015.t1 | AT3G57030 | 40.498 | 321 | 164 | 4 | 38 | 334 | 55 | 372 | 3.86e-78 | 244 |
| MS.gene033015.t1 | AT1G08470 | 38.739 | 333 | 173 | 6 | 29 | 334 | 59 | 387 | 1.17e-74 | 235 |
| MS.gene033015.t1 | AT1G74020 | 42.718 | 309 | 163 | 6 | 28 | 333 | 27 | 324 | 3.65e-74 | 232 |
| MS.gene033015.t1 | AT1G74010 | 42.071 | 309 | 164 | 7 | 28 | 333 | 26 | 322 | 6.08e-72 | 226 |
| MS.gene033015.t1 | AT1G74000 | 41.100 | 309 | 168 | 6 | 28 | 333 | 29 | 326 | 2.62e-70 | 222 |
| MS.gene033015.t1 | AT3G57010 | 41.803 | 244 | 136 | 2 | 26 | 269 | 41 | 278 | 1.91e-69 | 221 |
| MS.gene033015.t1 | AT5G22020 | 36.826 | 334 | 178 | 8 | 29 | 334 | 65 | 393 | 4.25e-69 | 221 |
| MS.gene033015.t1 | AT5G22020 | 36.826 | 334 | 178 | 8 | 29 | 334 | 65 | 393 | 4.25e-69 | 221 |
| MS.gene033015.t1 | AT5G22020 | 36.826 | 334 | 178 | 8 | 29 | 334 | 65 | 393 | 4.25e-69 | 221 |
| MS.gene033015.t1 | AT3G57020 | 41.772 | 237 | 132 | 1 | 33 | 269 | 47 | 277 | 2.37e-67 | 216 |
| MS.gene033015.t1 | AT2G41290 | 35.544 | 377 | 197 | 11 | 1 | 334 | 1 | 374 | 3.26e-63 | 205 |
| MS.gene033015.t1 | AT3G57020 | 39.241 | 237 | 124 | 1 | 33 | 269 | 47 | 263 | 1.77e-61 | 200 |
| MS.gene033015.t1 | AT2G41300 | 34.314 | 306 | 171 | 3 | 46 | 327 | 85 | 384 | 1.35e-60 | 199 |
| MS.gene033015.t1 | AT3G59530 | 39.095 | 243 | 142 | 3 | 30 | 267 | 75 | 316 | 1.67e-57 | 191 |
| MS.gene033015.t1 | AT3G59530 | 39.095 | 243 | 142 | 3 | 30 | 267 | 75 | 316 | 1.67e-57 | 191 |
| MS.gene033015.t1 | AT3G59530 | 39.095 | 243 | 142 | 3 | 30 | 267 | 75 | 316 | 1.67e-57 | 191 |
| MS.gene033015.t1 | AT3G51420 | 27.566 | 341 | 199 | 12 | 17 | 332 | 40 | 357 | 3.97e-27 | 110 |
| MS.gene033015.t1 | AT3G51440 | 28.990 | 307 | 166 | 10 | 17 | 310 | 40 | 307 | 1.61e-26 | 108 |
| MS.gene033015.t1 | AT3G51430 | 28.431 | 306 | 182 | 10 | 40 | 330 | 70 | 353 | 3.65e-25 | 104 |
| MS.gene033015.t1 | AT3G51430 | 28.571 | 308 | 181 | 10 | 40 | 330 | 70 | 355 | 3.94e-25 | 104 |
| MS.gene033015.t1 | AT3G51450 | 28.674 | 279 | 148 | 9 | 40 | 309 | 70 | 306 | 5.70e-24 | 101 |
Find 83 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATGTAGCCGATGCTTATT+TGG | 0.184441 | 8.4:-17490072 | MS.gene033015:CDS |
| GGAATTCAGGAGGCCAATTT+TGG | 0.191849 | 8.4:-17489543 | MS.gene033015:CDS |
| GAATTCCTCTTGATGTTATT+TGG | 0.192006 | 8.4:+17489559 | None:intergenic |
| AAATATTTAGTTACCTGTTT+GGG | 0.255785 | 8.4:+17490460 | None:intergenic |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.272786 | 8.4:+17490012 | None:intergenic |
| TCAAATATTCATGTTGAATA+TGG | 0.275318 | 8.4:-17490703 | None:intergenic |
| TATGCACTGAAATCCAAAAT+TGG | 0.298675 | 8.4:+17489530 | None:intergenic |
