AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78183

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78183.t1 MTR_2g058450 97.024 336 10 0 1 336 1 336 0.0 663
MS.gene78183.t1 MTR_4g112670 54.030 335 147 4 4 334 3 334 6.93e-119 346
MS.gene78183.t1 MTR_2g058410 78.448 232 48 2 104 334 1 231 2.43e-118 341
MS.gene78183.t1 MTR_4g112650 52.994 334 152 3 1 332 1 331 2.72e-115 337
MS.gene78183.t1 MTR_4g112630 51.632 337 147 4 1 334 1 324 2.65e-108 319
MS.gene78183.t1 MTR_4g112620 46.084 332 140 4 3 334 7 299 1.40e-91 276
MS.gene78183.t1 MTR_7g490330 43.322 307 154 6 31 336 38 325 9.68e-74 231
MS.gene78183.t1 MTR_7g490350 41.615 322 158 6 40 336 53 369 1.69e-72 229
MS.gene78183.t1 MTR_7g090300 42.105 323 157 7 39 336 52 369 8.96e-70 222
MS.gene78183.t1 MTR_5g091980 42.997 307 154 4 30 336 38 323 5.64e-69 218
MS.gene78183.t1 MTR_7g090320 37.812 320 166 4 40 326 58 377 1.42e-68 219
MS.gene78183.t1 MTR_7g090310 37.304 319 168 4 40 326 58 376 1.12e-67 217
MS.gene78183.t1 MTR_4g050190 38.485 330 166 9 38 336 68 391 2.79e-65 211
MS.gene78183.t1 MTR_2g087780 36.471 340 180 8 28 336 61 395 3.73e-63 206
MS.gene78183.t1 MTR_0003s0530 54.144 181 81 1 149 327 2 182 1.20e-60 193
MS.gene78183.t1 MTR_2g099030 34.421 337 189 6 28 334 70 404 2.61e-55 186
MS.gene78183.t1 MTR_2g058430 80.000 85 16 1 93 177 50 133 1.18e-38 138
MS.gene78183.t1 MTR_8g074210 32.766 235 133 4 40 274 78 287 2.04e-32 124
MS.gene78183.t1 MTR_4g112840 54.167 96 44 0 175 270 56 151 1.56e-31 116
MS.gene78183.t1 MTR_8g074270 32.319 263 150 6 38 300 76 310 5.65e-31 120
MS.gene78183.t1 MTR_8g074170 33.333 237 133 5 38 274 76 287 1.50e-29 116
MS.gene78183.t1 MTR_2g042430 31.855 248 140 7 113 336 126 368 3.90e-23 99.0
MS.gene78183.t1 MTR_2g042370 33.962 159 99 5 113 269 114 268 5.04e-19 87.0
MS.gene78183.t1 MTR_2g042420 32.704 159 100 5 113 269 107 260 1.13e-17 83.2
MS.gene78183.t1 MTR_8g074320 36.923 130 78 3 98 225 92 219 1.51e-17 80.5
MS.gene78183.t1 MTR_1g075865 37.838 111 68 1 149 258 1 111 3.21e-17 77.4
MS.gene78183.t1 MTR_5g077620 48.235 85 41 1 7 91 4 85 6.07e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78183.t1 AT1G74000 42.071 309 170 5 29 336 29 329 1.43e-79 246
MS.gene78183.t1 AT1G74020 42.444 311 166 6 29 336 27 327 7.72e-78 242
MS.gene78183.t1 AT1G74010 42.122 311 166 7 29 336 26 325 2.30e-73 230
MS.gene78183.t1 AT3G57030 40.635 315 155 6 39 326 55 364 5.41e-69 220
MS.gene78183.t1 AT5G22020 40.061 327 164 7 38 336 73 395 5.37e-67 216
MS.gene78183.t1 AT5G22020 40.061 327 164 7 38 336 73 395 5.37e-67 216
MS.gene78183.t1 AT5G22020 40.061 327 164 7 38 336 73 395 5.37e-67 216
MS.gene78183.t1 AT2G41290 37.168 339 176 9 31 336 42 376 1.55e-60 198
MS.gene78183.t1 AT3G57010 41.152 243 136 2 28 270 42 277 2.66e-59 195
MS.gene78183.t1 AT1G08470 35.976 328 176 9 38 336 67 389 7.59e-58 192
MS.gene78183.t1 AT3G57020 39.241 237 137 3 34 270 47 276 2.84e-57 190
MS.gene78183.t1 AT2G41300 36.634 303 159 5 50 326 88 383 4.23e-54 182
MS.gene78183.t1 AT3G59530 33.758 314 187 8 40 334 84 395 3.41e-51 175
MS.gene78183.t1 AT3G59530 33.758 314 187 8 40 334 84 395 3.41e-51 175
