Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68976.t1 | RHN63780.1 | 96.4 | 334 | 12 | 0 | 1 | 334 | 14 | 347 | 1.30E-181 | 645.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68976.t1 | P94111 | 43.3 | 326 | 169 | 7 | 11 | 330 | 7 | 322 | 8.7e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68976.t1 | G7JT37 | 96.4 | 334 | 12 | 0 | 1 | 334 | 1 | 334 | 9.3e-182 | 645.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044500 | MS.gene68976 | PPI |
| MS.gene044502 | MS.gene68976 | PPI |
| MS.gene83238 | MS.gene68976 | PPI |
| MS.gene025506 | MS.gene68976 | PPI |
| MS.gene044501 | MS.gene68976 | PPI |
| MS.gene033015 | MS.gene68976 | PPI |
| MS.gene68976 | MS.gene038798 | PPI |
| MS.gene68976 | MS.gene68975 | PPI |
| MS.gene08295 | MS.gene68976 | PPI |
| MS.gene045791 | MS.gene68976 | PPI |
| MS.gene68976 | MS.gene063529 | PPI |
| MS.gene68976 | MS.gene35843 | PPI |
| MS.gene023328 | MS.gene68976 | PPI |
| MS.gene78185 | MS.gene68976 | PPI |
| MS.gene033026 | MS.gene68976 | PPI |
| MS.gene045793 | MS.gene68976 | PPI |
| MS.gene033012 | MS.gene68976 | PPI |
| MS.gene68976 | MS.gene033012 | PPI |
| MS.gene038810 | MS.gene68976 | PPI |
| MS.gene038798 | MS.gene68976 | PPI |
| MS.gene78183 | MS.gene68976 | PPI |
| MS.gene044490 | MS.gene68976 | PPI |
| MS.gene68977 | MS.gene68976 | PPI |
| MS.gene050115 | MS.gene68976 | PPI |
| MS.gene033013 | MS.gene68976 | PPI |
| MS.gene68976 | MS.gene044501 | PPI |
| MS.gene34908 | MS.gene68976 | PPI |
| MS.gene83236 | MS.gene68976 | PPI |
| MS.gene023327 | MS.gene68976 | PPI |
| MS.gene08297 | MS.gene68976 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68976.t1 | MTR_4g112650 | 96.407 | 334 | 12 | 0 | 1 | 334 | 1 | 334 | 0.0 | 657 |
| MS.gene68976.t1 | MTR_4g112630 | 80.357 | 336 | 55 | 2 | 1 | 335 | 1 | 326 | 0.0 | 536 |
| MS.gene68976.t1 | MTR_4g112670 | 78.806 | 335 | 67 | 2 | 1 | 333 | 2 | 334 | 0.0 | 529 |
| MS.gene68976.t1 | MTR_4g112620 | 74.474 | 333 | 46 | 3 | 2 | 334 | 7 | 300 | 1.63e-173 | 483 |
| MS.gene68976.t1 | MTR_2g058450 | 54.397 | 307 | 137 | 2 | 26 | 331 | 28 | 332 | 5.65e-109 | 321 |
| MS.gene68976.t1 | MTR_0003s0530 | 76.503 | 183 | 39 | 2 | 145 | 325 | 1 | 181 | 6.26e-96 | 283 |
| MS.gene68976.t1 | MTR_7g490330 | 41.284 | 327 | 166 | 5 | 9 | 329 | 13 | 319 | 1.47e-77 | 241 |
| MS.gene68976.t1 | MTR_2g058410 | 52.790 | 233 | 109 | 1 | 102 | 334 | 1 | 232 | 4.97e-74 | 228 |
| MS.gene68976.t1 | MTR_7g490350 | 36.134 | 357 | 191 | 5 | 5 | 329 | 12 | 363 | 1.10e-72 | 229 |
| MS.gene68976.t1 | MTR_7g090300 | 36.757 | 370 | 186 | 8 | 1 | 329 | 1 | 363 | 6.15e-69 | 220 |
| MS.gene68976.t1 | MTR_2g087780 | 38.710 | 341 | 170 | 8 | 25 | 333 | 60 | 393 | 1.02e-66 | 215 |
| MS.gene68976.t1 | MTR_5g091980 | 40.614 | 293 | 152 | 4 | 37 | 329 | 47 | 317 | 1.20e-66 | 213 |
| MS.gene68976.t1 | MTR_7g090320 | 37.941 | 340 | 175 | 8 | 28 | 333 | 48 | 385 | 9.12e-66 | 213 |
