Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044501.t1 | RHN63780.1 | 96.4 | 334 | 12 | 0 | 1 | 334 | 14 | 347 | 1.30E-181 | 645.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044501.t1 | P94111 | 43.3 | 326 | 169 | 7 | 11 | 330 | 7 | 322 | 8.7e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044501.t1 | G7JT37 | 96.4 | 334 | 12 | 0 | 1 | 334 | 1 | 334 | 9.3e-182 | 645.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78183 | MS.gene044501 | PPI |
| MS.gene044490 | MS.gene044501 | PPI |
| MS.gene68977 | MS.gene044501 | PPI |
| MS.gene050115 | MS.gene044501 | PPI |
| MS.gene83236 | MS.gene044501 | PPI |
| MS.gene044501 | MS.gene063529 | PPI |
| MS.gene033013 | MS.gene044501 | PPI |
| MS.gene044501 | MS.gene35843 | PPI |
| MS.gene34908 | MS.gene044501 | PPI |
| MS.gene044501 | MS.gene68976 | PPI |
| MS.gene023327 | MS.gene044501 | PPI |
| MS.gene044501 | MS.gene033012 | PPI |
| MS.gene08297 | MS.gene044501 | PPI |
| MS.gene044500 | MS.gene044501 | PPI |
| MS.gene044502 | MS.gene044501 | PPI |
| MS.gene83238 | MS.gene044501 | PPI |
| MS.gene025506 | MS.gene044501 | PPI |
| MS.gene033015 | MS.gene044501 | PPI |
| MS.gene08295 | MS.gene044501 | PPI |
| MS.gene045791 | MS.gene044501 | PPI |
| MS.gene023328 | MS.gene044501 | PPI |
| MS.gene68976 | MS.gene044501 | PPI |
| MS.gene78185 | MS.gene044501 | PPI |
| MS.gene033026 | MS.gene044501 | PPI |
| MS.gene045793 | MS.gene044501 | PPI |
| MS.gene033012 | MS.gene044501 | PPI |
| MS.gene038810 | MS.gene044501 | PPI |
| MS.gene044501 | MS.gene038798 | PPI |
| MS.gene044501 | MS.gene68975 | PPI |
| MS.gene038798 | MS.gene044501 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044501.t1 | MTR_4g112650 | 96.407 | 334 | 12 | 0 | 1 | 334 | 1 | 334 | 0.0 | 657 |
| MS.gene044501.t1 | MTR_4g112630 | 80.357 | 336 | 55 | 2 | 1 | 335 | 1 | 326 | 0.0 | 536 |
| MS.gene044501.t1 | MTR_4g112670 | 78.806 | 335 | 67 | 2 | 1 | 333 | 2 | 334 | 0.0 | 529 |
| MS.gene044501.t1 | MTR_4g112620 | 74.474 | 333 | 46 | 3 | 2 | 334 | 7 | 300 | 1.63e-173 | 483 |
| MS.gene044501.t1 | MTR_2g058450 | 54.397 | 307 | 137 | 2 | 26 | 331 | 28 | 332 | 5.65e-109 | 321 |
| MS.gene044501.t1 | MTR_0003s0530 | 76.503 | 183 | 39 | 2 | 145 | 325 | 1 | 181 | 6.26e-96 | 283 |
| MS.gene044501.t1 | MTR_7g490330 | 41.284 | 327 | 166 | 5 | 9 | 329 | 13 | 319 | 1.47e-77 | 241 |
| MS.gene044501.t1 | MTR_2g058410 | 52.790 | 233 | 109 | 1 | 102 | 334 | 1 | 232 | 4.97e-74 | 228 |
| MS.gene044501.t1 | MTR_7g490350 | 36.134 | 357 | 191 | 5 | 5 | 329 | 12 | 363 | 1.10e-72 | 229 |
| MS.gene044501.t1 | MTR_7g090300 | 36.757 | 370 | 186 | 8 | 1 | 329 | 1 | 363 | 6.15e-69 | 220 |
| MS.gene044501.t1 | MTR_2g087780 | 38.710 | 341 | 170 | 8 | 25 | 333 | 60 | 393 | 1.02e-66 | 215 |
| MS.gene044501.t1 | MTR_5g091980 | 40.614 | 293 | 152 | 4 | 37 | 329 | 47 | 317 | 1.20e-66 | 213 |
| MS.gene044501.t1 | MTR_7g090320 | 37.941 | 340 | 175 | 8 | 28 | 333 | 48 | 385 | 9.12e-66 | 213 |