MS.gene78183.t1 AT3G59530 33.758 314 187 8 40 334 84 395 3.41e-51 175
MS.gene78183.t1 AT3G57020 36.709 237 129 2 34 270 47 262 4.90e-51 173
MS.gene78183.t1 AT3G51430 31.224 237 131 9 38 269 67 276 3.84e-24 101
MS.gene78183.t1 AT3G51430 31.224 237 131 9 38 269 67 276 4.43e-24 101
MS.gene78183.t1 AT3G51440 29.915 234 138 9 38 269 67 276 3.38e-23 99.4
MS.gene78183.t1 AT3G51420 29.958 237 134 9 38 269 67 276 1.05e-22 97.8
MS.gene78183.t1 AT3G51450 27.586 232 140 7 41 269 70 276 7.32e-22 95.5

Find 87 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAGCTGATGCTTATTA+TGG 0.133630 2.3:+35960200 MS.gene78183:CDS
TCCTTAGCATTTAACTCTAT+TGG 0.228333 2.3:+35959274 MS.gene78183:CDS
GGAACTCGATGAACGAGTTT+TGG 0.245358 2.3:+35961167 MS.gene78183:CDS
GAGTTAAATGCTAAGGATTC+AGG 0.260581 2.3:-35959268 None:intergenic
AATCTAGAAGGAAACCCTTT+TGG 0.273984 2.3:+35960275 MS.gene78183:CDS
TGTCCTTGTTAGCGAGTATA+AGG 0.290711 2.3:+35961051 MS.gene78183:CDS
TAGGCCTCCCACATGTTTCT+TGG 0.297657 2.3:-35960142 None:intergenic
CTAACAGAATCCGGAGATTC+TGG 0.310441 2.3:+35961074 MS.gene78183:CDS
GATATATTCTTGCGCCTTCC+TGG 0.316455 2.3:+35961124 MS.gene78183:CDS
CTGATGTTATCTGGTCTTCC+AGG 0.317283 2.3:-35961142 None:intergenic
TACAATGTGTAATGGCATTT+CGG 0.337550 2.3:+35960106 MS.gene78183:CDS
ATATAGCTGATGCTTATTAT+GGG 0.363334 2.3:+35960201 MS.gene78183:CDS
GAGTTCCTTCTGATGTTATC+TGG 0.369443 2.3:-35961151 None:intergenic
AGCAATCTAACTGAGGCATC+TGG 0.397285 2.3:+35961001 MS.gene78183:CDS
TATCTTCCATCACCACTAAC+AGG 0.409455 2.3:+35959244 MS.gene78183:CDS
GCAACATAGCTGTTATCATT+GGG 0.411954 2.3:+35959155 MS.gene78183:CDS
CCATCAGAAACACCAGTATA+AGG 0.422560 2.3:-35959304 None:intergenic
CTTAGTCCTAGAGGCAATAC+AGG 0.430139 2.3:-35961235 None:intergenic
TAGATGATGAATAGAGTATG+AGG 0.431468 2.3:-35959189 None:intergenic
TCTGTCAAGTAATCTGCAAT+AGG 0.433858 2.3:-35959218 None:intergenic
CACTGGAATCGTTTATTTCA+CGG 0.437282 2.3:+35960328 MS.gene78183:CDS
ATCCGGAGATTCTGGTTAAC+GGG 0.439072 2.3:+35961082 MS.gene78183:CDS
ATTGGTGAAGGACCTTATAC+TGG 0.445888 2.3:+35959292 MS.gene78183:CDS
AGAAACATGTGGGAGGCCTA+TGG 0.451046 2.3:+35960145 MS.gene78183:CDS
ATATCTGAAGTATAAGCATT+AGG 0.451505 2.3:-35961106 None:intergenic
AAGGATTCAGGGCCTGTTAG+TGG 0.458899 2.3:-35959256 None:intergenic
GCCTCCCACATGTTTCTTGG+AGG 0.461979 2.3:-35960139 None:intergenic
CTAGCTCACATTACAAGATC+AGG 0.462343 2.3:+35960354 MS.gene78183:CDS
AGCAACATAGCTGTTATCAT+TGG 0.463860 2.3:+35959154 MS.gene78183:CDS
TCAGGGCCTGTTAGTGGTGA+TGG 0.471569 2.3:-35959250 None:intergenic
GCAATCTAACTGAGGCATCT+GGG 0.473635 2.3:+35961002 MS.gene78183:CDS
AATGTAGTTTCATTCGTTGA+AGG 0.474932 2.3:-35960971 None:intergenic
ACCAATAGAGTTAAATGCTA+AGG 0.475636 2.3:-35959275 None:intergenic
CCTTATACTGGTGTTTCTGA+TGG 0.479041 2.3:+35959304 MS.gene78183:CDS
AGTATAAGGCTAACAGAATC+CGG 0.480710 2.3:+35961065 MS.gene78183:CDS
GAAACATGTGGGAGGCCTAT+GGG 0.483364 2.3:+35960146 MS.gene78183:CDS
GTCCCGTTAACCAGAATCTC+CGG 0.492891 2.3:-35961084 None:intergenic
AATCCGGAGATTCTGGTTAA+CGG 0.495677 2.3:+35961081 MS.gene78183:CDS
AGTTAAATGCTAAGGATTCA+GGG 0.502876 2.3:-35959267 None:intergenic
