AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045791

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045791.t1 MTR_2g058450 95.833 336 14 0 1 336 1 336 0.0 610
MS.gene045791.t1 MTR_2g058410 78.448 232 48 2 104 334 1 231 1.48e-116 337
MS.gene045791.t1 MTR_4g112670 53.012 332 151 3 5 334 6 334 5.20e-116 339
MS.gene045791.t1 MTR_4g112650 52.096 334 155 3 1 332 1 331 6.34e-113 331
MS.gene045791.t1 MTR_4g112630 51.039 337 149 4 1 334 1 324 9.25e-107 315
MS.gene045791.t1 MTR_4g112620 45.783 332 141 4 3 334 7 299 4.10e-91 274
MS.gene045791.t1 MTR_7g490330 43.322 307 154 6 31 336 38 325 1.56e-73 230
MS.gene045791.t1 MTR_7g490350 41.615 322 158 6 40 336 53 369 6.62e-72 228
MS.gene045791.t1 MTR_7g090300 41.667 336 162 8 26 336 43 369 8.77e-70 222
MS.gene045791.t1 MTR_5g091980 42.997 307 154 4 30 336 38 323 2.22e-68 217
MS.gene045791.t1 MTR_7g090320 37.500 320 167 4 40 326 58 377 1.08e-67 218
MS.gene045791.t1 MTR_7g090310 36.991 319 169 4 40 326 58 376 8.21e-67 215
MS.gene045791.t1 MTR_4g050190 38.182 330 167 9 38 336 68 391 3.28e-64 208
MS.gene045791.t1 MTR_2g087780 36.765 340 179 8 28 336 61 395 5.48e-63 205
MS.gene045791.t1 MTR_0003s0530 52.486 181 84 1 149 327 2 182 1.77e-58 187
MS.gene045791.t1 MTR_2g099030 35.015 337 187 6 28 334 70 404 6.04e-56 187
MS.gene045791.t1 MTR_2g058430 80.000 85 16 1 93 177 50 133 3.90e-38 137
MS.gene045791.t1 MTR_8g074210 32.340 235 134 4 40 274 78 287 1.62e-32 124
MS.gene045791.t1 MTR_8g074270 31.179 263 153 5 38 300 76 310 7.43e-31 120
MS.gene045791.t1 MTR_4g112840 53.125 96 45 0 175 270 56 151 1.55e-30 114
MS.gene045791.t1 MTR_8g074170 32.068 237 136 4 38 274 76 287 1.96e-29 116
MS.gene045791.t1 MTR_2g042430 31.855 248 140 7 113 336 126 368 1.06e-22 97.8
MS.gene045791.t1 MTR_2g042370 33.333 159 100 5 113 269 114 268 5.99e-19 87.0
MS.gene045791.t1 MTR_8g074320 36.923 130 78 3 98 225 92 219 9.92e-18 81.3
MS.gene045791.t1 MTR_2g042420 32.075 159 101 5 113 269 107 260 1.64e-17 82.8
MS.gene045791.t1 MTR_1g075865 37.838 111 68 1 149 258 1 111 1.90e-17 78.2
MS.gene045791.t1 MTR_5g077620 46.512 86 43 1 6 91 3 85 1.32e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045791.t1 AT1G74000 41.424 309 172 5 29 336 29 329 2.52e-77 240
MS.gene045791.t1 AT1G74020 42.122 311 167 6 29 336 27 327 7.47e-77 239
MS.gene045791.t1 AT1G74010 41.801 311 167 7 29 336 26 325 3.47e-72 227
MS.gene045791.t1 AT3G57030 40.952 315 154 6 39 326 55 364 7.80e-69 220
MS.gene045791.t1 AT5G22020 39.755 327 165 8 38 336 73 395 1.30e-67 217
MS.gene045791.t1 AT5G22020 39.755 327 165 8 38 336 73 395 1.30e-67 217
MS.gene045791.t1 AT5G22020 39.755 327 165 8 38 336 73 395 1.30e-67 217
MS.gene045791.t1 AT2G41290 37.168 339 176 9 31 336 42 376 4.65e-60 197
MS.gene045791.t1 AT3G57010 41.564 243 135 2 28 270 42 277 2.29e-59 195
MS.gene045791.t1 AT3G57020 38.113 265 151 4 12 270 19 276 1.50e-57 191
MS.gene045791.t1 AT1G08470 35.976 328 176 9 38 336 67 389 2.02e-57 191
MS.gene045791.t1 AT2G41300 36.634 303 159 5 50 326 88 383 3.68e-53 180
MS.gene045791.t1 AT3G59530 34.395 314 185 8 40 334 84 395 1.90e-51 176
MS.gene045791.t1 AT3G59530 34.395 314 185 8 40 334 84 395 1.90e-51 176
