Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044490.t1 | XP_003609164.2 | 80.6 | 335 | 62 | 2 | 1 | 333 | 1 | 334 | 2.10E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044490.t1 | Q4V3D9 | 40.4 | 322 | 162 | 5 | 38 | 333 | 55 | 372 | 6.9e-59 | 229.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044490.t1 | G7JT39 | 80.6 | 335 | 62 | 2 | 1 | 333 | 1 | 334 | 1.5e-147 | 531.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044490 | MS.gene044501 | PPI |
| MS.gene044490 | MS.gene78185 | PPI |
| MS.gene033026 | MS.gene044490 | PPI |
| MS.gene044490 | MS.gene023327 | PPI |
| MS.gene044490 | MS.gene34908 | PPI |
| MS.gene044490 | MS.gene038810 | PPI |
| MS.gene044490 | MS.gene83236 | PPI |
| MS.gene045793 | MS.gene044490 | PPI |
| MS.gene044490 | MS.gene044502 | PPI |
| MS.gene050115 | MS.gene044490 | PPI |
| MS.gene044490 | MS.gene038798 | PPI |
| MS.gene044490 | MS.gene68975 | PPI |
| MS.gene044490 | MS.gene033013 | PPI |
| MS.gene044490 | MS.gene063529 | PPI |
| MS.gene78183 | MS.gene044490 | PPI |
| MS.gene044490 | MS.gene68976 | PPI |
| MS.gene044490 | MS.gene025506 | PPI |
| MS.gene08297 | MS.gene044490 | PPI |
| MS.gene025506 | MS.gene044490 | PPI |
| MS.gene033015 | MS.gene044490 | PPI |
| MS.gene044490 | MS.gene35843 | PPI |
| MS.gene044490 | MS.gene033012 | PPI |
| MS.gene08295 | MS.gene044490 | PPI |
| MS.gene044490 | MS.gene68977 | PPI |
| MS.gene044490 | MS.gene045791 | PPI |
| MS.gene044500 | MS.gene044490 | PPI |
| MS.gene023328 | MS.gene044490 | PPI |
| MS.gene83238 | MS.gene044490 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044490.t1 | MTR_4g112670 | 80.597 | 335 | 62 | 2 | 1 | 333 | 1 | 334 | 0.0 | 545 |
| MS.gene044490.t1 | MTR_4g112650 | 73.731 | 335 | 85 | 2 | 2 | 334 | 1 | 334 | 0.0 | 511 |
| MS.gene044490.t1 | MTR_4g112630 | 71.810 | 337 | 81 | 3 | 2 | 335 | 1 | 326 | 1.08e-172 | 482 |
| MS.gene044490.t1 | MTR_4g112620 | 69.822 | 338 | 60 | 5 | 1 | 334 | 1 | 300 | 5.17e-163 | 457 |
| MS.gene044490.t1 | MTR_2g058450 | 52.922 | 308 | 143 | 2 | 27 | 333 | 28 | 334 | 2.33e-106 | 314 |
| MS.gene044490.t1 | MTR_0003s0530 | 77.901 | 181 | 38 | 1 | 147 | 325 | 1 | 181 | 8.98e-97 | 285 |
| MS.gene044490.t1 | MTR_7g490330 | 40.000 | 330 | 173 | 5 | 11 | 334 | 14 | 324 | 5.62e-72 | 226 |
| MS.gene044490.t1 | MTR_7g490350 | 38.006 | 321 | 169 | 4 | 39 | 334 | 53 | 368 | 2.21e-71 | 226 |
| MS.gene044490.t1 | MTR_2g058410 | 50.862 | 232 | 113 | 1 | 104 | 334 | 1 | 232 | 2.24e-68 | 214 |
| MS.gene044490.t1 | MTR_5g091980 | 37.901 | 343 | 182 | 5 | 2 | 334 | 1 | 322 | 2.42e-68 | 217 |
| MS.gene044490.t1 | MTR_7g090300 | 38.272 | 324 | 166 | 7 | 38 | 334 | 52 | 368 | 1.99e-66 | 213 |
| MS.gene044490.t1 | MTR_2g087780 | 36.765 | 340 | 177 | 8 | 26 | 333 | 60 | 393 | 5.93e-64 | 207 |
| MS.gene044490.t1 | MTR_7g090320 | 35.522 | 335 | 181 | 7 | 29 | 329 | 48 | 381 | 8.10e-64 | 207 |