| MS.gene044501.t1 | MTR_4g050190 | 38.906 | 329 | 163 | 8 | 36 | 333 | 68 | 389 | 1.60e-64 | 209 |
| MS.gene044501.t1 | MTR_7g090310 | 36.778 | 329 | 173 | 7 | 38 | 333 | 58 | 384 | 3.29e-60 | 198 |
| MS.gene044501.t1 | MTR_2g099030 | 32.840 | 338 | 194 | 4 | 26 | 333 | 70 | 404 | 4.67e-59 | 195 |
| MS.gene044501.t1 | MTR_4g112840 | 77.451 | 102 | 21 | 1 | 172 | 273 | 56 | 155 | 2.11e-48 | 160 |
| MS.gene044501.t1 | MTR_5g077620 | 73.810 | 84 | 19 | 3 | 4 | 87 | 2 | 82 | 4.51e-32 | 117 |
| MS.gene044501.t1 | MTR_8g074210 | 34.043 | 235 | 129 | 5 | 36 | 270 | 76 | 284 | 5.39e-29 | 115 |
| MS.gene044501.t1 | MTR_8g074270 | 33.047 | 233 | 130 | 5 | 38 | 270 | 78 | 284 | 2.78e-27 | 110 |
| MS.gene044501.t1 | MTR_8g074170 | 33.047 | 233 | 130 | 5 | 38 | 270 | 78 | 284 | 3.87e-27 | 110 |
| MS.gene044501.t1 | MTR_2g058430 | 48.077 | 104 | 45 | 1 | 75 | 178 | 43 | 137 | 2.18e-22 | 95.1 |
| MS.gene044501.t1 | MTR_2g042430 | 30.736 | 231 | 131 | 8 | 39 | 268 | 77 | 279 | 3.30e-22 | 96.3 |
| MS.gene044501.t1 | MTR_2g042370 | 33.758 | 157 | 99 | 4 | 113 | 268 | 116 | 268 | 6.57e-20 | 89.7 |
| MS.gene044501.t1 | MTR_2g042420 | 25.472 | 318 | 186 | 13 | 39 | 333 | 58 | 347 | 1.43e-19 | 88.6 |
| MS.gene044501.t1 | MTR_1g075865 | 39.815 | 108 | 62 | 2 | 150 | 257 | 7 | 111 | 6.37e-17 | 76.6 |
| MS.gene044501.t1 | MTR_8g074320 | 33.333 | 168 | 100 | 6 | 63 | 224 | 58 | 219 | 7.51e-16 | 75.9 |
| MS.gene044501.t1 | MTR_5g093640 | 40.816 | 98 | 12 | 2 | 238 | 335 | 52 | 103 | 1.33e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044501.t1 | AT1G74020 | 44.444 | 306 | 158 | 6 | 27 | 330 | 27 | 322 | 9.47e-75 | 234 |
| MS.gene044501.t1 | AT1G74010 | 43.607 | 305 | 161 | 7 | 27 | 330 | 26 | 320 | 1.05e-70 | 223 |
| MS.gene044501.t1 | AT1G74000 | 41.967 | 305 | 167 | 6 | 27 | 330 | 29 | 324 | 1.95e-69 | 220 |
| MS.gene044501.t1 | AT3G57030 | 39.185 | 319 | 163 | 4 | 37 | 329 | 55 | 368 | 2.52e-69 | 221 |
| MS.gene044501.t1 | AT1G08470 | 40.248 | 323 | 158 | 8 | 36 | 329 | 67 | 383 | 9.35e-69 | 220 |
| MS.gene044501.t1 | AT3G57010 | 42.683 | 246 | 133 | 3 | 25 | 270 | 41 | 278 | 6.71e-66 | 212 |
| MS.gene044501.t1 | AT5G22020 | 38.720 | 328 | 164 | 10 | 36 | 333 | 73 | 393 | 3.66e-64 | 208 |
| MS.gene044501.t1 | AT5G22020 | 38.720 | 328 | 164 | 10 | 36 | 333 | 73 | 393 | 3.66e-64 | 208 |
| MS.gene044501.t1 | AT5G22020 | 38.720 | 328 | 164 | 10 | 36 | 333 | 73 | 393 | 3.66e-64 | 208 |
| MS.gene044501.t1 | AT3G57020 | 41.057 | 246 | 137 | 2 | 25 | 270 | 40 | 277 | 4.65e-62 | 202 |
| MS.gene044501.t1 | AT2G41290 | 38.838 | 327 | 160 | 11 | 38 | 330 | 51 | 371 | 7.58e-59 | 194 |
| MS.gene044501.t1 | AT3G57020 | 39.024 | 246 | 128 | 2 | 25 | 270 | 40 | 263 | 3.24e-57 | 189 |
| MS.gene044501.t1 | AT2G41300 | 34.516 | 310 | 169 | 5 | 43 | 326 | 83 | 384 | 1.06e-55 | 186 |
| MS.gene044501.t1 | AT3G59530 | 37.247 | 247 | 147 | 3 | 29 | 270 | 75 | 318 | 1.19e-53 | 181 |