| TATGTAGCCGATGCTTATTT+GGG | 0.314357 | 8.4:-17490071 | MS.gene033015:CDS |
| GCATCTCTTGCTGCTGAGTA+TGG | 0.315822 | 8.4:-17489415 | MS.gene033015:CDS |
| AATAACATCAAGAGGAATTC+AGG | 0.320309 | 8.4:-17489556 | MS.gene033015:CDS |
| GAACTATTCATGCTACTTAC+TGG | 0.331413 | 8.4:-17489586 | MS.gene033015:CDS |
| TGCTTATTTGGGGCTTGTTA+AGG | 0.364540 | 8.4:-17490060 | MS.gene033015:CDS |
| GAAATATTTAGTTACCTGTT+TGG | 0.366521 | 8.4:+17490459 | None:intergenic |
| CTCCACTAGTTAGCAGTGTT+TGG | 0.373816 | 8.4:+17489791 | None:intergenic |
| ATGGCCTTCCACACGTTGCT+TGG | 0.383466 | 8.4:+17490129 | None:intergenic |
| GCCGTACGCCTTGGAGATAT+TGG | 0.389151 | 8.4:+17489487 | None:intergenic |
| GCTAACTAGTGGAGATAGTT+CGG | 0.406368 | 8.4:-17489782 | MS.gene033015:CDS |
| GCAACGTGTGGAAGGCCATT+AGG | 0.415617 | 8.4:-17490125 | MS.gene033015:CDS |
| TTGTGCAGGTCCAACTAATT+GGG | 0.417683 | 8.4:+17490013 | None:intergenic |
| AAAACAATGCTTACTTGAGT+TGG | 0.418022 | 8.4:+17489907 | None:intergenic |
| TGCTTAGCAACACCGTCGTT+TGG | 0.427505 | 8.4:+17489728 | None:intergenic |
| TGTGGAAGGCCATTAGGATT+GGG | 0.448985 | 8.4:-17490119 | MS.gene033015:CDS |
| GTGTGGAAGGCCATTAGGAT+TGG | 0.449578 | 8.4:-17490120 | MS.gene033015:CDS |
| TTGGGTTTCAATCATCAAAC+AGG | 0.453284 | 8.4:-17490101 | MS.gene033015:CDS |
| AGTTCTGATGAATTTGCTCT+TGG | 0.454617 | 8.4:+17489604 | None:intergenic |
| CTAACTAGTGGAGATAGTTC+GGG | 0.455356 | 8.4:-17489781 | MS.gene033015:CDS |
| AGCAATCTTGCAATGCCATC+TGG | 0.458768 | 8.4:-17489709 | MS.gene033015:CDS |
| AAATATAATGGTCCAGATGT+AGG | 0.459994 | 8.4:-17490507 | MS.gene033015:CDS |
| TACTCTTGAACCTCGCTAGC+TGG | 0.463016 | 8.4:+17489385 | None:intergenic |
| ATGCTTACACTTCCCCAAAC+AGG | 0.470526 | 8.4:-17490473 | MS.gene033015:intron |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 8.4:-17490540 | MS.gene033015:CDS |
| TGGTCCAGATGTAGGTTTCA+AGG | 0.477646 | 8.4:-17490499 | MS.gene033015:CDS |
| AAATAAACGATTCCAGTGTC+AGG | 0.481590 | 8.4:+17489951 | None:intergenic |
| TATTCCTTGAAACCTACATC+TGG | 0.482961 | 8.4:+17490495 | None:intergenic |
| GCCAATATCTCCAAGGCGTA+CGG | 0.490469 | 8.4:-17489488 | MS.gene033015:CDS |
| ATTCAAAGAGTGTGGCTGAC+AGG | 0.491551 | 8.4:-17489628 | MS.gene033015:CDS |
| TGGGTTACATTCCCTCCATC+GGG | 0.492632 | 8.4:+17490032 | None:intergenic |
| CGAGGCAAAGCCGTACGCCT+TGG | 0.499175 | 8.4:+17489478 | None:intergenic |
| TGCTAGCATAAGAAGCAAGC+AGG | 0.502038 | 8.4:+17489338 | None:intergenic |
| AGTAATATAGCTACTGATGA+TGG | 0.504220 | 8.4:+17490633 | None:intergenic |
| TGATTGAAACCCAATCCTAA+TGG | 0.505270 | 8.4:+17490110 | None:intergenic |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 8.4:+17490540 | None:intergenic |