| MS.gene044490.t1 | MTR_4g050190 | 36.778 | 329 | 171 | 7 | 37 | 334 | 68 | 390 | 6.10e-63 | 205 |
| MS.gene044490.t1 | MTR_2g099030 | 36.826 | 334 | 181 | 5 | 27 | 331 | 70 | 402 | 3.53e-62 | 203 |
| MS.gene044490.t1 | MTR_4g112840 | 93.069 | 101 | 7 | 0 | 174 | 274 | 56 | 156 | 8.42e-61 | 192 |
| MS.gene044490.t1 | MTR_7g090310 | 35.312 | 320 | 173 | 6 | 39 | 325 | 58 | 376 | 1.39e-59 | 196 |
| MS.gene044490.t1 | MTR_5g077620 | 73.864 | 88 | 20 | 3 | 4 | 91 | 1 | 85 | 4.16e-34 | 122 |
| MS.gene044490.t1 | MTR_5g077620 | 74.419 | 43 | 11 | 0 | 279 | 321 | 76 | 118 | 1.22e-12 | 65.1 |
| MS.gene044490.t1 | MTR_8g074170 | 34.783 | 230 | 125 | 5 | 39 | 268 | 78 | 282 | 6.21e-29 | 115 |
| MS.gene044490.t1 | MTR_8g074270 | 33.913 | 230 | 127 | 5 | 39 | 268 | 78 | 282 | 7.66e-28 | 112 |
| MS.gene044490.t1 | MTR_8g074210 | 32.906 | 234 | 128 | 7 | 37 | 268 | 76 | 282 | 8.91e-28 | 112 |
| MS.gene044490.t1 | MTR_2g042430 | 33.476 | 233 | 121 | 9 | 40 | 268 | 77 | 279 | 2.23e-23 | 99.8 |
| MS.gene044490.t1 | MTR_2g042370 | 33.476 | 233 | 122 | 9 | 40 | 268 | 65 | 268 | 8.42e-23 | 97.8 |
| MS.gene044490.t1 | MTR_2g042420 | 33.047 | 233 | 122 | 9 | 40 | 268 | 58 | 260 | 2.18e-22 | 96.7 |
| MS.gene044490.t1 | MTR_2g058430 | 45.378 | 119 | 44 | 2 | 77 | 183 | 43 | 152 | 1.87e-20 | 89.7 |
| MS.gene044490.t1 | MTR_1g075865 | 39.252 | 107 | 64 | 1 | 151 | 256 | 4 | 110 | 4.01e-17 | 77.0 |
| MS.gene044490.t1 | MTR_5g093640 | 45.918 | 98 | 7 | 2 | 238 | 335 | 52 | 103 | 2.11e-15 | 71.6 |
| MS.gene044490.t1 | MTR_8g074320 | 35.433 | 127 | 77 | 3 | 101 | 224 | 95 | 219 | 7.39e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044490.t1 | AT3G57030 | 40.373 | 322 | 162 | 5 | 38 | 333 | 55 | 372 | 3.67e-73 | 231 |
| MS.gene044490.t1 | AT1G74010 | 42.345 | 307 | 165 | 7 | 28 | 332 | 26 | 322 | 3.27e-71 | 224 |
| MS.gene044490.t1 | AT1G74020 | 41.424 | 309 | 168 | 7 | 28 | 333 | 27 | 325 | 1.47e-70 | 223 |
| MS.gene044490.t1 | AT1G74000 | 40.453 | 309 | 171 | 7 | 28 | 333 | 29 | 327 | 3.53e-69 | 219 |
| MS.gene044490.t1 | AT1G08470 | 37.920 | 327 | 169 | 6 | 37 | 334 | 67 | 388 | 1.54e-66 | 214 |
| MS.gene044490.t1 | AT5G22020 | 38.110 | 328 | 165 | 8 | 37 | 333 | 73 | 393 | 1.07e-64 | 210 |
| MS.gene044490.t1 | AT5G22020 | 38.110 | 328 | 165 | 8 | 37 | 333 | 73 | 393 | 1.07e-64 | 210 |
| MS.gene044490.t1 | AT5G22020 | 38.110 | 328 | 165 | 8 | 37 | 333 | 73 | 393 | 1.07e-64 | 210 |
| MS.gene044490.t1 | AT3G57010 | 37.818 | 275 | 152 | 5 | 8 | 270 | 11 | 278 | 9.72e-64 | 207 |
| MS.gene044490.t1 | AT2G41290 | 38.906 | 329 | 162 | 11 | 39 | 333 | 51 | 374 | 2.10e-62 | 203 |
| MS.gene044490.t1 | AT3G57020 | 40.816 | 245 | 135 | 4 | 33 | 274 | 47 | 284 | 3.23e-61 | 200 |
| MS.gene044490.t1 | AT3G59530 | 37.329 | 292 | 176 | 4 | 30 | 317 | 75 | 363 | 5.19e-58 | 192 |
