AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34908

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34908.t1 MTR_4g112670 84.431 334 48 3 1 330 1 334 0.0 563
MS.gene34908.t1 MTR_4g112650 77.844 334 70 3 2 331 1 334 0.0 525
MS.gene34908.t1 MTR_4g112630 73.214 336 75 4 2 332 1 326 1.51e-174 487
MS.gene34908.t1 MTR_4g112620 68.750 336 64 4 1 331 1 300 1.06e-160 451
MS.gene34908.t1 MTR_2g058450 54.397 307 139 1 25 330 28 334 9.00e-111 325
MS.gene34908.t1 MTR_0003s0530 82.222 180 30 1 145 322 2 181 6.15e-102 298
MS.gene34908.t1 MTR_7g490330 38.298 329 185 3 4 331 13 324 8.28e-78 241
MS.gene34908.t1 MTR_7g490350 37.931 319 171 2 36 330 52 367 4.65e-76 238
MS.gene34908.t1 MTR_2g058410 53.879 232 106 1 101 331 1 232 4.09e-75 231
MS.gene34908.t1 MTR_5g091980 39.645 338 174 7 2 331 7 322 5.07e-72 226
MS.gene34908.t1 MTR_7g090300 38.006 321 170 4 36 331 52 368 1.22e-71 227
MS.gene34908.t1 MTR_4g050190 37.758 339 174 9 24 330 56 389 2.11e-70 224
MS.gene34908.t1 MTR_2g087780 36.982 338 178 8 24 330 60 393 3.03e-70 224
MS.gene34908.t1 MTR_7g090320 37.500 352 181 8 9 326 35 381 4.08e-69 221
MS.gene34908.t1 MTR_7g090310 38.125 320 165 5 36 322 57 376 3.62e-65 211
MS.gene34908.t1 MTR_2g099030 33.832 334 190 6 25 328 70 402 1.88e-60 199
MS.gene34908.t1 MTR_4g112840 80.000 100 20 0 171 270 56 155 6.86e-53 172
MS.gene34908.t1 MTR_5g077620 86.905 84 11 0 4 87 1 84 6.10e-46 153
MS.gene34908.t1 MTR_5g077620 90.698 43 4 0 276 318 76 118 4.34e-19 82.8
MS.gene34908.t1 MTR_8g074210 33.463 257 141 5 21 271 56 288 1.53e-34 130
MS.gene34908.t1 MTR_8g074270 34.043 235 131 5 37 271 78 288 3.83e-32 123
MS.gene34908.t1 MTR_8g074170 34.061 229 127 5 37 265 78 282 9.22e-32 122
MS.gene34908.t1 MTR_2g042430 31.441 229 130 8 38 265 77 279 9.12e-24 100
MS.gene34908.t1 MTR_2g042420 31.004 229 131 8 38 265 58 260 7.56e-23 97.8
MS.gene34908.t1 MTR_2g042370 34.591 159 101 3 108 265 112 268 3.06e-22 96.3
MS.gene34908.t1 MTR_2g058430 54.118 85 39 0 90 174 50 134 3.13e-21 91.7
MS.gene34908.t1 MTR_8g074320 37.795 127 74 3 98 221 95 219 3.03e-18 82.4
MS.gene34908.t1 MTR_1g075865 37.963 108 66 1 148 254 4 111 2.51e-17 77.8
MS.gene34908.t1 MTR_5g093640 45.918 98 7 2 235 332 52 103 1.26e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34908.t1 AT1G74020 43.042 309 160 7 27 330 28 325 2.04e-75 235
MS.gene34908.t1 AT3G57030 39.564 321 165 4 36 330 55 372 1.95e-74 234
MS.gene34908.t1 AT1G74010 42.295 305 165 6 27 329 27 322 4.22e-73 229
MS.gene34908.t1 AT1G74000 40.391 307 171 5 27 330 30 327 2.08e-71 225