GTTGCAGCACCTCCGTCATA+AGG 0.504348 2.3:-35960236 None:intergenic
AGAGGCAATACAGGAGGTAC+TGG 0.506539 2.3:-35961226 None:intergenic
TTGAGTTTCGACTACAACAC+AGG 0.517330 2.3:+35960170 MS.gene78183:CDS
CTTGTTGCTAATAATCTAGA+AGG 0.521330 2.3:+35960263 MS.gene78183:CDS
ACACCAGCAAGAAACCCAAA+AGG 0.523810 2.3:-35960290 None:intergenic
TTGCACACATTTCACCAGAC+AGG 0.531724 2.3:+35959371 MS.gene78183:CDS
AGATTAGACACATACCTGTC+TGG 0.532416 2.3:-35959385 None:intergenic
GCATTTAACTCTATTGGTGA+AGG 0.540843 2.3:+35959280 MS.gene78183:CDS
TGCTTATTATGGGCTTGTGA+AGG 0.543243 2.3:+35960211 MS.gene78183:CDS
ACTACGGAGAAAAGATCATA+CGG 0.548207 2.3:+35960928 MS.gene78183:CDS
AAATAAACGATTCCAGTGCT+AGG 0.556209 2.3:-35960323 None:intergenic
GTACTAAACGCCTCAACAAG+AGG 0.560831 2.3:-35961292 None:intergenic
CTTGTGAAGGTTCCTTATGA+CGG 0.562939 2.3:+35960224 MS.gene78183:CDS
GTACCTCCTGTATTGCCTCT+AGG 0.564887 2.3:+35961229 MS.gene78183:CDS
AGGGACAATACAATGTGTAA+TGG 0.571321 2.3:+35960098 MS.gene78183:intron
GGTGGTGGTGAGGACGCAAA+AGG 0.573294 2.3:-35961205 None:intergenic
AGATGATGAATAGAGTATGA+GGG 0.576051 2.3:-35959188 None:intergenic
TGTTATCTGGTCTTCCAGGA+AGG 0.581662 2.3:-35961138 None:intergenic
CACCAGCAAGAAACCCAAAA+GGG 0.589802 2.3:-35960289 None:intergenic
TAGTCGAAACTCAACCCCAT+AGG 0.590652 2.3:-35960161 None:intergenic
TCAGACCTCCAAGAAACATG+TGG 0.591065 2.3:+35960134 MS.gene78183:CDS
CAATCTAACTGAGGCATCTG+GGG 0.591212 2.3:+35961003 MS.gene78183:CDS
AATACAGGAGGTACTGGTGG+TGG 0.595158 2.3:-35961220 None:intergenic
AAACATGTGGGAGGCCTATG+GGG 0.604258 2.3:+35960147 MS.gene78183:CDS
GGGATCTCCAGAAACTACTA+CGG 0.607994 2.3:+35960912 MS.gene78183:intron
AGAGTCTGTGCCTCTTGTTG+AGG 0.612871 2.3:+35961282 MS.gene78183:CDS
CAGTGAAGTTCAAGAATCCG+AGG 0.615872 2.3:+35961324 MS.gene78183:CDS
GAAGACCAGATAACATCAGA+AGG 0.618915 2.3:+35961146 MS.gene78183:CDS
GTGAAATGTGTGCAAACTCA+AGG 0.621379 2.3:-35959363 None:intergenic
GTGGATGTAGATCCTAGCAC+TGG 0.623093 2.3:+35960311 MS.gene78183:CDS
AGGAGGTACTGGTGGTGGTG+AGG 0.623213 2.3:-35961215 None:intergenic
GGACTAAGAGTCAATGCGGA+AGG 0.626124 2.3:+35961250 MS.gene78183:CDS
TAGCCTTATACTCGCTAACA+AGG 0.631951 2.3:-35961054 None:intergenic
TGAGTTTCGACTACAACACA+GGG 0.637847 2.3:+35960171 MS.gene78183:CDS
GCATTGACTCTTAGTCCTAG+AGG 0.638246 2.3:-35961244 None:intergenic
GTGAAGGTTCCTTATGACGG+AGG 0.638655 2.3:+35960227 MS.gene78183:CDS
CAACATAGCTGTTATCATTG+GGG 0.639744 2.3:+35959156 MS.gene78183:CDS
AGTGAAGTTCAAGAATCCGA+GGG 0.641761 2.3:+35961325 MS.gene78183:CDS
GGGGTAGCAGTTAGCAACGA+TGG 0.645245 2.3:+35961022 MS.gene78183:CDS
CTACGGAGAAAAGATCATAC+GGG 0.645618 2.3:+35960929 MS.gene78183:CDS
GGCAATACAGGAGGTACTGG+TGG 0.650197 2.3:-35961223 None:intergenic
TGTAGCATAGAGTCTTCCCT+CGG 0.651979 2.3:-35961341 None:intergenic
CAGACCTCCAAGAAACATGT+GGG 0.674688 2.3:+35960135 MS.gene78183:CDS
ACCTCCAAGAAACATGTGGG+AGG 0.685654 2.3:+35960138 MS.gene78183:CDS
AGTCCTAGAGGCAATACAGG+AGG 0.688689 2.3:-35961232 None:intergenic
GTTGCTCAGCAATCTAACTG+AGG 0.711728 2.3:+35960994 MS.gene78183:CDS
TCTAGGACTAAGAGTCAATG+CGG 0.760927 2.3:+35961246 MS.gene78183:CDS