MS.gene045791.t1 AT3G59530 34.395 314 185 8 40 334 84 395 1.90e-51 176
MS.gene045791.t1 AT3G57020 35.472 265 144 3 12 270 19 262 8.51e-51 172
MS.gene045791.t1 AT3G51430 31.646 237 130 9 38 269 67 276 5.66e-25 103
MS.gene045791.t1 AT3G51430 31.624 234 134 9 38 269 67 276 6.29e-25 103
MS.gene045791.t1 AT3G51440 30.342 234 137 9 38 269 67 276 5.59e-24 101
MS.gene045791.t1 AT3G51420 30.380 237 133 9 38 269 67 276 1.72e-23 100
MS.gene045791.t1 AT3G51450 28.017 232 139 7 41 269 70 276 1.65e-22 97.4

Find 89 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAGCTGATGCTTATTA+TGG 0.133630 2.1:+35894280 MS.gene045791:CDS
TCCTTAGCATTTAACTCTAT+TGG 0.228333 2.1:+35893355 MS.gene045791:CDS
GGAACTCGATGAACGAGTTT+TGG 0.245358 2.1:+35895213 MS.gene045791:CDS
AATCTAGAAGGAACCCCTTT+TGG 0.256939 2.1:+35894355 MS.gene045791:CDS
GAGTTAAATGCTAAGGATTC+AGG 0.260581 2.1:-35893349 None:intergenic
TAGATGATGAATAGAGTATC+AGG 0.288393 2.1:-35893270 None:intergenic
TGTCCTTGTTAGCGAGTATA+AGG 0.301123 2.1:+35895097 MS.gene045791:CDS
AGATATATTCTTGCGCCTTC+CGG 0.302117 2.1:+35895169 MS.gene045791:CDS
GCAATCTGACTGAGGCATTT+GGG 0.305916 2.1:+35895048 MS.gene045791:CDS
TAGGCCTCCCGCAAGTTTCT+TGG 0.333871 2.1:-35894222 None:intergenic
TACAATGTGCAATGGCATTT+CGG 0.334133 2.1:+35894186 MS.gene045791:CDS
TTGTTGGATCATATCTGAAT+AGG 0.341302 2.1:-35895001 None:intergenic
CGAACAGAATCAGGAGATTC+TGG 0.345102 2.1:+35895120 MS.gene045791:CDS
GATATATTCTTGCGCCTTCC+GGG 0.345369 2.1:+35895170 MS.gene045791:CDS
AGTATAAGGCGAACAGAATC+AGG 0.347818 2.1:+35895111 MS.gene045791:CDS
AGCAATCTGACTGAGGCATT+TGG 0.349017 2.1:+35895047 MS.gene045791:CDS
ATCAGGAGATTCTGGTTAAC+AGG 0.350749 2.1:+35895128 MS.gene045791:CDS
AGCAACATAGTTGTTATCAT+TGG 0.362083 2.1:+35893235 MS.gene045791:CDS
ATATAGCTGATGCTTATTAT+GGG 0.363334 2.1:+35894281 MS.gene045791:CDS
GAGTTCCTTCTGATGTTATC+TGG 0.369443 2.1:-35895197 None:intergenic
CTGATGTTATCTGGTCTTCC+CGG 0.381953 2.1:-35895188 None:intergenic
CAGAACTCCAAGAAACTTGC+GGG 0.394579 2.1:+35894215 MS.gene045791:CDS
TACCTTCCATCACCACTAAC+AGG 0.397110 2.1:+35893325 MS.gene045791:CDS
GCAACATAGTTGTTATCATT+GGG 0.407324 2.1:+35893236 MS.gene045791:CDS
AATGTAGTTTCGTTCGTTGT+TGG 0.412520 2.1:-35895017 None:intergenic
AGAAACTTGCGGGAGGCCTA+TGG 0.419919 2.1:+35894225 MS.gene045791:CDS
AAATAAACGATTCCACTGTT+AGG 0.427072 2.1:-35894403 None:intergenic
CTTAGTCCTAGAGGCAATAC+AGG 0.430139 2.1:-35895281 None:intergenic
ATATCTGAAGTGTATGCATT+AGG 0.436663 2.1:-35895152 None:intergenic
CCAGCTCACGCTACAAGATC+AGG 0.449971 2.1:+35894434 MS.gene045791:CDS
CCTGATCTTGTAGCGTGAGC+TGG 0.454658 2.1:-35894434 None:intergenic
AAGGATTCAGGGCCTGTTAG+TGG 0.458899 2.1:-35893337 None:intergenic
CTTGTAGCGTGAGCTGGCTT+CGG 0.464503 2.1:-35894428 None:intergenic
TCAGGGCCTGTTAGTGGTGA+TGG 0.471569 2.1:-35893331 None:intergenic
ACCAATAGAGTTAAATGCTA+AGG 0.475636 2.1:-35893356 None:intergenic
TGAGGTGTTTAGTACTGAAT+CGG 0.475790 2.1:+35895346 MS.gene045791:CDS
GAAACTTGCGGGAGGCCTAT+GGG 0.478537 2.1:+35894226 MS.gene045791:CDS
GTTGCAGCACCGCCGTCATA+AGG 0.498751 2.1:-35894316 None:intergenic
AGTTAAATGCTAAGGATTCA+GGG 0.502876 2.1:-35893348 None:intergenic