| MS.gene044490.t1 | AT3G59530 | 37.329 | 292 | 176 | 4 | 30 | 317 | 75 | 363 | 5.19e-58 | 192 |
| MS.gene044490.t1 | AT3G59530 | 37.329 | 292 | 176 | 4 | 30 | 317 | 75 | 363 | 5.19e-58 | 192 |
| MS.gene044490.t1 | AT2G41300 | 32.919 | 322 | 177 | 4 | 34 | 326 | 73 | 384 | 1.29e-55 | 186 |
| MS.gene044490.t1 | AT3G57020 | 38.367 | 245 | 127 | 3 | 33 | 274 | 47 | 270 | 6.44e-55 | 183 |
| MS.gene044490.t1 | AT3G51420 | 26.316 | 304 | 181 | 9 | 17 | 311 | 40 | 309 | 5.49e-21 | 92.8 |
| MS.gene044490.t1 | AT3G51440 | 29.487 | 234 | 137 | 6 | 40 | 270 | 70 | 278 | 6.29e-20 | 89.7 |
| MS.gene044490.t1 | AT3G51430 | 27.306 | 271 | 163 | 8 | 40 | 309 | 70 | 307 | 3.22e-19 | 87.8 |
| MS.gene044490.t1 | AT3G51430 | 28.448 | 232 | 142 | 6 | 40 | 270 | 70 | 278 | 7.17e-19 | 87.0 |
| MS.gene044490.t1 | AT3G51450 | 28.511 | 235 | 138 | 7 | 40 | 270 | 70 | 278 | 1.04e-17 | 83.6 |
Find 79 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGAAGAAACCTTTATT+TGG | 0.157597 | 8.1:-15631802 | None:intergenic |
| GGAACTCAAGGGGCCAATTT+TGG | 0.185598 | 8.1:+15632852 | MS.gene044490:CDS |
| TATATAGCTGATGCTTATTA+TGG | 0.208516 | 8.1:+15632328 | MS.gene044490:CDS |
| GAGTTCCTCTTAATGTTATT+TGG | 0.230197 | 8.1:-15632836 | None:intergenic |
| ATTAGCAATCATGTTGAATA+TGG | 0.257587 | 8.1:+15631594 | None:intergenic |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.262161 | 8.1:-15632387 | None:intergenic |
| AAATATGTTGGCCCAAATAA+AGG | 0.281891 | 8.1:+15631790 | MS.gene044490:CDS |
| TACTGTGTTTGCTGATGGTT+TGG | 0.288431 | 8.1:+15632417 | MS.gene044490:CDS |
| AAATAAATGATTCCAGTGTT+TGG | 0.305353 | 8.1:-15632448 | None:intergenic |
| TATTCACTGAAATCCAAAAT+TGG | 0.308405 | 8.1:-15632865 | None:intergenic |
| TGCTTATTATGGACTACTTA+TGG | 0.309237 | 8.1:+15632339 | MS.gene044490:CDS |
| TTGGGTTGCTTTCCCTCCAT+TGG | 0.330957 | 8.1:-15632368 | None:intergenic |
| GAATTATTCATGCTGCTTGC+TGG | 0.332845 | 8.1:+15632809 | MS.gene044490:CDS |
| CCACACTTTCCGAACTTTGA+AGG | 0.347530 | 8.1:-15632759 | None:intergenic |
| CCAACATGTGGGAGGCCATT+AGG | 0.355169 | 8.1:+15632274 | MS.gene044490:CDS |
| AATAAATGATTCCAGTGTTT+GGG | 0.362007 | 8.1:-15632447 | None:intergenic |
| CCTTGAAGAAACCTTTATTT+GGG | 0.367638 | 8.1:-15631801 | None:intergenic |
| TGAAATATTAGTTACCTGTT+TGG | 0.368413 | 8.1:-15631841 | None:intergenic |
| GTATCTCTTCCTGCTGAGTA+TGG | 0.370089 | 8.1:+15632974 | MS.gene044490:CDS |
| AATTTCTATCCTTCAAAGTT+CGG | 0.390884 | 8.1:+15632750 | MS.gene044490:CDS |
| CCCAAATAAAGGTTTCTTCA+AGG | 0.401202 | 8.1:+15631801 | MS.gene044490:CDS |
| TGGGTTGCTTTCCCTCCATT+GGG | 0.406224 | 8.1:-15632367 | None:intergenic |
| AATTCTGATGAATTTGCTCT+TGG | 0.423029 | 8.1:-15632791 | None:intergenic |
| GAAGACCAAATAACATTAAG+AGG | 0.431967 | 8.1:+15632831 | MS.gene044490:CDS |
| GAGTACAATGGAACACTCTA+TGG | 0.432828 | 8.1:+15633022 | MS.gene044490:CDS |
| AGCAATCTTGCAGTGCCAAC+TGG | 0.441501 | 8.1:+15632686 | MS.gene044490:CDS |