MS.gene34908.t1 AT1G08470 37.048 332 176 7 28 330 60 387 9.19e-70 223
MS.gene34908.t1 AT5G22020 36.310 336 180 8 25 330 62 393 1.09e-68 220
MS.gene34908.t1 AT5G22020 36.310 336 180 8 25 330 62 393 1.09e-68 220
MS.gene34908.t1 AT5G22020 36.310 336 180 8 25 330 62 393 1.09e-68 220
MS.gene34908.t1 AT3G57010 40.984 244 138 2 24 267 41 278 4.40e-67 215
MS.gene34908.t1 AT3G57020 38.525 244 144 1 24 267 40 277 5.48e-62 202
MS.gene34908.t1 AT2G41290 37.003 327 170 8 37 330 51 374 5.29e-61 199
MS.gene34908.t1 AT3G59530 37.751 249 149 3 28 271 75 322 2.66e-57 191
MS.gene34908.t1 AT3G59530 37.751 249 149 3 28 271 75 322 2.66e-57 191
MS.gene34908.t1 AT3G59530 37.751 249 149 3 28 271 75 322 2.66e-57 191
MS.gene34908.t1 AT3G57020 36.475 244 135 1 24 267 40 263 7.18e-57 188
MS.gene34908.t1 AT2G41300 33.117 308 174 5 42 323 83 384 5.86e-55 184
MS.gene34908.t1 AT3G51440 27.698 278 158 8 35 306 67 307 1.43e-26 108
MS.gene34908.t1 AT3G51430 29.870 231 139 6 38 267 70 278 2.20e-24 102
MS.gene34908.t1 AT3G51430 29.437 231 140 6 38 267 70 278 2.89e-24 102
MS.gene34908.t1 AT3G51420 27.157 313 187 11 35 328 67 357 2.44e-23 99.4
MS.gene34908.t1 AT3G51450 29.060 234 137 7 38 267 70 278 3.80e-23 99.0

Find 81 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTCAAGAGGCCAATTT+TGG 0.142569 4.1:+15957365 MS.gene34908:CDS
ATACAAAGAGTTTGGCTTAA+AGG 0.191016 4.1:+15957280 MS.gene34908:CDS
ATTTCAGTGAATAGTTATTT+AGG 0.235492 4.1:+15957388 MS.gene34908:CDS
ATTGGTAACCATGTTGAATA+TGG 0.244460 4.1:+15956156 None:intergenic
GCAAAATGTGGAAGACCTTT+AGG 0.259656 4.1:+15956807 MS.gene34908:CDS
GAATTTCTCTTGATGTTATC+TGG 0.262648 4.1:-15957349 None:intergenic
TGCTTACTTGAGCTGGAAAT+TGG 0.273371 4.1:-15957018 None:intergenic
TATTCACTGAAATCCAAAAT+TGG 0.293830 4.1:-15957378 None:intergenic
ATCAGCAAACTTAGTAGAAT+TGG 0.304645 4.1:-15956943 None:intergenic
CGGGCAAAATCGTCCGTCTT+GGG 0.319086 4.1:-15957423 None:intergenic
AGCTTGGATCATATCTTAAT+AGG 0.319761 4.1:-15957153 None:intergenic
CAAACAGAATACAAAGAGTT+TGG 0.323375 4.1:+15957272 MS.gene34908:CDS
CAAAATGTGGAAGACCTTTA+GGG 0.331794 4.1:+15956808 MS.gene34908:CDS
TACTAAGTTTGCTGATGGTT+TGG 0.332839 4.1:+15956950 MS.gene34908:CDS
GTATCTCTTGGTGCTGAGTA+TGG 0.338967 4.1:+15957487 MS.gene34908:CDS
GATATATTTATTTACCTGTT+TGG 0.346046 4.1:-15956394 None:intergenic
TACGTAGCTGATGCTTATTA+TGG 0.348144 4.1:+15956861 MS.gene34908:CDS
GGCAATCTTGCCGTGCCATC+TGG 0.359780 4.1:+15957199 MS.gene34908:CDS
GAATTATTCATGTTACTTGC+TGG 0.369585 4.1:+15957322 MS.gene34908:CDS