CATATAGACTCATACCTGTC+TGG 0.503195 2.1:-35893466 None:intergenic
CCTTACACTGGTGTTTCTGA+TGG 0.506509 2.1:+35893385 MS.gene045791:CDS
AGAGGCAATACAGGAGGTAC+TGG 0.506539 2.1:-35895272 None:intergenic
TTGAGTTTCGACTACAACAC+AGG 0.517330 2.1:+35894250 MS.gene045791:CDS
CACCAGCAAGAAACCCAAAA+GGG 0.518447 2.1:-35894369 None:intergenic
CCATCAGAAACACCAGTGTA+AGG 0.518869 2.1:-35893385 None:intergenic
ACACCAGCAAGAAACCCAAA+AGG 0.523810 2.1:-35894370 None:intergenic
TTGCACACATTTCACCAGAC+AGG 0.531724 2.1:+35893452 MS.gene045791:CDS
CTTGTTGCTAATAATCTAGA+AGG 0.533749 2.1:+35894343 MS.gene045791:CDS
CTTGTGAAGGTTCCTTATGA+CGG 0.540587 2.1:+35894304 MS.gene045791:CDS
GCATTTAACTCTATTGGTGA+AGG 0.540843 2.1:+35893361 MS.gene045791:CDS
GGGATCTCCAGAAACTACTA+AGG 0.541268 2.1:+35894958 MS.gene045791:intron
ACTAAGGAGAAAAGATCATA+CGG 0.542640 2.1:+35894974 MS.gene045791:CDS
TGCTTATTATGGGCTTGTGA+AGG 0.543243 2.1:+35894291 MS.gene045791:CDS
TGTTATCTGGTCTTCCCGGA+AGG 0.561550 2.1:-35895184 None:intergenic
GTACCTCCTGTATTGCCTCT+AGG 0.564887 2.1:+35895275 MS.gene045791:CDS
TCAGAACTCCAAGAAACTTG+CGG 0.567059 2.1:+35894214 MS.gene045791:CDS
CAGTGAAGTTCAAGAATCTG+AGG 0.573764 2.1:+35895370 MS.gene045791:CDS
CAATCTGACTGAGGCATTTG+GGG 0.576323 2.1:+35895049 MS.gene045791:CDS
GTCTGTCAAGTAATTTGCAG+TGG 0.579546 2.1:-35893300 None:intergenic
GTACTAAACACCTCAACAAG+AGG 0.587609 2.1:-35895338 None:intergenic
TAGTCGAAACTCAACCCCAT+AGG 0.590652 2.1:-35894241 None:intergenic
AGAGTCTGTGCCTCTTGTTG+AGG 0.593006 2.1:+35895328 MS.gene045791:CDS
AATACAGGAGGTACTGGTGG+TGG 0.595158 2.1:-35895266 None:intergenic
GGGGTAGCAGTTAGCAACGA+TGG 0.596387 2.1:+35895068 MS.gene045791:CDS
GGCCTGTTAGTGGTGATGGA+AGG 0.605461 2.1:-35893327 None:intergenic
AGATGATGAATAGAGTATCA+GGG 0.607970 2.1:-35893269 None:intergenic
AAACTTGCGGGAGGCCTATG+GGG 0.608767 2.1:+35894227 MS.gene045791:CDS
GTGAAATGTGTGCAAACTCA+AGG 0.621379 2.1:-35893444 None:intergenic
TCGCCTTATACTCGCTAACA+AGG 0.622539 2.1:-35895100 None:intergenic
AGGAGGTACTGGTGGTGGTG+AGG 0.624836 2.1:-35895261 None:intergenic
TCTGTCAAGTAATTTGCAGT+GGG 0.626025 2.1:-35893299 None:intergenic
GGACTAAGAGTCAATGCGGA+AGG 0.626124 2.1:+35895296 MS.gene045791:CDS
CTAAGGAGAAAAGATCATAC+GGG 0.632537 2.1:+35894975 MS.gene045791:CDS
GAAGACCAGATAACATCAGA+AGG 0.636308 2.1:+35895192 MS.gene045791:CDS
TGAGTTTCGACTACAACACA+GGG 0.637847 2.1:+35894251 MS.gene045791:CDS
GCATTGACTCTTAGTCCTAG+AGG 0.638246 2.1:-35895290 None:intergenic
GGTGGTGGTGAGGATGCAAA+AGG 0.643346 2.1:-35895251 None:intergenic
GTGAAGGTTCCTTATGACGG+CGG 0.647906 2.1:+35894307 MS.gene045791:CDS
AGGGACAATACAATGTGCAA+TGG 0.648772 2.1:+35894178 MS.gene045791:intron
GGCAATACAGGAGGTACTGG+TGG 0.650197 2.1:-35895269 None:intergenic
ACCAGCAAGAAACCCAAAAG+GGG 0.650463 2.1:-35894368 None:intergenic
ATTGGTGAAGGACCTTACAC+TGG 0.655831 2.1:+35893373 MS.gene045791:CDS
AACTCCAAGAAACTTGCGGG+AGG 0.659750 2.1:+35894218 MS.gene045791:CDS
GTTGCTCAGCAATCTGACTG+AGG 0.669894 2.1:+35895040 MS.gene045791:CDS
AGTCCTAGAGGCAATACAGG+AGG 0.688689 2.1:-35895278 None:intergenic
AGTGAAGTTCAAGAATCTGA+GGG 0.700276 2.1:+35895371 MS.gene045791:CDS