| TCAGTCACTCTGACTCCTAT+AGG | 0.446798 | 8.1:-15632929 | None:intergenic |
| TGCTTAGCAACACTGTTGTT+TGG | 0.449793 | 8.1:-15632667 | None:intergenic |
| TTCGTACGTCTTGGAGATCC+TGG | 0.460847 | 8.1:-15632902 | None:intergenic |
| CTACTTATGGTTGGTCCCAA+TGG | 0.466876 | 8.1:+15632352 | MS.gene044490:CDS |
| TGCTAGGATCATATCTCAAT+AGG | 0.467290 | 8.1:-15632640 | None:intergenic |
| TTGTGCAGGTCCAACTAATT+GGG | 0.468485 | 8.1:-15632386 | None:intergenic |
| ATGCTTACACTTCTCCAAAC+AGG | 0.470208 | 8.1:+15631827 | MS.gene044490:CDS |
| GTAGACAGTGGAGATCATTC+AGG | 0.470599 | 8.1:+15632614 | MS.gene044490:CDS |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 8.1:+15631757 | MS.gene044490:CDS |
| AATTCTACTGTGTTTGCTGA+TGG | 0.478552 | 8.1:+15632412 | MS.gene044490:CDS |
| TATTATGGACTACTTATGGT+TGG | 0.479374 | 8.1:+15632343 | MS.gene044490:CDS |
| AGACGTACGAATTTGCCTAT+AGG | 0.484988 | 8.1:+15632914 | MS.gene044490:CDS |
| TGATTGAAACTCAATCCTAA+TGG | 0.492488 | 8.1:-15632289 | None:intergenic |
| CAAACTATGCTTACTTGAGC+TGG | 0.495674 | 8.1:-15632492 | None:intergenic |
| TCAGGTCCTGTCACTGGTGG+TGG | 0.498527 | 8.1:-15631703 | None:intergenic |
| GGGAAAGCAACCCAATTAGT+TGG | 0.500291 | 8.1:+15632376 | MS.gene044490:CDS |
| TAGCAACACTGTTGTTTGGT+TGG | 0.501427 | 8.1:-15632663 | None:intergenic |
| TGCTAGCATAAGAAGCAAGC+AGG | 0.502038 | 8.1:-15633051 | None:intergenic |
| AGTAATATAGCTACTGATGA+TGG | 0.504220 | 8.1:-15631664 | None:intergenic |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.505698 | 8.1:-15631709 | None:intergenic |
| ACTGTTGTTTGGTTGGTGCT+AGG | 0.506451 | 8.1:-15632656 | None:intergenic |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 8.1:-15631757 | None:intergenic |
| ATAGGCAAATTCGTACGTCT+TGG | 0.509028 | 8.1:-15632911 | None:intergenic |
| ATGGCCTCCCACATGTTGGT+TGG | 0.525902 | 8.1:-15632270 | None:intergenic |
| TTATCGAATGCAAGTGACTC+AGG | 0.528312 | 8.1:-15631721 | None:intergenic |
| ACAGTAGAATTGACTTGTGC+AGG | 0.530441 | 8.1:-15632400 | None:intergenic |
| ATAACATTAAGAGGAACTCA+AGG | 0.531400 | 8.1:+15632840 | MS.gene044490:CDS |
| TTTGAAAATTCTTCCATCAG+AGG | 0.540669 | 8.1:-15631770 | None:intergenic |
| GTTCGGAAAGTGTGGCTGAA+AGG | 0.546561 | 8.1:+15632767 | MS.gene044490:CDS |
| CAGCTACCACCACCAGTGAC+AGG | 0.551193 | 8.1:+15631697 | MS.gene044490:CDS |
| CTACTGACTGCCACACCAGT+TGG | 0.554129 | 8.1:-15632701 | None:intergenic |
| GACTCAGGTCCTGTCACTGG+TGG | 0.566671 | 8.1:-15631706 | None:intergenic |
| CTTATGGTTGGTCCCAATGG+AGG | 0.566947 | 8.1:+15632355 | MS.gene044490:CDS |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 8.1:+15631745 | MS.gene044490:CDS |
| CCTTCAAAGTTCGGAAAGTG+TGG | 0.581970 | 8.1:+15632759 | MS.gene044490:CDS |
| TCAGCACTCCAACCAACATG+TGG | 0.583888 | 8.1:+15632262 | MS.gene044490:CDS |
| CCTAATGGCCTCCCACATGT+TGG | 0.588145 | 8.1:-15632274 | None:intergenic |