| MS.gene044501.t1 | AT3G59530 | 37.247 | 247 | 147 | 3 | 29 | 270 | 75 | 318 | 1.19e-53 | 181 |
| MS.gene044501.t1 | AT3G59530 | 37.247 | 247 | 147 | 3 | 29 | 270 | 75 | 318 | 1.19e-53 | 181 |
| MS.gene044501.t1 | AT3G51440 | 28.897 | 263 | 155 | 8 | 16 | 270 | 40 | 278 | 1.34e-22 | 97.4 |
| MS.gene044501.t1 | AT3G51420 | 27.378 | 347 | 192 | 15 | 16 | 331 | 40 | 357 | 1.13e-21 | 94.7 |
| MS.gene044501.t1 | AT3G51430 | 32.948 | 173 | 108 | 5 | 99 | 270 | 113 | 278 | 3.28e-19 | 87.8 |
| MS.gene044501.t1 | AT3G51430 | 32.370 | 173 | 109 | 5 | 99 | 270 | 113 | 278 | 5.58e-19 | 87.0 |
| MS.gene044501.t1 | AT3G51450 | 28.814 | 236 | 137 | 8 | 39 | 270 | 70 | 278 | 3.32e-18 | 85.1 |
Find 84 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCAGGAGGCCAATTT+TGG | 0.196374 | 8.1:-15512117 | MS.gene044501:CDS |
| TATGTAGCTGATGCTTATTT+TGG | 0.237520 | 8.1:-15512909 | MS.gene044501:CDS |
| TACTAACTGATATCCAAAAT+TGG | 0.256590 | 8.1:+15512104 | None:intergenic |
| GAATTCCTCTTGATGTTATC+TGG | 0.291665 | 8.1:+15512133 | None:intergenic |
| GCAATATGTGGAAGACCTTT+AGG | 0.300362 | 8.1:-15512963 | MS.gene044501:CDS |
| GATAACATCAAGAGGAATTC+AGG | 0.341738 | 8.1:-15512130 | MS.gene044501:CDS |
| AAATATGTTGGTTCAAATGA+AGG | 0.369592 | 8.1:-15513349 | MS.gene044501:CDS |
| CTTGATGTTATCTGGTCTTC+CGG | 0.376966 | 8.1:+15512141 | None:intergenic |
| ATCGGCAAACATAGTTGAAT+TGG | 0.376978 | 8.1:+15512827 | None:intergenic |
| AACTATGTTTGCCGATGGTT+TGG | 0.379978 | 8.1:-15512820 | MS.gene044501:CDS |
| TGAGTTGCATTCCCACCATT+GGG | 0.382610 | 8.1:+15512870 | None:intergenic |
| GAATTATTCATGCTACTTGC+CGG | 0.383828 | 8.1:-15512160 | MS.gene044501:CDS |
| TGAACCTCACTAGCCGCTTC+AGG | 0.389938 | 8.1:+15511971 | None:intergenic |
| AGTGGCAGTGGAGATAATTC+AGG | 0.393936 | 8.1:-15512355 | MS.gene044501:CDS |
| GTGTCTCTTGTTGAAGAGTA+TGG | 0.394726 | 8.1:-15511995 | MS.gene044501:CDS |
| TTCTTAGCAACACTGTTGTT+TGG | 0.400149 | 8.1:+15512302 | None:intergenic |
| GGATGTTCTACTTTACCTTC+AGG | 0.402383 | 8.1:-15512055 | MS.gene044501:CDS |
| TGTGGAAGACCTTTAGGATT+GGG | 0.405892 | 8.1:-15512957 | MS.gene044501:CDS |
| GGTGTTAGAGTGAATGAAAA+TGG | 0.407349 | 8.1:-15512034 | MS.gene044501:CDS |
| TGCTTGGATCATATCTCAAT+AGG | 0.426890 | 8.1:+15512329 | None:intergenic |
| TTGAGTTGCATTCCCACCAT+TGG | 0.429082 | 8.1:+15512869 | None:intergenic |
| GTAGAACATCCTGGAGATCT+TGG | 0.431021 | 8.1:+15512067 | None:intergenic |
| GATTTATATATTTACCTGTT+GGG | 0.432026 | 8.1:+15513301 | None:intergenic |
| GAGTACAATGGAACACTCTA+TGG | 0.432828 | 8.1:-15511947 | MS.gene044501:CDS |
| ACTGTTGTTTGGTTGGTGCT+TGG | 0.443361 | 8.1:+15512313 | None:intergenic |
| TGCCACTAGCTACCACTGTC+TGG | 0.447384 | 8.1:+15512371 | None:intergenic |
| CGATGGTTTGGATGTAGATC+CGG | 0.453120 | 8.1:-15512808 | MS.gene044501:CDS |
| TGGTTCAAATGAAGGTTTCA+AGG | 0.454128 | 8.1:-15513341 | MS.gene044501:CDS |