| ACCGTCGTTTGGTTGGTGCT+AGG | 0.509218 | 8.4:+17489739 | None:intergenic |
| TACAATGGAAAACTCTATGC+TGG | 0.510601 | 8.4:-17489364 | MS.gene033015:CDS |
| TTGGGTTACATTCCCTCCAT+CGG | 0.513844 | 8.4:+17490031 | None:intergenic |
| TTATCAAATGCAAGTGACTC+AGG | 0.517239 | 8.4:+17490576 | None:intergenic |
| GGGAATGTAACCCAATTAGT+TGG | 0.517432 | 8.4:-17490023 | MS.gene033015:CDS |
| CTTGTTAAGGTTAGTCCCGA+TGG | 0.524295 | 8.4:-17490047 | MS.gene033015:CDS |
| TAGCAACACCGTCGTTTGGT+TGG | 0.526062 | 8.4:+17489732 | None:intergenic |
| ATGGTAGAATTGCCTTGTGC+AGG | 0.528027 | 8.4:+17489999 | None:intergenic |
| TCAGGTCCTGTCACTGGTGA+TGG | 0.530888 | 8.4:+17490594 | None:intergenic |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.531219 | 8.4:+17490588 | None:intergenic |
| AATTCTACCATGTTTGCTGA+TGG | 0.539707 | 8.4:-17489987 | MS.gene033015:CDS |
| TTTGAAAATTCTTCCATCAG+AGG | 0.540669 | 8.4:+17490527 | None:intergenic |
| CAGTCCAAGCAACGTGTGGA+AGG | 0.541156 | 8.4:-17490133 | MS.gene033015:CDS |
| GGTGTGGCAGTAAGCAAAGA+TGG | 0.552392 | 8.4:-17489688 | MS.gene033015:CDS |
| TTGCTTACTGCCACACCAGA+TGG | 0.555964 | 8.4:+17489694 | None:intergenic |
| ATCTAAACCATCAGCAAACA+TGG | 0.560082 | 8.4:+17489980 | None:intergenic |
| AGGCGTACGGCTTTGCCTCG+TGG | 0.561801 | 8.4:-17489475 | MS.gene033015:CDS |
| CAGCTACCATCACCAGTGAC+AGG | 0.576598 | 8.4:-17490600 | MS.gene033015:CDS |
| GCTAGCATAAGAAGCAAGCA+GGG | 0.580108 | 8.4:+17489339 | None:intergenic |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 8.4:-17490552 | MS.gene033015:CDS |
| GAAGACCAAATAACATCAAG+AGG | 0.582125 | 8.4:-17489564 | MS.gene033015:CDS |
| TTGGAAGTTAGTGCTAGCTA+TGG | 0.588516 | 8.4:+17489926 | None:intergenic |
| AACAAGCCCCAAATAAGCAT+CGG | 0.596398 | 8.4:+17490064 | None:intergenic |
| ATTCATGTTGAATATGGCAA+TGG | 0.597792 | 8.4:-17490697 | None:intergenic |
| TACCAAACACTGCTAACTAG+TGG | 0.600039 | 8.4:-17489793 | MS.gene033015:CDS |
| CAATTAGTTGGACCTGCACA+AGG | 0.606283 | 8.4:-17490011 | MS.gene033015:CDS |
| GTTAAGGTTAGTCCCGATGG+AGG | 0.606836 | 8.4:-17490044 | MS.gene033015:CDS |
| CAAACAGAATTCAAAGAGTG+TGG | 0.607750 | 8.4:-17489636 | MS.gene033015:CDS |
| AGGAACAAGACAGTCTGTGA+TGG | 0.611137 | 8.4:-17490173 | MS.gene033015:CDS |
| AATATTTAGTTACCTGTTTG+GGG | 0.612782 | 8.4:+17490461 | None:intergenic |
| TCTTGCAATGCCATCTGGTG+TGG | 0.621845 | 8.4:-17489704 | MS.gene033015:CDS |
| TTAAGGTTAGTCCCGATGGA+GGG | 0.624076 | 8.4:-17490043 | MS.gene033015:CDS |
| TCAGCAGTCCAAGCAACGTG+TGG | 0.630269 | 8.4:-17490137 | MS.gene033015:CDS |
