AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08295

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08295.t1 MTR_4g112670 84.290 331 48 3 1 327 4 334 0.0 557
MS.gene08295.t1 MTR_4g112650 79.876 323 62 2 9 328 12 334 0.0 525
MS.gene08295.t1 MTR_4g112630 73.874 333 72 4 2 329 4 326 1.89e-174 486
MS.gene08295.t1 MTR_4g112620 69.301 329 64 3 1 328 8 300 9.79e-161 451
MS.gene08295.t1 MTR_2g058450 54.397 307 139 1 22 327 28 334 7.48e-111 325
MS.gene08295.t1 MTR_0003s0530 82.222 180 30 1 142 319 2 181 6.44e-102 298
MS.gene08295.t1 MTR_7g490330 38.298 329 185 3 1 328 13 324 7.17e-78 241
MS.gene08295.t1 MTR_7g490350 37.931 319 171 2 33 327 52 367 4.64e-76 238
MS.gene08295.t1 MTR_2g058410 53.879 232 106 1 98 328 1 232 4.82e-75 231
MS.gene08295.t1 MTR_5g091980 40.741 297 154 4 33 328 47 322 1.20e-71 225
MS.gene08295.t1 MTR_7g090300 38.006 321 170 4 33 328 52 368 1.32e-71 226
MS.gene08295.t1 MTR_4g050190 37.758 339 174 9 21 327 56 389 2.09e-70 224
MS.gene08295.t1 MTR_2g087780 36.982 338 178 8 21 327 60 393 2.81e-70 224
MS.gene08295.t1 MTR_7g090320 37.394 353 182 8 6 324 35 382 6.27e-69 220
MS.gene08295.t1 MTR_7g090310 38.125 320 165 5 33 319 57 376 4.12e-65 210
MS.gene08295.t1 MTR_2g099030 33.832 334 190 6 22 325 70 402 1.52e-60 199
MS.gene08295.t1 MTR_4g112840 80.000 100 20 0 168 267 56 155 5.78e-53 172
MS.gene08295.t1 MTR_5g077620 86.905 84 11 0 1 84 1 84 7.13e-46 153
MS.gene08295.t1 MTR_5g077620 90.698 43 4 0 273 315 76 118 4.68e-19 82.8
MS.gene08295.t1 MTR_8g074210 33.463 257 141 5 18 268 56 288 1.66e-34 130
MS.gene08295.t1 MTR_8g074270 34.043 235 131 5 34 268 78 288 4.09e-32 123
MS.gene08295.t1 MTR_8g074170 34.061 229 127 5 34 262 78 282 1.01e-31 122
MS.gene08295.t1 MTR_2g042430 31.441 229 130 8 35 262 77 279 1.03e-23 100
MS.gene08295.t1 MTR_2g042420 31.004 229 131 8 35 262 58 260 8.58e-23 97.4
MS.gene08295.t1 MTR_2g042370 34.591 159 101 3 105 262 112 268 3.00e-22 96.3
MS.gene08295.t1 MTR_2g058430 54.118 85 39 0 87 171 50 134 2.73e-21 92.0
MS.gene08295.t1 MTR_8g074320 37.795 127 74 3 95 218 95 219 3.07e-18 82.4
MS.gene08295.t1 MTR_1g075865 37.963 108 66 1 145 251 4 111 2.53e-17 77.8
MS.gene08295.t1 MTR_5g093640 45.918 98 7 2 232 329 52 103 1.02e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08295.t1 AT1G74020 43.042 309 160 7 24 327 28 325 1.62e-75 235
MS.gene08295.t1 AT3G57030 39.564 321 165 4 33 327 55 372 1.91e-74 234
MS.gene08295.t1 AT1G74010 42.295 305 165 6 24 326 27 322 4.85e-73 229
