AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08297

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08297.t1 MTR_4g112670 84.431 334 48 3 1 330 1 334 0.0 563
MS.gene08297.t1 MTR_4g112650 77.844 334 70 3 2 331 1 334 0.0 525
MS.gene08297.t1 MTR_4g112630 73.214 336 75 4 2 332 1 326 1.51e-174 487
MS.gene08297.t1 MTR_4g112620 68.750 336 64 4 1 331 1 300 1.06e-160 451
MS.gene08297.t1 MTR_2g058450 54.397 307 139 1 25 330 28 334 9.00e-111 325
MS.gene08297.t1 MTR_0003s0530 82.222 180 30 1 145 322 2 181 6.15e-102 298
MS.gene08297.t1 MTR_7g490330 38.298 329 185 3 4 331 13 324 8.28e-78 241
MS.gene08297.t1 MTR_7g490350 37.931 319 171 2 36 330 52 367 4.65e-76 238
MS.gene08297.t1 MTR_2g058410 53.879 232 106 1 101 331 1 232 4.09e-75 231
MS.gene08297.t1 MTR_5g091980 39.645 338 174 7 2 331 7 322 5.07e-72 226
MS.gene08297.t1 MTR_7g090300 38.006 321 170 4 36 331 52 368 1.22e-71 227
MS.gene08297.t1 MTR_4g050190 37.758 339 174 9 24 330 56 389 2.11e-70 224
MS.gene08297.t1 MTR_2g087780 36.982 338 178 8 24 330 60 393 3.03e-70 224
MS.gene08297.t1 MTR_7g090320 37.500 352 181 8 9 326 35 381 4.08e-69 221
MS.gene08297.t1 MTR_7g090310 38.125 320 165 5 36 322 57 376 3.62e-65 211
MS.gene08297.t1 MTR_2g099030 33.832 334 190 6 25 328 70 402 1.88e-60 199
MS.gene08297.t1 MTR_4g112840 80.000 100 20 0 171 270 56 155 6.86e-53 172
MS.gene08297.t1 MTR_5g077620 86.905 84 11 0 4 87 1 84 6.10e-46 153
MS.gene08297.t1 MTR_5g077620 90.698 43 4 0 276 318 76 118 4.34e-19 82.8
MS.gene08297.t1 MTR_8g074210 33.463 257 141 5 21 271 56 288 1.53e-34 130
MS.gene08297.t1 MTR_8g074270 34.043 235 131 5 37 271 78 288 3.83e-32 123
MS.gene08297.t1 MTR_8g074170 34.061 229 127 5 37 265 78 282 9.22e-32 122
MS.gene08297.t1 MTR_2g042430 31.441 229 130 8 38 265 77 279 9.12e-24 100
MS.gene08297.t1 MTR_2g042420 31.004 229 131 8 38 265 58 260 7.56e-23 97.8
MS.gene08297.t1 MTR_2g042370 34.591 159 101 3 108 265 112 268 3.06e-22 96.3
MS.gene08297.t1 MTR_2g058430 54.118 85 39 0 90 174 50 134 3.13e-21 91.7
MS.gene08297.t1 MTR_8g074320 37.795 127 74 3 98 221 95 219 3.03e-18 82.4
MS.gene08297.t1 MTR_1g075865 37.963 108 66 1 148 254 4 111 2.51e-17 77.8
MS.gene08297.t1 MTR_5g093640 45.918 98 7 2 235 332 52 103 1.26e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08297.t1 AT1G74020 43.042 309 160 7 27 330 28 325 2.04e-75 235
MS.gene08297.t1 AT3G57030 39.564 321 165 4 36 330 55 372 1.95e-74 234
MS.gene08297.t1 AT1G74010 42.295 305 165 6 27 329 27 322 4.22e-73 229
MS.gene08297.t1 AT1G74000 40.391 307 171 5 27 330 30 327 2.08e-71 225