| GGTGTGGCAGTCAGTAGAGA+TGG | 0.589991 | 8.1:+15632707 | MS.gene044490:CDS |
| TTATGGTTGGTCCCAATGGA+GGG | 0.592491 | 8.1:+15632356 | MS.gene044490:CDS |
| GCTAGCATAAGAAGCAAGCA+GGG | 0.596924 | 8.1:-15633050 | None:intergenic |
| AGTTGAGTACCATACTCAGC+AGG | 0.600382 | 8.1:-15632983 | None:intergenic |
| TAACATTAAGAGGAACTCAA+GGG | 0.618426 | 8.1:+15632841 | MS.gene044490:CDS |
| TTGGATATAGACCCAAACAC+TGG | 0.627976 | 8.1:+15632436 | MS.gene044490:CDS |
| TTTCTCAAACTGGTAGACAG+TGG | 0.638164 | 8.1:+15632602 | MS.gene044490:CDS |
| AGGAACAAGACAGTCTGTGA+TGG | 0.642304 | 8.1:+15632226 | MS.gene044490:intron |
| AATCATGTTGAATATGGCAA+TGG | 0.644300 | 8.1:+15631600 | None:intergenic |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.650500 | 8.1:+15633010 | MS.gene044490:CDS |
| AACATTAAGAGGAACTCAAG+GGG | 0.655990 | 8.1:+15632842 | MS.gene044490:CDS |
| CACTCCAACCAACATGTGGG+AGG | 0.658905 | 8.1:+15632266 | MS.gene044490:CDS |
| TCTTGCAGTGCCAACTGGTG+TGG | 0.670889 | 8.1:+15632691 | MS.gene044490:CDS |
| TGGTACTCAACTAAGTAGTG+AGG | 0.675669 | 8.1:+15632994 | MS.gene044490:CDS |
| TACAATGGAACACTCTATGG+TGG | 0.677070 | 8.1:+15633025 | MS.gene044490:CDS |
| CAGCACTCCAACCAACATGT+GGG | 0.683867 | 8.1:+15632263 | MS.gene044490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAGTAAAAAGAAAA+GGG | - | chr8.1:15632045-15632064 | None:intergenic | 10.0% |
| !! | TATAAAAAAGTAAAAAGAAA+AGG | - | chr8.1:15632046-15632065 | None:intergenic | 10.0% |
| !!! | TAATACATTTTTTTTTTGAA+AGG | - | chr8.1:15631885-15631904 | None:intergenic | 10.0% |
| !!! | AATTACTTCTATTTTTTATC+AGG | + | chr8.1:15632206-15632225 | MS.gene044490:intron | 15.0% |
| !!! | TAGTACTTTTACAAAATAAA+TGG | - | chr8.1:15631976-15631995 | None:intergenic | 15.0% |
| !!! | ATTTCAGTGAATAGTTTTTT+AGG | + | chr8.1:15632875-15632894 | MS.gene044490:CDS | 20.0% |
| ! | AAATAAATGATTCCAGTGTT+TGG | - | chr8.1:15632451-15632470 | None:intergenic | 25.0% |
| ! | AATAAATGATTCCAGTGTTT+GGG | - | chr8.1:15632450-15632469 | None:intergenic | 25.0% |
| ! | AATTTCTATCCTTCAAAGTT+CGG | + | chr8.1:15632750-15632769 | MS.gene044490:CDS | 25.0% |
| ! | ATGAAAGTAAAAGCAGAAAA+TGG | + | chr8.1:15632175-15632194 | MS.gene044490:intron | 25.0% |
| ! | GATTCACACAAAAAATAAGA+AGG | - | chr8.1:15632134-15632153 | None:intergenic | 25.0% |
| ! | TATATAGCTGATGCTTATTA+TGG | + | chr8.1:15632328-15632347 | MS.gene044490:CDS | 25.0% |
| ! | TATTCACTGAAATCCAAAAT+TGG | - | chr8.1:15632868-15632887 | None:intergenic | 25.0% |
| ! | TGAAATATTAGTTACCTGTT+TGG | - | chr8.1:15631844-15631863 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTCAAATATGT+TGG | + | chr8.1:15631778-15631797 | MS.gene044490:CDS | 25.0% |
| !!! | ACATCACTTGATTTTTTGTA+GGG | + | chr8.1:15632577-15632596 | MS.gene044490:intron | 25.0% |
| !!! | TTTTTTTTTGAAAGGAGAAC+TGG | - | chr8.1:15631877-15631896 | None:intergenic | 25.0% |