| MS.gene68976.t1 | MTR_4g050190 | 38.906 | 329 | 163 | 8 | 36 | 333 | 68 | 389 | 1.60e-64 | 209 |
| MS.gene68976.t1 | MTR_7g090310 | 36.778 | 329 | 173 | 7 | 38 | 333 | 58 | 384 | 3.29e-60 | 198 |
| MS.gene68976.t1 | MTR_2g099030 | 32.840 | 338 | 194 | 4 | 26 | 333 | 70 | 404 | 4.67e-59 | 195 |
| MS.gene68976.t1 | MTR_4g112840 | 77.451 | 102 | 21 | 1 | 172 | 273 | 56 | 155 | 2.11e-48 | 160 |
| MS.gene68976.t1 | MTR_5g077620 | 73.810 | 84 | 19 | 3 | 4 | 87 | 2 | 82 | 4.51e-32 | 117 |
| MS.gene68976.t1 | MTR_8g074210 | 34.043 | 235 | 129 | 5 | 36 | 270 | 76 | 284 | 5.39e-29 | 115 |
| MS.gene68976.t1 | MTR_8g074270 | 33.047 | 233 | 130 | 5 | 38 | 270 | 78 | 284 | 2.78e-27 | 110 |
| MS.gene68976.t1 | MTR_8g074170 | 33.047 | 233 | 130 | 5 | 38 | 270 | 78 | 284 | 3.87e-27 | 110 |
| MS.gene68976.t1 | MTR_2g058430 | 48.077 | 104 | 45 | 1 | 75 | 178 | 43 | 137 | 2.18e-22 | 95.1 |
| MS.gene68976.t1 | MTR_2g042430 | 30.736 | 231 | 131 | 8 | 39 | 268 | 77 | 279 | 3.30e-22 | 96.3 |
| MS.gene68976.t1 | MTR_2g042370 | 33.758 | 157 | 99 | 4 | 113 | 268 | 116 | 268 | 6.57e-20 | 89.7 |
| MS.gene68976.t1 | MTR_2g042420 | 25.472 | 318 | 186 | 13 | 39 | 333 | 58 | 347 | 1.43e-19 | 88.6 |
| MS.gene68976.t1 | MTR_1g075865 | 39.815 | 108 | 62 | 2 | 150 | 257 | 7 | 111 | 6.37e-17 | 76.6 |
| MS.gene68976.t1 | MTR_8g074320 | 33.333 | 168 | 100 | 6 | 63 | 224 | 58 | 219 | 7.51e-16 | 75.9 |
| MS.gene68976.t1 | MTR_5g093640 | 40.816 | 98 | 12 | 2 | 238 | 335 | 52 | 103 | 1.33e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68976.t1 | AT1G74020 | 44.444 | 306 | 158 | 6 | 27 | 330 | 27 | 322 | 9.47e-75 | 234 |
| MS.gene68976.t1 | AT1G74010 | 43.607 | 305 | 161 | 7 | 27 | 330 | 26 | 320 | 1.05e-70 | 223 |
| MS.gene68976.t1 | AT1G74000 | 41.967 | 305 | 167 | 6 | 27 | 330 | 29 | 324 | 1.95e-69 | 220 |
| MS.gene68976.t1 | AT3G57030 | 39.185 | 319 | 163 | 4 | 37 | 329 | 55 | 368 | 2.52e-69 | 221 |
| MS.gene68976.t1 | AT1G08470 | 40.248 | 323 | 158 | 8 | 36 | 329 | 67 | 383 | 9.35e-69 | 220 |
| MS.gene68976.t1 | AT3G57010 | 42.683 | 246 | 133 | 3 | 25 | 270 | 41 | 278 | 6.71e-66 | 212 |
| MS.gene68976.t1 | AT5G22020 | 38.720 | 328 | 164 | 10 | 36 | 333 | 73 | 393 | 3.66e-64 | 208 |
| MS.gene68976.t1 | AT5G22020 | 38.720 | 328 | 164 | 10 | 36 | 333 | 73 | 393 | 3.66e-64 | 208 |
| MS.gene68976.t1 | AT5G22020 | 38.720 | 328 | 164 | 10 | 36 | 333 | 73 | 393 | 3.66e-64 | 208 |
| MS.gene68976.t1 | AT3G57020 | 41.057 | 246 | 137 | 2 | 25 | 270 | 40 | 277 | 4.65e-62 | 202 |
| MS.gene68976.t1 | AT2G41290 | 38.838 | 327 | 160 | 11 | 38 | 330 | 51 | 371 | 7.58e-59 | 194 |
| MS.gene68976.t1 | AT3G57020 | 39.024 | 246 | 128 | 2 | 25 | 270 | 40 | 263 | 3.24e-57 | 189 |
| MS.gene68976.t1 | AT2G41300 | 34.516 | 310 | 169 | 5 | 43 | 326 | 83 | 384 | 1.06e-55 | 186 |
| MS.gene68976.t1 | AT3G59530 | 37.247 | 247 | 147 | 3 | 29 | 270 | 75 | 318 | 1.19e-53 | 181 |
