Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044500.t1 | XP_003609164.2 | 96.1 | 336 | 13 | 0 | 1 | 336 | 1 | 336 | 3.50E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044500.t1 | Q4V3D9 | 40.5 | 321 | 164 | 4 | 38 | 334 | 55 | 372 | 8.7e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044500.t1 | G7JT39 | 96.1 | 336 | 13 | 0 | 1 | 336 | 1 | 336 | 2.5e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044500 | MS.gene68976 | PPI |
| MS.gene044500 | MS.gene025506 | PPI |
| MS.gene044500 | MS.gene050115 | PPI |
| MS.gene023328 | MS.gene044500 | PPI |
| MS.gene044500 | MS.gene35843 | PPI |
| MS.gene044500 | MS.gene033012 | PPI |
| MS.gene050115 | MS.gene044500 | PPI |
| MS.gene044500 | MS.gene68977 | PPI |
| MS.gene044500 | MS.gene045791 | PPI |
| MS.gene044500 | MS.gene033026 | PPI |
| MS.gene044500 | MS.gene044501 | PPI |
| MS.gene044500 | MS.gene78185 | PPI |
| MS.gene044500 | MS.gene08297 | PPI |
| MS.gene044500 | MS.gene033015 | PPI |
| MS.gene044500 | MS.gene023327 | PPI |
| MS.gene044500 | MS.gene34908 | PPI |
| MS.gene044500 | MS.gene045793 | PPI |
| MS.gene044500 | MS.gene038810 | PPI |
| MS.gene044500 | MS.gene83236 | PPI |
| MS.gene044500 | MS.gene044502 | PPI |
| MS.gene044500 | MS.gene78183 | PPI |
| MS.gene044500 | MS.gene023328 | PPI |
| MS.gene08295 | MS.gene044500 | PPI |
| MS.gene044500 | MS.gene038798 | PPI |
| MS.gene044500 | MS.gene68975 | PPI |
| MS.gene83238 | MS.gene044500 | PPI |
| MS.gene044500 | MS.gene033013 | PPI |
| MS.gene044500 | MS.gene063529 | PPI |
| MS.gene044500 | MS.gene044490 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044500.t1 | MTR_4g112670 | 96.131 | 336 | 13 | 0 | 1 | 336 | 1 | 336 | 0.0 | 659 |
| MS.gene044500.t1 | MTR_4g112650 | 78.209 | 335 | 69 | 2 | 2 | 334 | 1 | 333 | 0.0 | 529 |
| MS.gene044500.t1 | MTR_4g112630 | 72.321 | 336 | 78 | 2 | 2 | 334 | 1 | 324 | 8.44e-173 | 483 |
| MS.gene044500.t1 | MTR_4g112620 | 69.486 | 331 | 62 | 3 | 4 | 334 | 8 | 299 | 9.51e-160 | 449 |
| MS.gene044500.t1 | MTR_0003s0530 | 94.475 | 181 | 10 | 0 | 146 | 326 | 1 | 181 | 3.02e-123 | 352 |
| MS.gene044500.t1 | MTR_2g058450 | 55.663 | 309 | 134 | 2 | 27 | 334 | 28 | 334 | 4.83e-113 | 332 |
| MS.gene044500.t1 | MTR_7g490330 | 40.909 | 330 | 169 | 4 | 11 | 334 | 14 | 323 | 5.31e-79 | 244 |
| MS.gene044500.t1 | MTR_7g490350 | 39.130 | 322 | 163 | 3 | 39 | 334 | 53 | 367 | 1.54e-77 | 242 |
| MS.gene044500.t1 | MTR_5g091980 | 38.776 | 343 | 178 | 4 | 2 | 334 | 1 | 321 | 4.47e-74 | 231 |
| MS.gene044500.t1 | MTR_2g058410 | 54.741 | 232 | 102 | 2 | 103 | 333 | 1 | 230 | 4.35e-73 | 226 |
| MS.gene044500.t1 | MTR_7g090300 | 40.373 | 322 | 161 | 6 | 38 | 334 | 52 | 367 | 1.14e-72 | 229 |
| MS.gene044500.t1 | MTR_4g050190 | 37.612 | 335 | 175 | 7 | 29 | 334 | 60 | 389 | 9.64e-71 | 225 |