MS.gene08297.t1 AT1G08470 37.048 332 176 7 28 330 60 387 9.19e-70 223
MS.gene08297.t1 AT5G22020 36.310 336 180 8 25 330 62 393 1.09e-68 220
MS.gene08297.t1 AT5G22020 36.310 336 180 8 25 330 62 393 1.09e-68 220
MS.gene08297.t1 AT5G22020 36.310 336 180 8 25 330 62 393 1.09e-68 220
MS.gene08297.t1 AT3G57010 40.984 244 138 2 24 267 41 278 4.40e-67 215
MS.gene08297.t1 AT3G57020 38.525 244 144 1 24 267 40 277 5.48e-62 202
MS.gene08297.t1 AT2G41290 37.003 327 170 8 37 330 51 374 5.29e-61 199
MS.gene08297.t1 AT3G59530 37.751 249 149 3 28 271 75 322 2.66e-57 191
MS.gene08297.t1 AT3G59530 37.751 249 149 3 28 271 75 322 2.66e-57 191
MS.gene08297.t1 AT3G59530 37.751 249 149 3 28 271 75 322 2.66e-57 191
MS.gene08297.t1 AT3G57020 36.475 244 135 1 24 267 40 263 7.18e-57 188
MS.gene08297.t1 AT2G41300 33.117 308 174 5 42 323 83 384 5.86e-55 184
MS.gene08297.t1 AT3G51440 27.698 278 158 8 35 306 67 307 1.43e-26 108
MS.gene08297.t1 AT3G51430 29.870 231 139 6 38 267 70 278 2.20e-24 102
MS.gene08297.t1 AT3G51430 29.437 231 140 6 38 267 70 278 2.89e-24 102
MS.gene08297.t1 AT3G51420 27.157 313 187 11 35 328 67 357 2.44e-23 99.4
MS.gene08297.t1 AT3G51450 29.060 234 137 7 38 267 70 278 3.80e-23 99.0

Find 81 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTCAAGAGGCCAATTT+TGG 0.142569 4.3:+17005977 MS.gene08297:CDS
ATACAAAGAGTTTGGCTTAA+AGG 0.191016 4.3:+17005892 MS.gene08297:CDS
ATTTCAGTGAATAGTTATTT+AGG 0.235492 4.3:+17006000 MS.gene08297:CDS
ATTGGTAACCATGTTGAATA+TGG 0.244460 4.3:+17004764 None:intergenic
GCAAAATGTGGAAGACCTTT+AGG 0.259656 4.3:+17005419 MS.gene08297:CDS
GAATTTCTCTTGATGTTATC+TGG 0.262648 4.3:-17005961 None:intergenic
TGCTTACTTGAGCTGGAAAT+TGG 0.273371 4.3:-17005630 None:intergenic
TATTCACTGAAATCCAAAAT+TGG 0.293830 4.3:-17005990 None:intergenic
ATCAGCAAACTTAGTAGAAT+TGG 0.304645 4.3:-17005555 None:intergenic
CGGGCAAAATCGTCCGTCTT+GGG 0.319086 4.3:-17006035 None:intergenic
AGCTTGGATCATATCTTAAT+AGG 0.319761 4.3:-17005765 None:intergenic
CAAACAGAATACAAAGAGTT+TGG 0.323375 4.3:+17005884 MS.gene08297:CDS
CAAAATGTGGAAGACCTTTA+GGG 0.331794 4.3:+17005420 MS.gene08297:CDS
TACTAAGTTTGCTGATGGTT+TGG 0.332839 4.3:+17005562 MS.gene08297:CDS
GTATCTCTTGGTGCTGAGTA+TGG 0.338967 4.3:+17006099 MS.gene08297:CDS
GATATATTTATTTACCTGTT+TGG 0.346046 4.3:-17005002 None:intergenic
TACGTAGCTGATGCTTATTA+TGG 0.348144 4.3:+17005473 MS.gene08297:CDS
GGCAATCTTGCCGTGCCATC+TGG 0.359780 4.3:+17005811 MS.gene08297:CDS
GAATTATTCATGTTACTTGC+TGG 0.369585 4.3:+17005934 MS.gene08297:CDS