| MS.gene68976.t1 | AT3G59530 | 37.247 | 247 | 147 | 3 | 29 | 270 | 75 | 318 | 1.19e-53 | 181 |
| MS.gene68976.t1 | AT3G59530 | 37.247 | 247 | 147 | 3 | 29 | 270 | 75 | 318 | 1.19e-53 | 181 |
| MS.gene68976.t1 | AT3G51440 | 28.897 | 263 | 155 | 8 | 16 | 270 | 40 | 278 | 1.34e-22 | 97.4 |
| MS.gene68976.t1 | AT3G51420 | 27.378 | 347 | 192 | 15 | 16 | 331 | 40 | 357 | 1.13e-21 | 94.7 |
| MS.gene68976.t1 | AT3G51430 | 32.948 | 173 | 108 | 5 | 99 | 270 | 113 | 278 | 3.28e-19 | 87.8 |
| MS.gene68976.t1 | AT3G51430 | 32.370 | 173 | 109 | 5 | 99 | 270 | 113 | 278 | 5.58e-19 | 87.0 |
| MS.gene68976.t1 | AT3G51450 | 28.814 | 236 | 137 | 8 | 39 | 270 | 70 | 278 | 3.32e-18 | 85.1 |
Find 84 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCAGGAGGCCAATTT+TGG | 0.196374 | 8.1:-15261341 | MS.gene68976:CDS |
| TATGTAGCTGATGCTTATTT+TGG | 0.237520 | 8.1:-15262136 | MS.gene68976:CDS |
| TACTAACTGATATCCAAAAT+TGG | 0.256590 | 8.1:+15261328 | None:intergenic |
| GAATTCCTCTTGATGTTATC+TGG | 0.291665 | 8.1:+15261357 | None:intergenic |
| GCAATATGTGGAAGACCTTT+AGG | 0.300362 | 8.1:-15262190 | MS.gene68976:CDS |
| GATAACATCAAGAGGAATTC+AGG | 0.341738 | 8.1:-15261354 | MS.gene68976:CDS |
| AAATATGTTGGTTCAAATGA+AGG | 0.369592 | 8.1:-15262576 | MS.gene68976:CDS |
| CTTGATGTTATCTGGTCTTC+CGG | 0.376966 | 8.1:+15261365 | None:intergenic |
| ATCGGCAAACATAGTTGAAT+TGG | 0.376978 | 8.1:+15262054 | None:intergenic |
| AACTATGTTTGCCGATGGTT+TGG | 0.379978 | 8.1:-15262047 | MS.gene68976:CDS |
| TGAGTTGCATTCCCACCATT+GGG | 0.382610 | 8.1:+15262097 | None:intergenic |
| GAATTATTCATGCTACTTGC+CGG | 0.383828 | 8.1:-15261384 | MS.gene68976:CDS |
| TGAACCTCACTAGCCGCTTC+AGG | 0.389938 | 8.1:+15261195 | None:intergenic |
| AGTGGCAGTGGAGATAATTC+AGG | 0.393936 | 8.1:-15261579 | MS.gene68976:CDS |
| GTGTCTCTTGTTGAAGAGTA+TGG | 0.394726 | 8.1:-15261219 | MS.gene68976:CDS |
| TTCTTAGCAACACTGTTGTT+TGG | 0.400149 | 8.1:+15261526 | None:intergenic |
| GGATGTTCTACTTTACCTTC+AGG | 0.402383 | 8.1:-15261279 | MS.gene68976:CDS |
| TGTGGAAGACCTTTAGGATT+GGG | 0.405892 | 8.1:-15262184 | MS.gene68976:CDS |
| GGTGTTAGAGTGAATGAAAA+TGG | 0.407349 | 8.1:-15261258 | MS.gene68976:CDS |
| TGCTTGGATCATATCTCAAT+AGG | 0.426890 | 8.1:+15261553 | None:intergenic |
| TTGAGTTGCATTCCCACCAT+TGG | 0.429082 | 8.1:+15262096 | None:intergenic |
| GTAGAACATCCTGGAGATCT+TGG | 0.431021 | 8.1:+15261291 | None:intergenic |
| GATTTATATATTTACCTGTT+GGG | 0.432026 | 8.1:+15262528 | None:intergenic |
| GAGTACAATGGAACACTCTA+TGG | 0.432828 | 8.1:-15261171 | MS.gene68976:CDS |
| ACTGTTGTTTGGTTGGTGCT+TGG | 0.443361 | 8.1:+15261537 | None:intergenic |
| TGCCACTAGCTACCACTGTC+TGG | 0.447384 | 8.1:+15261595 | None:intergenic |
| CGATGGTTTGGATGTAGATC+CGG | 0.453120 | 8.1:-15262035 | MS.gene68976:CDS |
| TGGTTCAAATGAAGGTTTCA+AGG | 0.454128 | 8.1:-15262568 | MS.gene68976:CDS |
| TCAGGTCCTGTCACTGGTGC+TGG | 0.455170 | 8.1:+15262663 | None:intergenic |