MS.gene08295.t1 AT1G74000 40.391 307 171 5 24 327 30 327 1.91e-71 225
MS.gene08295.t1 AT1G08470 37.048 332 176 7 25 327 60 387 5.73e-70 223
MS.gene08295.t1 AT5G22020 36.310 336 180 8 22 327 62 393 1.00e-68 220
MS.gene08295.t1 AT5G22020 36.310 336 180 8 22 327 62 393 1.00e-68 220
MS.gene08295.t1 AT5G22020 36.310 336 180 8 22 327 62 393 1.00e-68 220
MS.gene08295.t1 AT3G57010 40.984 244 138 2 21 264 41 278 4.70e-67 215
MS.gene08295.t1 AT3G57020 38.525 244 144 1 21 264 40 277 5.38e-62 202
MS.gene08295.t1 AT2G41290 37.003 327 170 8 34 327 51 374 4.52e-61 199
MS.gene08295.t1 AT3G59530 37.751 249 149 3 25 268 75 322 2.85e-57 191
MS.gene08295.t1 AT3G59530 37.751 249 149 3 25 268 75 322 2.85e-57 191
MS.gene08295.t1 AT3G59530 37.751 249 149 3 25 268 75 322 2.85e-57 191
MS.gene08295.t1 AT3G57020 36.475 244 135 1 21 264 40 263 6.36e-57 188
MS.gene08295.t1 AT2G41300 33.117 308 174 5 39 320 83 384 7.54e-55 184
MS.gene08295.t1 AT3G51440 27.698 278 158 8 32 303 67 307 1.51e-26 108
MS.gene08295.t1 AT3G51430 29.870 231 139 6 35 264 70 278 2.54e-24 102
MS.gene08295.t1 AT3G51430 29.437 231 140 6 35 264 70 278 3.58e-24 101
MS.gene08295.t1 AT3G51420 27.157 313 187 11 32 325 67 357 2.07e-23 99.8
MS.gene08295.t1 AT3G51450 29.060 234 137 7 35 264 70 278 4.71e-23 98.6

Find 79 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTCAAGAGGCCAATTT+TGG 0.142569 4.2:+15481313 MS.gene08295:CDS
ATACAAAGAGTTTGGCTTAA+AGG 0.191016 4.2:+15481228 MS.gene08295:CDS
ATTTCAGTGAATAGTTATTT+AGG 0.235492 4.2:+15481336 MS.gene08295:CDS
GCAAAATGTGGAAGACCTTT+AGG 0.259656 4.2:+15480755 MS.gene08295:CDS
GAATTTCTCTTGATGTTATC+TGG 0.262648 4.2:-15481297 None:intergenic
TGCTTACTTGAGCTGGAAAT+TGG 0.273371 4.2:-15480966 None:intergenic
TATTCACTGAAATCCAAAAT+TGG 0.293830 4.2:-15481326 None:intergenic
ATCAGCAAACTTAGTAGAAT+TGG 0.304645 4.2:-15480891 None:intergenic
CGGGCAAAATCGTCCGTCTT+GGG 0.319086 4.2:-15481371 None:intergenic
AGCTTGGATCATATCTTAAT+AGG 0.319761 4.2:-15481101 None:intergenic
CAAACAGAATACAAAGAGTT+TGG 0.323375 4.2:+15481220 MS.gene08295:CDS
CAAAATGTGGAAGACCTTTA+GGG 0.331794 4.2:+15480756 MS.gene08295:CDS
TACTAAGTTTGCTGATGGTT+TGG 0.332839 4.2:+15480898 MS.gene08295:CDS
GTATCTCTTGGTGCTGAGTA+TGG 0.338967 4.2:+15481435 MS.gene08295:CDS
GATATATTTATTTACCTGTT+TGG 0.346046 4.2:-15480338 None:intergenic
TACGTAGCTGATGCTTATTA+TGG 0.348144 4.2:+15480809 MS.gene08295:CDS
GGCAATCTTGCCGTGCCATC+TGG 0.359780 4.2:+15481147 MS.gene08295:CDS
GAATTATTCATGTTACTTGC+TGG 0.369585 4.2:+15481270 MS.gene08295:CDS