GAGTTTCGACTACAACACAG+GGG 0.803781 2.3:+35960172 MS.gene78183:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAGTTTATAATAGAA+TGG + chr2.3:35959441-35959460 MS.gene78183:intron 10.0%
!!! TTTTGTTTCTTAAAAAAAAA+AGG - chr2.3:35959556-35959575 None:intergenic 10.0%
!! AAAAATACACTTATAGTATA+AGG + chr2.3:35959905-35959924 MS.gene78183:intron 15.0%
!! AAAATACACTTATAGTATAA+GGG + chr2.3:35959906-35959925 MS.gene78183:intron 15.0%
!! AACTATATAATAGTAGTAAT+AGG - chr2.3:35959431-35959450 None:intergenic 15.0%
!! ATATCCAAATTTATTGTTTA+AGG + chr2.3:35959514-35959533 MS.gene78183:intron 15.0%
!! TATCCAAATTTATTGTTTAA+GGG + chr2.3:35959515-35959534 MS.gene78183:intron 15.0%
!! AACAAATATCAAAAAGATGA+TGG + chr2.3:35960736-35960755 MS.gene78183:intron 20.0%
!! ATACCCTTAAACAATAAATT+TGG - chr2.3:35959521-35959540 None:intergenic 20.0%
!! GCAATAAAATAACTTTAGTA+AGG - chr2.3:35960784-35960803 None:intergenic 20.0%
!!! ATAAGTGTATTTTTCCAAAT+AGG - chr2.3:35959899-35959918 None:intergenic 20.0%
!!! TAAGTGTATTTTTCCAAATA+GGG - chr2.3:35959898-35959917 None:intergenic 20.0%
!!! TATTTGTTGAACTTTTTAGT+CGG - chr2.3:35960724-35960743 None:intergenic 20.0%
!!! TCTTTTCATATAACTAAAGT+TGG + chr2.3:35960046-35960065 MS.gene78183:intron 20.0%
!!! TTCAGCATAAATAACTTTTT+AGG + chr2.3:35960537-35960556 MS.gene78183:intron 20.0%
! ATATAGCTGATGCTTATTAT+GGG + chr2.3:35960201-35960220 MS.gene78183:CDS 25.0%
! ATCGTAGTTCAAAATATTGT+CGG - chr2.3:35959474-35959493 None:intergenic 25.0%
! GTGTAGTTCAATTATAATTG+TGG + chr2.3:35960874-35960893 MS.gene78183:intron 25.0%
! TATATAGCTGATGCTTATTA+TGG + chr2.3:35960200-35960219 MS.gene78183:CDS 25.0%
!! AATGTTGCATTATTGATTGA+TGG + chr2.3:35960804-35960823 MS.gene78183:intron 25.0%
!! ATATCTGAAGTATAAGCATT+AGG - chr2.3:35961109-35961128 None:intergenic 25.0%
!!! GTCTATGTTCTTAGTTTTAT+AGG - chr2.3:35959630-35959649 None:intergenic 25.0%
AACTGCAGTTCAAAATATTG+TGG - chr2.3:35959940-35959959 None:intergenic 30.0%
AATGTAGTTTCATTCGTTGA+AGG - chr2.3:35960974-35960993 None:intergenic 30.0%
AATTGAGTGGAGAATATCAT+AGG - chr2.3:35960563-35960582 None:intergenic 30.0%
ACCAATAGAGTTAAATGCTA+AGG - chr2.3:35959278-35959297 None:intergenic 30.0%
ACTGCAGTTCAAAATATTGT+GGG - chr2.3:35959939-35959958 None:intergenic 30.0%
AGATGATGAATAGAGTATGA+GGG - chr2.3:35959191-35959210 None:intergenic 30.0%
AGGTTAAATCAAGACATTGT+TGG + chr2.3:35960072-35960091 MS.gene78183:intron 30.0%
AGTTAAATGCTAAGGATTCA+GGG - chr2.3:35959270-35959289 None:intergenic 30.0%
ATCTACTATCTACTCGTAAA+AGG + chr2.3:35959788-35959807 MS.gene78183:intron 30.0%
ATTCTATGGAATGTATCTCT+AGG - chr2.3:35959770-35959789 None:intergenic 30.0%
CATACAACAGAAATCACAAA+AGG + chr2.3:35959688-35959707 MS.gene78183:intron 30.0%
CTTGTTGCTAATAATCTAGA+AGG + chr2.3:35960263-35960282 MS.gene78183:CDS 30.0%
GAGTACTAATTGTAGAGAAT+AGG + chr2.3:35960628-35960647 MS.gene78183:intron 30.0%
TACAATGTGTAATGGCATTT+CGG + chr2.3:35960106-35960125 MS.gene78183:CDS 30.0%
TAGATGATGAATAGAGTATG+AGG - chr2.3:35959192-35959211 None:intergenic 30.0%
TCCTTAGCATTTAACTCTAT+TGG + chr2.3:35959274-35959293 MS.gene78183:CDS 30.0%
TCTACTATCTACTCGTAAAA+GGG + chr2.3:35959789-35959808 MS.gene78183:intron 30.0%