CTCAGTCACTCTGATTCCTC+CGG 0.409015 4.3:-17006055 None:intergenic
TGCTTATTATGGCCTTGTTA+AGG 0.409890 4.3:+17005484 MS.gene08297:CDS
TGAGTTACATTTGCTCCATC+AGG 0.418940 4.3:-17005512 None:intergenic
CCGGGCAAAATCGTCCGTCT+TGG 0.422570 4.3:-17006036 None:intergenic
AATTCTGATGAATTTGCTCT+TGG 0.423029 4.3:-17005916 None:intergenic
AGTGAGATTCAAGAGTATAA+TGG 0.429524 4.3:+17006135 MS.gene08297:CDS
ATAACCAGCGGAGATAATTC+AGG 0.430534 4.3:+17005739 MS.gene08297:CDS
TGCCTAGCAACACCGTCGTT+TGG 0.431318 4.3:-17005792 None:intergenic
ATCGTCCGTCTTGGGGATCC+TGG 0.434461 4.3:-17006027 None:intergenic
ATGCTTTCACTTCGCCAAAC+AGG 0.434792 4.3:+17004988 MS.gene08297:CDS
CTCCGCTGGTTATCAGTGTC+TGG 0.435095 4.3:-17005729 None:intergenic
GAAACTATGCTTACTTGAGC+TGG 0.440498 4.3:-17005637 None:intergenic
AAATATATTGGTCCAGATGA+AGG 0.448616 4.3:+17004954 MS.gene08297:CDS
TATTCCTTGAAACCTTCATC+TGG 0.461685 4.3:-17004966 None:intergenic
CTGGAAATTGGTGCTAGCTT+CGG 0.463996 4.3:-17005618 None:intergenic
CTTGTTAAGGTTAGTCCTGA+TGG 0.465547 4.3:+17005497 MS.gene08297:CDS
TCACTTGCATTTGATAGAAA+TGG 0.471351 4.3:+17004891 MS.gene08297:CDS
GCAAATGTAACTCAATTAGT+TGG 0.471990 4.3:+17005521 MS.gene08297:CDS
TGGTCCAGATGAAGGTTTCA+AGG 0.472200 4.3:+17004962 MS.gene08297:CDS
CCTTATGTTGGCTCCTCTGA+TGG 0.473712 4.3:+17004921 MS.gene08297:CDS
ACCGTCGTTTGGTTTGAGCT+TGG 0.476304 4.3:-17005781 None:intergenic
TACTCTTGAATCTCACTAGC+TGG 0.484772 4.3:-17006129 None:intergenic
GGAATCAGAGTGACTGAGAA+TGG 0.488784 4.3:+17006060 MS.gene08297:CDS
TTAGTAGAATTGGCTTGTGC+AGG 0.492686 4.3:-17005545 None:intergenic
TGCTAGCATAAGAAGCAAGC+AGG 0.502038 4.3:-17006176 None:intergenic
TATAATGGAACGCTCTATAG+TGG 0.504379 4.3:+17006150 MS.gene08297:CDS
CCATCAGAGGAGCCAACATA+AGG 0.508307 4.3:-17004921 None:intergenic
TTGGATGTAGATTCCGACAC+TGG 0.519237 4.3:+17005581 MS.gene08297:CDS
CTATCAAATGCAAGTGACTC+AGG 0.521823 4.3:-17004885 None:intergenic
GCTTCCTGAATTATCTCCGC+TGG 0.522068 4.3:-17005743 None:intergenic
GGGCAAAATCGTCCGTCTTG+GGG 0.530545 4.3:-17006034 None:intergenic
CTTGCATTTGATAGAAATGG+TGG 0.539336 4.3:+17004894 MS.gene08297:CDS
AAAATAAACGATTCCAGTGT+CGG 0.540943 4.3:-17005594 None:intergenic
AGTGACTCAGGACCCGTCAC+TGG 0.541604 4.3:-17004873 None:intergenic
TCAGTCACTCTGATTCCTCC+GGG 0.543329 4.3:-17006054 None:intergenic
AACCAAACGACGGTGTTGCT+AGG 0.548086 4.3:+17005790 MS.gene08297:CDS
GGTGTGGCAGTAAGCAAAGA+TGG 0.552392 4.3:+17005832 MS.gene08297:CDS
TTGCTTACTGCCACACCAGA+TGG 0.555964 4.3:-17005826 None:intergenic