GTGGATGTAGATCCTAACAG+TGG 0.747207 2.1:+35894391 MS.gene045791:CDS
TCTAGGACTAAGAGTCAATG+CGG 0.760927 2.1:+35895292 MS.gene045791:CDS
GAGTTTCGACTACAACACAG+GGG 0.803781 2.1:+35894252 MS.gene045791:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATATAAATCATATTTTA+TGG - chr2.1:35894108-35894127 None:intergenic 10.0%
!!! ATCCATTTTTATAGTTTTAA+AGG + chr2.1:35893580-35893599 MS.gene045791:intron 15.0%
!!! TACCTTTAAAACTATAAAAA+TGG - chr2.1:35893585-35893604 None:intergenic 15.0%
!! AAAAATACACTTATAGTAGA+AGG + chr2.1:35893962-35893981 MS.gene045791:intron 20.0%
!! AAAATACACTTATAGTAGAA+GGG + chr2.1:35893963-35893982 MS.gene045791:intron 20.0%
!! AACATATATCAAAAAGATGA+TGG + chr2.1:35894781-35894800 MS.gene045791:intron 20.0%
!! AAGCAAAACTTATATTAAGA+AGG + chr2.1:35893631-35893650 MS.gene045791:intron 20.0%
!! AATGTTGCATTAATAATTGA+TGG + chr2.1:35894850-35894869 MS.gene045791:intron 20.0%
!! AGCAAAACTTATATTAAGAA+GGG + chr2.1:35893632-35893651 MS.gene045791:intron 20.0%
!! TGCAATAAAAATAACTAGTA+AGG - chr2.1:35894831-35894850 None:intergenic 20.0%
!!! ATAAGTGTATTTTTTCGAAT+AGG - chr2.1:35893956-35893975 None:intergenic 20.0%
!!! TAAGTGTATTTTTTCGAATA+GGG - chr2.1:35893955-35893974 None:intergenic 20.0%
! AACTTATATTAAGAAGGGAA+AGG + chr2.1:35893637-35893656 MS.gene045791:intron 25.0%
! ATATAGCTGATGCTTATTAT+GGG + chr2.1:35894281-35894300 MS.gene045791:CDS 25.0%
! ATCGCAGTTCAAAATATTAT+CGG - chr2.1:35893538-35893557 None:intergenic 25.0%
! TATATAGCTGATGCTTATTA+TGG + chr2.1:35894280-35894299 MS.gene045791:CDS 25.0%
! TCAATTGACAATGTGAAATT+CGG + chr2.1:35894564-35894583 MS.gene045791:intron 25.0%
! TGAGTAGATAGTATATTCTA+TGG - chr2.1:35893841-35893860 None:intergenic 25.0%
!! TCTTTTCATGTAACTAAAGT+TGG + chr2.1:35894126-35894145 MS.gene045791:intron 25.0%
!!! AGTTTTGCTTCTTTGAAAAA+CGG - chr2.1:35893621-35893640 None:intergenic 25.0%
AAATAAACGATTCCACTGTT+AGG - chr2.1:35894406-35894425 None:intergenic 30.0%
AACTACAGTTCAACATATTG+TGG - chr2.1:35893997-35894016 None:intergenic 30.0%
ACCAATAGAGTTAAATGCTA+AGG - chr2.1:35893359-35893378 None:intergenic 30.0%
ACTAAGGAGAAAAGATCATA+CGG + chr2.1:35894974-35894993 MS.gene045791:CDS 30.0%
ACTACAGTTCAACATATTGT+GGG - chr2.1:35893996-35894015 None:intergenic 30.0%
AGCAACATAGTTGTTATCAT+TGG + chr2.1:35893235-35893254 MS.gene045791:CDS 30.0%
AGGTATGAGTCTATATGTAA+TGG + chr2.1:35893472-35893491 MS.gene045791:intron 30.0%
AGGTTAAATCAAGACATTGT+TGG + chr2.1:35894152-35894171 MS.gene045791:intron 30.0%
AGTTAAATGCTAAGGATTCA+GGG - chr2.1:35893351-35893370 None:intergenic 30.0%
ATTCTATGGAATGTATCTCT+AGG - chr2.1:35893827-35893846 None:intergenic 30.0%
CTAACATGAATGTCTATGAT+AGG + chr2.1:35894064-35894083 MS.gene045791:intron 30.0%
CTTGTTGCTAATAATCTAGA+AGG + chr2.1:35894343-35894362 MS.gene045791:CDS 30.0%
CTTTCAACAACAATCACAAA+AGG + chr2.1:35893741-35893760 MS.gene045791:intron 30.0%
GCAACATAGTTGTTATCATT+GGG + chr2.1:35893236-35893255 MS.gene045791:CDS 30.0%
GTGTAGGTCAATTATAATTG+TGG + chr2.1:35894920-35894939 MS.gene045791:intron 30.0%
TCCTTAGCATTTAACTCTAT+TGG + chr2.1:35893355-35893374 MS.gene045791:CDS 30.0%
TTAAAAATAGACATCTCTCG+TGG - chr2.1:35894030-35894049 None:intergenic 30.0%