| MS.gene044500.t1 | MTR_2g087780 | 37.574 | 338 | 178 | 7 | 26 | 334 | 60 | 393 | 1.63e-70 | 225 |
| MS.gene044500.t1 | MTR_7g090320 | 38.323 | 334 | 174 | 7 | 29 | 330 | 48 | 381 | 1.27e-69 | 222 |
| MS.gene044500.t1 | MTR_7g090310 | 38.245 | 319 | 166 | 5 | 39 | 326 | 58 | 376 | 4.61e-66 | 213 |
| MS.gene044500.t1 | MTR_2g099030 | 33.832 | 334 | 192 | 4 | 27 | 332 | 70 | 402 | 4.86e-62 | 203 |
| MS.gene044500.t1 | MTR_4g112840 | 77.000 | 100 | 23 | 0 | 173 | 272 | 56 | 155 | 2.27e-49 | 163 |
| MS.gene044500.t1 | MTR_5g077620 | 73.563 | 87 | 21 | 2 | 4 | 90 | 1 | 85 | 1.80e-34 | 123 |
| MS.gene044500.t1 | MTR_5g077620 | 67.442 | 43 | 14 | 0 | 280 | 322 | 76 | 118 | 1.04e-12 | 65.1 |
| MS.gene044500.t1 | MTR_8g074170 | 31.907 | 257 | 151 | 5 | 39 | 295 | 78 | 310 | 2.36e-32 | 124 |
| MS.gene044500.t1 | MTR_8g074270 | 31.818 | 264 | 152 | 6 | 39 | 302 | 78 | 313 | 1.43e-30 | 119 |
| MS.gene044500.t1 | MTR_8g074210 | 33.191 | 235 | 133 | 5 | 37 | 271 | 76 | 286 | 3.22e-29 | 115 |
| MS.gene044500.t1 | MTR_2g042420 | 29.675 | 246 | 149 | 9 | 110 | 334 | 105 | 347 | 4.14e-25 | 104 |
| MS.gene044500.t1 | MTR_2g042430 | 36.478 | 159 | 97 | 3 | 110 | 267 | 124 | 279 | 8.04e-25 | 103 |
| MS.gene044500.t1 | MTR_2g042370 | 32.275 | 189 | 118 | 4 | 110 | 297 | 112 | 291 | 1.26e-24 | 102 |
| MS.gene044500.t1 | MTR_2g058430 | 50.495 | 101 | 41 | 1 | 76 | 176 | 43 | 134 | 5.77e-22 | 94.0 |
| MS.gene044500.t1 | MTR_8g074320 | 38.583 | 127 | 73 | 3 | 100 | 223 | 95 | 219 | 2.91e-19 | 85.5 |
| MS.gene044500.t1 | MTR_1g075865 | 38.095 | 105 | 64 | 1 | 151 | 255 | 7 | 110 | 1.25e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044500.t1 | AT3G57030 | 40.498 | 321 | 164 | 4 | 38 | 334 | 55 | 372 | 2.13e-78 | 244 |
| MS.gene044500.t1 | AT1G08470 | 38.739 | 333 | 173 | 6 | 29 | 334 | 59 | 387 | 6.19e-75 | 236 |
| MS.gene044500.t1 | AT1G74020 | 42.395 | 309 | 164 | 6 | 28 | 333 | 27 | 324 | 8.95e-74 | 231 |
| MS.gene044500.t1 | AT1G74010 | 41.748 | 309 | 165 | 7 | 28 | 333 | 26 | 322 | 1.11e-71 | 226 |
| MS.gene044500.t1 | AT1G74000 | 40.777 | 309 | 169 | 6 | 28 | 333 | 29 | 326 | 7.39e-70 | 221 |
| MS.gene044500.t1 | AT3G57010 | 41.803 | 244 | 136 | 2 | 26 | 269 | 41 | 278 | 1.81e-69 | 221 |
| MS.gene044500.t1 | AT5G22020 | 36.826 | 334 | 178 | 8 | 29 | 334 | 65 | 393 | 3.94e-69 | 221 |
| MS.gene044500.t1 | AT5G22020 | 36.826 | 334 | 178 | 8 | 29 | 334 | 65 | 393 | 3.94e-69 | 221 |
| MS.gene044500.t1 | AT5G22020 | 36.826 | 334 | 178 | 8 | 29 | 334 | 65 | 393 | 3.94e-69 | 221 |
| MS.gene044500.t1 | AT3G57020 | 41.772 | 237 | 132 | 1 | 33 | 269 | 47 | 277 | 1.91e-67 | 216 |
| MS.gene044500.t1 | AT2G41290 | 35.809 | 377 | 196 | 11 | 1 | 334 | 1 | 374 | 7.67e-64 | 207 |
| MS.gene044500.t1 | AT3G57020 | 39.241 | 237 | 124 | 1 | 33 | 269 | 47 | 263 | 1.37e-61 | 201 |