TACTGCCACACCAGATGGCA+CGG 0.561460 4.3:-17005821 None:intergenic
TGATTGAAACTCAACCCTAA+AGG 0.563318 4.3:-17005434 None:intergenic
TTGAGTTTCAATCATCAGAC+GGG 0.566766 4.3:+17005443 MS.gene08297:CDS
AATTCTACTAAGTTTGCTGA+TGG 0.568034 4.3:+17005557 MS.gene08297:CDS
TCAGCTACCATCACCAGTGA+CGG 0.576414 4.3:+17004860 MS.gene08297:CDS
TCAGGACCCGTCACTGGTGA+TGG 0.579014 4.3:-17004867 None:intergenic
GCTAGCATAAGAAGCAAGCA+GGG 0.580108 4.3:-17006175 None:intergenic
AGGAACAAGACAATATGTGA+TGG 0.582363 4.3:+17005371 MS.gene08297:intron
TCTTGCCGTGCCATCTGGTG+TGG 0.588262 4.3:+17005816 MS.gene08297:CDS
GTTGAGTTTCAATCATCAGA+CGG 0.594215 4.3:+17005442 MS.gene08297:CDS
GGAACAAGACAATATGTGAT+GGG 0.595406 4.3:+17005372 MS.gene08297:intron
CAGCTACCATCACCAGTGAC+GGG 0.598096 4.3:+17004861 MS.gene08297:CDS
AATAGTTATTTAGGACCACC+AGG 0.606094 4.3:+17006009 MS.gene08297:CDS
TCAGCAGTCCAAGCAAAATG+TGG 0.607995 4.3:+17005407 MS.gene08297:CDS
AATGGTGGAGGACCTTATGT+TGG 0.609545 4.3:+17004909 MS.gene08297:CDS
GCATTTGATAGAAATGGTGG+AGG 0.613633 4.3:+17004897 MS.gene08297:CDS
AACATCAAGAGAAATTCAAG+AGG 0.624735 4.3:+17005967 MS.gene08297:CDS
CATCAGGACTAACCTTAACA+AGG 0.625058 4.3:-17005496 None:intergenic
GTCCGTCTTGGGGATCCTGG+TGG 0.630185 4.3:-17006024 None:intergenic
GACCACCAGGATCCCCAAGA+CGG 0.653131 4.3:+17006022 MS.gene08297:CDS
AAACATTGCCATATTCAACA+TGG 0.672591 4.3:-17004772 None:intergenic
AGTAAGTAAAATACTCTAGG+GGG 0.687710 4.3:-17006205 None:intergenic
TTCCAGACACTGATAACCAG+CGG 0.693066 4.3:+17005727 MS.gene08297:CDS
TCCAAGCTCAAACCAAACGA+CGG 0.707803 4.3:+17005780 MS.gene08297:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTTTACAAAATAAA+CGG - chr4.3:17005083-17005102 None:intergenic 10.0%
!!! AATGAATTCCTTTTTTATTT+TGG + chr4.3:17005345-17005364 MS.gene08297:intron 15.0%
!!! GGAAGAATTTTTAAATATAT+TGG + chr4.3:17004942-17004961 MS.gene08297:CDS 15.0%
!!! TTTTTTTTTTTTTGTGTGAT+CGG + chr4.3:17005125-17005144 MS.gene08297:intron 15.0%
!! ATGTTTATATAGAAAACACT+GGG + chr4.3:17005250-17005269 MS.gene08297:intron 20.0%
!! ATTTCAGTGAATAGTTATTT+AGG + chr4.3:17006000-17006019 MS.gene08297:CDS 20.0%
!! GATATATTTATTTACCTGTT+TGG - chr4.3:17005005-17005024 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGTGATC+GGG + chr4.3:17005126-17005145 MS.gene08297:intron 20.0%
! AAACATGAAAAGAAGATGAT+AGG - chr4.3:17005236-17005255 None:intergenic 25.0%
! AATCTAGCTAGCTAATTAAT+AGG - chr4.3:17005036-17005055 None:intergenic 25.0%
! CATGTTTATATAGAAAACAC+TGG + chr4.3:17005249-17005268 MS.gene08297:intron 25.0%