| TTAGATGTAGATCCTGACAC+TGG | 0.631098 | 8.4:-17489963 | MS.gene033015:CDS |
| TGGTACTGAACCAGCTAGCG+AGG | 0.634663 | 8.4:-17489395 | MS.gene033015:CDS |
| ATGTAGCCGATGCTTATTTG+GGG | 0.636553 | 8.4:-17490070 | MS.gene033015:CDS |
| AGCGAGGTTCAAGAGTACAA+TGG | 0.665206 | 8.4:-17489379 | MS.gene033015:CDS |
| TAGGACTGCCAATATCTCCA+AGG | 0.665475 | 8.4:-17489495 | MS.gene033015:CDS |
| AACATCAAGAGGAATTCAGG+AGG | 0.674601 | 8.4:-17489553 | MS.gene033015:CDS |
| TCCTAGCACCAACCAAACGA+CGG | 0.704747 | 8.4:-17489740 | MS.gene033015:CDS |
| TCAGACACTCTGACTCCACG+AGG | 0.756470 | 8.4:+17489460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTACTTTATTTTTTGTA+GGG | - | chr8.4:17490199-17490218 | MS.gene033015:intron | 15.0% |
| !!! | TAGTACTTTTACAAAATAAA+TGG | + | chr8.4:17489633-17489652 | None:intergenic | 15.0% |
| !! | AAATATTTAGTTACCTGTTT+GGG | + | chr8.4:17489560-17489579 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTATTTGGGATC+AGG | - | chr8.4:17489824-17489843 | MS.gene033015:intron | 20.0% |
| !!! | CACTTTACTTTATTTTTTGT+AGG | - | chr8.4:17490198-17490217 | MS.gene033015:intron | 20.0% |
| !!! | GGAAGAATTTTCAAATATAA+TGG | - | chr8.4:17489498-17489517 | MS.gene033015:CDS | 20.0% |
| ! | AATATTTAGTTACCTGTTTG+GGG | + | chr8.4:17489559-17489578 | None:intergenic | 25.0% |
| ! | GAAATATTTAGTTACCTGTT+TGG | + | chr8.4:17489561-17489580 | None:intergenic | 25.0% |
| ! | TCACTTGCATTTGATAAAAA+CGG | - | chr8.4:17489447-17489466 | MS.gene033015:CDS | 25.0% |
| ! | TTGTTATAGTAATGCAGAAT+TGG | + | chr8.4:17490173-17490192 | None:intergenic | 25.0% |
| !! | TCTTATGCTAGCATTTTTAT+CGG | - | chr8.4:17490689-17490708 | MS.gene033015:CDS | 25.0% |
| AAAACAATGCTTACTTGAGT+TGG | + | chr8.4:17490113-17490132 | None:intergenic | 30.0% | |
| AAATATAATGGTCCAGATGT+AGG | - | chr8.4:17489510-17489529 | MS.gene033015:CDS | 30.0% | |
| AAATGGTCACTTAACTCATT+AGG | + | chr8.4:17489616-17489635 | None:intergenic | 30.0% | |
| AATAACATCAAGAGGAATTC+AGG | - | chr8.4:17490461-17490480 | MS.gene033015:intron | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | + | chr8.4:17489387-17489406 | None:intergenic | 30.0% | |
| ATATAAACACAAAGTTCGTG+AGG | + | chr8.4:17489753-17489772 | None:intergenic | 30.0% | |
| GAATTCCTCTTGATGTTATT+TGG | + | chr8.4:17490461-17490480 | None:intergenic | 30.0% | |
| TATGCACTGAAATCCAAAAT+TGG | + | chr8.4:17490490-17490509 | None:intergenic | 30.0% | |
| TTTGAAAATTCTTCCATCAG+AGG | + | chr8.4:17489493-17489512 | None:intergenic | 30.0% | |
| ! | ATTTCAGTGCATAGTGTTTT+AGG | - | chr8.4:17490497-17490516 | MS.gene033015:CDS | 30.0% |
| AAATAAACGATTCCAGTGTC+AGG | + | chr8.4:17490069-17490088 | None:intergenic | 35.0% | |