CTCAGTCACTCTGATTCCTC+CGG 0.409015 4.2:-15481391 None:intergenic
TGCTTATTATGGCCTTGTTA+AGG 0.409890 4.2:+15480820 MS.gene08295:CDS
TGAGTTACATTTGCTCCATC+AGG 0.418940 4.2:-15480848 None:intergenic
CCGGGCAAAATCGTCCGTCT+TGG 0.422570 4.2:-15481372 None:intergenic
AATTCTGATGAATTTGCTCT+TGG 0.423029 4.2:-15481252 None:intergenic
AGTGAGATTCAAGAGTATAA+TGG 0.429524 4.2:+15481471 MS.gene08295:CDS
ATAACCAGCGGAGATAATTC+AGG 0.430534 4.2:+15481075 MS.gene08295:CDS
TGCCTAGCAACACCGTCGTT+TGG 0.431318 4.2:-15481128 None:intergenic
ATCGTCCGTCTTGGGGATCC+TGG 0.434461 4.2:-15481363 None:intergenic
ATGCTTTCACTTCGCCAAAC+AGG 0.434792 4.2:+15480324 MS.gene08295:CDS
CTCCGCTGGTTATCAGTGTC+TGG 0.435095 4.2:-15481065 None:intergenic
GAAACTATGCTTACTTGAGC+TGG 0.440498 4.2:-15480973 None:intergenic
AAATATATTGGTCCAGATGA+AGG 0.448616 4.2:+15480290 MS.gene08295:CDS
TATTCCTTGAAACCTTCATC+TGG 0.461685 4.2:-15480302 None:intergenic
CTGGAAATTGGTGCTAGCTT+CGG 0.463996 4.2:-15480954 None:intergenic
CTTGTTAAGGTTAGTCCTGA+TGG 0.465547 4.2:+15480833 MS.gene08295:CDS
TCACTTGCATTTGATAGAAA+TGG 0.471351 4.2:+15480227 MS.gene08295:CDS
GCAAATGTAACTCAATTAGT+TGG 0.471990 4.2:+15480857 MS.gene08295:CDS
TGGTCCAGATGAAGGTTTCA+AGG 0.472200 4.2:+15480298 MS.gene08295:CDS
CCTTATGTTGGCTCCTCTGA+TGG 0.473712 4.2:+15480257 MS.gene08295:CDS
ACCGTCGTTTGGTTTGAGCT+TGG 0.476304 4.2:-15481117 None:intergenic
TACTCTTGAATCTCACTAGC+TGG 0.484772 4.2:-15481465 None:intergenic
GGAATCAGAGTGACTGAGAA+TGG 0.488784 4.2:+15481396 MS.gene08295:CDS
TTAGTAGAATTGGCTTGTGC+AGG 0.492686 4.2:-15480881 None:intergenic
TGCTAGCATAAGAAGCAAGC+AGG 0.502038 4.2:-15481512 None:intergenic
TATAATGGAACGCTCTATAG+TGG 0.504379 4.2:+15481486 MS.gene08295:CDS
CCATCAGAGGAGCCAACATA+AGG 0.508307 4.2:-15480257 None:intergenic
TTGGATGTAGATTCCGACAC+TGG 0.519237 4.2:+15480917 MS.gene08295:CDS
CTATCAAATGCAAGTGACTC+AGG 0.521823 4.2:-15480221 None:intergenic
GCTTCCTGAATTATCTCCGC+TGG 0.522068 4.2:-15481079 None:intergenic
GGGCAAAATCGTCCGTCTTG+GGG 0.530545 4.2:-15481370 None:intergenic
CTTGCATTTGATAGAAATGG+TGG 0.539336 4.2:+15480230 MS.gene08295:CDS
AAAATAAACGATTCCAGTGT+CGG 0.540943 4.2:-15480930 None:intergenic
AGTGACTCAGGACCCGTCAC+TGG 0.541604 4.2:-15480209 None:intergenic
TCAGTCACTCTGATTCCTCC+GGG 0.543329 4.2:-15481390 None:intergenic
AACCAAACGACGGTGTTGCT+AGG 0.548086 4.2:+15481126 MS.gene08295:CDS
GGTGTGGCAGTAAGCAAAGA+TGG 0.552392 4.2:+15481168 MS.gene08295:CDS
TTGCTTACTGCCACACCAGA+TGG 0.555964 4.2:-15481162 None:intergenic