| CTGAAGCTTGTTCAGTAATA+CGG | 0.466301 | 8.1:+15262689 | None:intergenic |
| AGAAATCTTACAGTGCCATC+TGG | 0.470622 | 8.1:-15261507 | MS.gene68976:CDS |
| CTTGTTAAGGTTGGCCCCAA+TGG | 0.472047 | 8.1:-15262112 | MS.gene68976:CDS |
| AGTAATACGGCTACCGATGA+TGG | 0.472632 | 8.1:+15262702 | None:intergenic |
| AAGGTCTTCCACATATTGCT+TGG | 0.472662 | 8.1:+15262194 | None:intergenic |
| TTAGGGACACCAAGATCTCC+AGG | 0.481801 | 8.1:-15261300 | MS.gene68976:CDS |
| ATGCTTACACTTCTCCCAAC+AGG | 0.489728 | 8.1:-15262542 | MS.gene68976:intron |
| GTTAAGGTTGGCCCCAATGG+TGG | 0.492288 | 8.1:-15262109 | MS.gene68976:CDS |
| ATGTGGAAGACCTTTAGGAT+TGG | 0.494905 | 8.1:-15262185 | MS.gene68976:CDS |
| TAGCAACACTGTTGTTTGGT+TGG | 0.501427 | 8.1:+15261530 | None:intergenic |
| AAATAAACGACTCCAGTGTC+CGG | 0.502679 | 8.1:+15262016 | None:intergenic |
| GGGAATGCAACTCAATTAGT+TGG | 0.502687 | 8.1:-15262088 | MS.gene68976:CDS |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.505698 | 8.1:+15262657 | None:intergenic |
| ACAGTGGTAGCTAGTGGCAG+TGG | 0.510345 | 8.1:-15261591 | MS.gene68976:CDS |
| TCATTCACTCTAACACCTGA+AGG | 0.522134 | 8.1:+15261264 | None:intergenic |
| GGAGTGGCAGTAAGCAAAGA+TGG | 0.525475 | 8.1:-15261486 | MS.gene68976:CDS |
| CTATCAAATGCAAGTGACTC+AGG | 0.525659 | 8.1:+15262645 | None:intergenic |
| CCATCAGAAGAAGTAACATA+AGG | 0.525792 | 8.1:+15262609 | None:intergenic |
| TCTACTGCGTTCTCCATCAT+CGG | 0.525948 | 8.1:-15262715 | MS.gene68976:CDS |
| CCTTATGTTACTTCTTCTGA+TGG | 0.527626 | 8.1:-15262609 | MS.gene68976:CDS |
| GACAGTGACAACCATCGACT+TGG | 0.528736 | 8.1:+15262755 | None:intergenic |
| TCACTTGCATTTGATAGAAA+CGG | 0.530670 | 8.1:-15262639 | MS.gene68976:CDS |
| AGGTTGCATAAGAAGCAAGC+AGG | 0.532375 | 8.1:+15261142 | None:intergenic |
| ATTCAGCGAGTGTGGTTGAA+AGG | 0.546046 | 8.1:-15261426 | MS.gene68976:CDS |
| TCAGTAGTCCAAGCAATATG+TGG | 0.548585 | 8.1:-15262202 | MS.gene68976:CDS |
| AATTCTGATGAATTTGCTCT+CGG | 0.549648 | 8.1:+15261402 | None:intergenic |
| CAGCTACCAGCACCAGTGAC+AGG | 0.551193 | 8.1:-15262669 | MS.gene68976:CDS |
| TTGCTTACTGCCACTCCAGA+TGG | 0.551639 | 8.1:+15261492 | None:intergenic |
| GAAGGTAAAGTAGAACATCC+TGG | 0.568828 | 8.1:+15261282 | None:intergenic |
| AATTCAACTATGTTTGCCGA+TGG | 0.570302 | 8.1:-15262052 | MS.gene68976:CDS |
| CAAACAGAATTCAGCGAGTG+TGG | 0.570481 | 8.1:-15261434 | MS.gene68976:CDS |
| TAATACCATGTCCAAGTCGA+TGG | 0.572475 | 8.1:-15262766 | None:intergenic |
| TTAAGGTTGGCCCCAATGGT+GGG | 0.574022 | 8.1:-15262108 | MS.gene68976:CDS |
| TTGGATGTAGATCCGGACAC+TGG | 0.580301 | 8.1:-15262028 | MS.gene68976:CDS |
| TGATTGAAACCCAATCCTAA+AGG | 0.582627 | 8.1:+15262175 | None:intergenic |
| TGGTCCTGAAGCGGCTAGTG+AGG | 0.589941 | 8.1:-15261199 | MS.gene68976:CDS |
| ATAGTTGAATTGGCTTGTGT+CGG | 0.596354 | 8.1:+15262064 | None:intergenic |
| GGTTGCATAAGAAGCAAGCA+GGG | 0.600341 | 8.1:+15261143 | None:intergenic |