TTGTTGTATCTCAATTTGCA+TGG + chr2.3:35960474-35960493 MS.gene78183:intron 30.0%
! CATATAACTAAAGTTGGTTG+AGG + chr2.3:35960052-35960071 MS.gene78183:intron 30.0%
!!! CACACTAGTTTTCAATATTG+AGG - chr2.3:35960500-35960519 None:intergenic 30.0%
AAATAAACGATTCCAGTGCT+AGG - chr2.3:35960326-35960345 None:intergenic 35.0%
AAGGGACAAGCTACAAATTT+AGG + chr2.3:35959807-35959826 MS.gene78183:intron 35.0%
AATCAAGACATTGTTGGTAC+AGG + chr2.3:35960078-35960097 MS.gene78183:intron 35.0%
ACACTTATAGTATAAGGGTC+TGG + chr2.3:35959911-35959930 MS.gene78183:intron 35.0%
ACTACGGAGAAAAGATCATA+CGG + chr2.3:35960928-35960947 MS.gene78183:CDS 35.0%
AGAGGTTTGGAAATGGTTTA+TGG - chr2.3:35959838-35959857 None:intergenic 35.0%
AGCAACATAGCTGTTATCAT+TGG + chr2.3:35959154-35959173 MS.gene78183:CDS 35.0%
AGGGACAATACAATGTGTAA+TGG + chr2.3:35960098-35960117 MS.gene78183:intron 35.0%
AGTACAGCTCATATGCTAAA+AGG - chr2.3:35960699-35960718 None:intergenic 35.0%
AGTATAAGGCTAACAGAATC+CGG + chr2.3:35961065-35961084 MS.gene78183:CDS 35.0%
AGTGTCACATATCAAGTTAG+AGG - chr2.3:35959856-35959875 None:intergenic 35.0%
ATATCTGAACGTAGATCCTA+TGG + chr2.3:35959963-35959982 MS.gene78183:intron 35.0%
ATCAAGACATTGTTGGTACA+GGG + chr2.3:35960079-35960098 MS.gene78183:intron 35.0%
ATCATGTAGACAGAGTAGAA+TGG - chr2.3:35960384-35960403 None:intergenic 35.0%
ATGTAGCGACTAAAATTGAG+TGG - chr2.3:35960576-35960595 None:intergenic 35.0%
CAACATAGCTGTTATCATTG+GGG + chr2.3:35959156-35959175 MS.gene78183:CDS 35.0%
CACATATCAAGTTAGAGGTT+TGG - chr2.3:35959851-35959870 None:intergenic 35.0%
CACTGGAATCGTTTATTTCA+CGG + chr2.3:35960328-35960347 MS.gene78183:CDS 35.0%
CGAGTAGATAGTAGATTCTA+TGG - chr2.3:35959784-35959803 None:intergenic 35.0%
CTGCAGTTCAAAATATTGTG+GGG - chr2.3:35959938-35959957 None:intergenic 35.0%
GAGTTAAATGCTAAGGATTC+AGG - chr2.3:35959271-35959290 None:intergenic 35.0%
GCAACATAGCTGTTATCATT+GGG + chr2.3:35959155-35959174 MS.gene78183:CDS 35.0%
GCATTTAACTCTATTGGTGA+AGG + chr2.3:35959280-35959299 MS.gene78183:CDS 35.0%
TCAAGTTAGAGGTTTGGAAA+TGG - chr2.3:35959845-35959864 None:intergenic 35.0%
TCTGTCAAGTAATCTGCAAT+AGG - chr2.3:35959221-35959240 None:intergenic 35.0%
TGAGATAATTTGATATGCCC+AGG - chr2.3:35960675-35960694 None:intergenic 35.0%
TGTGGAACCAAATATTTGCA+GGG + chr2.3:35960892-35960911 MS.gene78183:intron 35.0%
TTGTGGAACCAAATATTTGC+AGG + chr2.3:35960891-35960910 MS.gene78183:intron 35.0%
! AATCTAGAAGGAAACCCTTT+TGG + chr2.3:35960275-35960294 MS.gene78183:CDS 35.0%
! ATCTAGAAGGAAACCCTTTT+GGG + chr2.3:35960276-35960295 MS.gene78183:CDS 35.0%
! GCATTATTGATTGATGGTAG+TGG + chr2.3:35960810-35960829 MS.gene78183:intron 35.0%
! GTATCTCTAGGAATCATTAG+CGG - chr2.3:35959758-35959777 None:intergenic 35.0%
!!! TTCCATGTGATTTTAGCTGT+GGG + chr2.3:35960406-35960425 MS.gene78183:intron 35.0%
!!! TTTCCATGTGATTTTAGCTG+TGG + chr2.3:35960405-35960424 MS.gene78183:intron 35.0%
AAATAGGGTGAGTGATTGTG+GGG - chr2.3:35959883-35959902 None:intergenic 40.0%
AGATTAGACACATACCTGTC+TGG - chr2.3:35959388-35959407 None:intergenic 40.0%
AGTGAAGTTCAAGAATCCGA+GGG + chr2.3:35961325-35961344 MS.gene78183:CDS 40.0%