TACTGCCACACCAGATGGCA+CGG 0.561460 4.2:-15481157 None:intergenic
TGATTGAAACTCAACCCTAA+AGG 0.563318 4.2:-15480770 None:intergenic
TTGAGTTTCAATCATCAGAC+GGG 0.566766 4.2:+15480779 MS.gene08295:CDS
AATTCTACTAAGTTTGCTGA+TGG 0.568034 4.2:+15480893 MS.gene08295:CDS
TCAGCTACCATCACCAGTGA+CGG 0.576414 4.2:+15480196 MS.gene08295:CDS
TCAGGACCCGTCACTGGTGA+TGG 0.579014 4.2:-15480203 None:intergenic
GCTAGCATAAGAAGCAAGCA+GGG 0.580108 4.2:-15481511 None:intergenic
AGGAACAAGACAATATGTGA+TGG 0.582363 4.2:+15480707 MS.gene08295:intron
TCTTGCCGTGCCATCTGGTG+TGG 0.588262 4.2:+15481152 MS.gene08295:CDS
GTTGAGTTTCAATCATCAGA+CGG 0.594215 4.2:+15480778 MS.gene08295:CDS
GGAACAAGACAATATGTGAT+GGG 0.595406 4.2:+15480708 MS.gene08295:intron
CAGCTACCATCACCAGTGAC+GGG 0.598096 4.2:+15480197 MS.gene08295:CDS
AATAGTTATTTAGGACCACC+AGG 0.606094 4.2:+15481345 MS.gene08295:CDS
TCAGCAGTCCAAGCAAAATG+TGG 0.607995 4.2:+15480743 MS.gene08295:CDS
AATGGTGGAGGACCTTATGT+TGG 0.609545 4.2:+15480245 MS.gene08295:CDS
GCATTTGATAGAAATGGTGG+AGG 0.613633 4.2:+15480233 MS.gene08295:CDS
AACATCAAGAGAAATTCAAG+AGG 0.624735 4.2:+15481303 MS.gene08295:CDS
CATCAGGACTAACCTTAACA+AGG 0.625058 4.2:-15480832 None:intergenic
GTCCGTCTTGGGGATCCTGG+TGG 0.630185 4.2:-15481360 None:intergenic
GACCACCAGGATCCCCAAGA+CGG 0.653131 4.2:+15481358 MS.gene08295:CDS
AGTAAGTAAAATACTCTAGG+GGG 0.687710 4.2:-15481541 None:intergenic
TTCCAGACACTGATAACCAG+CGG 0.693066 4.2:+15481063 MS.gene08295:CDS
TCCAAGCTCAAACCAAACGA+CGG 0.707803 4.2:+15481116 MS.gene08295:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTTTACAAAATAAA+CGG - chr4.2:15480419-15480438 None:intergenic 10.0%
!!! AATGAATTCCTTTTTTATTT+TGG + chr4.2:15480681-15480700 MS.gene08295:intron 15.0%
!!! GGAAGAATTTTTAAATATAT+TGG + chr4.2:15480278-15480297 MS.gene08295:CDS 15.0%
!!! TTTTTTTTTTTTTGTGTGAT+CGG + chr4.2:15480461-15480480 MS.gene08295:intron 15.0%
!! ATGTTTATATAGAAAACACT+GGG + chr4.2:15480586-15480605 MS.gene08295:intron 20.0%
!! ATTTCAGTGAATAGTTATTT+AGG + chr4.2:15481336-15481355 MS.gene08295:CDS 20.0%
!! GATATATTTATTTACCTGTT+TGG - chr4.2:15480341-15480360 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGTGATC+GGG + chr4.2:15480462-15480481 MS.gene08295:intron 20.0%
! AAACATGAAAAGAAGATGAT+AGG - chr4.2:15480572-15480591 None:intergenic 25.0%
! AATCTAGCTAGCTAATTAAT+AGG - chr4.2:15480372-15480391 None:intergenic 25.0%
! CATGTTTATATAGAAAACAC+TGG + chr4.2:15480585-15480604 MS.gene08295:intron 25.0%
! TATTCACTGAAATCCAAAAT+TGG - chr4.2:15481329-15481348 None:intergenic 25.0%