| MS.gene044500.t1 | AT2G41300 | 34.314 | 306 | 171 | 3 | 46 | 327 | 85 | 384 | 1.67e-60 | 199 |
| MS.gene044500.t1 | AT3G59530 | 39.095 | 243 | 142 | 3 | 30 | 267 | 75 | 316 | 1.14e-57 | 192 |
| MS.gene044500.t1 | AT3G59530 | 39.095 | 243 | 142 | 3 | 30 | 267 | 75 | 316 | 1.14e-57 | 192 |
| MS.gene044500.t1 | AT3G59530 | 39.095 | 243 | 142 | 3 | 30 | 267 | 75 | 316 | 1.14e-57 | 192 |
| MS.gene044500.t1 | AT3G51420 | 27.566 | 341 | 199 | 12 | 17 | 332 | 40 | 357 | 3.28e-27 | 110 |
| MS.gene044500.t1 | AT3G51440 | 28.990 | 307 | 166 | 10 | 17 | 310 | 40 | 307 | 1.71e-26 | 108 |
| MS.gene044500.t1 | AT3G51430 | 28.431 | 306 | 182 | 10 | 40 | 330 | 70 | 353 | 4.59e-25 | 104 |
| MS.gene044500.t1 | AT3G51430 | 28.571 | 308 | 181 | 10 | 40 | 330 | 70 | 355 | 4.86e-25 | 104 |
| MS.gene044500.t1 | AT3G51450 | 28.674 | 279 | 148 | 9 | 40 | 309 | 70 | 306 | 5.64e-24 | 101 |
Find 81 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATGTAGCTGATGCTTATT+TGG | 0.184950 | 8.1:-15517644 | MS.gene044500:CDS |
| GGAATTCAGGAGGCCAATTT+TGG | 0.191849 | 8.1:-15517115 | MS.gene044500:CDS |
| GAATTCCTCTTGATGTTATT+TGG | 0.192006 | 8.1:+15517131 | None:intergenic |
| AAATATTTAGTTACCTGTTT+GGG | 0.255785 | 8.1:+15518031 | None:intergenic |
| CTTGTGCAGGTCCAACTAAT+TGG | 0.272786 | 8.1:+15517584 | None:intergenic |
| TATGCACTGAAATCCAAAAT+TGG | 0.298675 | 8.1:+15517102 | None:intergenic |
| TATGTAGCTGATGCTTATTT+GGG | 0.310175 | 8.1:-15517643 | MS.gene044500:CDS |
| ATTGGCAATCATGATGAATA+TGG | 0.315816 | 8.1:-15518274 | None:intergenic |
| GCATCTCTTGCTGCTGAGTA+TGG | 0.315822 | 8.1:-15516987 | MS.gene044500:CDS |
| AATAACATCAAGAGGAATTC+AGG | 0.320309 | 8.1:-15517128 | MS.gene044500:CDS |
| GAACTATTCATGCTACTTAC+TGG | 0.331823 | 8.1:-15517158 | MS.gene044500:CDS |
| CAAACAGAATTCAAAGAGTA+TGG | 0.337397 | 8.1:-15517208 | MS.gene044500:CDS |
| TGCTTATTTGGGGCTTGTTA+AGG | 0.363818 | 8.1:-15517632 | MS.gene044500:CDS |
| GAAATATTTAGTTACCTGTT+TGG | 0.366521 | 8.1:+15518030 | None:intergenic |
| CTCCACTAGTTAGCAGTGTT+TGG | 0.373816 | 8.1:+15517363 | None:intergenic |
| GCCGTACGCCTTGGAGATAT+TGG | 0.402807 | 8.1:+15517059 | None:intergenic |
| GCTAACTAGTGGAGATAGTT+CGG | 0.406368 | 8.1:-15517354 | MS.gene044500:CDS |
| GCAACATGTGGAAGGCCATT+AGG | 0.408625 | 8.1:-15517697 | MS.gene044500:CDS |
| TTGTGCAGGTCCAACTAATT+GGG | 0.417683 | 8.1:+15517585 | None:intergenic |
| AAAACAATGCTTACTTGAGT+TGG | 0.418022 | 8.1:+15517479 | None:intergenic |
| ATGGCCTTCCACATGTTGCT+TGG | 0.423208 | 8.1:+15517701 | None:intergenic |
| TGCTTAGCAACACCGTCGTT+TGG | 0.427505 | 8.1:+15517300 | None:intergenic |
| TGTGGAAGGCCATTAGGATT+GGG | 0.448985 | 8.1:-15517691 | MS.gene044500:CDS |
| TTGGGTTTCAATCATCAAAC+AGG | 0.453284 | 8.1:-15517673 | MS.gene044500:CDS |