| ATCTAAACCATCAGCAAACA+TGG | + | chr8.4:17490040-17490059 | None:intergenic | 35.0% | |
| CAAACAGAATTCAAAGAGTG+TGG | - | chr8.4:17490381-17490400 | MS.gene033015:intron | 35.0% | |
| GAAGACCAAATAACATCAAG+AGG | - | chr8.4:17490453-17490472 | MS.gene033015:intron | 35.0% | |
| GCATTTGATAAAAACGGTGA+AGG | - | chr8.4:17489453-17489472 | MS.gene033015:CDS | 35.0% | |
| GTAATGCAGAATTGGCATTT+AGG | + | chr8.4:17490165-17490184 | None:intergenic | 35.0% | |
| TACAATGGAAAACTCTATGC+TGG | - | chr8.4:17490653-17490672 | MS.gene033015:CDS | 35.0% | |
| TATGTAGCCGATGCTTATTT+GGG | - | chr8.4:17489946-17489965 | MS.gene033015:CDS | 35.0% | |
| TATTCCTTGAAACCTACATC+TGG | + | chr8.4:17489525-17489544 | None:intergenic | 35.0% | |
| TGATTGAAACCCAATCCTAA+TGG | + | chr8.4:17489910-17489929 | None:intergenic | 35.0% | |
| TTATCAAATGCAAGTGACTC+AGG | + | chr8.4:17489444-17489463 | None:intergenic | 35.0% | |
| TTGGGTTTCAATCATCAAAC+AGG | - | chr8.4:17489916-17489935 | MS.gene033015:intron | 35.0% | |
| ! | AATTCTACCATGTTTGCTGA+TGG | - | chr8.4:17490030-17490049 | MS.gene033015:CDS | 35.0% |
| ! | AGTTCTGATGAATTTGCTCT+TGG | + | chr8.4:17490416-17490435 | None:intergenic | 35.0% |
| ! | GAACTATTCATGCTACTTAC+TGG | - | chr8.4:17490431-17490450 | MS.gene033015:intron | 35.0% |
| !!! | GTGCATAGTGTTTTAGGATT+AGG | - | chr8.4:17490503-17490522 | MS.gene033015:CDS | 35.0% |
| AACAAGCCCCAAATAAGCAT+CGG | + | chr8.4:17489956-17489975 | None:intergenic | 40.0% | |
| AACATCAAGAGGAATTCAGG+AGG | - | chr8.4:17490464-17490483 | MS.gene033015:intron | 40.0% | |
| ATGTAGCCGATGCTTATTTG+GGG | - | chr8.4:17489947-17489966 | MS.gene033015:CDS | 40.0% | |
| CTAACTAGTGGAGATAGTTC+GGG | - | chr8.4:17490236-17490255 | MS.gene033015:intron | 40.0% | |
| GCTAACTAGTGGAGATAGTT+CGG | - | chr8.4:17490235-17490254 | MS.gene033015:intron | 40.0% | |
| GGGAATGTAACCCAATTAGT+TGG | - | chr8.4:17489994-17490013 | MS.gene033015:CDS | 40.0% | |
| GTATGTAGCCGATGCTTATT+TGG | - | chr8.4:17489945-17489964 | MS.gene033015:CDS | 40.0% | |
| TACCAAACACTGCTAACTAG+TGG | - | chr8.4:17490224-17490243 | MS.gene033015:intron | 40.0% | |
| TTAGATGTAGATCCTGACAC+TGG | - | chr8.4:17490054-17490073 | MS.gene033015:CDS | 40.0% | |
| TTGGAAGTTAGTGCTAGCTA+TGG | + | chr8.4:17490094-17490113 | None:intergenic | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | + | chr8.4:17490007-17490026 | None:intergenic | 40.0% | |
| !! | TGCTTATTTGGGGCTTGTTA+AGG | - | chr8.4:17489957-17489976 | MS.gene033015:CDS | 40.0% |
| AACGGTGAAGGACCTTATGT+TGG | - | chr8.4:17489465-17489484 | MS.gene033015:CDS | 45.0% | |