CTCAGTCACTCTGATTCCTC+CGG 0.409015 4.1:-15957443 None:intergenic
TGCTTATTATGGCCTTGTTA+AGG 0.409890 4.1:+15956872 MS.gene34908:CDS
TGAGTTACATTTGCTCCATC+AGG 0.418940 4.1:-15956900 None:intergenic
CCGGGCAAAATCGTCCGTCT+TGG 0.422570 4.1:-15957424 None:intergenic
AATTCTGATGAATTTGCTCT+TGG 0.423029 4.1:-15957304 None:intergenic
AGTGAGATTCAAGAGTATAA+TGG 0.429524 4.1:+15957523 MS.gene34908:CDS
ATAACCAGCGGAGATAATTC+AGG 0.430534 4.1:+15957127 MS.gene34908:CDS
TGCCTAGCAACACCGTCGTT+TGG 0.431318 4.1:-15957180 None:intergenic
ATCGTCCGTCTTGGGGATCC+TGG 0.434461 4.1:-15957415 None:intergenic
ATGCTTTCACTTCGCCAAAC+AGG 0.434792 4.1:+15956380 MS.gene34908:CDS
CTCCGCTGGTTATCAGTGTC+TGG 0.435095 4.1:-15957117 None:intergenic
GAAACTATGCTTACTTGAGC+TGG 0.440498 4.1:-15957025 None:intergenic
AAATATATTGGTCCAGATGA+AGG 0.448616 4.1:+15956346 MS.gene34908:CDS
TATTCCTTGAAACCTTCATC+TGG 0.461685 4.1:-15956358 None:intergenic
CTGGAAATTGGTGCTAGCTT+CGG 0.463996 4.1:-15957006 None:intergenic
CTTGTTAAGGTTAGTCCTGA+TGG 0.465547 4.1:+15956885 MS.gene34908:CDS
TCACTTGCATTTGATAGAAA+TGG 0.471351 4.1:+15956283 MS.gene34908:CDS
GCAAATGTAACTCAATTAGT+TGG 0.471990 4.1:+15956909 MS.gene34908:CDS
TGGTCCAGATGAAGGTTTCA+AGG 0.472200 4.1:+15956354 MS.gene34908:CDS
CCTTATGTTGGCTCCTCTGA+TGG 0.473712 4.1:+15956313 MS.gene34908:CDS
ACCGTCGTTTGGTTTGAGCT+TGG 0.476304 4.1:-15957169 None:intergenic
TACTCTTGAATCTCACTAGC+TGG 0.484772 4.1:-15957517 None:intergenic
GGAATCAGAGTGACTGAGAA+TGG 0.488784 4.1:+15957448 MS.gene34908:CDS
TTAGTAGAATTGGCTTGTGC+AGG 0.492686 4.1:-15956933 None:intergenic
TGCTAGCATAAGAAGCAAGC+AGG 0.502038 4.1:-15957564 None:intergenic
TATAATGGAACGCTCTATAG+TGG 0.504379 4.1:+15957538 MS.gene34908:CDS
CCATCAGAGGAGCCAACATA+AGG 0.508307 4.1:-15956313 None:intergenic
TTGGATGTAGATTCCGACAC+TGG 0.519237 4.1:+15956969 MS.gene34908:CDS
CTATCAAATGCAAGTGACTC+AGG 0.521823 4.1:-15956277 None:intergenic
GCTTCCTGAATTATCTCCGC+TGG 0.522068 4.1:-15957131 None:intergenic
GGGCAAAATCGTCCGTCTTG+GGG 0.530545 4.1:-15957422 None:intergenic
CTTGCATTTGATAGAAATGG+TGG 0.539336 4.1:+15956286 MS.gene34908:CDS
AAAATAAACGATTCCAGTGT+CGG 0.540943 4.1:-15956982 None:intergenic
AGTGACTCAGGACCCGTCAC+TGG 0.541604 4.1:-15956265 None:intergenic
TCAGTCACTCTGATTCCTCC+GGG 0.543329 4.1:-15957442 None:intergenic
AACCAAACGACGGTGTTGCT+AGG 0.548086 4.1:+15957178 MS.gene34908:CDS
GGTGTGGCAGTAAGCAAAGA+TGG 0.552392 4.1:+15957220 MS.gene34908:CDS
TTGCTTACTGCCACACCAGA+TGG 0.555964 4.1:-15957214 None:intergenic