| CTAACTAGTGGAGATAGTTC+GGG | 0.455356 | 8.1:-15517353 | MS.gene044500:CDS |
| AGCAATCTTGCAATGCCATC+TGG | 0.458768 | 8.1:-15517281 | MS.gene044500:CDS |
| AAATATAATGGTCCAGATGT+AGG | 0.459994 | 8.1:-15518078 | MS.gene044500:CDS |
| ATGTGGAAGGCCATTAGGAT+TGG | 0.461713 | 8.1:-15517692 | MS.gene044500:CDS |
| TACTCTTGAACCTCACTAGC+TGG | 0.468245 | 8.1:+15516957 | None:intergenic |
| ATGCTTACACTTCCCCAAAC+AGG | 0.470526 | 8.1:-15518044 | MS.gene044500:intron |
| AGTTCTGACGAATTTGCTCT+TGG | 0.471190 | 8.1:+15517176 | None:intergenic |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 8.1:-15518111 | MS.gene044500:CDS |
| TGGTCCAGATGTAGGTTTCA+AGG | 0.477646 | 8.1:-15518070 | MS.gene044500:CDS |
| TGCTAGCATAAGAAGCGAGC+AGG | 0.478207 | 8.1:+15516910 | None:intergenic |
| AAATAAACGATTCCAGTGTC+AGG | 0.481590 | 8.1:+15517523 | None:intergenic |
| TATTCCTTGAAACCTACATC+TGG | 0.482961 | 8.1:+15518066 | None:intergenic |
| TGGGTTACATTCCCTCCATC+GGG | 0.492632 | 8.1:+15517604 | None:intergenic |
| CGAGGCAAAGCCGTACGCCT+TGG | 0.499175 | 8.1:+15517050 | None:intergenic |
| AGTAATATAGCTACTGATGA+TGG | 0.504220 | 8.1:+15518204 | None:intergenic |
| TGATTGAAACCCAATCCTAA+TGG | 0.505270 | 8.1:+15517682 | None:intergenic |
| ACCAATATCTCCAAGGCGTA+CGG | 0.508075 | 8.1:-15517060 | MS.gene044500:CDS |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 8.1:+15518111 | None:intergenic |
| ACCGTCGTTTGGTTGGTGCT+AGG | 0.509218 | 8.1:+15517311 | None:intergenic |
| TACAATGGAAAACTCTATGC+TGG | 0.510601 | 8.1:-15516936 | MS.gene044500:CDS |
| TTGGGTTACATTCCCTCCAT+CGG | 0.513844 | 8.1:+15517603 | None:intergenic |
| TTATCAAATGCAAGTGACTC+AGG | 0.517239 | 8.1:+15518147 | None:intergenic |
| GGGAATGTAACCCAATTAGT+TGG | 0.517432 | 8.1:-15517595 | MS.gene044500:CDS |
| CTTGTTAAGGTTAGTCCCGA+TGG | 0.524295 | 8.1:-15517619 | MS.gene044500:CDS |
| TAGCAACACCGTCGTTTGGT+TGG | 0.526062 | 8.1:+15517304 | None:intergenic |
| TCAGGTCCTGTCACTGGTGA+TGG | 0.530888 | 8.1:+15518165 | None:intergenic |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.531219 | 8.1:+15518159 | None:intergenic |
| ATAGTAGAATTGCCTTGTGC+AGG | 0.536515 | 8.1:+15517571 | None:intergenic |
| AATTCTACTATGTTTGCTGA+TGG | 0.537613 | 8.1:-15517559 | MS.gene044500:CDS |
| TTTGAAAATTCTTCCATCAG+AGG | 0.540669 | 8.1:+15518098 | None:intergenic |
| ATTCAAAGAGTATGGCTGAC+AGG | 0.543963 | 8.1:-15517200 | MS.gene044500:CDS |
| GGTGTGGCAGTAAGCAAAGA+TGG | 0.552392 | 8.1:-15517260 | MS.gene044500:CDS |
| TTGCTTACTGCCACACCAGA+TGG | 0.555964 | 8.1:+15517266 | None:intergenic |
| AGGCGTACGGCTTTGCCTCG+TGG | 0.561801 | 8.1:-15517047 | MS.gene044500:CDS |
| GCTAGCATAAGAAGCGAGCA+GGG | 0.568395 | 8.1:+15516911 | None:intergenic |
| CAGCTACCATCACCAGTGAC+AGG | 0.576598 | 8.1:-15518171 | MS.gene044500:CDS |