| CTTGTAATTAGAGCTAGCTA+TGG | 0.601850 | 8.1:+15261991 | None:intergenic |
| AAAACTCTAGGGAGTAAATG+AGG | 0.602595 | 8.1:+15261122 | None:intergenic |
| TCTTACAGTGCCATCTGGAG+TGG | 0.604508 | 8.1:-15261502 | MS.gene68976:CDS |
| CGGATCTACATCCAAACCAT+CGG | 0.609491 | 8.1:+15262036 | None:intergenic |
| TTCCAGACAGTGGTAGCTAG+TGG | 0.612500 | 8.1:-15261597 | MS.gene68976:CDS |
| GACAACCATCGACTTGGACA+TGG | 0.613511 | 8.1:+15262761 | None:intergenic |
| GCATTTGATAGAAACGGTGG+AGG | 0.636595 | 8.1:-15262633 | MS.gene68976:CDS |
| AGGAATAGGACAGTCTGTGA+TGG | 0.636740 | 8.1:-15262238 | MS.gene68976:CDS |
| GAGTTGCATTCCCACCATTG+GGG | 0.641897 | 8.1:+15262098 | None:intergenic |
| CTTGCATTTGATAGAAACGG+TGG | 0.644459 | 8.1:-15262636 | MS.gene68976:CDS |
| GAAGACCAGATAACATCAAG+AGG | 0.646688 | 8.1:-15261362 | MS.gene68976:CDS |
| TACAATGGAACACTCTATGG+TGG | 0.656288 | 8.1:-15261168 | MS.gene68976:CDS |
| TTACAGAGATTTCCAGACAG+TGG | 0.662090 | 8.1:-15261607 | MS.gene68976:intron |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.673039 | 8.1:-15261183 | MS.gene68976:CDS |
| TGAAGAGTATGGTCCTGAAG+CGG | 0.674281 | 8.1:-15261208 | MS.gene68976:CDS |
| GGACTACTGAGAAGTCAGCA+AGG | 0.682750 | 8.1:+15262215 | None:intergenic |
| AACATCAAGAGGAATTCAGG+AGG | 0.698815 | 8.1:-15261351 | MS.gene68976:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATTATATTATTGTTTA+TGG | - | chr8.1:15262229-15262248 | MS.gene68976:CDS | 10.0% |
| !!! | ATGACTGTTTTTTATTTTTT+TGG | - | chr8.1:15261623-15261642 | MS.gene68976:intron | 15.0% |
| !! | AAGCAAAAATAGAAAATAAC+AGG | + | chr8.1:15262185-15262204 | None:intergenic | 20.0% |
| !! | GATTTATATATTTACCTGTT+GGG | + | chr8.1:15261362-15261381 | None:intergenic | 20.0% |
| !! | TGATTTATATATTTACCTGT+TGG | + | chr8.1:15261363-15261382 | None:intergenic | 20.0% |
| !!! | ATATCAGTTAGTAGTTTTTT+AGG | - | chr8.1:15262569-15262588 | MS.gene68976:CDS | 20.0% |
| !!! | GATATTTTATGAGAAGAAAT+GGG | + | chr8.1:15261980-15261999 | None:intergenic | 20.0% |
| !!! | GTTTTTTATTTTTTTGGTTC+AGG | - | chr8.1:15261629-15261648 | MS.gene68976:intron | 20.0% |
| !!! | TATCAGTTAGTAGTTTTTTA+GGG | - | chr8.1:15262570-15262589 | MS.gene68976:CDS | 20.0% |
| !!! | TGATATTTTATGAGAAGAAA+TGG | + | chr8.1:15261981-15262000 | None:intergenic | 20.0% |
| ! | TACTAACTGATATCCAAAAT+TGG | + | chr8.1:15262562-15262581 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTCAAATATGT+TGG | - | chr8.1:15261299-15261318 | MS.gene68976:CDS | 25.0% |
| !!! | AAATATGTTGGTTCAAATGA+AGG | - | chr8.1:15261311-15261330 | MS.gene68976:CDS | 25.0% |
| !!! | TATTTTTTTGGTTCAGGAAT+AGG | - | chr8.1:15261635-15261654 | MS.gene68976:intron | 25.0% |
| TCACTTGCATTTGATAGAAA+CGG | - | chr8.1:15261248-15261267 | MS.gene68976:CDS | 30.0% | |
| TGAATCCTACAAATTATTCG+AGG | + | chr8.1:15262213-15262232 | None:intergenic | 30.0% | |
| ! | AATTCTGATGAATTTGCTCT+CGG | + | chr8.1:15262488-15262507 | None:intergenic | 30.0% |