! TATTCACTGAAATCCAAAAT+TGG - chr4.3:17005993-17006012 None:intergenic 25.0%
! TTAGTATTGTAATGCAGAAT+TGG - chr4.3:17005676-17005695 None:intergenic 25.0%
! TTCCTGAACCAAAATAAAAA+AGG - chr4.3:17005356-17005375 None:intergenic 25.0%
! TTTAAAAATTCTTCCATCAG+AGG - chr4.3:17004937-17004956 None:intergenic 25.0%
!! ATTTTACAGATTGTATCTCT+TGG + chr4.3:17006087-17006106 MS.gene08297:CDS 25.0%
!!! TTCCTTTTTTATTTTGGTTC+AGG + chr4.3:17005351-17005370 MS.gene08297:intron 25.0%
AAAATAAACGATTCCAGTGT+CGG - chr4.3:17005597-17005616 None:intergenic 30.0%
AAATATATTGGTCCAGATGA+AGG + chr4.3:17004954-17004973 MS.gene08297:CDS 30.0%
AACATCAAGAGAAATTCAAG+AGG + chr4.3:17005967-17005986 MS.gene08297:CDS 30.0%
AGCTTGGATCATATCTTAAT+AGG - chr4.3:17005768-17005787 None:intergenic 30.0%
ATCAGCAAACTTAGTAGAAT+TGG - chr4.3:17005558-17005577 None:intergenic 30.0%
ATGATAGGCTAAATTTCTTG+AGG - chr4.3:17005221-17005240 None:intergenic 30.0%
CAAACAGAATACAAAGAGTT+TGG + chr4.3:17005884-17005903 MS.gene08297:CDS 30.0%
GAATTTCTCTTGATGTTATC+TGG - chr4.3:17005964-17005983 None:intergenic 30.0%
GCAAATGTAACTCAATTAGT+TGG + chr4.3:17005521-17005540 MS.gene08297:CDS 30.0%
TCACTTGCATTTGATAGAAA+TGG + chr4.3:17004891-17004910 MS.gene08297:CDS 30.0%
TGATAGGCTAAATTTCTTGA+GGG - chr4.3:17005220-17005239 None:intergenic 30.0%
! AATTCTGATGAATTTGCTCT+TGG - chr4.3:17005919-17005938 None:intergenic 30.0%
! AGTGAGATTCAAGAGTATAA+TGG + chr4.3:17006135-17006154 MS.gene08297:CDS 30.0%
! ATACAAAGAGTTTGGCTTAA+AGG + chr4.3:17005892-17005911 MS.gene08297:CDS 30.0%
! ATGTCACTTGGTTAATTGTA+GGG + chr4.3:17005702-17005721 MS.gene08297:intron 30.0%
! GAATTATTCATGTTACTTGC+TGG + chr4.3:17005934-17005953 MS.gene08297:CDS 30.0%
!! AATTCTACTAAGTTTGCTGA+TGG + chr4.3:17005557-17005576 MS.gene08297:CDS 30.0%
AGGAACAAGACAATATGTGA+TGG + chr4.3:17005371-17005390 MS.gene08297:intron 35.0%
CAAAATGTGGAAGACCTTTA+GGG + chr4.3:17005420-17005439 MS.gene08297:CDS 35.0%
CTTGCATTTGATAGAAATGG+TGG + chr4.3:17004894-17004913 MS.gene08297:CDS 35.0%
GGAACAAGACAATATGTGAT+GGG + chr4.3:17005372-17005391 MS.gene08297:intron 35.0%
GTTGAGTTTCAATCATCAGA+CGG + chr4.3:17005442-17005461 MS.gene08297:CDS 35.0%
TACGTAGCTGATGCTTATTA+TGG + chr4.3:17005473-17005492 MS.gene08297:CDS 35.0%
TACTAAATGTGCATGTCACT+TGG + chr4.3:17005690-17005709 MS.gene08297:intron 35.0%
TATTCCTTGAAACCTTCATC+TGG - chr4.3:17004969-17004988 None:intergenic 35.0%
TGATTGAAACTCAACCCTAA+AGG - chr4.3:17005437-17005456 None:intergenic 35.0%
TTGAGTTTCAATCATCAGAC+GGG + chr4.3:17005443-17005462 MS.gene08297:CDS 35.0%