| AACGGTGAAGGACCTTATGT+TGG | 0.580918 | 8.1:-15518123 | MS.gene044500:CDS |
| GAAGACCAAATAACATCAAG+AGG | 0.582125 | 8.1:-15517136 | MS.gene044500:CDS |
| TTGGAAGTTAGTGCTAGCTA+TGG | 0.588516 | 8.1:+15517498 | None:intergenic |
| CAGTCCAAGCAACATGTGGA+AGG | 0.599866 | 8.1:-15517705 | MS.gene044500:CDS |
| TACCAAACACTGCTAACTAG+TGG | 0.600039 | 8.1:-15517365 | MS.gene044500:CDS |
| CAATTAGTTGGACCTGCACA+AGG | 0.606283 | 8.1:-15517583 | MS.gene044500:CDS |
| GTTAAGGTTAGTCCCGATGG+AGG | 0.606836 | 8.1:-15517616 | MS.gene044500:CDS |
| ATGTAGCTGATGCTTATTTG+GGG | 0.608065 | 8.1:-15517642 | MS.gene044500:CDS |
| TGGTACTGAACCAGCTAGTG+AGG | 0.609133 | 8.1:-15516967 | MS.gene044500:CDS |
| AGGAACAAGACAGTCTGTGA+TGG | 0.611137 | 8.1:-15517745 | MS.gene044500:CDS |
| AATATTTAGTTACCTGTTTG+GGG | 0.612782 | 8.1:+15518032 | None:intergenic |
| TCTTGCAATGCCATCTGGTG+TGG | 0.621845 | 8.1:-15517276 | MS.gene044500:CDS |
| TTAAGGTTAGTCCCGATGGA+GGG | 0.624076 | 8.1:-15517615 | MS.gene044500:CDS |
| TCAGCAGTCCAAGCAACATG+TGG | 0.630269 | 8.1:-15517709 | MS.gene044500:CDS |
| TTAGATGTAGATCCTGACAC+TGG | 0.631098 | 8.1:-15517535 | MS.gene044500:CDS |
| AATCATGATGAATATGGCAA+TGG | 0.636030 | 8.1:-15518268 | None:intergenic |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.643469 | 8.1:-15516951 | MS.gene044500:CDS |
| TAGGACTACCAATATCTCCA+AGG | 0.662210 | 8.1:-15517067 | MS.gene044500:CDS |
| AACATCAAGAGGAATTCAGG+AGG | 0.674601 | 8.1:-15517125 | MS.gene044500:CDS |
| TCCTAGCACCAACCAAACGA+CGG | 0.704747 | 8.1:-15517312 | MS.gene044500:CDS |
| TCAGACACTCTGACTCCACG+AGG | 0.756470 | 8.1:+15517032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTACTAAAAAAAAAAAAAAA+AGG | + | chr8.1:15517274-15517293 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTATTTTGGATC+AGG | - | chr8.1:15517395-15517414 | MS.gene044500:intron | 15.0% |
| !!! | ACTTTACTTTATTTTTTGTA+GGG | - | chr8.1:15517770-15517789 | MS.gene044500:intron | 15.0% |
| !!! | TAGTACTTTTTCAAAATAAA+TGG | + | chr8.1:15517205-15517224 | None:intergenic | 15.0% |
| !! | AAATATTTAGTTACCTGTTT+GGG | + | chr8.1:15517132-15517151 | None:intergenic | 20.0% |
| !!! | CACTTTACTTTATTTTTTGT+AGG | - | chr8.1:15517769-15517788 | MS.gene044500:intron | 20.0% |
| !!! | GGAAGAATTTTCAAATATAA+TGG | - | chr8.1:15517070-15517089 | MS.gene044500:CDS | 20.0% |
| ! | AATATTTAGTTACCTGTTTG+GGG | + | chr8.1:15517131-15517150 | None:intergenic | 25.0% |
| ! | GAAATATTTAGTTACCTGTT+TGG | + | chr8.1:15517133-15517152 | None:intergenic | 25.0% |
| ! | TCACTTGCATTTGATAAAAA+CGG | - | chr8.1:15517019-15517038 | MS.gene044500:CDS | 25.0% |
| ! | TTGTTATAGTAATGCAGAAT+TGG | + | chr8.1:15517744-15517763 | None:intergenic | 25.0% |
| !! | TCTTATGCTAGCATTTTTAT+CGG | - | chr8.1:15518260-15518279 | MS.gene044500:CDS | 25.0% |
| AAAACAATGCTTACTTGAGT+TGG | + | chr8.1:15517684-15517703 | None:intergenic | 30.0% | |