! TTAGTATTGTAATGCAGAAT+TGG - chr4.2:15481012-15481031 None:intergenic 25.0%
! TTCCTGAACCAAAATAAAAA+AGG - chr4.2:15480692-15480711 None:intergenic 25.0%
! TTTAAAAATTCTTCCATCAG+AGG - chr4.2:15480273-15480292 None:intergenic 25.0%
!! ATTTTACAGATTGTATCTCT+TGG + chr4.2:15481423-15481442 MS.gene08295:CDS 25.0%
!!! TTCCTTTTTTATTTTGGTTC+AGG + chr4.2:15480687-15480706 MS.gene08295:intron 25.0%
AAAATAAACGATTCCAGTGT+CGG - chr4.2:15480933-15480952 None:intergenic 30.0%
AAATATATTGGTCCAGATGA+AGG + chr4.2:15480290-15480309 MS.gene08295:CDS 30.0%
AACATCAAGAGAAATTCAAG+AGG + chr4.2:15481303-15481322 MS.gene08295:CDS 30.0%
AGCTTGGATCATATCTTAAT+AGG - chr4.2:15481104-15481123 None:intergenic 30.0%
ATCAGCAAACTTAGTAGAAT+TGG - chr4.2:15480894-15480913 None:intergenic 30.0%
ATGATAGGCTAAATTTCTTG+AGG - chr4.2:15480557-15480576 None:intergenic 30.0%
CAAACAGAATACAAAGAGTT+TGG + chr4.2:15481220-15481239 MS.gene08295:CDS 30.0%
GAATTTCTCTTGATGTTATC+TGG - chr4.2:15481300-15481319 None:intergenic 30.0%
GCAAATGTAACTCAATTAGT+TGG + chr4.2:15480857-15480876 MS.gene08295:CDS 30.0%
TCACTTGCATTTGATAGAAA+TGG + chr4.2:15480227-15480246 MS.gene08295:CDS 30.0%
TGATAGGCTAAATTTCTTGA+GGG - chr4.2:15480556-15480575 None:intergenic 30.0%
! AATTCTGATGAATTTGCTCT+TGG - chr4.2:15481255-15481274 None:intergenic 30.0%
! AGTGAGATTCAAGAGTATAA+TGG + chr4.2:15481471-15481490 MS.gene08295:CDS 30.0%
! ATACAAAGAGTTTGGCTTAA+AGG + chr4.2:15481228-15481247 MS.gene08295:CDS 30.0%
! ATGTCACTTGGTTAATTGTA+GGG + chr4.2:15481038-15481057 MS.gene08295:intron 30.0%
! GAATTATTCATGTTACTTGC+TGG + chr4.2:15481270-15481289 MS.gene08295:CDS 30.0%
!! AATTCTACTAAGTTTGCTGA+TGG + chr4.2:15480893-15480912 MS.gene08295:CDS 30.0%
AGGAACAAGACAATATGTGA+TGG + chr4.2:15480707-15480726 MS.gene08295:intron 35.0%
CAAAATGTGGAAGACCTTTA+GGG + chr4.2:15480756-15480775 MS.gene08295:CDS 35.0%
CTTGCATTTGATAGAAATGG+TGG + chr4.2:15480230-15480249 MS.gene08295:CDS 35.0%
GGAACAAGACAATATGTGAT+GGG + chr4.2:15480708-15480727 MS.gene08295:intron 35.0%
GTTGAGTTTCAATCATCAGA+CGG + chr4.2:15480778-15480797 MS.gene08295:CDS 35.0%
TACGTAGCTGATGCTTATTA+TGG + chr4.2:15480809-15480828 MS.gene08295:CDS 35.0%
TACTAAATGTGCATGTCACT+TGG + chr4.2:15481026-15481045 MS.gene08295:intron 35.0%
TATTCCTTGAAACCTTCATC+TGG - chr4.2:15480305-15480324 None:intergenic 35.0%
TGATTGAAACTCAACCCTAA+AGG - chr4.2:15480773-15480792 None:intergenic 35.0%
TTGAGTTTCAATCATCAGAC+GGG + chr4.2:15480779-15480798 MS.gene08295:CDS 35.0%