| AGCAATCTTGCAATGCCATC+TGG | - | chr8.4:17490308-17490327 | MS.gene033015:intron | 45.0% | |
| AGGAACAAGACAGTCTGTGA+TGG | - | chr8.4:17489844-17489863 | MS.gene033015:intron | 45.0% | |
| ATGCTTACACTTCCCCAAAC+AGG | - | chr8.4:17489544-17489563 | MS.gene033015:CDS | 45.0% | |
| ATGGTAGAATTGCCTTGTGC+AGG | + | chr8.4:17490021-17490040 | None:intergenic | 45.0% | |
| CAATTAGTTGGACCTGCACA+AGG | - | chr8.4:17490006-17490025 | MS.gene033015:CDS | 45.0% | |
| CTCCACTAGTTAGCAGTGTT+TGG | + | chr8.4:17490229-17490248 | None:intergenic | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | + | chr8.4:17490008-17490027 | None:intergenic | 45.0% | |
| GCTAGCATAAGAAGCAAGCA+GGG | + | chr8.4:17490681-17490700 | None:intergenic | 45.0% | |
| TAGGACTGCCAATATCTCCA+AGG | - | chr8.4:17490522-17490541 | MS.gene033015:CDS | 45.0% | |
| TGCTAGCATAAGAAGCAAGC+AGG | + | chr8.4:17490682-17490701 | None:intergenic | 45.0% | |
| TGGTCCAGATGTAGGTTTCA+AGG | - | chr8.4:17489518-17489537 | MS.gene033015:CDS | 45.0% | |
| TGTGGAAGGCCATTAGGATT+GGG | - | chr8.4:17489898-17489917 | MS.gene033015:intron | 45.0% | |
| TTGGGTTACATTCCCTCCAT+CGG | + | chr8.4:17489989-17490008 | None:intergenic | 45.0% | |
| ! | AGCGAGGTTCAAGAGTACAA+TGG | - | chr8.4:17490638-17490657 | MS.gene033015:CDS | 45.0% |
| ! | ATTCAAAGAGTGTGGCTGAC+AGG | - | chr8.4:17490389-17490408 | MS.gene033015:intron | 45.0% |
| ! | CTTGTTAAGGTTAGTCCCGA+TGG | - | chr8.4:17489970-17489989 | MS.gene033015:CDS | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | - | chr8.4:17490474-17490493 | MS.gene033015:CDS | 45.0% |
| ! | TTAAGGTTAGTCCCGATGGA+GGG | - | chr8.4:17489974-17489993 | MS.gene033015:CDS | 45.0% |
| !! | GTATAATAAAAAAAAAAAAA+AGG | + | chr8.4:17489702-17489721 | None:intergenic | 5.0% |
| !!! | AGAAATAATTTTTTTTTATT+TGG | - | chr8.4:17489817-17489836 | MS.gene033015:intron | 5.0% |
| !!! | GAAATAATTTTTTTTTATTT+GGG | - | chr8.4:17489818-17489837 | MS.gene033015:intron | 5.0% |
| CCATCAGAGGAGCCAACATA+AGG | + | chr8.4:17489480-17489499 | None:intergenic | 50.0% | |
| GCATCTCTTGCTGCTGAGTA+TGG | - | chr8.4:17490602-17490621 | MS.gene033015:CDS | 50.0% | |
| GCCAATATCTCCAAGGCGTA+CGG | - | chr8.4:17490529-17490548 | MS.gene033015:CDS | 50.0% | |
| GGTGTGGCAGTAAGCAAAGA+TGG | - | chr8.4:17490329-17490348 | MS.gene033015:intron | 50.0% | |
| GTGTGGAAGGCCATTAGGAT+TGG | - | chr8.4:17489897-17489916 | MS.gene033015:intron | 50.0% | |
| TACTCTTGAACCTCGCTAGC+TGG | + | chr8.4:17490635-17490654 | None:intergenic | 50.0% | |
| TAGCAACACCGTCGTTTGGT+TGG | + | chr8.4:17490288-17490307 | None:intergenic | 50.0% | |
| TCCTAGCACCAACCAAACGA+CGG | - | chr8.4:17490277-17490296 | MS.gene033015:intron | 50.0% | |