! AATAGTTATTTAGGACCACC+AGG + chr4.3:17006009-17006028 MS.gene08297:CDS 35.0%
! CATGTCACTTGGTTAATTGT+AGG + chr4.3:17005701-17005720 MS.gene08297:intron 35.0%
! GAAATTCAAGAGGCCAATTT+TGG + chr4.3:17005977-17005996 MS.gene08297:CDS 35.0%
! TATAATGGAACGCTCTATAG+TGG + chr4.3:17006150-17006169 MS.gene08297:CDS 35.0%
!! TACTAAGTTTGCTGATGGTT+TGG + chr4.3:17005562-17005581 MS.gene08297:CDS 35.0%
!! TGCTTATTATGGCCTTGTTA+AGG + chr4.3:17005484-17005503 MS.gene08297:CDS 35.0%
ATAACCAGCGGAGATAATTC+AGG + chr4.3:17005739-17005758 MS.gene08297:CDS 40.0%
CATCAGGACTAACCTTAACA+AGG - chr4.3:17005499-17005518 None:intergenic 40.0%
CTATCAAATGCAAGTGACTC+AGG - chr4.3:17004888-17004907 None:intergenic 40.0%
GAAACTATGCTTACTTGAGC+TGG - chr4.3:17005640-17005659 None:intergenic 40.0%
GCAAAATGTGGAAGACCTTT+AGG + chr4.3:17005419-17005438 MS.gene08297:CDS 40.0%
GCATTTGATAGAAATGGTGG+AGG + chr4.3:17004897-17004916 MS.gene08297:CDS 40.0%
TACTCTTGAATCTCACTAGC+TGG - chr4.3:17006132-17006151 None:intergenic 40.0%
TGAGTTACATTTGCTCCATC+AGG - chr4.3:17005515-17005534 None:intergenic 40.0%
TGCTTACTTGAGCTGGAAAT+TGG - chr4.3:17005633-17005652 None:intergenic 40.0%
! AAGGTCTTCCACATTTTGCT+TGG - chr4.3:17005418-17005437 None:intergenic 40.0%
! CTTGTTAAGGTTAGTCCTGA+TGG + chr4.3:17005497-17005516 MS.gene08297:CDS 40.0%
!! TTAGTAGAATTGGCTTGTGC+AGG - chr4.3:17005548-17005567 None:intergenic 40.0%
ATGCTTTCACTTCGCCAAAC+AGG + chr4.3:17004988-17005007 MS.gene08297:CDS 45.0%
GCTAGCATAAGAAGCAAGCA+GGG - chr4.3:17006178-17006197 None:intergenic 45.0%
GGAATCAGAGTGACTGAGAA+TGG + chr4.3:17006060-17006079 MS.gene08297:CDS 45.0%
TCAGCAGTCCAAGCAAAATG+TGG + chr4.3:17005407-17005426 MS.gene08297:CDS 45.0%
TCCAAGCTCAAACCAAACGA+CGG + chr4.3:17005780-17005799 MS.gene08297:CDS 45.0%
TGCTAGCATAAGAAGCAAGC+AGG - chr4.3:17006179-17006198 None:intergenic 45.0%
TGGTCCAGATGAAGGTTTCA+AGG + chr4.3:17004962-17004981 MS.gene08297:CDS 45.0%
TTCCAGACACTGATAACCAG+CGG + chr4.3:17005727-17005746 MS.gene08297:CDS 45.0%
TTGGATGTAGATTCCGACAC+TGG + chr4.3:17005581-17005600 MS.gene08297:CDS 45.0%
! AATGGTGGAGGACCTTATGT+TGG + chr4.3:17004909-17004928 MS.gene08297:CDS 45.0%
!! CTGGAAATTGGTGCTAGCTT+CGG - chr4.3:17005621-17005640 None:intergenic 45.0%
!! GTATCTCTTGGTGCTGAGTA+TGG + chr4.3:17006099-17006118 MS.gene08297:CDS 45.0%
CCATCAGAGGAGCCAACATA+AGG - chr4.3:17004924-17004943 None:intergenic 50.0%
CTCAGTCACTCTGATTCCTC+CGG - chr4.3:17006058-17006077 None:intergenic 50.0%
CTGAGGCTATTCCATCGAGT+CGG + chr4.3:17005168-17005187 MS.gene08297:intron 50.0%