| AAATATAATGGTCCAGATGT+AGG | - | chr8.1:15517082-15517101 | MS.gene044500:CDS | 30.0% | |
| AAATGGTCACTTAACTCATT+AGG | + | chr8.1:15517188-15517207 | None:intergenic | 30.0% | |
| AATAACATCAAGAGGAATTC+AGG | - | chr8.1:15518032-15518051 | MS.gene044500:intron | 30.0% | |
| AGTAATATAGCTACTGATGA+TGG | + | chr8.1:15516959-15516978 | None:intergenic | 30.0% | |
| ATATAAACACAAAGTTCGTG+AGG | + | chr8.1:15517325-15517344 | None:intergenic | 30.0% | |
| CAAACAGAATTCAAAGAGTA+TGG | - | chr8.1:15517952-15517971 | MS.gene044500:intron | 30.0% | |
| GAATCTAGCTAGATAATAGT+TGG | + | chr8.1:15517161-15517180 | None:intergenic | 30.0% | |
| GAATTCCTCTTGATGTTATT+TGG | + | chr8.1:15518032-15518051 | None:intergenic | 30.0% | |
| TATGCACTGAAATCCAAAAT+TGG | + | chr8.1:15518061-15518080 | None:intergenic | 30.0% | |
| TATGTAGCTGATGCTTATTT+GGG | - | chr8.1:15517517-15517536 | MS.gene044500:CDS | 30.0% | |
| TTTGAAAATTCTTCCATCAG+AGG | + | chr8.1:15517065-15517084 | None:intergenic | 30.0% | |
| ! | AATTCTACTATGTTTGCTGA+TGG | - | chr8.1:15517601-15517620 | MS.gene044500:CDS | 30.0% |
| ! | ATTTCAGTGCATAGTGTTTT+AGG | - | chr8.1:15518068-15518087 | MS.gene044500:CDS | 30.0% |
| AAATAAACGATTCCAGTGTC+AGG | + | chr8.1:15517640-15517659 | None:intergenic | 35.0% | |
| ATGTAGCTGATGCTTATTTG+GGG | - | chr8.1:15517518-15517537 | MS.gene044500:CDS | 35.0% | |
| GAAGACCAAATAACATCAAG+AGG | - | chr8.1:15518024-15518043 | MS.gene044500:intron | 35.0% | |
| GCATTTGATAAAAACGGTGA+AGG | - | chr8.1:15517025-15517044 | MS.gene044500:CDS | 35.0% | |
| GTATGTAGCTGATGCTTATT+TGG | - | chr8.1:15517516-15517535 | MS.gene044500:CDS | 35.0% | |
| TACAATGGAAAACTCTATGC+TGG | - | chr8.1:15518224-15518243 | MS.gene044500:CDS | 35.0% | |
| TATTCCTTGAAACCTACATC+TGG | + | chr8.1:15517097-15517116 | None:intergenic | 35.0% | |
| TGATTGAAACCCAATCCTAA+TGG | + | chr8.1:15517481-15517500 | None:intergenic | 35.0% | |
| TTATCAAATGCAAGTGACTC+AGG | + | chr8.1:15517016-15517035 | None:intergenic | 35.0% | |
| TTGGGTTTCAATCATCAAAC+AGG | - | chr8.1:15517487-15517506 | MS.gene044500:intron | 35.0% | |
| ! | GAACTATTCATGCTACTTAC+TGG | - | chr8.1:15518002-15518021 | MS.gene044500:intron | 35.0% |
| !!! | GTGCATAGTGTTTTAGGATT+AGG | - | chr8.1:15518074-15518093 | MS.gene044500:CDS | 35.0% |
| AACATCAAGAGGAATTCAGG+AGG | - | chr8.1:15518035-15518054 | MS.gene044500:intron | 40.0% | |
| ATAGTAGAATTGCCTTGTGC+AGG | + | chr8.1:15517592-15517611 | None:intergenic | 40.0% | |
| CTAACTAGTGGAGATAGTTC+GGG | - | chr8.1:15517807-15517826 | MS.gene044500:intron | 40.0% | |
| GCTAACTAGTGGAGATAGTT+CGG | - | chr8.1:15517806-15517825 | MS.gene044500:intron | 40.0% | |
| GGGAATGTAACCCAATTAGT+TGG | - | chr8.1:15517565-15517584 | MS.gene044500:CDS | 40.0% | |