! AATAGTTATTTAGGACCACC+AGG + chr4.2:15481345-15481364 MS.gene08295:CDS 35.0%
! CATGTCACTTGGTTAATTGT+AGG + chr4.2:15481037-15481056 MS.gene08295:intron 35.0%
! GAAATTCAAGAGGCCAATTT+TGG + chr4.2:15481313-15481332 MS.gene08295:CDS 35.0%
! TATAATGGAACGCTCTATAG+TGG + chr4.2:15481486-15481505 MS.gene08295:CDS 35.0%
!! TACTAAGTTTGCTGATGGTT+TGG + chr4.2:15480898-15480917 MS.gene08295:CDS 35.0%
!! TGCTTATTATGGCCTTGTTA+AGG + chr4.2:15480820-15480839 MS.gene08295:CDS 35.0%
ATAACCAGCGGAGATAATTC+AGG + chr4.2:15481075-15481094 MS.gene08295:CDS 40.0%
CATCAGGACTAACCTTAACA+AGG - chr4.2:15480835-15480854 None:intergenic 40.0%
CTATCAAATGCAAGTGACTC+AGG - chr4.2:15480224-15480243 None:intergenic 40.0%
GAAACTATGCTTACTTGAGC+TGG - chr4.2:15480976-15480995 None:intergenic 40.0%
GCAAAATGTGGAAGACCTTT+AGG + chr4.2:15480755-15480774 MS.gene08295:CDS 40.0%
GCATTTGATAGAAATGGTGG+AGG + chr4.2:15480233-15480252 MS.gene08295:CDS 40.0%
TACTCTTGAATCTCACTAGC+TGG - chr4.2:15481468-15481487 None:intergenic 40.0%
TGAGTTACATTTGCTCCATC+AGG - chr4.2:15480851-15480870 None:intergenic 40.0%
TGCTTACTTGAGCTGGAAAT+TGG - chr4.2:15480969-15480988 None:intergenic 40.0%
! AAGGTCTTCCACATTTTGCT+TGG - chr4.2:15480754-15480773 None:intergenic 40.0%
! CTTGTTAAGGTTAGTCCTGA+TGG + chr4.2:15480833-15480852 MS.gene08295:CDS 40.0%
!! TTAGTAGAATTGGCTTGTGC+AGG - chr4.2:15480884-15480903 None:intergenic 40.0%
ATGCTTTCACTTCGCCAAAC+AGG + chr4.2:15480324-15480343 MS.gene08295:CDS 45.0%
GCTAGCATAAGAAGCAAGCA+GGG - chr4.2:15481514-15481533 None:intergenic 45.0%
GGAATCAGAGTGACTGAGAA+TGG + chr4.2:15481396-15481415 MS.gene08295:CDS 45.0%
TCAGCAGTCCAAGCAAAATG+TGG + chr4.2:15480743-15480762 MS.gene08295:CDS 45.0%
TCCAAGCTCAAACCAAACGA+CGG + chr4.2:15481116-15481135 MS.gene08295:CDS 45.0%
TGCTAGCATAAGAAGCAAGC+AGG - chr4.2:15481515-15481534 None:intergenic 45.0%
TGGTCCAGATGAAGGTTTCA+AGG + chr4.2:15480298-15480317 MS.gene08295:CDS 45.0%
TTCCAGACACTGATAACCAG+CGG + chr4.2:15481063-15481082 MS.gene08295:CDS 45.0%
TTGGATGTAGATTCCGACAC+TGG + chr4.2:15480917-15480936 MS.gene08295:CDS 45.0%
! AATGGTGGAGGACCTTATGT+TGG + chr4.2:15480245-15480264 MS.gene08295:CDS 45.0%
!! CTGGAAATTGGTGCTAGCTT+CGG - chr4.2:15480957-15480976 None:intergenic 45.0%
!! GTATCTCTTGGTGCTGAGTA+TGG + chr4.2:15481435-15481454 MS.gene08295:CDS 45.0%
CCATCAGAGGAGCCAACATA+AGG - chr4.2:15480260-15480279 None:intergenic 50.0%
CTCAGTCACTCTGATTCCTC+CGG - chr4.2:15481394-15481413 None:intergenic 50.0%
CTGAGGCTATTCCATCGAGT+CGG + chr4.2:15480504-15480523 MS.gene08295:intron 50.0%