| ! | AGATGCTTTCTAAAAGAACA+CGG | + | chr8.1:15261491-15261510 | None:intergenic | 30.0% |
| ! | TATGTAGCTGATGCTTATTT+TGG | - | chr8.1:15261751-15261770 | MS.gene68976:intron | 30.0% |
| ! | TCTTTCCTCGAATAATTTGT+AGG | - | chr8.1:15262205-15262224 | MS.gene68976:CDS | 30.0% |
| !!! | TATTTTGGACTTGTTAAGGT+TGG | - | chr8.1:15261766-15261785 | MS.gene68976:intron | 30.0% |
| !!! | TGCTTATTTTGGACTTGTTA+AGG | - | chr8.1:15261762-15261781 | MS.gene68976:intron | 30.0% |
| AACGATCACTTGATTCATGT+TGG | + | chr8.1:15261402-15261421 | None:intergenic | 35.0% | |
| AATTCAACTATGTTTGCCGA+TGG | - | chr8.1:15261835-15261854 | MS.gene68976:intron | 35.0% | |
| ACCTCAATATCTTACATGGA+TGG | - | chr8.1:15262153-15262172 | MS.gene68976:CDS | 35.0% | |
| ACGATCACTTGATTCATGTT+GGG | + | chr8.1:15261401-15261420 | None:intergenic | 35.0% | |
| ATCGGCAAACATAGTTGAAT+TGG | + | chr8.1:15261836-15261855 | None:intergenic | 35.0% | |
| CCATCAGAAGAAGTAACATA+AGG | + | chr8.1:15261281-15261300 | None:intergenic | 35.0% | |
| CTTGTAATTAGAGCTAGCTA+TGG | + | chr8.1:15261899-15261918 | None:intergenic | 35.0% | |
| GAATTCCTCTTGATGTTATC+TGG | + | chr8.1:15262533-15262552 | None:intergenic | 35.0% | |
| GATAACATCAAGAGGAATTC+AGG | - | chr8.1:15262533-15262552 | MS.gene68976:intron | 35.0% | |
| GGTGTTAGAGTGAATGAAAA+TGG | - | chr8.1:15262629-15262648 | MS.gene68976:CDS | 35.0% | |
| TCCATCCATGTAAGATATTG+AGG | + | chr8.1:15262157-15262176 | None:intergenic | 35.0% | |
| TGACAAATGTGAATGTCACT+TGG | - | chr8.1:15262253-15262272 | MS.gene68976:intron | 35.0% | |
| TGATTGAAACCCAATCCTAA+AGG | + | chr8.1:15261715-15261734 | None:intergenic | 35.0% | |
| TGCTTGGATCATATCTCAAT+AGG | + | chr8.1:15262337-15262356 | None:intergenic | 35.0% | |
| TGGTTCAAATGAAGGTTTCA+AGG | - | chr8.1:15261319-15261338 | MS.gene68976:CDS | 35.0% | |
| TTCTTAGCAACACTGTTGTT+TGG | + | chr8.1:15262364-15262383 | None:intergenic | 35.0% | |
| ! | CCTTATGTTACTTCTTCTGA+TGG | - | chr8.1:15261278-15261297 | MS.gene68976:CDS | 35.0% |
| ! | CTGAAGCTTGTTCAGTAATA+CGG | + | chr8.1:15261201-15261220 | None:intergenic | 35.0% |
| ! | GAATTATTCATGCTACTTGC+CGG | - | chr8.1:15262503-15262522 | MS.gene68976:intron | 35.0% |
| !! | ATAGTTGAATTGGCTTGTGT+CGG | + | chr8.1:15261826-15261845 | None:intergenic | 35.0% |
| AAATAAACGACTCCAGTGTC+CGG | + | chr8.1:15261874-15261893 | None:intergenic | 40.0% | |
| AACATCAAGAGGAATTCAGG+AGG | - | chr8.1:15262536-15262555 | MS.gene68976:intron | 40.0% | |
| AACTATGTTTGCCGATGGTT+TGG | - | chr8.1:15261840-15261859 | MS.gene68976:intron | 40.0% | |
| AAGGTCTTCCACATATTGCT+TGG | + | chr8.1:15261696-15261715 | None:intergenic | 40.0% | |
| AGAAATCTTACAGTGCCATC+TGG | - | chr8.1:15262380-15262399 | MS.gene68976:intron | 40.0% | |
| CTATCAAATGCAAGTGACTC+AGG | + | chr8.1:15261245-15261264 | None:intergenic | 40.0% | |
| CTTGCATTTGATAGAAACGG+TGG | - | chr8.1:15261251-15261270 | MS.gene68976:CDS | 40.0% | |