| TCTTGCAATGCCATCTGGTG+TGG | - | chr8.4:17490313-17490332 | MS.gene033015:intron | 50.0% | |
| TGCTTAGCAACACCGTCGTT+TGG | + | chr8.4:17490292-17490311 | None:intergenic | 50.0% | |
| TGGGTTACATTCCCTCCATC+GGG | + | chr8.4:17489988-17490007 | None:intergenic | 50.0% | |
| TTGCTTACTGCCACACCAGA+TGG | + | chr8.4:17490326-17490345 | None:intergenic | 50.0% | |
| ! | GTTAAGGTTAGTCCCGATGG+AGG | - | chr8.4:17489973-17489992 | MS.gene033015:CDS | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | - | chr8.4:17489477-17489496 | MS.gene033015:CDS | 50.0% |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr8.4:17489432-17489451 | None:intergenic | 55.0% | |
| ATGGCCTTCCACACGTTGCT+TGG | + | chr8.4:17489891-17489910 | None:intergenic | 55.0% | |
| CAGCTACCATCACCAGTGAC+AGG | - | chr8.4:17489417-17489436 | MS.gene033015:CDS | 55.0% | |
| CAGTCCAAGCAACGTGTGGA+AGG | - | chr8.4:17489884-17489903 | MS.gene033015:intron | 55.0% | |
| GCAACGTGTGGAAGGCCATT+AGG | - | chr8.4:17489892-17489911 | MS.gene033015:intron | 55.0% | |
| GCCGTACGCCTTGGAGATAT+TGG | + | chr8.4:17490533-17490552 | None:intergenic | 55.0% | |
| TCAGACACTCTGACTCCACG+AGG | + | chr8.4:17490560-17490579 | None:intergenic | 55.0% | |
| TCAGCAGTCCAAGCAACGTG+TGG | - | chr8.4:17489880-17489899 | MS.gene033015:intron | 55.0% | |
| TCAGGTCCTGTCACTGGTGA+TGG | + | chr8.4:17489426-17489445 | None:intergenic | 55.0% | |
| ! | ACCGTCGTTTGGTTGGTGCT+AGG | + | chr8.4:17490281-17490300 | None:intergenic | 55.0% |
| ! | TGGTACTGAACCAGCTAGCG+AGG | - | chr8.4:17490622-17490641 | MS.gene033015:CDS | 55.0% |
| AGGCGTACGGCTTTGCCTCG+TGG | - | chr8.4:17490542-17490561 | MS.gene033015:CDS | 65.0% | |
| CGAGGCAAAGCCGTACGCCT+TGG | + | chr8.4:17490542-17490561 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17489324 | 17490715 | 17489324 | ID=MS.gene033015 |
| chr8.4 | mRNA | 17489324 | 17490715 | 17489324 | ID=MS.gene033015.t1;Parent=MS.gene033015 |
| chr8.4 | exon | 17490474 | 17490715 | 17490474 | ID=MS.gene033015.t1.exon1;Parent=MS.gene033015.t1 |
| chr8.4 | CDS | 17490474 | 17490715 | 17490474 | ID=cds.MS.gene033015.t1;Parent=MS.gene033015.t1 |
| chr8.4 | exon | 17489921 | 17490193 | 17489921 | ID=MS.gene033015.t1.exon2;Parent=MS.gene033015.t1 |
| chr8.4 | CDS | 17489921 | 17490193 | 17489921 | ID=cds.MS.gene033015.t1;Parent=MS.gene033015.t1 |
| chr8.4 | exon | 17489324 | 17489819 | 17489324 | ID=MS.gene033015.t1.exon3;Parent=MS.gene033015.t1 |
| chr8.4 | CDS | 17489324 | 17489819 | 17489324 | ID=cds.MS.gene033015.t1;Parent=MS.gene033015.t1 |
| Gene Sequence |
| Protein sequence |