| TACCAAACACTGCTAACTAG+TGG | - | chr8.1:15517795-15517814 | MS.gene044500:intron | 40.0% | |
| TAGGACTACCAATATCTCCA+AGG | - | chr8.1:15518093-15518112 | MS.gene044500:CDS | 40.0% | |
| TTAGATGTAGATCCTGACAC+TGG | - | chr8.1:15517625-15517644 | MS.gene044500:CDS | 40.0% | |
| TTGGAAGTTAGTGCTAGCTA+TGG | + | chr8.1:15517665-15517684 | None:intergenic | 40.0% | |
| TTGTGCAGGTCCAACTAATT+GGG | + | chr8.1:15517578-15517597 | None:intergenic | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr8.1:15518209-15518228 | MS.gene044500:CDS | 40.0% |
| ! | AGTTCTGACGAATTTGCTCT+TGG | + | chr8.1:15517987-15518006 | None:intergenic | 40.0% |
| ! | ATTCAAAGAGTATGGCTGAC+AGG | - | chr8.1:15517960-15517979 | MS.gene044500:intron | 40.0% |
| !! | TGCTTATTTGGGGCTTGTTA+AGG | - | chr8.1:15517528-15517547 | MS.gene044500:CDS | 40.0% |
| AACGGTGAAGGACCTTATGT+TGG | - | chr8.1:15517037-15517056 | MS.gene044500:CDS | 45.0% | |
| ACCAATATCTCCAAGGCGTA+CGG | - | chr8.1:15518100-15518119 | MS.gene044500:CDS | 45.0% | |
| AGCAATCTTGCAATGCCATC+TGG | - | chr8.1:15517879-15517898 | MS.gene044500:intron | 45.0% | |
| AGGAACAAGACAGTCTGTGA+TGG | - | chr8.1:15517415-15517434 | MS.gene044500:intron | 45.0% | |
| ATGCTTACACTTCCCCAAAC+AGG | - | chr8.1:15517116-15517135 | MS.gene044500:CDS | 45.0% | |
| ATGTGGAAGGCCATTAGGAT+TGG | - | chr8.1:15517468-15517487 | MS.gene044500:intron | 45.0% | |
| CAATTAGTTGGACCTGCACA+AGG | - | chr8.1:15517577-15517596 | MS.gene044500:CDS | 45.0% | |
| CTCCACTAGTTAGCAGTGTT+TGG | + | chr8.1:15517800-15517819 | None:intergenic | 45.0% | |
| CTTGTGCAGGTCCAACTAAT+TGG | + | chr8.1:15517579-15517598 | None:intergenic | 45.0% | |
| TACTCTTGAACCTCACTAGC+TGG | + | chr8.1:15518206-15518225 | None:intergenic | 45.0% | |
| TGGTCCAGATGTAGGTTTCA+AGG | - | chr8.1:15517090-15517109 | MS.gene044500:CDS | 45.0% | |
| TGTGGAAGGCCATTAGGATT+GGG | - | chr8.1:15517469-15517488 | MS.gene044500:intron | 45.0% | |
| TTGGGTTACATTCCCTCCAT+CGG | + | chr8.1:15517560-15517579 | None:intergenic | 45.0% | |
| ! | CTTGTTAAGGTTAGTCCCGA+TGG | - | chr8.1:15517541-15517560 | MS.gene044500:CDS | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | - | chr8.1:15518045-15518064 | MS.gene044500:CDS | 45.0% |
| ! | TTAAGGTTAGTCCCGATGGA+GGG | - | chr8.1:15517545-15517564 | MS.gene044500:CDS | 45.0% |
| !!! | AGAAATAATTTTTTTTATTT+TGG | - | chr8.1:15517389-15517408 | MS.gene044500:intron | 5.0% |
| ATGGCCTTCCACATGTTGCT+TGG | + | chr8.1:15517462-15517481 | None:intergenic | 50.0% | |
| CAGTCCAAGCAACATGTGGA+AGG | - | chr8.1:15517455-15517474 | MS.gene044500:intron | 50.0% | |
| CCATCAGAGGAGCCAACATA+AGG | + | chr8.1:15517052-15517071 | None:intergenic | 50.0% | |
| GCAACATGTGGAAGGCCATT+AGG | - | chr8.1:15517463-15517482 | MS.gene044500:intron | 50.0% | |
| GCATCTCTTGCTGCTGAGTA+TGG | - | chr8.1:15518173-15518192 | MS.gene044500:CDS | 50.0% | |