GCTTCCTGAATTATCTCCGC+TGG - chr4.2:15481082-15481101 None:intergenic 50.0%
GGTGTGGCAGTAAGCAAAGA+TGG + chr4.2:15481168-15481187 MS.gene08295:CDS 50.0%
TCAGCTACCATCACCAGTGA+CGG + chr4.2:15480196-15480215 MS.gene08295:CDS 50.0%
TCAGTCACTCTGATTCCTCC+GGG - chr4.2:15481393-15481412 None:intergenic 50.0%
TGAGGCTATTCCATCGAGTC+GGG + chr4.2:15480505-15480524 MS.gene08295:intron 50.0%
TTGCTTACTGCCACACCAGA+TGG - chr4.2:15481165-15481184 None:intergenic 50.0%
!! AACCAAACGACGGTGTTGCT+AGG + chr4.2:15481126-15481145 MS.gene08295:CDS 50.0%
!! ACCGTCGTTTGGTTTGAGCT+TGG - chr4.2:15481120-15481139 None:intergenic 50.0%
!! CCTTATGTTGGCTCCTCTGA+TGG + chr4.2:15480257-15480276 MS.gene08295:CDS 50.0%
ATCGAGTCGGGTGGGATCTA+TGG + chr4.2:15480517-15480536 MS.gene08295:intron 55.0%
CAGCTACCATCACCAGTGAC+GGG + chr4.2:15480197-15480216 MS.gene08295:CDS 55.0%
CGGGCAAAATCGTCCGTCTT+GGG - chr4.2:15481374-15481393 None:intergenic 55.0%
GCTATTCCATCGAGTCGGGT+GGG + chr4.2:15480509-15480528 MS.gene08295:intron 55.0%
GGGCAAAATCGTCCGTCTTG+GGG - chr4.2:15481373-15481392 None:intergenic 55.0%
TACTGCCACACCAGATGGCA+CGG - chr4.2:15481160-15481179 None:intergenic 55.0%
TCGAGTCGGGTGGGATCTAT+GGG + chr4.2:15480518-15480537 MS.gene08295:intron 55.0%
TGCCTAGCAACACCGTCGTT+TGG - chr4.2:15481131-15481150 None:intergenic 55.0%
! ATAGATCCCACCCGACTCGA+TGG - chr4.2:15480518-15480537 None:intergenic 55.0%
! CCAAGACGGACGATTTTGCC+CGG + chr4.2:15481372-15481391 MS.gene08295:CDS 55.0%
! CTCCGCTGGTTATCAGTGTC+TGG - chr4.2:15481068-15481087 None:intergenic 55.0%
AGTGACTCAGGACCCGTCAC+TGG - chr4.2:15480212-15480231 None:intergenic 60.0%
ATCGTCCGTCTTGGGGATCC+TGG - chr4.2:15481366-15481385 None:intergenic 60.0%
CCGGGCAAAATCGTCCGTCT+TGG - chr4.2:15481375-15481394 None:intergenic 60.0%
GACCACCAGGATCCCCAAGA+CGG + chr4.2:15481358-15481377 MS.gene08295:CDS 60.0%
GGCAATCTTGCCGTGCCATC+TGG + chr4.2:15481147-15481166 MS.gene08295:CDS 60.0%
GGCTATTCCATCGAGTCGGG+TGG + chr4.2:15480508-15480527 MS.gene08295:intron 60.0%
TCAGGACCCGTCACTGGTGA+TGG - chr4.2:15480206-15480225 None:intergenic 60.0%
TCTTGCCGTGCCATCTGGTG+TGG + chr4.2:15481152-15481171 MS.gene08295:CDS 60.0%
! AGACGGACGATTTTGCCCGG+AGG + chr4.2:15481375-15481394 MS.gene08295:CDS 60.0%
GTCCGTCTTGGGGATCCTGG+TGG - chr4.2:15481363-15481382 None:intergenic 65.0%
TCCTCTGCGCGCGATTGCTG+AGG + chr4.2:15480487-15480506 MS.gene08295:intron 65.0%
GCCTCAGCAATCGCGCGCAG+AGG - chr4.2:15480491-15480510 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 15480119 15481548 15480119 ID=MS.gene08295