TTGTTGGATCATATCTGAAT+AGG - chr2.1:35895004-35895023 None:intergenic 30.0%
! AGATGATGAATAGAGTATCA+GGG - chr2.1:35893272-35893291 None:intergenic 30.0%
! ATATCTGAAGTGTATGCATT+AGG - chr2.1:35895155-35895174 None:intergenic 30.0%
! GCATTAATAATTGATGGTAG+TGG + chr2.1:35894856-35894875 MS.gene045791:intron 30.0%
! TAGATGATGAATAGAGTATC+AGG - chr2.1:35893273-35893292 None:intergenic 30.0%
! TTCTTTGAAAAACGGTTTAG+AGG - chr2.1:35893613-35893632 None:intergenic 30.0%
!! CGTTGTATGTTCTTAGTTTT+AGG - chr2.1:35893696-35893715 None:intergenic 30.0%
AACATACCAAGATAGAGGTT+TGG - chr2.1:35893908-35893927 None:intergenic 35.0%
AATCAAGACATTGTTGGTAC+AGG + chr2.1:35894158-35894177 MS.gene045791:intron 35.0%
AATCGAGAGGAGAATATCAT+AGG - chr2.1:35894608-35894627 None:intergenic 35.0%
AATGTAGTTTCGTTCGTTGT+TGG - chr2.1:35895020-35895039 None:intergenic 35.0%
AGCTGCTCTTACTTACTAAA+AGG + chr2.1:35894755-35894774 MS.gene045791:intron 35.0%
AGTGAAGTTCAAGAATCTGA+GGG + chr2.1:35895371-35895390 MS.gene045791:CDS 35.0%
ATCAAGACATTGTTGGTACA+GGG + chr2.1:35894159-35894178 MS.gene045791:intron 35.0%
ATCATGTAGACAGAGTAGTA+TGG - chr2.1:35894464-35894483 None:intergenic 35.0%
ATGTAGCAACTAAAATCGAG+AGG - chr2.1:35894621-35894640 None:intergenic 35.0%
CTAAGGAGAAAAGATCATAC+GGG + chr2.1:35894975-35894994 MS.gene045791:CDS 35.0%
CTACAGTTCAACATATTGTG+GGG - chr2.1:35893995-35894014 None:intergenic 35.0%
GAGTTAAATGCTAAGGATTC+AGG - chr2.1:35893352-35893371 None:intergenic 35.0%
GCATTTAACTCTATTGGTGA+AGG + chr2.1:35893361-35893380 MS.gene045791:CDS 35.0%
GTTGTGATGATTTGATATGC+CGG - chr2.1:35894722-35894741 None:intergenic 35.0%
TACAATGTGCAATGGCATTT+CGG + chr2.1:35894186-35894205 MS.gene045791:CDS 35.0%
TGTGGAACCAAATATTTGCA+GGG + chr2.1:35894938-35894957 MS.gene045791:intron 35.0%
TTGTGATGATTTGATATGCC+GGG - chr2.1:35894721-35894740 None:intergenic 35.0%
TTGTGGAACCAAATATTTGC+AGG + chr2.1:35894937-35894956 MS.gene045791:intron 35.0%
! CATGTAACTAAAGTTGGTTG+AGG + chr2.1:35894132-35894151 MS.gene045791:intron 35.0%
! CTTTTCTCCTTAGTAGTTTC+TGG - chr2.1:35894968-35894987 None:intergenic 35.0%
! TCTGTCAAGTAATTTGCAGT+GGG - chr2.1:35893302-35893321 None:intergenic 35.0%
! TGAGGTGTTTAGTACTGAAT+CGG + chr2.1:35895346-35895365 MS.gene045791:CDS 35.0%
!!! TTCCATGTGATTTTAGCTGT+GGG + chr2.1:35894488-35894507 MS.gene045791:intron 35.0%
!!! TTTCCATGTGATTTTAGCTG+TGG + chr2.1:35894487-35894506 MS.gene045791:intron 35.0%
ACACTTATAGTAGAAGGGTC+TGG + chr2.1:35893968-35893987 MS.gene045791:intron 40.0%
AGAGCAGCTCATATGCTAAA+AGG - chr2.1:35894744-35894763 None:intergenic 40.0%
AGATATATTCTTGCGCCTTC+CGG + chr2.1:35895169-35895188 MS.gene045791:CDS 40.0%
AGGGACAATACAATGTGCAA+TGG + chr2.1:35894178-35894197 MS.gene045791:intron 40.0%
AGTATAAGGCGAACAGAATC+AGG + chr2.1:35895111-35895130 MS.gene045791:CDS 40.0%
AGTGGAACATACCAAGATAG+AGG - chr2.1:35893913-35893932 None:intergenic 40.0%
CAGTGAAGTTCAAGAATCTG+AGG + chr2.1:35895370-35895389 MS.gene045791:CDS 40.0%
CATATAGACTCATACCTGTC+TGG - chr2.1:35893469-35893488 None:intergenic 40.0%
CCAAGATAGAGGTTTGGAAA+TGG - chr2.1:35893902-35893921 None:intergenic 40.0%