| GAAGACCAGATAACATCAAG+AGG | - | chr8.1:15262525-15262544 | MS.gene68976:intron | 40.0% | |
| GAAGGTAAAGTAGAACATCC+TGG | + | chr8.1:15262608-15262627 | None:intergenic | 40.0% | |
| GAGTACAATGGAACACTCTA+TGG | - | chr8.1:15262716-15262735 | MS.gene68976:CDS | 40.0% | |
| GCAATATGTGGAAGACCTTT+AGG | - | chr8.1:15261697-15261716 | MS.gene68976:intron | 40.0% | |
| GGATGTTCTACTTTACCTTC+AGG | - | chr8.1:15262608-15262627 | MS.gene68976:CDS | 40.0% | |
| GGGAATGCAACTCAATTAGT+TGG | - | chr8.1:15261799-15261818 | MS.gene68976:intron | 40.0% | |
| GTGTCTCTTGTTGAAGAGTA+TGG | - | chr8.1:15262668-15262687 | MS.gene68976:CDS | 40.0% | |
| TACAATGGAACACTCTATGG+TGG | - | chr8.1:15262719-15262738 | MS.gene68976:CDS | 40.0% | |
| TCAGTAGTCCAAGCAATATG+TGG | - | chr8.1:15261685-15261704 | MS.gene68976:intron | 40.0% | |
| TCATTCACTCTAACACCTGA+AGG | + | chr8.1:15262626-15262645 | None:intergenic | 40.0% | |
| TTACAGAGATTTCCAGACAG+TGG | - | chr8.1:15262280-15262299 | MS.gene68976:intron | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr8.1:15262704-15262723 | MS.gene68976:CDS | 40.0% |
| ! | CTTGATGTTATCTGGTCTTC+CGG | + | chr8.1:15262525-15262544 | None:intergenic | 40.0% |
| ! | TAGCAACACTGTTGTTTGGT+TGG | + | chr8.1:15262360-15262379 | None:intergenic | 40.0% |
| !! | ATGTGGAAGACCTTTAGGAT+TGG | - | chr8.1:15261702-15261721 | MS.gene68976:intron | 40.0% |
| !! | TGTGGAAGACCTTTAGGATT+GGG | - | chr8.1:15261703-15261722 | MS.gene68976:intron | 40.0% |
| AGGAATAGGACAGTCTGTGA+TGG | - | chr8.1:15261649-15261668 | MS.gene68976:intron | 45.0% | |
| AGGTTGCATAAGAAGCAAGC+AGG | + | chr8.1:15262748-15262767 | None:intergenic | 45.0% | |
| AGTAATACGGCTACCGATGA+TGG | + | chr8.1:15261188-15261207 | None:intergenic | 45.0% | |
| AGTGGCAGTGGAGATAATTC+AGG | - | chr8.1:15262308-15262327 | MS.gene68976:intron | 45.0% | |
| ATGCTTACACTTCTCCCAAC+AGG | - | chr8.1:15261345-15261364 | MS.gene68976:CDS | 45.0% | |
| ATTCAGCGAGTGTGGTTGAA+AGG | - | chr8.1:15262461-15262480 | MS.gene68976:intron | 45.0% | |
| CAAACAGAATTCAGCGAGTG+TGG | - | chr8.1:15262453-15262472 | MS.gene68976:intron | 45.0% | |
| CGGATCTACATCCAAACCAT+CGG | + | chr8.1:15261854-15261873 | None:intergenic | 45.0% | |
| GCATTTGATAGAAACGGTGG+AGG | - | chr8.1:15261254-15261273 | MS.gene68976:CDS | 45.0% | |
| GCGCACCTCAATATCTTACA+TGG | - | chr8.1:15262149-15262168 | MS.gene68976:CDS | 45.0% | |
| GGTTGCATAAGAAGCAAGCA+GGG | + | chr8.1:15262747-15262766 | None:intergenic | 45.0% | |
| GTAGAACATCCTGGAGATCT+TGG | + | chr8.1:15262599-15262618 | None:intergenic | 45.0% | |
| TCTACTGCGTTCTCCATCAT+CGG | - | chr8.1:15261172-15261191 | MS.gene68976:CDS | 45.0% | |
| TGAGTTGCATTCCCACCATT+GGG | + | chr8.1:15261793-15261812 | None:intergenic | 45.0% | |
| ! | ACTGTTGTTTGGTTGGTGCT+TGG | + | chr8.1:15262353-15262372 | None:intergenic | 45.0% |