| TCAGGTCCTGTCACTGGTGC+TGG | 0.455170 | 8.1:+15513436 | None:intergenic |
| CTGAAGCTTGTTCAGTAATA+CGG | 0.466301 | 8.1:+15513462 | None:intergenic |
| AGAAATCTTACAGTGCCATC+TGG | 0.470622 | 8.1:-15512283 | MS.gene044501:CDS |
| CTTGTTAAGGTTGGCCCCAA+TGG | 0.472047 | 8.1:-15512885 | MS.gene044501:CDS |
| AGTAATACGGCTACCGATGA+TGG | 0.472632 | 8.1:+15513475 | None:intergenic |
| AAGGTCTTCCACATATTGCT+TGG | 0.472662 | 8.1:+15512967 | None:intergenic |
| TTAGGGACACCAAGATCTCC+AGG | 0.481801 | 8.1:-15512076 | MS.gene044501:CDS |
| ATGCTTACACTTCTCCCAAC+AGG | 0.489728 | 8.1:-15513315 | MS.gene044501:intron |
| GTTAAGGTTGGCCCCAATGG+TGG | 0.492288 | 8.1:-15512882 | MS.gene044501:CDS |
| ATGTGGAAGACCTTTAGGAT+TGG | 0.494905 | 8.1:-15512958 | MS.gene044501:CDS |
| TAGCAACACTGTTGTTTGGT+TGG | 0.501427 | 8.1:+15512306 | None:intergenic |
| AAATAAACGACTCCAGTGTC+CGG | 0.502679 | 8.1:+15512789 | None:intergenic |
| GGGAATGCAACTCAATTAGT+TGG | 0.502687 | 8.1:-15512861 | MS.gene044501:CDS |
| AGTGACTCAGGTCCTGTCAC+TGG | 0.505698 | 8.1:+15513430 | None:intergenic |
| ACAGTGGTAGCTAGTGGCAG+TGG | 0.510345 | 8.1:-15512367 | MS.gene044501:CDS |
| TCATTCACTCTAACACCTGA+AGG | 0.522134 | 8.1:+15512040 | None:intergenic |
| GGAGTGGCAGTAAGCAAAGA+TGG | 0.525475 | 8.1:-15512262 | MS.gene044501:CDS |
| CTATCAAATGCAAGTGACTC+AGG | 0.525659 | 8.1:+15513418 | None:intergenic |
| CCATCAGAAGAAGTAACATA+AGG | 0.525792 | 8.1:+15513382 | None:intergenic |
| TCTACTGCGTTCTCCATCAT+CGG | 0.525948 | 8.1:-15513488 | MS.gene044501:CDS |
| CCTTATGTTACTTCTTCTGA+TGG | 0.527626 | 8.1:-15513382 | MS.gene044501:CDS |
| GACAGTGACAACCATCGACT+TGG | 0.528736 | 8.1:+15513528 | None:intergenic |
| TCACTTGCATTTGATAGAAA+CGG | 0.530670 | 8.1:-15513412 | MS.gene044501:CDS |
| AGGTTGCATAAGAAGCAAGC+AGG | 0.532375 | 8.1:+15511918 | None:intergenic |
| ATTCAGCGAGTGTGGTTGAA+AGG | 0.546046 | 8.1:-15512202 | MS.gene044501:CDS |
| TCAGTAGTCCAAGCAATATG+TGG | 0.548585 | 8.1:-15512975 | MS.gene044501:CDS |
| AATTCTGATGAATTTGCTCT+CGG | 0.549648 | 8.1:+15512178 | None:intergenic |
| CAGCTACCAGCACCAGTGAC+AGG | 0.551193 | 8.1:-15513442 | MS.gene044501:CDS |
| TTGCTTACTGCCACTCCAGA+TGG | 0.551639 | 8.1:+15512268 | None:intergenic |
| GAAGGTAAAGTAGAACATCC+TGG | 0.568828 | 8.1:+15512058 | None:intergenic |
| AATTCAACTATGTTTGCCGA+TGG | 0.570302 | 8.1:-15512825 | MS.gene044501:CDS |
| CAAACAGAATTCAGCGAGTG+TGG | 0.570481 | 8.1:-15512210 | MS.gene044501:CDS |
| TAATACCATGTCCAAGTCGA+TGG | 0.572475 | 8.1:-15513539 | None:intergenic |
| TTAAGGTTGGCCCCAATGGT+GGG | 0.574022 | 8.1:-15512881 | MS.gene044501:CDS |
| TTGGATGTAGATCCGGACAC+TGG | 0.580301 | 8.1:-15512801 | MS.gene044501:CDS |
| TGATTGAAACCCAATCCTAA+AGG | 0.582627 | 8.1:+15512948 | None:intergenic |
| TGGTCCTGAAGCGGCTAGTG+AGG | 0.589941 | 8.1:-15511975 | MS.gene044501:CDS |
| ATAGTTGAATTGGCTTGTGT+CGG | 0.596354 | 8.1:+15512837 | None:intergenic |
| GGTTGCATAAGAAGCAAGCA+GGG | 0.600341 | 8.1:+15511919 | None:intergenic |