CCATTTCCAAACCTCTATCT+TGG + chr2.1:35893899-35893918 MS.gene045791:intron 40.0%
CTTGTGAAGGTTCCTTATGA+CGG + chr2.1:35894304-35894323 MS.gene045791:CDS 40.0%
GAAGACCAGATAACATCAGA+AGG + chr2.1:35895192-35895211 MS.gene045791:CDS 40.0%
GAGTACTAACTGTAGAGAAC+AGG + chr2.1:35894673-35894692 MS.gene045791:intron 40.0%
GAGTTCCTTCTGATGTTATC+TGG - chr2.1:35895200-35895219 None:intergenic 40.0%
GTACTAAACACCTCAACAAG+AGG - chr2.1:35895341-35895360 None:intergenic 40.0%
GTGAAATGTGTGCAAACTCA+AGG - chr2.1:35893447-35893466 None:intergenic 40.0%
TCAGAACTCCAAGAAACTTG+CGG + chr2.1:35894214-35894233 MS.gene045791:CDS 40.0%
TCGCATGTTCTATCAAGTGT+AGG + chr2.1:35894904-35894923 MS.gene045791:intron 40.0%
TGAGTTTCGACTACAACACA+GGG + chr2.1:35894251-35894270 MS.gene045791:CDS 40.0%
TGCTTATTATGGGCTTGTGA+AGG + chr2.1:35894291-35894310 MS.gene045791:CDS 40.0%
TGGAGATCCCTGCAAATATT+TGG - chr2.1:35894948-35894967 None:intergenic 40.0%
TGTCCTTGTTAGCGAGTATA+AGG + chr2.1:35895097-35895116 MS.gene045791:CDS 40.0%
TGTGATGATTTGATATGCCG+GGG - chr2.1:35894720-35894739 None:intergenic 40.0%
TTCCCACAGCTAAAATCACA+TGG - chr2.1:35894493-35894512 None:intergenic 40.0%
TTGAGTTTCGACTACAACAC+AGG + chr2.1:35894250-35894269 MS.gene045791:CDS 40.0%
! AATCTAGAAGGAACCCCTTT+TGG + chr2.1:35894355-35894374 MS.gene045791:CDS 40.0%
! ATCAGGAGATTCTGGTTAAC+AGG + chr2.1:35895128-35895147 MS.gene045791:CDS 40.0%
! ATCTAGAAGGAACCCCTTTT+GGG + chr2.1:35894356-35894375 MS.gene045791:CDS 40.0%
! GAACTCGATGAACGAGTTTT+GGG + chr2.1:35895214-35895233 MS.gene045791:CDS 40.0%
! GTCTGTCAAGTAATTTGCAG+TGG - chr2.1:35893303-35893322 None:intergenic 40.0%
! TCTAGGACTAAGAGTCAATG+CGG + chr2.1:35895292-35895311 MS.gene045791:CDS 40.0%
ACACCAGCAAGAAACCCAAA+AGG - chr2.1:35894373-35894392 None:intergenic 45.0%
ACCAGCAAGAAACCCAAAAG+GGG - chr2.1:35894371-35894390 None:intergenic 45.0%
ATTGGTGAAGGACCTTACAC+TGG + chr2.1:35893373-35893392 MS.gene045791:CDS 45.0%
CACCAGCAAGAAACCCAAAA+GGG - chr2.1:35894372-35894391 None:intergenic 45.0%
CAGAACTCCAAGAAACTTGC+GGG + chr2.1:35894215-35894234 MS.gene045791:CDS 45.0%
CCATCAGAAACACCAGTGTA+AGG - chr2.1:35893388-35893407 None:intergenic 45.0%
CGAACAGAATCAGGAGATTC+TGG + chr2.1:35895120-35895139 MS.gene045791:CDS 45.0%
CTTAGTCCTAGAGGCAATAC+AGG - chr2.1:35895284-35895303 None:intergenic 45.0%
GAGTTTCGACTACAACACAG+GGG + chr2.1:35894252-35894271 MS.gene045791:CDS 45.0%
GATATATTCTTGCGCCTTCC+GGG + chr2.1:35895170-35895189 MS.gene045791:CDS 45.0%
GGGATCTCCAGAAACTACTA+AGG + chr2.1:35894958-35894977 MS.gene045791:intron 45.0%
GTGGATGTAGATCCTAACAG+TGG + chr2.1:35894391-35894410 MS.gene045791:CDS 45.0%
TACCTTCCATCACCACTAAC+AGG + chr2.1:35893325-35893344 MS.gene045791:CDS 45.0%
TAGTCGAAACTCAACCCCAT+AGG - chr2.1:35894244-35894263 None:intergenic 45.0%
TCGCCTTATACTCGCTAACA+AGG - chr2.1:35895103-35895122 None:intergenic 45.0%
TTGCACACATTTCACCAGAC+AGG + chr2.1:35893452-35893471 MS.gene045791:CDS 45.0%
! AGCAATCTGACTGAGGCATT+TGG + chr2.1:35895047-35895066 MS.gene045791:CDS 45.0%
! CAATCTGACTGAGGCATTTG+GGG + chr2.1:35895049-35895068 MS.gene045791:CDS 45.0%
! CCTTACACTGGTGTTTCTGA+TGG + chr2.1:35893385-35893404 MS.gene045791:CDS 45.0%