| GCTAGCATAAGAAGCGAGCA+GGG | + | chr8.1:15518252-15518271 | None:intergenic | 50.0% | |
| GGTGTGGCAGTAAGCAAAGA+TGG | - | chr8.1:15517900-15517919 | MS.gene044500:intron | 50.0% | |
| TAGCAACACCGTCGTTTGGT+TGG | + | chr8.1:15517859-15517878 | None:intergenic | 50.0% | |
| TCAGCAGTCCAAGCAACATG+TGG | - | chr8.1:15517451-15517470 | MS.gene044500:intron | 50.0% | |
| TCCTAGCACCAACCAAACGA+CGG | - | chr8.1:15517848-15517867 | MS.gene044500:intron | 50.0% | |
| TCTTGCAATGCCATCTGGTG+TGG | - | chr8.1:15517884-15517903 | MS.gene044500:intron | 50.0% | |
| TGCTAGCATAAGAAGCGAGC+AGG | + | chr8.1:15518253-15518272 | None:intergenic | 50.0% | |
| TGCTTAGCAACACCGTCGTT+TGG | + | chr8.1:15517863-15517882 | None:intergenic | 50.0% | |
| TGGGTTACATTCCCTCCATC+GGG | + | chr8.1:15517559-15517578 | None:intergenic | 50.0% | |
| TTGCTTACTGCCACACCAGA+TGG | + | chr8.1:15517897-15517916 | None:intergenic | 50.0% | |
| ! | GTTAAGGTTAGTCCCGATGG+AGG | - | chr8.1:15517544-15517563 | MS.gene044500:CDS | 50.0% |
| ! | TGGTACTGAACCAGCTAGTG+AGG | - | chr8.1:15518193-15518212 | MS.gene044500:CDS | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | - | chr8.1:15517049-15517068 | MS.gene044500:CDS | 50.0% |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr8.1:15517004-15517023 | None:intergenic | 55.0% | |
| CAGCTACCATCACCAGTGAC+AGG | - | chr8.1:15516989-15517008 | MS.gene044500:CDS | 55.0% | |
| GCCGTACGCCTTGGAGATAT+TGG | + | chr8.1:15518104-15518123 | None:intergenic | 55.0% | |
| TCAGACACTCTGACTCCACG+AGG | + | chr8.1:15518131-15518150 | None:intergenic | 55.0% | |
| TCAGGTCCTGTCACTGGTGA+TGG | + | chr8.1:15516998-15517017 | None:intergenic | 55.0% | |
| ! | ACCGTCGTTTGGTTGGTGCT+AGG | + | chr8.1:15517852-15517871 | None:intergenic | 55.0% |
| AGGCGTACGGCTTTGCCTCG+TGG | - | chr8.1:15518113-15518132 | MS.gene044500:CDS | 65.0% | |
| CGAGGCAAAGCCGTACGCCT+TGG | + | chr8.1:15518113-15518132 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15516896 | 15518286 | 15516896 | ID=MS.gene044500 |
| chr8.1 | mRNA | 15516896 | 15518286 | 15516896 | ID=MS.gene044500.t1;Parent=MS.gene044500 |
| chr8.1 | exon | 15518045 | 15518286 | 15518045 | ID=MS.gene044500.t1.exon1;Parent=MS.gene044500.t1 |
| chr8.1 | CDS | 15518045 | 15518286 | 15518045 | ID=cds.MS.gene044500.t1;Parent=MS.gene044500.t1 |
| chr8.1 | exon | 15517493 | 15517765 | 15517493 | ID=MS.gene044500.t1.exon2;Parent=MS.gene044500.t1 |
| chr8.1 | CDS | 15517493 | 15517765 | 15517493 | ID=cds.MS.gene044500.t1;Parent=MS.gene044500.t1 |
| chr8.1 | exon | 15516896 | 15517391 | 15516896 | ID=MS.gene044500.t1.exon3;Parent=MS.gene044500.t1 |
| chr8.1 | CDS | 15516896 | 15517391 | 15516896 | ID=cds.MS.gene044500.t1;Parent=MS.gene044500.t1 |
| Gene Sequence |
| Protein sequence |