| ! | CGATGGTTTGGATGTAGATC+CGG | - | chr8.1:15261852-15261871 | MS.gene68976:intron | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | - | chr8.1:15262546-15262565 | MS.gene68976:CDS | 45.0% |
| ! | TGAAGAGTATGGTCCTGAAG+CGG | - | chr8.1:15262679-15262698 | MS.gene68976:CDS | 45.0% |
| ! | TTGAGTTGCATTCCCACCAT+TGG | + | chr8.1:15261794-15261813 | None:intergenic | 45.0% |
| GAGTTGCATTCCCACCATTG+GGG | + | chr8.1:15261792-15261811 | None:intergenic | 50.0% | |
| GGACTACTGAGAAGTCAGCA+AGG | + | chr8.1:15261675-15261694 | None:intergenic | 50.0% | |
| GGAGTGGCAGTAAGCAAAGA+TGG | - | chr8.1:15262401-15262420 | MS.gene68976:intron | 50.0% | |
| TCTTACAGTGCCATCTGGAG+TGG | - | chr8.1:15262385-15262404 | MS.gene68976:intron | 50.0% | |
| TTAGGGACACCAAGATCTCC+AGG | - | chr8.1:15262587-15262606 | MS.gene68976:CDS | 50.0% | |
| TTCCAGACAGTGGTAGCTAG+TGG | - | chr8.1:15262290-15262309 | MS.gene68976:intron | 50.0% | |
| TTGCTTACTGCCACTCCAGA+TGG | + | chr8.1:15262398-15262417 | None:intergenic | 50.0% | |
| TTGGATGTAGATCCGGACAC+TGG | - | chr8.1:15261859-15261878 | MS.gene68976:intron | 50.0% | |
| ! | CTTGTTAAGGTTGGCCCCAA+TGG | - | chr8.1:15261775-15261794 | MS.gene68976:intron | 50.0% |
| ! | GACAGTGACAACCATCGACT+TGG | + | chr8.1:15261135-15261154 | None:intergenic | 50.0% |
| ! | TTAAGGTTGGCCCCAATGGT+GGG | - | chr8.1:15261779-15261798 | MS.gene68976:intron | 50.0% |
| ACAGTGGTAGCTAGTGGCAG+TGG | - | chr8.1:15262296-15262315 | MS.gene68976:intron | 55.0% | |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr8.1:15261233-15261252 | None:intergenic | 55.0% | |
| TGAACCTCACTAGCCGCTTC+AGG | + | chr8.1:15262695-15262714 | None:intergenic | 55.0% | |
| TGCCACTAGCTACCACTGTC+TGG | + | chr8.1:15262295-15262314 | None:intergenic | 55.0% | |
| ! | GTTAAGGTTGGCCCCAATGG+TGG | - | chr8.1:15261778-15261797 | MS.gene68976:intron | 55.0% |
| CAGCTACCAGCACCAGTGAC+AGG | - | chr8.1:15261218-15261237 | MS.gene68976:CDS | 60.0% | |
| TCAGGTCCTGTCACTGGTGC+TGG | + | chr8.1:15261227-15261246 | None:intergenic | 60.0% | |
| TGGTCCTGAAGCGGCTAGTG+AGG | - | chr8.1:15262688-15262707 | MS.gene68976:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15261128 | 15262781 | 15261128 | ID=MS.gene68976 |
| chr8.1 | mRNA | 15261128 | 15262781 | 15261128 | ID=MS.gene68976.t1;Parent=MS.gene68976 |
| chr8.1 | exon | 15262543 | 15262781 | 15262543 | ID=MS.gene68976.t1.exon1;Parent=MS.gene68976.t1 |
| chr8.1 | CDS | 15262543 | 15262781 | 15262543 | ID=cds.MS.gene68976.t1;Parent=MS.gene68976.t1 |
| chr8.1 | exon | 15261986 | 15262258 | 15261986 | ID=MS.gene68976.t1.exon2;Parent=MS.gene68976.t1 |
| chr8.1 | CDS | 15261986 | 15262258 | 15261986 | ID=cds.MS.gene68976.t1;Parent=MS.gene68976.t1 |
| chr8.1 | exon | 15261128 | 15261623 | 15261128 | ID=MS.gene68976.t1.exon3;Parent=MS.gene68976.t1 |
| chr8.1 | CDS | 15261128 | 15261623 | 15261128 | ID=cds.MS.gene68976.t1;Parent=MS.gene68976.t1 |
| Gene Sequence |
| Protein sequence |