ATTGGTGAAGGACCTTATAC+TGG + chr2.3:35959292-35959311 MS.gene78183:CDS 40.0%
CAAATAGGGTGAGTGATTGT+GGG - chr2.3:35959884-35959903 None:intergenic 40.0%
CCATCAGAAACACCAGTATA+AGG - chr2.3:35959307-35959326 None:intergenic 40.0%
CTACGGAGAAAAGATCATAC+GGG + chr2.3:35960929-35960948 MS.gene78183:CDS 40.0%
CTAGCTCACATTACAAGATC+AGG + chr2.3:35960354-35960373 MS.gene78183:CDS 40.0%
CTTGTGAAGGTTCCTTATGA+CGG + chr2.3:35960224-35960243 MS.gene78183:CDS 40.0%
GAAGACCAGATAACATCAGA+AGG + chr2.3:35961146-35961165 MS.gene78183:CDS 40.0%
GAGTTCCTTCTGATGTTATC+TGG - chr2.3:35961154-35961173 None:intergenic 40.0%
GTGAAATGTGTGCAAACTCA+AGG - chr2.3:35959366-35959385 None:intergenic 40.0%
TAATTTGATATGCCCAGGTG+TGG - chr2.3:35960670-35960689 None:intergenic 40.0%
TATCTTCCATCACCACTAAC+AGG + chr2.3:35959244-35959263 MS.gene78183:CDS 40.0%
TGAGTTTCGACTACAACACA+GGG + chr2.3:35960171-35960190 MS.gene78183:CDS 40.0%
TGCTTATTATGGGCTTGTGA+AGG + chr2.3:35960211-35960230 MS.gene78183:CDS 40.0%
TGGAGATCCCTGCAAATATT+TGG - chr2.3:35960902-35960921 None:intergenic 40.0%
TGTCCTTGTTAGCGAGTATA+AGG + chr2.3:35961051-35961070 MS.gene78183:CDS 40.0%
TTCCCACAGCTAAAATCACA+TGG - chr2.3:35960411-35960430 None:intergenic 40.0%
TTGAGTTTCGACTACAACAC+AGG + chr2.3:35960170-35960189 MS.gene78183:CDS 40.0%
! AATCCGGAGATTCTGGTTAA+CGG + chr2.3:35961081-35961100 MS.gene78183:CDS 40.0%
! CCTTATACTGGTGTTTCTGA+TGG + chr2.3:35959304-35959323 MS.gene78183:CDS 40.0%
! CTTTTCTCCGTAGTAGTTTC+TGG - chr2.3:35960922-35960941 None:intergenic 40.0%
! GAACTCGATGAACGAGTTTT+GGG + chr2.3:35961168-35961187 MS.gene78183:CDS 40.0%
! TCTAGGACTAAGAGTCAATG+CGG + chr2.3:35961246-35961265 MS.gene78183:CDS 40.0%
!! TAGCCTTATACTCGCTAACA+AGG - chr2.3:35961057-35961076 None:intergenic 40.0%
!!! GTGATTTTAGCTGTGGGAAA+TGG + chr2.3:35960412-35960431 MS.gene78183:intron 40.0%
ACACCAGCAAGAAACCCAAA+AGG - chr2.3:35960293-35960312 None:intergenic 45.0%
CACCAGCAAGAAACCCAAAA+GGG - chr2.3:35960292-35960311 None:intergenic 45.0%
CAGACCTCCAAGAAACATGT+GGG + chr2.3:35960135-35960154 MS.gene78183:CDS 45.0%
CAGTGAAGTTCAAGAATCCG+AGG + chr2.3:35961324-35961343 MS.gene78183:CDS 45.0%
CCAAATAGGGTGAGTGATTG+TGG - chr2.3:35959885-35959904 None:intergenic 45.0%
CCACAATCACTCACCCTATT+TGG + chr2.3:35959882-35959901 MS.gene78183:intron 45.0%
CTAACAGAATCCGGAGATTC+TGG + chr2.3:35961074-35961093 MS.gene78183:CDS 45.0%
CTTAGTCCTAGAGGCAATAC+AGG - chr2.3:35961238-35961257 None:intergenic 45.0%
GAGTTTCGACTACAACACAG+GGG + chr2.3:35960172-35960191 MS.gene78183:CDS 45.0%
GATATATTCTTGCGCCTTCC+TGG + chr2.3:35961124-35961143 MS.gene78183:CDS 45.0%
GGGATCTCCAGAAACTACTA+CGG + chr2.3:35960912-35960931 MS.gene78183:intron 45.0%
GTACTAAACGCCTCAACAAG+AGG - chr2.3:35961295-35961314 None:intergenic 45.0%
GTTGCTCAGCAATCTAACTG+AGG + chr2.3:35960994-35961013 MS.gene78183:CDS 45.0%
TAGTCGAAACTCAACCCCAT+AGG - chr2.3:35960164-35960183 None:intergenic 45.0%
TCAGACCTCCAAGAAACATG+TGG + chr2.3:35960134-35960153 MS.gene78183:CDS 45.0%
TGTAGCATAGAGTCTTCCCT+CGG - chr2.3:35961344-35961363 None:intergenic 45.0%
TTGCACACATTTCACCAGAC+AGG + chr2.3:35959371-35959390 MS.gene78183:CDS 45.0%