TACTGCCACACCAGATGGCA+CGG 0.561460 4.1:-15957209 None:intergenic
TGATTGAAACTCAACCCTAA+AGG 0.563318 4.1:-15956822 None:intergenic
TTGAGTTTCAATCATCAGAC+GGG 0.566766 4.1:+15956831 MS.gene34908:CDS
AATTCTACTAAGTTTGCTGA+TGG 0.568034 4.1:+15956945 MS.gene34908:CDS
TCAGCTACCATCACCAGTGA+CGG 0.576414 4.1:+15956252 MS.gene34908:CDS
TCAGGACCCGTCACTGGTGA+TGG 0.579014 4.1:-15956259 None:intergenic
GCTAGCATAAGAAGCAAGCA+GGG 0.580108 4.1:-15957563 None:intergenic
AGGAACAAGACAATATGTGA+TGG 0.582363 4.1:+15956759 MS.gene34908:intron
TCTTGCCGTGCCATCTGGTG+TGG 0.588262 4.1:+15957204 MS.gene34908:CDS
GTTGAGTTTCAATCATCAGA+CGG 0.594215 4.1:+15956830 MS.gene34908:CDS
GGAACAAGACAATATGTGAT+GGG 0.595406 4.1:+15956760 MS.gene34908:intron
CAGCTACCATCACCAGTGAC+GGG 0.598096 4.1:+15956253 MS.gene34908:CDS
AATAGTTATTTAGGACCACC+AGG 0.606094 4.1:+15957397 MS.gene34908:CDS
TCAGCAGTCCAAGCAAAATG+TGG 0.607995 4.1:+15956795 MS.gene34908:CDS
AATGGTGGAGGACCTTATGT+TGG 0.609545 4.1:+15956301 MS.gene34908:CDS
GCATTTGATAGAAATGGTGG+AGG 0.613633 4.1:+15956289 MS.gene34908:CDS
AACATCAAGAGAAATTCAAG+AGG 0.624735 4.1:+15957355 MS.gene34908:CDS
CATCAGGACTAACCTTAACA+AGG 0.625058 4.1:-15956884 None:intergenic
GTCCGTCTTGGGGATCCTGG+TGG 0.630185 4.1:-15957412 None:intergenic
GACCACCAGGATCCCCAAGA+CGG 0.653131 4.1:+15957410 MS.gene34908:CDS
AAACATTGCCATATTCAACA+TGG 0.672591 4.1:-15956164 None:intergenic
AGTAAGTAAAATACTCTAGG+GGG 0.687710 4.1:-15957593 None:intergenic
TTCCAGACACTGATAACCAG+CGG 0.693066 4.1:+15957115 MS.gene34908:CDS
TCCAAGCTCAAACCAAACGA+CGG 0.707803 4.1:+15957168 MS.gene34908:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTTTACAAAATAAA+CGG - chr4.1:15956471-15956490 None:intergenic 10.0%
!!! AATGAATTCCTTTTTTATTT+TGG + chr4.1:15956733-15956752 MS.gene34908:intron 15.0%
!!! GGAAGAATTTTTAAATATAT+TGG + chr4.1:15956334-15956353 MS.gene34908:CDS 15.0%
!!! TTTTTTTTTTTTTGTGTGAT+CGG + chr4.1:15956513-15956532 MS.gene34908:intron 15.0%
!! ATGTTTATATAGAAAACACT+GGG + chr4.1:15956638-15956657 MS.gene34908:intron 20.0%
!! ATTTCAGTGAATAGTTATTT+AGG + chr4.1:15957388-15957407 MS.gene34908:CDS 20.0%
!! GATATATTTATTTACCTGTT+TGG - chr4.1:15956397-15956416 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGTGATC+GGG + chr4.1:15956514-15956533 MS.gene34908:intron 20.0%
! AAACATGAAAAGAAGATGAT+AGG - chr4.1:15956624-15956643 None:intergenic 25.0%
! CATGTTTATATAGAAAACAC+TGG + chr4.1:15956637-15956656 MS.gene34908:intron 25.0%
! TATTCACTGAAATCCAAAAT+TGG - chr4.1:15957381-15957400 None:intergenic 25.0%