GCTTCCTGAATTATCTCCGC+TGG - chr4.3:17005746-17005765 None:intergenic 50.0%
GGTGTGGCAGTAAGCAAAGA+TGG + chr4.3:17005832-17005851 MS.gene08297:CDS 50.0%
TCAGCTACCATCACCAGTGA+CGG + chr4.3:17004860-17004879 MS.gene08297:CDS 50.0%
TCAGTCACTCTGATTCCTCC+GGG - chr4.3:17006057-17006076 None:intergenic 50.0%
TGAGGCTATTCCATCGAGTC+GGG + chr4.3:17005169-17005188 MS.gene08297:intron 50.0%
TTGCTTACTGCCACACCAGA+TGG - chr4.3:17005829-17005848 None:intergenic 50.0%
!! AACCAAACGACGGTGTTGCT+AGG + chr4.3:17005790-17005809 MS.gene08297:CDS 50.0%
!! ACCGTCGTTTGGTTTGAGCT+TGG - chr4.3:17005784-17005803 None:intergenic 50.0%
!! CCTTATGTTGGCTCCTCTGA+TGG + chr4.3:17004921-17004940 MS.gene08297:CDS 50.0%
ATCGAGTCGGGTGGGATCTA+TGG + chr4.3:17005181-17005200 MS.gene08297:intron 55.0%
CAGCTACCATCACCAGTGAC+GGG + chr4.3:17004861-17004880 MS.gene08297:CDS 55.0%
CGGGCAAAATCGTCCGTCTT+GGG - chr4.3:17006038-17006057 None:intergenic 55.0%
GCTATTCCATCGAGTCGGGT+GGG + chr4.3:17005173-17005192 MS.gene08297:intron 55.0%
GGGCAAAATCGTCCGTCTTG+GGG - chr4.3:17006037-17006056 None:intergenic 55.0%
TACTGCCACACCAGATGGCA+CGG - chr4.3:17005824-17005843 None:intergenic 55.0%
TCGAGTCGGGTGGGATCTAT+GGG + chr4.3:17005182-17005201 MS.gene08297:intron 55.0%
TGCCTAGCAACACCGTCGTT+TGG - chr4.3:17005795-17005814 None:intergenic 55.0%
! ATAGATCCCACCCGACTCGA+TGG - chr4.3:17005182-17005201 None:intergenic 55.0%
! CCAAGACGGACGATTTTGCC+CGG + chr4.3:17006036-17006055 MS.gene08297:CDS 55.0%
! CTCCGCTGGTTATCAGTGTC+TGG - chr4.3:17005732-17005751 None:intergenic 55.0%
AGTGACTCAGGACCCGTCAC+TGG - chr4.3:17004876-17004895 None:intergenic 60.0%
ATCGTCCGTCTTGGGGATCC+TGG - chr4.3:17006030-17006049 None:intergenic 60.0%
CCGGGCAAAATCGTCCGTCT+TGG - chr4.3:17006039-17006058 None:intergenic 60.0%
GACCACCAGGATCCCCAAGA+CGG + chr4.3:17006022-17006041 MS.gene08297:CDS 60.0%
GGCAATCTTGCCGTGCCATC+TGG + chr4.3:17005811-17005830 MS.gene08297:CDS 60.0%
GGCTATTCCATCGAGTCGGG+TGG + chr4.3:17005172-17005191 MS.gene08297:intron 60.0%
TCAGGACCCGTCACTGGTGA+TGG - chr4.3:17004870-17004889 None:intergenic 60.0%
TCTTGCCGTGCCATCTGGTG+TGG + chr4.3:17005816-17005835 MS.gene08297:CDS 60.0%
! AGACGGACGATTTTGCCCGG+AGG + chr4.3:17006039-17006058 MS.gene08297:CDS 60.0%
GTCCGTCTTGGGGATCCTGG+TGG - chr4.3:17006027-17006046 None:intergenic 65.0%
TCCTCTGCGCGCGATTGCTG+AGG + chr4.3:17005151-17005170 MS.gene08297:intron 65.0%
GCCTCAGCAATCGCGCGCAG+AGG - chr4.3:17005155-17005174 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 17004774 17006212 17004774 ID=MS.gene08297