| CTTGTAATTAGAGCTAGCTA+TGG | 0.601850 | 8.1:+15512764 | None:intergenic |
| AAAACTCTAGGGAGTAAATG+AGG | 0.602595 | 8.1:+15511898 | None:intergenic |
| TCTTACAGTGCCATCTGGAG+TGG | 0.604508 | 8.1:-15512278 | MS.gene044501:CDS |
| CGGATCTACATCCAAACCAT+CGG | 0.609491 | 8.1:+15512809 | None:intergenic |
| TTCCAGACAGTGGTAGCTAG+TGG | 0.612500 | 8.1:-15512373 | MS.gene044501:CDS |
| GACAACCATCGACTTGGACA+TGG | 0.613511 | 8.1:+15513534 | None:intergenic |
| GCATTTGATAGAAACGGTGG+AGG | 0.636595 | 8.1:-15513406 | MS.gene044501:CDS |
| AGGAATAGGACAGTCTGTGA+TGG | 0.636740 | 8.1:-15513011 | MS.gene044501:CDS |
| GAGTTGCATTCCCACCATTG+GGG | 0.641897 | 8.1:+15512871 | None:intergenic |
| CTTGCATTTGATAGAAACGG+TGG | 0.644459 | 8.1:-15513409 | MS.gene044501:CDS |
| GAAGACCAGATAACATCAAG+AGG | 0.646688 | 8.1:-15512138 | MS.gene044501:CDS |
| TACAATGGAACACTCTATGG+TGG | 0.656288 | 8.1:-15511944 | MS.gene044501:CDS |
| TTACAGAGATTTCCAGACAG+TGG | 0.662090 | 8.1:-15512383 | MS.gene044501:intron |
| AGTGAGGTTCAAGAGTACAA+TGG | 0.673039 | 8.1:-15511959 | MS.gene044501:CDS |
| TGAAGAGTATGGTCCTGAAG+CGG | 0.674281 | 8.1:-15511984 | MS.gene044501:CDS |
| GGACTACTGAGAAGTCAGCA+AGG | 0.682750 | 8.1:+15512988 | None:intergenic |
| AACATCAAGAGGAATTCAGG+AGG | 0.698815 | 8.1:-15512127 | MS.gene044501:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATTATATTATTGTTTA+TGG | - | chr8.1:15513002-15513021 | MS.gene044501:CDS | 10.0% |
| !!! | ATGACTGTTTTTTATTTTTT+TGG | - | chr8.1:15512399-15512418 | MS.gene044501:intron | 15.0% |
| !! | AAGCAAAAATAGAAAATAAC+AGG | + | chr8.1:15512958-15512977 | None:intergenic | 20.0% |
| !! | GATTTATATATTTACCTGTT+GGG | + | chr8.1:15512138-15512157 | None:intergenic | 20.0% |
| !! | TGATTTATATATTTACCTGT+TGG | + | chr8.1:15512139-15512158 | None:intergenic | 20.0% |
| !!! | ATATCAGTTAGTAGTTTTTT+AGG | - | chr8.1:15513342-15513361 | MS.gene044501:CDS | 20.0% |
| !!! | GATATTTTATGAGAAGAAAT+GGG | + | chr8.1:15512756-15512775 | None:intergenic | 20.0% |
| !!! | GTTTTTTATTTTTTTGGTTC+AGG | - | chr8.1:15512405-15512424 | MS.gene044501:intron | 20.0% |
| !!! | TATCAGTTAGTAGTTTTTTA+GGG | - | chr8.1:15513343-15513362 | MS.gene044501:CDS | 20.0% |
| !!! | TGATATTTTATGAGAAGAAA+TGG | + | chr8.1:15512757-15512776 | None:intergenic | 20.0% |
| ! | TACTAACTGATATCCAAAAT+TGG | + | chr8.1:15513335-15513354 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTCAAATATGT+TGG | - | chr8.1:15512075-15512094 | MS.gene044501:CDS | 25.0% |
| !!! | AAATATGTTGGTTCAAATGA+AGG | - | chr8.1:15512087-15512106 | MS.gene044501:CDS | 25.0% |
| !!! | TATTTTTTTGGTTCAGGAAT+AGG | - | chr8.1:15512411-15512430 | MS.gene044501:intron | 25.0% |
| TCACTTGCATTTGATAGAAA+CGG | - | chr8.1:15512024-15512043 | MS.gene044501:CDS | 30.0% | |
| TGAATCCTACAAATTATTCG+AGG | + | chr8.1:15512986-15513005 | None:intergenic | 30.0% | |
| ! | AATTCTGATGAATTTGCTCT+CGG | + | chr8.1:15513261-15513280 | None:intergenic | 30.0% |