! TTAGTATTGTAATGCAGAAT+TGG - chr4.1:15957064-15957083 None:intergenic 25.0%
! TTCCTGAACCAAAATAAAAA+AGG - chr4.1:15956744-15956763 None:intergenic 25.0%
! TTTAAAAATTCTTCCATCAG+AGG - chr4.1:15956329-15956348 None:intergenic 25.0%
!! ATTTTACAGATTGTATCTCT+TGG + chr4.1:15957475-15957494 MS.gene34908:CDS 25.0%
!!! TTCCTTTTTTATTTTGGTTC+AGG + chr4.1:15956739-15956758 MS.gene34908:intron 25.0%
AAAATAAACGATTCCAGTGT+CGG - chr4.1:15956985-15957004 None:intergenic 30.0%
AAATATATTGGTCCAGATGA+AGG + chr4.1:15956346-15956365 MS.gene34908:CDS 30.0%
AACATCAAGAGAAATTCAAG+AGG + chr4.1:15957355-15957374 MS.gene34908:CDS 30.0%
AGCTTGGATCATATCTTAAT+AGG - chr4.1:15957156-15957175 None:intergenic 30.0%
ATCAGCAAACTTAGTAGAAT+TGG - chr4.1:15956946-15956965 None:intergenic 30.0%
ATGATAGGCTAAATTTCTTG+AGG - chr4.1:15956609-15956628 None:intergenic 30.0%
CAAACAGAATACAAAGAGTT+TGG + chr4.1:15957272-15957291 MS.gene34908:CDS 30.0%
GAATTTCTCTTGATGTTATC+TGG - chr4.1:15957352-15957371 None:intergenic 30.0%
GCAAATGTAACTCAATTAGT+TGG + chr4.1:15956909-15956928 MS.gene34908:CDS 30.0%
TCACTTGCATTTGATAGAAA+TGG + chr4.1:15956283-15956302 MS.gene34908:CDS 30.0%
TGATAGGCTAAATTTCTTGA+GGG - chr4.1:15956608-15956627 None:intergenic 30.0%
TTTGAATCTAGCTAGCTAAT+AGG - chr4.1:15956428-15956447 None:intergenic 30.0%
! AATTCTGATGAATTTGCTCT+TGG - chr4.1:15957307-15957326 None:intergenic 30.0%
! AGTGAGATTCAAGAGTATAA+TGG + chr4.1:15957523-15957542 MS.gene34908:CDS 30.0%
! ATACAAAGAGTTTGGCTTAA+AGG + chr4.1:15957280-15957299 MS.gene34908:CDS 30.0%
! ATGTCACTTGGTTAATTGTA+GGG + chr4.1:15957090-15957109 MS.gene34908:intron 30.0%
! GAATTATTCATGTTACTTGC+TGG + chr4.1:15957322-15957341 MS.gene34908:CDS 30.0%
!! AATTCTACTAAGTTTGCTGA+TGG + chr4.1:15956945-15956964 MS.gene34908:CDS 30.0%
AGGAACAAGACAATATGTGA+TGG + chr4.1:15956759-15956778 MS.gene34908:intron 35.0%
CAAAATGTGGAAGACCTTTA+GGG + chr4.1:15956808-15956827 MS.gene34908:CDS 35.0%
CTTGCATTTGATAGAAATGG+TGG + chr4.1:15956286-15956305 MS.gene34908:CDS 35.0%
GGAACAAGACAATATGTGAT+GGG + chr4.1:15956760-15956779 MS.gene34908:intron 35.0%
GTTGAGTTTCAATCATCAGA+CGG + chr4.1:15956830-15956849 MS.gene34908:CDS 35.0%
TACGTAGCTGATGCTTATTA+TGG + chr4.1:15956861-15956880 MS.gene34908:CDS 35.0%
TACTAAATGTGCATGTCACT+TGG + chr4.1:15957078-15957097 MS.gene34908:intron 35.0%
TATTCCTTGAAACCTTCATC+TGG - chr4.1:15956361-15956380 None:intergenic 35.0%
TGATTGAAACTCAACCCTAA+AGG - chr4.1:15956825-15956844 None:intergenic 35.0%
TTGAGTTTCAATCATCAGAC+GGG + chr4.1:15956831-15956850 MS.gene34908:CDS 35.0%