! AGCAATCTAACTGAGGCATC+TGG + chr2.3:35961001-35961020 MS.gene78183:CDS 45.0%
! ATCCGGAGATTCTGGTTAAC+GGG + chr2.3:35961082-35961101 MS.gene78183:CDS 45.0%
! CAATCTAACTGAGGCATCTG+GGG + chr2.3:35961003-35961022 MS.gene78183:CDS 45.0%
! CTGATGTTATCTGGTCTTCC+AGG - chr2.3:35961145-35961164 None:intergenic 45.0%
! GCAATCTAACTGAGGCATCT+GGG + chr2.3:35961002-35961021 MS.gene78183:CDS 45.0%
! GGAACTCGATGAACGAGTTT+TGG + chr2.3:35961167-35961186 MS.gene78183:CDS 45.0%
! TGTTATCTGGTCTTCCAGGA+AGG - chr2.3:35961141-35961160 None:intergenic 45.0%
!! GCATTGACTCTTAGTCCTAG+AGG - chr2.3:35961247-35961266 None:intergenic 45.0%
!!! AACCCTTTTGGGTTTCTTGC+TGG + chr2.3:35960287-35960306 MS.gene78183:CDS 45.0%
!!! TTTTGGGTTTCTTGCTGGTG+TGG + chr2.3:35960292-35960311 MS.gene78183:CDS 45.0%
AAACATGTGGGAGGCCTATG+GGG + chr2.3:35960147-35960166 MS.gene78183:CDS 50.0%
AAGGATTCAGGGCCTGTTAG+TGG - chr2.3:35959259-35959278 None:intergenic 50.0%
ACCTCCAAGAAACATGTGGG+AGG + chr2.3:35960138-35960157 MS.gene78183:CDS 50.0%
AGAAACATGTGGGAGGCCTA+TGG + chr2.3:35960145-35960164 MS.gene78183:CDS 50.0%
AGAGTCTGTGCCTCTTGTTG+AGG + chr2.3:35961282-35961301 MS.gene78183:CDS 50.0%
AGTCCTAGAGGCAATACAGG+AGG - chr2.3:35961235-35961254 None:intergenic 50.0%
GAAACATGTGGGAGGCCTAT+GGG + chr2.3:35960146-35960165 MS.gene78183:CDS 50.0%
GGACTAAGAGTCAATGCGGA+AGG + chr2.3:35961250-35961269 MS.gene78183:CDS 50.0%
GTACCTCCTGTATTGCCTCT+AGG + chr2.3:35961229-35961248 MS.gene78183:CDS 50.0%
GTCCCGTTAACCAGAATCTC+CGG - chr2.3:35961087-35961106 None:intergenic 50.0%
GTGAAGGTTCCTTATGACGG+AGG + chr2.3:35960227-35960246 MS.gene78183:CDS 50.0%
GTGGATGTAGATCCTAGCAC+TGG + chr2.3:35960311-35960330 MS.gene78183:CDS 50.0%
TAGGCCTCCCACATGTTTCT+TGG - chr2.3:35960145-35960164 None:intergenic 50.0%
! AGAGGCAATACAGGAGGTAC+TGG - chr2.3:35961229-35961248 None:intergenic 50.0%
!! AATACAGGAGGTACTGGTGG+TGG - chr2.3:35961223-35961242 None:intergenic 50.0%
!!! CTCGATGAACGAGTTTTGGG+TGG + chr2.3:35961171-35961190 MS.gene78183:CDS 50.0%
AAACCACGCGTCTGCTCCAT+AGG - chr2.3:35959982-35960001 None:intergenic 55.0%
GCCTCCCACATGTTTCTTGG+AGG - chr2.3:35960142-35960161 None:intergenic 55.0%
GGGGTAGCAGTTAGCAACGA+TGG + chr2.3:35961022-35961041 MS.gene78183:CDS 55.0%
GTTGCAGCACCTCCGTCATA+AGG - chr2.3:35960239-35960258 None:intergenic 55.0%
TCAGGGCCTGTTAGTGGTGA+TGG - chr2.3:35959253-35959272 None:intergenic 55.0%
TGCGTGTTCGATCCACACCT+GGG + chr2.3:35960655-35960674 MS.gene78183:intron 55.0%
TTGCGTGTTCGATCCACACC+TGG + chr2.3:35960654-35960673 MS.gene78183:intron 55.0%
!! GGCAATACAGGAGGTACTGG+TGG - chr2.3:35961226-35961245 None:intergenic 55.0%
GATCCTATGGAGCAGACGCG+TGG + chr2.3:35959976-35959995 MS.gene78183:intron 60.0%
! GGTGGTGGTGAGGACGCAAA+AGG - chr2.3:35961208-35961227 None:intergenic 60.0%
!! AGGAGGTACTGGTGGTGGTG+AGG - chr2.3:35961218-35961237 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 35959148 35961402 35959148 ID=MS.gene78183
chr2.3 mRNA 35959148 35961402 35959148 ID=MS.gene78183.t1;Parent=MS.gene78183
chr2.3 exon 35959148 35959392 35959148 ID=MS.gene78183.t1.exon1;Parent=MS.gene78183.t1