chr4.3 mRNA 17004774 17006212 17004774 ID=MS.gene08297.t1;Parent=MS.gene08297
chr4.3 exon 17004774 17005009 17004774 ID=MS.gene08297.t1.exon1;Parent=MS.gene08297.t1
chr4.3 CDS 17004774 17005009 17004774 ID=cds.MS.gene08297.t1;Parent=MS.gene08297.t1
chr4.3 exon 17005373 17005645 17005373 ID=MS.gene08297.t1.exon2;Parent=MS.gene08297.t1
chr4.3 CDS 17005373 17005645 17005373 ID=cds.MS.gene08297.t1;Parent=MS.gene08297.t1
chr4.3 exon 17005723 17006212 17005723 ID=MS.gene08297.t1.exon3;Parent=MS.gene08297.t1
chr4.3 CDS 17005723 17006212 17005723 ID=cds.MS.gene08297.t1;Parent=MS.gene08297.t1
Gene Sequence

>MS.gene08297

ATGTTGAATATGGCAATGTTTGTCACTACAACTCTTGTTATCTTCATGTTATGTTCTCAATCAGTAGCTATATTACAGAAGAAGCTTCAGCTACCATCACCAGTGACGGGTCCTGAGTCACTTGCATTTGATAGAAATGGTGGAGGACCTTATGTTGGCTCCTCTGATGGAAGAATTTTTAAATATATTGGTCCAGATGAAGGTTTCAAGGAATATGCTTTCACTTCGCCAAACAGGTAAATAAATATATCAATCATCACCTATTAATTAGCTAGCTAGATTCAAAAACTACTACGAGTTAAGTGACCGTTTATTTTGTAAAAAGTTTTATTTTCAATTTTTACTATCATCTTTTTTTTTTTTTGTGTGATCGGGTATCCTCTGCGCGCGATTGCTGAGGCTATTCCATCGAGTCGGGTGGGATCTATGGGAGACAAAGTTTTCCCTCAAGAAATTTAGCCTATCATCTTCTTTTCATGTTTATATAGAAAACACTGGGAAAAAAAAAAACGTTTTTCTTATTTTTTTGTGTGAATAAACAATGTGACAAATTTATAAATGAAAGTTAGTTAATGAATTCCTTTTTTATTTTGGTTCAGGAACAAGACAATATGTGATGGGATTGCAGACTTCTCAGCAGTCCAAGCAAAATGTGGAAGACCTTTAGGGTTGAGTTTCAATCATCAGACGGGCGATTTATACGTAGCTGATGCTTATTATGGCCTTGTTAAGGTTAGTCCTGATGGAGCAAATGTAACTCAATTAGTTGGACCTGCACAAGCCAATTCTACTAAGTTTGCTGATGGTTTGGATGTAGATTCCGACACTGGAATCGTTTATTTTACCGAAGCTAGCACCAATTTCCAGCTCAAGTAAGCATAGTTTCTTGCAGCTAAATGCCAATTCTGCATTACAATACTAAATGTGCATGTCACTTGGTTAATTGTAGGGATTTCCAGACACTGATAACCAGCGGAGATAATTCAGGAAGCCTATTAAGATATGATCCAAGCTCAAACCAAACGACGGTGTTGCTAGGCAATCTTGCCGTGCCATCTGGTGTGGCAGTAAGCAAAGATGGCTCATTTGTACTTGTTAGTGAATATCTATCAAACAGAATACAAAGAGTTTGGCTTAAAGGACCAAGAGCAAATTCATCAGAATTATTCATGTTACTTGCTGGAAGACCAGATAACATCAAGAGAAATTCAAGAGGCCAATTTTGGATTTCAGTGAATAGTTATTTAGGACCACCAGGATCCCCAAGACGGACGATTTTGCCCGGAGGAATCAGAGTGACTGAGAATGGTTTAATTTTACAGATTGTATCTCTTGGTGCTGAGTATGGTACTCAACCAGCTAGTGAGATTCAAGAGTATAATGGAACGCTCTATAGTGGCTCCCTGCTTGCTTCTTATGCTAGCATTTTTACCCCCTAG
Protein sequence

>MS.gene08297.t1

MLNMAMFVTTTLVIFMLCSQSVAILQKKLQLPSPVTGPESLAFDRNGGGPYVGSSDGRIFKYIGPDEGFKEYAFTSPNRNKTICDGIADFSAVQAKCGRPLGLSFNHQTGDLYVADAYYGLVKVSPDGANVTQLVGPAQANSTKFADGLDVDSDTGIVYFTEASTNFQLKDFQTLITSGDNSGSLLRYDPSSNQTTVLLGNLAVPSGVAVSKDGSFVLVSEYLSNRIQRVWLKGPRANSSELFMLLAGRPDNIKRNSRGQFWISVNSYLGPPGSPRRTILPGGIRVTENGLILQIVSLGAEYGTQPASEIQEYNGTLYSGSLLASYASIFTP