! CTGATGTTATCTGGTCTTCC+CGG - chr2.1:35895191-35895210 None:intergenic 45.0%
! GCAATCTGACTGAGGCATTT+GGG + chr2.1:35895048-35895067 MS.gene045791:CDS 45.0%
! GGAACTCGATGAACGAGTTT+TGG + chr2.1:35895213-35895232 MS.gene045791:CDS 45.0%
!! GCATTGACTCTTAGTCCTAG+AGG - chr2.1:35895293-35895312 None:intergenic 45.0%
!!! TTTTGGGTTTCTTGCTGGTG+TGG + chr2.1:35894372-35894391 MS.gene045791:CDS 45.0%
AACTCCAAGAAACTTGCGGG+AGG + chr2.1:35894218-35894237 MS.gene045791:CDS 50.0%
AAGGATTCAGGGCCTGTTAG+TGG - chr2.1:35893340-35893359 None:intergenic 50.0%
AGAGTCTGTGCCTCTTGTTG+AGG + chr2.1:35895328-35895347 MS.gene045791:CDS 50.0%
AGTCCTAGAGGCAATACAGG+AGG - chr2.1:35895281-35895300 None:intergenic 50.0%
CTATGATAGGAGCAGACGTG+TGG + chr2.1:35894077-35894096 MS.gene045791:intron 50.0%
GAATAGGGCGACTGATTGTG+AGG - chr2.1:35893940-35893959 None:intergenic 50.0%
GACTGATTGTGAGGAGGTAG+TGG - chr2.1:35893931-35893950 None:intergenic 50.0%
GGACTAAGAGTCAATGCGGA+AGG + chr2.1:35895296-35895315 MS.gene045791:CDS 50.0%
GTACCTCCTGTATTGCCTCT+AGG + chr2.1:35895275-35895294 MS.gene045791:CDS 50.0%
GTGAAGGTTCCTTATGACGG+CGG + chr2.1:35894307-35894326 MS.gene045791:CDS 50.0%
GTTGCTCAGCAATCTGACTG+AGG + chr2.1:35895040-35895059 MS.gene045791:CDS 50.0%
TGATTTGATATGCCGGGGTG+TGG - chr2.1:35894715-35894734 None:intergenic 50.0%
! AGAGGCAATACAGGAGGTAC+TGG - chr2.1:35895275-35895294 None:intergenic 50.0%
! TGTTATCTGGTCTTCCCGGA+AGG - chr2.1:35895187-35895206 None:intergenic 50.0%
!! AATACAGGAGGTACTGGTGG+TGG - chr2.1:35895269-35895288 None:intergenic 50.0%
!!! ACCCCTTTTGGGTTTCTTGC+TGG + chr2.1:35894367-35894386 MS.gene045791:CDS 50.0%
!!! CTCGATGAACGAGTTTTGGG+TGG + chr2.1:35895217-35895236 MS.gene045791:CDS 50.0%
AAACTTGCGGGAGGCCTATG+GGG + chr2.1:35894227-35894246 MS.gene045791:CDS 55.0%
AGAAACTTGCGGGAGGCCTA+TGG + chr2.1:35894225-35894244 MS.gene045791:CDS 55.0%
CCAGCTCACGCTACAAGATC+AGG + chr2.1:35894434-35894453 MS.gene045791:CDS 55.0%
CCTGATCTTGTAGCGTGAGC+TGG - chr2.1:35894437-35894456 None:intergenic 55.0%
GAAACTTGCGGGAGGCCTAT+GGG + chr2.1:35894226-35894245 MS.gene045791:CDS 55.0%
GGGGTAGCAGTTAGCAACGA+TGG + chr2.1:35895068-35895087 MS.gene045791:CDS 55.0%
TAGGCCTCCCGCAAGTTTCT+TGG - chr2.1:35894225-35894244 None:intergenic 55.0%
TAGGGCGACTGATTGTGAGG+AGG - chr2.1:35893937-35893956 None:intergenic 55.0%
TCAGGGCCTGTTAGTGGTGA+TGG - chr2.1:35893334-35893353 None:intergenic 55.0%
! CTTGTAGCGTGAGCTGGCTT+CGG - chr2.1:35894431-35894450 None:intergenic 55.0%
! GGTGGTGGTGAGGATGCAAA+AGG - chr2.1:35895254-35895273 None:intergenic 55.0%
!! GGCAATACAGGAGGTACTGG+TGG - chr2.1:35895272-35895291 None:intergenic 55.0%
!! GGCCTGTTAGTGGTGATGGA+AGG - chr2.1:35893330-35893349 None:intergenic 55.0%
GTTGCAGCACCGCCGTCATA+AGG - chr2.1:35894319-35894338 None:intergenic 60.0%
TGCGTGTTCGATCCACACCC+CGG + chr2.1:35894700-35894719 MS.gene045791:intron 60.0%
!! AGGAGGTACTGGTGGTGGTG+AGG - chr2.1:35895264-35895283 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 35893229 35895448 35893229 ID=MS.gene045791
chr2.1 mRNA 35893229 35895448 35893229 ID=MS.gene045791.t1;Parent=MS.gene045791
chr2.1 exon 35893229 35893473 35893229 ID=MS.gene045791.t1.exon1;Parent=MS.gene045791.t1