| AAATATGTTGGCCCAAATAA+AGG | + | chr8.1:15631790-15631809 | MS.gene044490:CDS | 30.0% | |
| AAATGGTCACTTAACTCATT+AGG | - | chr8.1:15631959-15631978 | None:intergenic | 30.0% | |
| ACGAACTATATAGAAAACAC+TGG | + | chr8.1:15632097-15632116 | MS.gene044490:intron | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | - | chr8.1:15631667-15631686 | None:intergenic | 30.0% | |
| ATAACATTAAGAGGAACTCA+AGG | + | chr8.1:15632840-15632859 | MS.gene044490:CDS | 30.0% | |
| GAAGACCAAATAACATTAAG+AGG | + | chr8.1:15632831-15632850 | MS.gene044490:CDS | 30.0% | |
| GAGTTCCTCTTAATGTTATT+TGG | - | chr8.1:15632839-15632858 | None:intergenic | 30.0% | |
| TAACATTAAGAGGAACTCAA+GGG | + | chr8.1:15632841-15632860 | MS.gene044490:CDS | 30.0% | |
| TCACTTGCATTCGATAAAAA+CGG | + | chr8.1:15631727-15631746 | MS.gene044490:CDS | 30.0% | |
| TCCTTGAAGAAACCTTTATT+TGG | - | chr8.1:15631805-15631824 | None:intergenic | 30.0% | |
| TGATTGAAACTCAATCCTAA+TGG | - | chr8.1:15632292-15632311 | None:intergenic | 30.0% | |
| TTGTTACTGTAATGCTGAAT+TGG | - | chr8.1:15632551-15632570 | None:intergenic | 30.0% | |
| TTTGAAAATTCTTCCATCAG+AGG | - | chr8.1:15631773-15631792 | None:intergenic | 30.0% | |
| ! | AATTCTGATGAATTTGCTCT+TGG | - | chr8.1:15632794-15632813 | None:intergenic | 30.0% |
| ! | CCTTGAAGAAACCTTTATTT+GGG | - | chr8.1:15631804-15631823 | None:intergenic | 30.0% |
| ! | TATTATGGACTACTTATGGT+TGG | + | chr8.1:15632343-15632362 | MS.gene044490:CDS | 30.0% |
| ! | TGCTTATTATGGACTACTTA+TGG | + | chr8.1:15632339-15632358 | MS.gene044490:CDS | 30.0% |
| ! | TGTTTTCTATATAGTTCGTG+AGG | - | chr8.1:15632096-15632115 | None:intergenic | 30.0% |
| !! | TCTTAGCTTTAGTGGTAAAA+AGG | - | chr8.1:15632073-15632092 | None:intergenic | 30.0% |
| !!! | CACATCACTTGATTTTTTGT+AGG | + | chr8.1:15632576-15632595 | MS.gene044490:intron | 30.0% |
| !!! | CAGTGAATAGTTTTTTAGGA+CGG | + | chr8.1:15632879-15632898 | MS.gene044490:CDS | 30.0% |
| AAAGGAGAACTGGCTAATAT+TGG | - | chr8.1:15631867-15631886 | None:intergenic | 35.0% | |
| AACATTAAGAGGAACTCAAG+GGG | + | chr8.1:15632842-15632861 | MS.gene044490:CDS | 35.0% | |
| CCCAAATAAAGGTTTCTTCA+AGG | + | chr8.1:15631801-15631820 | MS.gene044490:CDS | 35.0% | |
| GTAATGCTGAATTGGCATTT+AGG | - | chr8.1:15632543-15632562 | None:intergenic | 35.0% | |
| TGCTAGGATCATATCTCAAT+AGG | - | chr8.1:15632643-15632662 | None:intergenic | 35.0% | |
| ! | AATTCTACTGTGTTTGCTGA+TGG | + | chr8.1:15632412-15632431 | MS.gene044490:CDS | 35.0% |
| ! | TTGTAGGGATTTTCTCAAAC+TGG | + | chr8.1:15632592-15632611 | MS.gene044490:intron | 35.0% |
| AGACGTACGAATTTGCCTAT+AGG | + | chr8.1:15632914-15632933 | MS.gene044490:CDS | 40.0% | |
| ATAGGCAAATTCGTACGTCT+TGG | - | chr8.1:15632914-15632933 | None:intergenic | 40.0% | |
| ATGCTTACACTTCTCCAAAC+AGG | + | chr8.1:15631827-15631846 | MS.gene044490:CDS | 40.0% | |