| ! | AGATGCTTTCTAAAAGAACA+CGG | + | chr8.1:15512267-15512286 | None:intergenic | 30.0% |
| ! | TATGTAGCTGATGCTTATTT+TGG | - | chr8.1:15512527-15512546 | MS.gene044501:intron | 30.0% |
| ! | TCTTTCCTCGAATAATTTGT+AGG | - | chr8.1:15512978-15512997 | MS.gene044501:CDS | 30.0% |
| !!! | TATTTTGGACTTGTTAAGGT+TGG | - | chr8.1:15512542-15512561 | MS.gene044501:intron | 30.0% |
| !!! | TGCTTATTTTGGACTTGTTA+AGG | - | chr8.1:15512538-15512557 | MS.gene044501:intron | 30.0% |
| AACGATCACTTGATTCATGT+TGG | + | chr8.1:15512178-15512197 | None:intergenic | 35.0% | |
| AATTCAACTATGTTTGCCGA+TGG | - | chr8.1:15512611-15512630 | MS.gene044501:intron | 35.0% | |
| ACCTCAATATCTTACATGGA+TGG | - | chr8.1:15512926-15512945 | MS.gene044501:CDS | 35.0% | |
| ACGATCACTTGATTCATGTT+GGG | + | chr8.1:15512177-15512196 | None:intergenic | 35.0% | |
| ATCGGCAAACATAGTTGAAT+TGG | + | chr8.1:15512612-15512631 | None:intergenic | 35.0% | |
| CCATCAGAAGAAGTAACATA+AGG | + | chr8.1:15512057-15512076 | None:intergenic | 35.0% | |
| CTTGTAATTAGAGCTAGCTA+TGG | + | chr8.1:15512675-15512694 | None:intergenic | 35.0% | |
| GAATTCCTCTTGATGTTATC+TGG | + | chr8.1:15513306-15513325 | None:intergenic | 35.0% | |
| GATAACATCAAGAGGAATTC+AGG | - | chr8.1:15513306-15513325 | MS.gene044501:intron | 35.0% | |
| GGTGTTAGAGTGAATGAAAA+TGG | - | chr8.1:15513402-15513421 | MS.gene044501:CDS | 35.0% | |
| TCCATCCATGTAAGATATTG+AGG | + | chr8.1:15512930-15512949 | None:intergenic | 35.0% | |
| TGACAAATGTGAATGTCACT+TGG | - | chr8.1:15513026-15513045 | MS.gene044501:intron | 35.0% | |
| TGATTGAAACCCAATCCTAA+AGG | + | chr8.1:15512491-15512510 | None:intergenic | 35.0% | |
| TGCTTGGATCATATCTCAAT+AGG | + | chr8.1:15513110-15513129 | None:intergenic | 35.0% | |
| TGGTTCAAATGAAGGTTTCA+AGG | - | chr8.1:15512095-15512114 | MS.gene044501:CDS | 35.0% | |
| TTCTTAGCAACACTGTTGTT+TGG | + | chr8.1:15513137-15513156 | None:intergenic | 35.0% | |
| ! | CCTTATGTTACTTCTTCTGA+TGG | - | chr8.1:15512054-15512073 | MS.gene044501:CDS | 35.0% |
| ! | CTGAAGCTTGTTCAGTAATA+CGG | + | chr8.1:15511977-15511996 | None:intergenic | 35.0% |
| ! | GAATTATTCATGCTACTTGC+CGG | - | chr8.1:15513276-15513295 | MS.gene044501:intron | 35.0% |
| !! | ATAGTTGAATTGGCTTGTGT+CGG | + | chr8.1:15512602-15512621 | None:intergenic | 35.0% |
| AAATAAACGACTCCAGTGTC+CGG | + | chr8.1:15512650-15512669 | None:intergenic | 40.0% | |
| AACATCAAGAGGAATTCAGG+AGG | - | chr8.1:15513309-15513328 | MS.gene044501:intron | 40.0% | |
| AACTATGTTTGCCGATGGTT+TGG | - | chr8.1:15512616-15512635 | MS.gene044501:intron | 40.0% | |
| AAGGTCTTCCACATATTGCT+TGG | + | chr8.1:15512472-15512491 | None:intergenic | 40.0% | |
| AGAAATCTTACAGTGCCATC+TGG | - | chr8.1:15513153-15513172 | MS.gene044501:intron | 40.0% | |
| CTATCAAATGCAAGTGACTC+AGG | + | chr8.1:15512021-15512040 | None:intergenic | 40.0% | |
| CTTGCATTTGATAGAAACGG+TGG | - | chr8.1:15512027-15512046 | MS.gene044501:CDS | 40.0% | |