chr2.1 CDS 35893229 35893473 35893229 ID=cds.MS.gene045791.t1;Parent=MS.gene045791.t1
chr2.1 exon 35894180 35894455 35894180 ID=MS.gene045791.t1.exon2;Parent=MS.gene045791.t1
chr2.1 CDS 35894180 35894455 35894180 ID=cds.MS.gene045791.t1;Parent=MS.gene045791.t1
chr2.1 exon 35894959 35895448 35894959 ID=MS.gene045791.t1.exon3;Parent=MS.gene045791.t1
chr2.1 CDS 35894959 35895448 35894959 ID=cds.MS.gene045791.t1;Parent=MS.gene045791.t1
Gene Sequence

>MS.gene045791

ATGACTAGCAACATAGTTGTTATCATTGGGTTCTTAATCTCCCTGATACTCTATTCATCATCTATAGTTGCCCACTGCAAATTACTTGACAGACTATACCTTCCATCACCACTAACAGGCCCTGAATCCTTAGCATTTAACTCTATTGGTGAAGGACCTTACACTGGTGTTTCTGATGGAAGAATTCTTAAATATGATGAAGAATGTTCTTGTTTCCTTGAGTTTGCACACATTTCACCAGACAGGTATGAGTCTATATGTAATGGATGTCTATTGTTATATAACTTATAATAGAATGTTTTAACTCCGATAATATTTTGAACTGCGATTCGAATATCTGTCATGAGAGATATCCATTTTTATAGTTTTAAAGGTATGTATCCTCTAAACCGTTTTTCAAAGAAGCAAAACTTATATTAAGAAGGGAAAGGTATGTGTTTACTAAAAACTTTTTTATTTTCATTCCTAAAACTAAGAACATACAACGTTTATTTCTCGTAAAAACATTTCTACTTTCAACAACAATCACAAAAGGAAAGATATAAGATAAAACAAAATCAGAACTGAAATAGCGACAAACTCGCAGCTAATGATGCCTAGAGATACATTCCATAGAATATACTATCTACTCATAAAAGAGACAAGCTACAAATTTAGATCGAGTCAAAAACCATTTCCAAACCTCTATCTTGGTATGTTCCACTACCTCCTCACAATCAGTCGCCCTATTCGAAAAAATACACTTATAGTAGAAGGGTCTGGTCCCCACAATATGTTGAACTGTAGTTCGAATATTTGCCACGAGAGATGTCTATTTTTAATATCAACAACTCTTCTAACATGAATGTCTATGATAGGAGCAGACGTGTGGTTTCGCCATAAAATATGATTTATATTTCTTTTCATGTAACTAAAGTTGGTTGAGGTTAAATCAAGACATTGTTGGTACAGGGACAATACAATGTGCAATGGCATTTCGGACTTCTCAGAACTCCAAGAAACTTGCGGGAGGCCTATGGGGTTGAGTTTCGACTACAACACAGGGGAATTATATATAGCTGATGCTTATTATGGGCTTGTGAAGGTTCCTTATGACGGCGGTGCTGCAACACAACTTGTTGCTAATAATCTAGAAGGAACCCCTTTTGGGTTTCTTGCTGGTGTGGATGTAGATCCTAACAGTGGAATCGTTTATTTCACCGAAGCCAGCTCACGCTACAAGATCAGGTAATCCATACTACTCTGTCTACATGATTTTTTTCCATGTGATTTTAGCTGTGGGAAATTGACAATGTGAATAAGTTTGTAAACTTTATATATATATAAGTTTGTATCTCAATTGACAATGTGAAATTCGGCATAAATAAGTTTTTAGACCTATGATATTCTCCTCTCGATTTTAGTTGCTACATAAAATTTCATCGACTTTTTATTTTGTTTTAAAGAGTACTAACTGTAGAGAACAGGATATTGCGTGTTCGATCCACACCCCGGCATATCAAATCATCACAACCTTTTAGCATATGAGCTGCTCTTACTTACTAAAAGGTTCAACATATATCAAAAAGATGATGGTGAAAACAAAAGATATGATAAAATCCTTACTAGTTATTTTTATTGCAATGTTGCATTAATAATTGATGGTAGTGGATTCACACAATAATTGTTCATTGTATCGCATGTTCTATCAAGTGTAGGTCAATTATAATTGTGGAACCAAATATTTGCAGGGATCTCCAGAAACTACTAAGGAGAAAAGATCATACGGGAAGCCTATTCAGATATGATCCAACAACGAACGAAACTACATTGTTGCTCAGCAATCTGACTGAGGCATTTGGGGTAGCAGTTAGCAACGATGGTTCATTTGTCCTTGTTAGCGAGTATAAGGCGAACAGAATCAGGAGATTCTGGTTAACAGGACCTAATGCATACACTTCAGATATATTCTTGCGCCTTCCGGGAAGACCAGATAACATCAGAAGGAACTCGATGAACGAGTTTTGGGTGGCAGTGAATTATCCTTTTGCATCCTCACCACCACCAGTACCTCCTGTATTGCCTCTAGGACTAAGAGTCAATGCGGAAGGTTTAATTATAGAGTCTGTGCCTCTTGTTGAGGTGTTTAGTACTGAATCGGTCAGTGAAGTTCAAGAATCTGAGGGAAGACTCTATGCTACATCGTTGAGTGATAACTATGCTAGCATCCTCAAGCTCTAG
Protein sequence

>MS.gene045791.t1

MTSNIVVIIGFLISLILYSSSIVAHCKLLDRLYLPSPLTGPESLAFNSIGEGPYTGVSDGRILKYDEECSCFLEFAHISPDRDNTMCNGISDFSELQETCGRPMGLSFDYNTGELYIADAYYGLVKVPYDGGAATQLVANNLEGTPFGFLAGVDVDPNSGIVYFTEASSRYKIRDLQKLLRRKDHTGSLFRYDPTTNETTLLLSNLTEAFGVAVSNDGSFVLVSEYKANRIRRFWLTGPNAYTSDIFLRLPGRPDNIRRNSMNEFWVAVNYPFASSPPPVPPVLPLGLRVNAEGLIIESVPLVEVFSTESVSEVQESEGRLYATSLSDNYASILKL