| CAAACTATGCTTACTTGAGC+TGG | - | chr8.1:15632495-15632514 | None:intergenic | 40.0% | |
| GAGTACAATGGAACACTCTA+TGG | + | chr8.1:15633022-15633041 | MS.gene044490:CDS | 40.0% | |
| GCATTCGATAAAAACGGTGA+AGG | + | chr8.1:15631733-15631752 | MS.gene044490:CDS | 40.0% | |
| TACAATGGAACACTCTATGG+TGG | + | chr8.1:15633025-15633044 | MS.gene044490:CDS | 40.0% | |
| TGCTTAGCAACACTGTTGTT+TGG | - | chr8.1:15632670-15632689 | None:intergenic | 40.0% | |
| TGGTACTCAACTAAGTAGTG+AGG | + | chr8.1:15632994-15633013 | MS.gene044490:CDS | 40.0% | |
| TTATCGAATGCAAGTGACTC+AGG | - | chr8.1:15631724-15631743 | None:intergenic | 40.0% | |
| TTGGATATAGACCCAAACAC+TGG | + | chr8.1:15632436-15632455 | MS.gene044490:CDS | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | - | chr8.1:15632389-15632408 | None:intergenic | 40.0% | |
| TTTCTCAAACTGGTAGACAG+TGG | + | chr8.1:15632602-15632621 | MS.gene044490:CDS | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | + | chr8.1:15633010-15633029 | MS.gene044490:CDS | 40.0% |
| ! | GAATTATTCATGCTGCTTGC+TGG | + | chr8.1:15632809-15632828 | MS.gene044490:CDS | 40.0% |
| ! | TACTGTGTTTGCTGATGGTT+TGG | + | chr8.1:15632417-15632436 | MS.gene044490:CDS | 40.0% |
| ! | TAGCAACACTGTTGTTTGGT+TGG | - | chr8.1:15632666-15632685 | None:intergenic | 40.0% |
| !! | ACAGTAGAATTGACTTGTGC+AGG | - | chr8.1:15632403-15632422 | None:intergenic | 40.0% |
| !!! | AATAGTTTTTTAGGACGGCC+AGG | + | chr8.1:15632884-15632903 | MS.gene044490:CDS | 40.0% |
| AACGGTGAAGGACCTTATGT+TGG | + | chr8.1:15631745-15631764 | MS.gene044490:CDS | 45.0% | |
| AGGAACAAGACAGTCTGTGA+TGG | + | chr8.1:15632226-15632245 | MS.gene044490:intron | 45.0% | |
| AGTTGAGTACCATACTCAGC+AGG | - | chr8.1:15632986-15633005 | None:intergenic | 45.0% | |
| CCACACTTTCCGAACTTTGA+AGG | - | chr8.1:15632762-15632781 | None:intergenic | 45.0% | |
| CCTTCAAAGTTCGGAAAGTG+TGG | + | chr8.1:15632759-15632778 | MS.gene044490:CDS | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | - | chr8.1:15632390-15632409 | None:intergenic | 45.0% | |
| GCTAGCATAAGAAGCAAGCA+GGG | - | chr8.1:15633053-15633072 | None:intergenic | 45.0% | |
| GGGAAAGCAACCCAATTAGT+TGG | + | chr8.1:15632376-15632395 | MS.gene044490:CDS | 45.0% | |
| GTAGACAGTGGAGATCATTC+AGG | + | chr8.1:15632614-15632633 | MS.gene044490:CDS | 45.0% | |
| GTATCTCTTCCTGCTGAGTA+TGG | + | chr8.1:15632974-15632993 | MS.gene044490:CDS | 45.0% | |
| TCAGTCACTCTGACTCCTAT+AGG | - | chr8.1:15632932-15632951 | None:intergenic | 45.0% | |
| TGCTAGCATAAGAAGCAAGC+AGG | - | chr8.1:15633054-15633073 | None:intergenic | 45.0% | |
| ! | ACTGTTGTTTGGTTGGTGCT+AGG | - | chr8.1:15632659-15632678 | None:intergenic | 45.0% |
| ! | CTACTTATGGTTGGTCCCAA+TGG | + | chr8.1:15632352-15632371 | MS.gene044490:CDS | 45.0% |
| ! | TTATGGTTGGTCCCAATGGA+GGG | + | chr8.1:15632356-15632375 | MS.gene044490:CDS | 45.0% |
| !! | TCGTGAGGTCTTAGCTTTAG+TGG | - | chr8.1:15632081-15632100 | None:intergenic | 45.0% |