| GAAGACCAGATAACATCAAG+AGG | - | chr8.1:15513298-15513317 | MS.gene044501:intron | 40.0% | |
| GAAGGTAAAGTAGAACATCC+TGG | + | chr8.1:15513381-15513400 | None:intergenic | 40.0% | |
| GAGTACAATGGAACACTCTA+TGG | - | chr8.1:15513489-15513508 | MS.gene044501:CDS | 40.0% | |
| GCAATATGTGGAAGACCTTT+AGG | - | chr8.1:15512473-15512492 | MS.gene044501:intron | 40.0% | |
| GGATGTTCTACTTTACCTTC+AGG | - | chr8.1:15513381-15513400 | MS.gene044501:CDS | 40.0% | |
| GGGAATGCAACTCAATTAGT+TGG | - | chr8.1:15512575-15512594 | MS.gene044501:intron | 40.0% | |
| GTGTCTCTTGTTGAAGAGTA+TGG | - | chr8.1:15513441-15513460 | MS.gene044501:CDS | 40.0% | |
| TACAATGGAACACTCTATGG+TGG | - | chr8.1:15513492-15513511 | MS.gene044501:CDS | 40.0% | |
| TCAGTAGTCCAAGCAATATG+TGG | - | chr8.1:15512461-15512480 | MS.gene044501:intron | 40.0% | |
| TCATTCACTCTAACACCTGA+AGG | + | chr8.1:15513399-15513418 | None:intergenic | 40.0% | |
| TTACAGAGATTTCCAGACAG+TGG | - | chr8.1:15513053-15513072 | MS.gene044501:intron | 40.0% | |
| ! | AGTGAGGTTCAAGAGTACAA+TGG | - | chr8.1:15513477-15513496 | MS.gene044501:CDS | 40.0% |
| ! | CTTGATGTTATCTGGTCTTC+CGG | + | chr8.1:15513298-15513317 | None:intergenic | 40.0% |
| ! | TAGCAACACTGTTGTTTGGT+TGG | + | chr8.1:15513133-15513152 | None:intergenic | 40.0% |
| !! | ATGTGGAAGACCTTTAGGAT+TGG | - | chr8.1:15512478-15512497 | MS.gene044501:intron | 40.0% |
| !! | TGTGGAAGACCTTTAGGATT+GGG | - | chr8.1:15512479-15512498 | MS.gene044501:intron | 40.0% |
| AGGAATAGGACAGTCTGTGA+TGG | - | chr8.1:15512425-15512444 | MS.gene044501:intron | 45.0% | |
| AGGTTGCATAAGAAGCAAGC+AGG | + | chr8.1:15513521-15513540 | None:intergenic | 45.0% | |
| AGTAATACGGCTACCGATGA+TGG | + | chr8.1:15511964-15511983 | None:intergenic | 45.0% | |
| AGTGGCAGTGGAGATAATTC+AGG | - | chr8.1:15513081-15513100 | MS.gene044501:intron | 45.0% | |
| ATGCTTACACTTCTCCCAAC+AGG | - | chr8.1:15512121-15512140 | MS.gene044501:CDS | 45.0% | |
| ATTCAGCGAGTGTGGTTGAA+AGG | - | chr8.1:15513234-15513253 | MS.gene044501:intron | 45.0% | |
| CAAACAGAATTCAGCGAGTG+TGG | - | chr8.1:15513226-15513245 | MS.gene044501:intron | 45.0% | |
| CGGATCTACATCCAAACCAT+CGG | + | chr8.1:15512630-15512649 | None:intergenic | 45.0% | |
| GCATTTGATAGAAACGGTGG+AGG | - | chr8.1:15512030-15512049 | MS.gene044501:CDS | 45.0% | |
| GCGCACCTCAATATCTTACA+TGG | - | chr8.1:15512922-15512941 | MS.gene044501:CDS | 45.0% | |
| GGTTGCATAAGAAGCAAGCA+GGG | + | chr8.1:15513520-15513539 | None:intergenic | 45.0% | |
| GTAGAACATCCTGGAGATCT+TGG | + | chr8.1:15513372-15513391 | None:intergenic | 45.0% | |
| TCTACTGCGTTCTCCATCAT+CGG | - | chr8.1:15511948-15511967 | MS.gene044501:CDS | 45.0% | |
| TGAGTTGCATTCCCACCATT+GGG | + | chr8.1:15512569-15512588 | None:intergenic | 45.0% | |
| ! | ACTGTTGTTTGGTTGGTGCT+TGG | + | chr8.1:15513126-15513145 | None:intergenic | 45.0% |