! AATAGTTATTTAGGACCACC+AGG + chr4.1:15957397-15957416 MS.gene34908:CDS 35.0%
! CATGTCACTTGGTTAATTGT+AGG + chr4.1:15957089-15957108 MS.gene34908:intron 35.0%
! GAAATTCAAGAGGCCAATTT+TGG + chr4.1:15957365-15957384 MS.gene34908:CDS 35.0%
! TATAATGGAACGCTCTATAG+TGG + chr4.1:15957538-15957557 MS.gene34908:CDS 35.0%
!! TACTAAGTTTGCTGATGGTT+TGG + chr4.1:15956950-15956969 MS.gene34908:CDS 35.0%
!! TGCTTATTATGGCCTTGTTA+AGG + chr4.1:15956872-15956891 MS.gene34908:CDS 35.0%
ATAACCAGCGGAGATAATTC+AGG + chr4.1:15957127-15957146 MS.gene34908:CDS 40.0%
CATCAGGACTAACCTTAACA+AGG - chr4.1:15956887-15956906 None:intergenic 40.0%
CTATCAAATGCAAGTGACTC+AGG - chr4.1:15956280-15956299 None:intergenic 40.0%
GAAACTATGCTTACTTGAGC+TGG - chr4.1:15957028-15957047 None:intergenic 40.0%
GCAAAATGTGGAAGACCTTT+AGG + chr4.1:15956807-15956826 MS.gene34908:CDS 40.0%
GCATTTGATAGAAATGGTGG+AGG + chr4.1:15956289-15956308 MS.gene34908:CDS 40.0%
TACTCTTGAATCTCACTAGC+TGG - chr4.1:15957520-15957539 None:intergenic 40.0%
TGAGTTACATTTGCTCCATC+AGG - chr4.1:15956903-15956922 None:intergenic 40.0%
TGCTTACTTGAGCTGGAAAT+TGG - chr4.1:15957021-15957040 None:intergenic 40.0%
! AAGGTCTTCCACATTTTGCT+TGG - chr4.1:15956806-15956825 None:intergenic 40.0%
! CTTGTTAAGGTTAGTCCTGA+TGG + chr4.1:15956885-15956904 MS.gene34908:CDS 40.0%
!! TTAGTAGAATTGGCTTGTGC+AGG - chr4.1:15956936-15956955 None:intergenic 40.0%
ATGCTTTCACTTCGCCAAAC+AGG + chr4.1:15956380-15956399 MS.gene34908:CDS 45.0%
GCTAGCATAAGAAGCAAGCA+GGG - chr4.1:15957566-15957585 None:intergenic 45.0%
GGAATCAGAGTGACTGAGAA+TGG + chr4.1:15957448-15957467 MS.gene34908:CDS 45.0%
TCAGCAGTCCAAGCAAAATG+TGG + chr4.1:15956795-15956814 MS.gene34908:CDS 45.0%
TCCAAGCTCAAACCAAACGA+CGG + chr4.1:15957168-15957187 MS.gene34908:CDS 45.0%
TGCTAGCATAAGAAGCAAGC+AGG - chr4.1:15957567-15957586 None:intergenic 45.0%
TGGTCCAGATGAAGGTTTCA+AGG + chr4.1:15956354-15956373 MS.gene34908:CDS 45.0%
TTCCAGACACTGATAACCAG+CGG + chr4.1:15957115-15957134 MS.gene34908:CDS 45.0%
TTGGATGTAGATTCCGACAC+TGG + chr4.1:15956969-15956988 MS.gene34908:CDS 45.0%
! AATGGTGGAGGACCTTATGT+TGG + chr4.1:15956301-15956320 MS.gene34908:CDS 45.0%
!! CTGGAAATTGGTGCTAGCTT+CGG - chr4.1:15957009-15957028 None:intergenic 45.0%
!! GTATCTCTTGGTGCTGAGTA+TGG + chr4.1:15957487-15957506 MS.gene34908:CDS 45.0%
AGAGGCTATTCCATCGAGTC+GGG + chr4.1:15956557-15956576 MS.gene34908:intron 50.0%
CAGAGGCTATTCCATCGAGT+CGG + chr4.1:15956556-15956575 MS.gene34908:intron 50.0%