| AGCAATCTTGCAGTGCCAAC+TGG | + | chr8.1:15632686-15632705 | MS.gene044490:CDS | 50.0% | |
| CAGCACTCCAACCAACATGT+GGG | + | chr8.1:15632263-15632282 | MS.gene044490:CDS | 50.0% | |
| CCATCAGAGGAGCCAACATA+AGG | - | chr8.1:15631760-15631779 | None:intergenic | 50.0% | |
| TCAGCACTCCAACCAACATG+TGG | + | chr8.1:15632262-15632281 | MS.gene044490:CDS | 50.0% | |
| TTCGTACGTCTTGGAGATCC+TGG | - | chr8.1:15632905-15632924 | None:intergenic | 50.0% | |
| ! | CTTATGGTTGGTCCCAATGG+AGG | + | chr8.1:15632355-15632374 | MS.gene044490:CDS | 50.0% |
| ! | GGAACTCAAGGGGCCAATTT+TGG | + | chr8.1:15632852-15632871 | MS.gene044490:CDS | 50.0% |
| ! | GTTCGGAAAGTGTGGCTGAA+AGG | + | chr8.1:15632767-15632786 | MS.gene044490:CDS | 50.0% |
| ! | TGGGTTGCTTTCCCTCCATT+GGG | - | chr8.1:15632370-15632389 | None:intergenic | 50.0% |
| ! | TTGGGTTGCTTTCCCTCCAT+TGG | - | chr8.1:15632371-15632390 | None:intergenic | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | + | chr8.1:15631757-15631776 | MS.gene044490:CDS | 50.0% |
| AGTGACTCAGGTCCTGTCAC+TGG | - | chr8.1:15631712-15631731 | None:intergenic | 55.0% | |
| ATGGCCTCCCACATGTTGGT+TGG | - | chr8.1:15632273-15632292 | None:intergenic | 55.0% | |
| CACTCCAACCAACATGTGGG+AGG | + | chr8.1:15632266-15632285 | MS.gene044490:CDS | 55.0% | |
| CCAACATGTGGGAGGCCATT+AGG | + | chr8.1:15632274-15632293 | MS.gene044490:CDS | 55.0% | |
| CCTAATGGCCTCCCACATGT+TGG | - | chr8.1:15632277-15632296 | None:intergenic | 55.0% | |
| GGTGTGGCAGTCAGTAGAGA+TGG | + | chr8.1:15632707-15632726 | MS.gene044490:CDS | 55.0% | |
| TCTTGCAGTGCCAACTGGTG+TGG | + | chr8.1:15632691-15632710 | MS.gene044490:CDS | 55.0% | |
| ! | CTACTGACTGCCACACCAGT+TGG | - | chr8.1:15632704-15632723 | None:intergenic | 55.0% |
| CAGCTACCACCACCAGTGAC+AGG | + | chr8.1:15631697-15631716 | MS.gene044490:CDS | 60.0% | |
| GACTCAGGTCCTGTCACTGG+TGG | - | chr8.1:15631709-15631728 | None:intergenic | 60.0% | |
| TCAGGTCCTGTCACTGGTGG+TGG | - | chr8.1:15631706-15631725 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15631604 | 15633087 | 15631604 | ID=MS.gene044490 |
| chr8.1 | mRNA | 15631604 | 15633087 | 15631604 | ID=MS.gene044490.t1;Parent=MS.gene044490 |
| chr8.1 | exon | 15631604 | 15631848 | 15631604 | ID=MS.gene044490.t1.exon1;Parent=MS.gene044490.t1 |
| chr8.1 | CDS | 15631604 | 15631848 | 15631604 | ID=cds.MS.gene044490.t1;Parent=MS.gene044490.t1 |
| chr8.1 | exon | 15632228 | 15632500 | 15632228 | ID=MS.gene044490.t1.exon2;Parent=MS.gene044490.t1 |
| chr8.1 | CDS | 15632228 | 15632500 | 15632228 | ID=cds.MS.gene044490.t1;Parent=MS.gene044490.t1 |
| chr8.1 | exon | 15632598 | 15633087 | 15632598 | ID=MS.gene044490.t1.exon3;Parent=MS.gene044490.t1 |
| chr8.1 | CDS | 15632598 | 15633087 | 15632598 | ID=cds.MS.gene044490.t1;Parent=MS.gene044490.t1 |
| Gene Sequence |
| Protein sequence |