| ! | CGATGGTTTGGATGTAGATC+CGG | - | chr8.1:15512628-15512647 | MS.gene044501:intron | 45.0% |
| ! | GGAATTCAGGAGGCCAATTT+TGG | - | chr8.1:15513319-15513338 | MS.gene044501:CDS | 45.0% |
| ! | TGAAGAGTATGGTCCTGAAG+CGG | - | chr8.1:15513452-15513471 | MS.gene044501:CDS | 45.0% |
| ! | TTGAGTTGCATTCCCACCAT+TGG | + | chr8.1:15512570-15512589 | None:intergenic | 45.0% |
| GAGTTGCATTCCCACCATTG+GGG | + | chr8.1:15512568-15512587 | None:intergenic | 50.0% | |
| GGACTACTGAGAAGTCAGCA+AGG | + | chr8.1:15512451-15512470 | None:intergenic | 50.0% | |
| GGAGTGGCAGTAAGCAAAGA+TGG | - | chr8.1:15513174-15513193 | MS.gene044501:intron | 50.0% | |
| TCTTACAGTGCCATCTGGAG+TGG | - | chr8.1:15513158-15513177 | MS.gene044501:intron | 50.0% | |
| TTAGGGACACCAAGATCTCC+AGG | - | chr8.1:15513360-15513379 | MS.gene044501:CDS | 50.0% | |
| TTCCAGACAGTGGTAGCTAG+TGG | - | chr8.1:15513063-15513082 | MS.gene044501:intron | 50.0% | |
| TTGCTTACTGCCACTCCAGA+TGG | + | chr8.1:15513171-15513190 | None:intergenic | 50.0% | |
| TTGGATGTAGATCCGGACAC+TGG | - | chr8.1:15512635-15512654 | MS.gene044501:intron | 50.0% | |
| ! | CTTGTTAAGGTTGGCCCCAA+TGG | - | chr8.1:15512551-15512570 | MS.gene044501:intron | 50.0% |
| ! | GACAGTGACAACCATCGACT+TGG | + | chr8.1:15511911-15511930 | None:intergenic | 50.0% |
| ! | TTAAGGTTGGCCCCAATGGT+GGG | - | chr8.1:15512555-15512574 | MS.gene044501:intron | 50.0% |
| ACAGTGGTAGCTAGTGGCAG+TGG | - | chr8.1:15513069-15513088 | MS.gene044501:intron | 55.0% | |
| AGTGACTCAGGTCCTGTCAC+TGG | + | chr8.1:15512009-15512028 | None:intergenic | 55.0% | |
| TGAACCTCACTAGCCGCTTC+AGG | + | chr8.1:15513468-15513487 | None:intergenic | 55.0% | |
| TGCCACTAGCTACCACTGTC+TGG | + | chr8.1:15513068-15513087 | None:intergenic | 55.0% | |
| ! | GTTAAGGTTGGCCCCAATGG+TGG | - | chr8.1:15512554-15512573 | MS.gene044501:intron | 55.0% |
| CAGCTACCAGCACCAGTGAC+AGG | - | chr8.1:15511994-15512013 | MS.gene044501:CDS | 60.0% | |
| TCAGGTCCTGTCACTGGTGC+TGG | + | chr8.1:15512003-15512022 | None:intergenic | 60.0% | |
| TGGTCCTGAAGCGGCTAGTG+AGG | - | chr8.1:15513461-15513480 | MS.gene044501:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15511904 | 15513554 | 15511904 | ID=MS.gene044501 |
| chr8.1 | mRNA | 15511904 | 15513554 | 15511904 | ID=MS.gene044501.t1;Parent=MS.gene044501 |
| chr8.1 | exon | 15513316 | 15513554 | 15513316 | ID=MS.gene044501.t1.exon1;Parent=MS.gene044501.t1 |
| chr8.1 | CDS | 15513316 | 15513554 | 15513316 | ID=cds.MS.gene044501.t1;Parent=MS.gene044501.t1 |
| chr8.1 | exon | 15512759 | 15513031 | 15512759 | ID=MS.gene044501.t1.exon2;Parent=MS.gene044501.t1 |
| chr8.1 | CDS | 15512759 | 15513031 | 15512759 | ID=cds.MS.gene044501.t1;Parent=MS.gene044501.t1 |
| chr8.1 | exon | 15511904 | 15512399 | 15511904 | ID=MS.gene044501.t1.exon3;Parent=MS.gene044501.t1 |
| chr8.1 | CDS | 15511904 | 15512399 | 15511904 | ID=cds.MS.gene044501.t1;Parent=MS.gene044501.t1 |
| Gene Sequence |
| Protein sequence |