CCATCAGAGGAGCCAACATA+AGG - chr4.1:15956316-15956335 None:intergenic 50.0%
CTCAGTCACTCTGATTCCTC+CGG - chr4.1:15957446-15957465 None:intergenic 50.0%
GCTTCCTGAATTATCTCCGC+TGG - chr4.1:15957134-15957153 None:intergenic 50.0%
GGTGTGGCAGTAAGCAAAGA+TGG + chr4.1:15957220-15957239 MS.gene34908:CDS 50.0%
TCAGCTACCATCACCAGTGA+CGG + chr4.1:15956252-15956271 MS.gene34908:CDS 50.0%
TCAGTCACTCTGATTCCTCC+GGG - chr4.1:15957445-15957464 None:intergenic 50.0%
TTGCTTACTGCCACACCAGA+TGG - chr4.1:15957217-15957236 None:intergenic 50.0%
!! AACCAAACGACGGTGTTGCT+AGG + chr4.1:15957178-15957197 MS.gene34908:CDS 50.0%
!! ACCGTCGTTTGGTTTGAGCT+TGG - chr4.1:15957172-15957191 None:intergenic 50.0%
!! CCTTATGTTGGCTCCTCTGA+TGG + chr4.1:15956313-15956332 MS.gene34908:CDS 50.0%
ATCGAGTCGGGTGGGATCTA+TGG + chr4.1:15956569-15956588 MS.gene34908:intron 55.0%
CAGCTACCATCACCAGTGAC+GGG + chr4.1:15956253-15956272 MS.gene34908:CDS 55.0%
CGGGCAAAATCGTCCGTCTT+GGG - chr4.1:15957426-15957445 None:intergenic 55.0%
GCTATTCCATCGAGTCGGGT+GGG + chr4.1:15956561-15956580 MS.gene34908:intron 55.0%
GGGCAAAATCGTCCGTCTTG+GGG - chr4.1:15957425-15957444 None:intergenic 55.0%
TACTGCCACACCAGATGGCA+CGG - chr4.1:15957212-15957231 None:intergenic 55.0%
TCGAGTCGGGTGGGATCTAT+GGG + chr4.1:15956570-15956589 MS.gene34908:intron 55.0%
TGCCTAGCAACACCGTCGTT+TGG - chr4.1:15957183-15957202 None:intergenic 55.0%
! ATAGATCCCACCCGACTCGA+TGG - chr4.1:15956570-15956589 None:intergenic 55.0%
! CCAAGACGGACGATTTTGCC+CGG + chr4.1:15957424-15957443 MS.gene34908:CDS 55.0%
! CTCCGCTGGTTATCAGTGTC+TGG - chr4.1:15957120-15957139 None:intergenic 55.0%
AGTGACTCAGGACCCGTCAC+TGG - chr4.1:15956268-15956287 None:intergenic 60.0%
ATCGTCCGTCTTGGGGATCC+TGG - chr4.1:15957418-15957437 None:intergenic 60.0%
CCGGGCAAAATCGTCCGTCT+TGG - chr4.1:15957427-15957446 None:intergenic 60.0%
GACCACCAGGATCCCCAAGA+CGG + chr4.1:15957410-15957429 MS.gene34908:CDS 60.0%
GGCAATCTTGCCGTGCCATC+TGG + chr4.1:15957199-15957218 MS.gene34908:CDS 60.0%
GGCTATTCCATCGAGTCGGG+TGG + chr4.1:15956560-15956579 MS.gene34908:intron 60.0%
TCAGGACCCGTCACTGGTGA+TGG - chr4.1:15956262-15956281 None:intergenic 60.0%
TCTTGCCGTGCCATCTGGTG+TGG + chr4.1:15957204-15957223 MS.gene34908:CDS 60.0%
! AGACGGACGATTTTGCCCGG+AGG + chr4.1:15957427-15957446 MS.gene34908:CDS 60.0%
GTCCGTCTTGGGGATCCTGG+TGG - chr4.1:15957415-15957434 None:intergenic 65.0%
TCCTCTGCGCGCGATTGCAG+AGG + chr4.1:15956539-15956558 MS.gene34908:intron 65.0%
GCCTCTGCAATCGCGCGCAG+AGG - chr4.1:15956543-15956562 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 15956166 15957600 15956166 ID=MS.gene34908