chr2.3 CDS 35959148 35959392 35959148 ID=cds.MS.gene78183.t1;Parent=MS.gene78183.t1
chr2.3 exon 35960100 35960375 35960100 ID=MS.gene78183.t1.exon2;Parent=MS.gene78183.t1
chr2.3 CDS 35960100 35960375 35960100 ID=cds.MS.gene78183.t1;Parent=MS.gene78183.t1
chr2.3 exon 35960913 35961402 35960913 ID=MS.gene78183.t1.exon3;Parent=MS.gene78183.t1
chr2.3 CDS 35960913 35961402 35960913 ID=cds.MS.gene78183.t1;Parent=MS.gene78183.t1
Gene Sequence

>MS.gene78183

ATGACTAGCAACATAGCTGTTATCATTGGGGTCTTAGTTTCCCTCATACTCTATTCATCATCTATAGTTGCCTATTGCAGATTACTTGACAGACTCTATCTTCCATCACCACTAACAGGCCCTGAATCCTTAGCATTTAACTCTATTGGTGAAGGACCTTATACTGGTGTTTCTGATGGAAGAATTCTTAAATATGATGAAGAATGTTCTTGTTTCCTTGAGTTTGCACACATTTCACCAGACAGGTATGTGTCTAATCTAATGTAATATGTACTAGTTGCCTATTACTACTATTATATAGTTTATAATAGAATGGTTTAACTCCGACAATATTTTGAACTACGATTCGAGTATCTGTCATGAGAGATATCCAAATTTATTGTTTAAGGGTATGTATCATCTAAACCTTTTTTTTTTAAGAAACAAAACTAATATTAAGAGAAAGTATGTGTTTACTGAAAACTTTTTTATTTTCATTTCCTATAAAACTAAGAACATAGACATATATGTTTCGTGAAAACATTTTCTATTTTTAACTCACATACAACAGAAATCACAAAAGGAAAGATATAAGAACAAAATCAGAACTAAAATAGCGACAAACTCGCCGCTAATGATTCCTAGAGATACATTCCATAGAATCTACTATCTACTCGTAAAAGGGACAAGCTACAAATTTAGGTCGATCCATAAACCATTTCCAAACCTCTAACTTGATATGTGACACTATTTCCCCACAATCACTCACCCTATTTGGAAAAATACACTTATAGTATAAGGGTCTGGTCCCCACAATATTTTGAACTGCAGTTCGAATATCTGAACGTAGATCCTATGGAGCAGACGCGTGGTTTCACTTTAAAATATATATATATATATATATTTTCTTTTTTTTTTTTCTTTTCATATAACTAAAGTTGGTTGAGGTTAAATCAAGACATTGTTGGTACAGGGACAATACAATGTGTAATGGCATTTCGGACTTCTCAGACCTCCAAGAAACATGTGGGAGGCCTATGGGGTTGAGTTTCGACTACAACACAGGGGAATTATATATAGCTGATGCTTATTATGGGCTTGTGAAGGTTCCTTATGACGGAGGTGCTGCAACACAACTTGTTGCTAATAATCTAGAAGGAAACCCTTTTGGGTTTCTTGCTGGTGTGGATGTAGATCCTAGCACTGGAATCGTTTATTTCACGGAAGCTAGCTCACATTACAAGATCAGGTAATCCATTCTACTCTGTCTACATGATTTTTCCATGTGATTTTAGCTGTGGGAAATGGACAATGTGAATGAGCTTGTAAACTTTCTATACATATTGTTTGTTGTATCTCAATTTGCATGGCCTCAATATTGAAAACTAGTGTGTAATCATGATCTAGAAATTCAGCATAAATAACTTTTTAGGCCTATGATATTCTCCACTCAATTTTAGTCGCTACATAAAATTTCATCGACTTTTTATTTTGTTTTAATGAGTACTAATTGTAGAGAATAGGATATTGCGTGTTCGATCCACACCTGGGCATATCAAATTATCTCAACCTTTTAGCATATGAGCTGTACTTACCGACTAAAAAGTTCAACAAATATCAAAAAGATGATGGTGAAAATAAGAGTTGATAAAATCCTTACTAAAGTTATTTTATTGCAATGTTGCATTATTGATTGATGGTAGTGGATTCACACAATAATTGTTCATTGTATCGCATGTTCTATCAAGTGTAGTTCAATTATAATTGTGGAACCAAATATTTGCAGGGATCTCCAGAAACTACTACGGAGAAAAGATCATACGGGAAGCTTATTCAGATACGATCCTTCAACGAATGAAACTACATTGTTGCTCAGCAATCTAACTGAGGCATCTGGGGTAGCAGTTAGCAACGATGGTTCATTTGTCCTTGTTAGCGAGTATAAGGCTAACAGAATCCGGAGATTCTGGTTAACGGGACCTAATGCTTATACTTCAGATATATTCTTGCGCCTTCCTGGAAGACCAGATAACATCAGAAGGAACTCGATGAACGAGTTTTGGGTGGCAGTGAATTATCCTTTTGCGTCCTCACCACCACCAGTACCTCCTGTATTGCCTCTAGGACTAAGAGTCAATGCGGAAGGTTTAATTATAGAGTCTGTGCCTCTTGTTGAGGCGTTTAGTACTGAATCAGTCAGTGAAGTTCAAGAATCCGAGGGAAGACTCTATGCTACATCGTTGAGTGATAACTATGCTAGCATCCTCAAGCTCTAG
Protein sequence

>MS.gene78183.t1

MTSNIAVIIGVLVSLILYSSSIVAYCRLLDRLYLPSPLTGPESLAFNSIGEGPYTGVSDGRILKYDEECSCFLEFAHISPDRDNTMCNGISDFSDLQETCGRPMGLSFDYNTGELYIADAYYGLVKVPYDGGAATQLVANNLEGNPFGFLAGVDVDPSTGIVYFTEASSHYKIRDLQKLLRRKDHTGSLFRYDPSTNETTLLLSNLTEASGVAVSNDGSFVLVSEYKANRIRRFWLTGPNAYTSDIFLRLPGRPDNIRRNSMNEFWVAVNYPFASSPPPVPPVLPLGLRVNAEGLIIESVPLVEAFSTESVSEVQESEGRLYATSLSDNYASILKL