chr4.2 mRNA 15480119 15481548 15480119 ID=MS.gene08295.t1;Parent=MS.gene08295
chr4.2 exon 15480119 15480345 15480119 ID=MS.gene08295.t1.exon1;Parent=MS.gene08295.t1
chr4.2 CDS 15480119 15480345 15480119 ID=cds.MS.gene08295.t1;Parent=MS.gene08295.t1
chr4.2 exon 15480709 15480981 15480709 ID=MS.gene08295.t1.exon2;Parent=MS.gene08295.t1
chr4.2 CDS 15480709 15480981 15480709 ID=cds.MS.gene08295.t1;Parent=MS.gene08295.t1
chr4.2 exon 15481059 15481548 15481059 ID=MS.gene08295.t1.exon3;Parent=MS.gene08295.t1
chr4.2 CDS 15481059 15481548 15481059 ID=cds.MS.gene08295.t1;Parent=MS.gene08295.t1
Gene Sequence

>MS.gene08295

ATGGCAATGTTTGTCACTACAACTCTTGTTATCTTCATGTTATGTTCTCAATCAGTAGCTATATTACAGAAGAAGCTTCAGCTACCATCACCAGTGACGGGTCCTGAGTCACTTGCATTTGATAGAAATGGTGGAGGACCTTATGTTGGCTCCTCTGATGGAAGAATTTTTAAATATATTGGTCCAGATGAAGGTTTCAAGGAATATGCTTTCACTTCGCCAAACAGGTAAATAAATATATCAATCATCACCTATTAATTAGCTAGCTAGATTCAAAAACTACTACGAGTTAAGTGACCGTTTATTTTGTAAAAAGTTTTATTTTCAATTTTTACTATCATCTTTTTTTTTTTTTGTGTGATCGGGTATCCTCTGCGCGCGATTGCTGAGGCTATTCCATCGAGTCGGGTGGGATCTATGGGAGACAAAGTTTTCCCTCAAGAAATTTAGCCTATCATCTTCTTTTCATGTTTATATAGAAAACACTGGGAAAAAAAAAAACGTTTTTCTTATTTTTTTGTGTGAATAAACAATGTGACAAATTTATAAATGAAAGTTAGTTAATGAATTCCTTTTTTATTTTGGTTCAGGAACAAGACAATATGTGATGGGATTGCAGACTTCTCAGCAGTCCAAGCAAAATGTGGAAGACCTTTAGGGTTGAGTTTCAATCATCAGACGGGCGATTTATACGTAGCTGATGCTTATTATGGCCTTGTTAAGGTTAGTCCTGATGGAGCAAATGTAACTCAATTAGTTGGACCTGCACAAGCCAATTCTACTAAGTTTGCTGATGGTTTGGATGTAGATTCCGACACTGGAATCGTTTATTTTACCGAAGCTAGCACCAATTTCCAGCTCAAGTAAGCATAGTTTCTTGCAGCTAAATGCCAATTCTGCATTACAATACTAAATGTGCATGTCACTTGGTTAATTGTAGGGATTTCCAGACACTGATAACCAGCGGAGATAATTCAGGAAGCCTATTAAGATATGATCCAAGCTCAAACCAAACGACGGTGTTGCTAGGCAATCTTGCCGTGCCATCTGGTGTGGCAGTAAGCAAAGATGGCTCATTTGTACTTGTTAGTGAATATCTATCAAACAGAATACAAAGAGTTTGGCTTAAAGGACCAAGAGCAAATTCATCAGAATTATTCATGTTACTTGCTGGAAGACCAGATAACATCAAGAGAAATTCAAGAGGCCAATTTTGGATTTCAGTGAATAGTTATTTAGGACCACCAGGATCCCCAAGACGGACGATTTTGCCCGGAGGAATCAGAGTGACTGAGAATGGTTTAATTTTACAGATTGTATCTCTTGGTGCTGAGTATGGTACTCAACCAGCTAGTGAGATTCAAGAGTATAATGGAACGCTCTATAGTGGCTCCCTGCTTGCTTCTTATGCTAGCATTTTTACCCCCTAG
Protein sequence

>MS.gene08295.t1

MAMFVTTTLVIFMLCSQSVAILQKKLQLPSPVTGPESLAFDRNGGGPYVGSSDGRIFKYIGPDEGFKEYAFTSPNRNKTICDGIADFSAVQAKCGRPLGLSFNHQTGDLYVADAYYGLVKVSPDGANVTQLVGPAQANSTKFADGLDVDSDTGIVYFTEASTNFQLKDFQTLITSGDNSGSLLRYDPSSNQTTVLLGNLAVPSGVAVSKDGSFVLVSEYLSNRIQRVWLKGPRANSSELFMLLAGRPDNIKRNSRGQFWISVNSYLGPPGSPRRTILPGGIRVTENGLILQIVSLGAEYGTQPASEIQEYNGTLYSGSLLASYASIFTP