chr4.1 mRNA 15956166 15957600 15956166 ID=MS.gene34908.t1;Parent=MS.gene34908
chr4.1 exon 15956166 15956401 15956166 ID=MS.gene34908.t1.exon1;Parent=MS.gene34908.t1
chr4.1 CDS 15956166 15956401 15956166 ID=cds.MS.gene34908.t1;Parent=MS.gene34908.t1
chr4.1 exon 15956761 15957033 15956761 ID=MS.gene34908.t1.exon2;Parent=MS.gene34908.t1
chr4.1 CDS 15956761 15957033 15956761 ID=cds.MS.gene34908.t1;Parent=MS.gene34908.t1
chr4.1 exon 15957111 15957600 15957111 ID=MS.gene34908.t1.exon3;Parent=MS.gene34908.t1
chr4.1 CDS 15957111 15957600 15957111 ID=cds.MS.gene34908.t1;Parent=MS.gene34908.t1
Gene Sequence

>MS.gene34908

ATGTTGAATATGGCAATGTTTGTCACTACAACTCTTGTTATCTTCATGTTATGTTCTCAATCAGTAGCTATATTACAGAAGAAGCTTCAGCTACCATCACCAGTGACGGGTCCTGAGTCACTTGCATTTGATAGAAATGGTGGAGGACCTTATGTTGGCTCCTCTGATGGAAGAATTTTTAAATATATTGGTCCAGATGAAGGTTTCAAGGAATATGCTTTCACTTCGCCAAACAGGTAAATAAATATATCAATCATCACCTATTAGCTAGCTAGATTCAAAAACTACTACGAGTTAAGTGACCGTTTATTTTGTAAAAAGTTTTATTTTCAATTTTTACTATCATCTTTTTTTTTTTTTGTGTGATCGGGTATCCTCTGCGCGCGATTGCAGAGGCTATTCCATCGAGTCGGGTGGGATCTATGGGAGACAAAGTTTTCCCTCAAGAAATTTAGCCTATCATCTTCTTTTCATGTTTATATAGAAAACACTGGGAAAAAAAAAAACGTTTTTCTTATTTTTTTGTGTGAATAAACAATGTGACAAATTTATAAATGAAAGTTAGTTAATGAATTCCTTTTTTATTTTGGTTCAGGAACAAGACAATATGTGATGGGATTGCAGACTTCTCAGCAGTCCAAGCAAAATGTGGAAGACCTTTAGGGTTGAGTTTCAATCATCAGACGGGCGATTTATACGTAGCTGATGCTTATTATGGCCTTGTTAAGGTTAGTCCTGATGGAGCAAATGTAACTCAATTAGTTGGACCTGCACAAGCCAATTCTACTAAGTTTGCTGATGGTTTGGATGTAGATTCCGACACTGGAATCGTTTATTTTACCGAAGCTAGCACCAATTTCCAGCTCAAGTAAGCATAGTTTCTTGCAGCTAAATGCCAATTCTGCATTACAATACTAAATGTGCATGTCACTTGGTTAATTGTAGGGATTTCCAGACACTGATAACCAGCGGAGATAATTCAGGAAGCCTATTAAGATATGATCCAAGCTCAAACCAAACGACGGTGTTGCTAGGCAATCTTGCCGTGCCATCTGGTGTGGCAGTAAGCAAAGATGGCTCATTTGTACTTGTTAGTGAATATCTATCAAACAGAATACAAAGAGTTTGGCTTAAAGGACCAAGAGCAAATTCATCAGAATTATTCATGTTACTTGCTGGAAGACCAGATAACATCAAGAGAAATTCAAGAGGCCAATTTTGGATTTCAGTGAATAGTTATTTAGGACCACCAGGATCCCCAAGACGGACGATTTTGCCCGGAGGAATCAGAGTGACTGAGAATGGTTTAATTTTACAGATTGTATCTCTTGGTGCTGAGTATGGTACTCAACCAGCTAGTGAGATTCAAGAGTATAATGGAACGCTCTATAGTGGCTCCCTGCTTGCTTCTTATGCTAGCATTTTTACCCCCTAG
Protein sequence

>MS.gene34908.t1

MLNMAMFVTTTLVIFMLCSQSVAILQKKLQLPSPVTGPESLAFDRNGGGPYVGSSDGRIFKYIGPDEGFKEYAFTSPNRNKTICDGIADFSAVQAKCGRPLGLSFNHQTGDLYVADAYYGLVKVSPDGANVTQLVGPAQANSTKFADGLDVDSDTGIVYFTEASTNFQLKDFQTLITSGDNSGSLLRYDPSSNQTTVLLGNLAVPSGVAVSKDGSFVLVSEYLSNRIQRVWLKGPRANSSELFMLLAGRPDNIKRNSRGQFWISVNSYLGPPGSPRRTILPGGIRVTENGLILQIVSLGAEYGTQPASEIQEYNGTLYSGSLLASYASIFTP