AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045793

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045793.t1 MTR_2g058450 79.822 337 66 2 1 336 1 336 8.32e-176 491
MS.gene045793.t1 MTR_2g058410 96.983 232 7 0 104 335 1 232 3.49e-164 457
MS.gene045793.t1 MTR_4g112650 54.464 336 150 2 1 335 1 334 9.94e-120 348
MS.gene045793.t1 MTR_4g112670 54.217 332 147 3 5 334 6 334 1.06e-115 338
MS.gene045793.t1 MTR_4g112630 52.819 337 145 3 1 335 1 325 2.03e-110 324
MS.gene045793.t1 MTR_4g112620 48.802 334 132 3 2 335 6 300 4.39e-99 295
MS.gene045793.t1 MTR_7g490330 41.368 307 160 5 31 336 38 325 9.60e-71 223
MS.gene045793.t1 MTR_7g490350 38.438 320 165 6 40 333 53 366 1.15e-66 214
MS.gene045793.t1 MTR_5g091980 40.909 308 159 5 30 336 38 323 1.58e-63 204
MS.gene045793.t1 MTR_7g090320 36.919 344 166 7 30 331 48 382 2.49e-63 206
MS.gene045793.t1 MTR_7g090310 37.805 328 164 8 40 331 58 381 1.95e-62 204
MS.gene045793.t1 MTR_7g090300 38.199 322 169 6 40 336 53 369 3.96e-62 202
MS.gene045793.t1 MTR_4g050190 37.195 328 169 9 37 333 67 388 1.88e-59 196
MS.gene045793.t1 MTR_2g087780 37.092 337 176 8 28 333 61 392 8.96e-58 192
MS.gene045793.t1 MTR_0003s0530 54.696 181 79 2 148 326 2 181 9.62e-58 186
MS.gene045793.t1 MTR_2g099030 32.047 337 197 5 28 334 70 404 4.53e-52 177
MS.gene045793.t1 MTR_2g058430 88.095 84 10 0 93 176 50 133 1.22e-46 159
MS.gene045793.t1 MTR_8g074210 33.193 238 126 6 40 273 78 286 1.03e-30 120
MS.gene045793.t1 MTR_8g074270 32.773 238 133 7 37 273 75 286 1.78e-27 110
MS.gene045793.t1 MTR_4g112840 51.485 101 48 1 174 274 56 155 4.90e-27 105
MS.gene045793.t1 MTR_8g074170 33.195 241 128 8 37 273 75 286 7.05e-26 106
MS.gene045793.t1 MTR_2g042430 32.479 234 128 8 38 269 74 279 1.19e-19 89.0
MS.gene045793.t1 MTR_2g042370 34.395 157 97 5 115 269 116 268 8.07e-17 80.9
MS.gene045793.t1 MTR_2g042420 29.487 234 135 8 38 269 55 260 7.69e-16 77.8
MS.gene045793.t1 MTR_8g074320 38.636 132 67 5 101 225 95 219 1.32e-15 75.1
MS.gene045793.t1 MTR_5g077620 48.235 85 41 1 7 91 4 85 5.33e-15 71.6
MS.gene045793.t1 MTR_1g075865 38.318 107 62 3 152 257 7 110 1.26e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045793.t1 AT1G74020 43.730 311 158 8 29 334 27 325 5.29e-76 237
MS.gene045793.t1 AT1G74000 41.748 309 167 6 29 334 29 327 8.26e-74 231
MS.gene045793.t1 AT1G74010 42.122 311 166 7 29 336 26 325 1.31e-69 220
MS.gene045793.t1 AT3G57030 40.190 316 155 7 39 326 55 364 8.45e-64 207
MS.gene045793.t1 AT5G22020 37.231 325 172 8 37 333 72 392 5.25e-61 200
MS.gene045793.t1 AT5G22020 37.231 325 172 8 37 333 72 392 5.25e-61 200
MS.gene045793.t1 AT5G22020 37.231 325 172 8 37 333 72 392 5.25e-61 200
MS.gene045793.t1 AT1G08470 36.810 326 172 9 37 333 66 386 7.10e-57 189
MS.gene045793.t1 AT2G41290 36.578 339 178 8 31 336 42 376 9.20e-57 189
MS.gene045793.t1 AT3G57010 40.164 244 137 4 28 270 42 277 1.87e-54 182
MS.gene045793.t1 AT3G57020 38.397 237 139 3 34 270 47 276 8.33e-51 173
MS.gene045793.t1 AT3G59530 38.397 237 137 5 40 270 84 317 5.48e-48 166
MS.gene045793.t1 AT3G59530 38.397 237 137 5 40 270 84 317 5.48e-48 166
MS.gene045793.t1 AT3G59530 38.397 237 137 5 40 270 84 317 5.48e-48 166
MS.gene045793.t1 AT2G41300 38.655 238 135 4 35 270 73 301 1.61e-47 165
MS.gene045793.t1 AT3G57020 35.443 237 132 2 34 270 47 262 5.22e-44 155
MS.gene045793.t1 AT3G51440 31.224 237 131 8 38 269 67 276 1.66e-23 100
MS.gene045793.t1 AT3G51430 29.536 237 135 8 38 269 67 276 1.75e-22 97.1
MS.gene045793.t1 AT3G51430 29.536 237 135 8 38 269 67 276 1.94e-22 97.1
MS.gene045793.t1 AT3G51450 28.390 236 139 7 38 269 67 276 8.40e-21 92.4

Find 91 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTACTAGGCAGCCCTTTC+GGG 0.172090 2.1:+35904153 MS.gene045793:CDS
TATATAGCTGATGCTTATTA+TGG 0.199171 2.1:+35904080 MS.gene045793:CDS
GGACCTCGAGGAACGAGTTT+TGG 0.237051 2.1:+35904940 MS.gene045793:CDS
CGAATAGAATCCGGAGATTC+TGG 0.258519 2.1:+35904847 MS.gene045793:CDS
ATCCGGAGATTCTGGCTTAC+AGG 0.284143 2.1:+35904855 MS.gene045793:CDS
GTGCCTCTTGTTGAGGAGTT+TGG 0.291880 2.1:+35905062 MS.gene045793:CDS
TAGGCCTCCCACATGTTTCT+TGG 0.297657 2.1:-35904022 None:intergenic
GTGGCAGTGAATTATCCTTT+TGG 0.303939 2.1:+35904963 MS.gene045793:CDS
AGATATATTCTTGTGGCTTC+CGG 0.309617 2.1:+35904896 MS.gene045793:CDS
GATATATTCTTGTGGCTTCC+GGG 0.327223 2.1:+35904897 MS.gene045793:CDS
AGCCCTTTCGGGTTTCTTGC+TGG 0.336808 2.1:+35904164 MS.gene045793:CDS
AATGTACTAGGCAGCCCTTT+CGG 0.343008 2.1:+35904152 MS.gene045793:CDS
CTTGTTGAGGAGTTTGGCAC+TGG 0.354664 2.1:+35905068 MS.gene045793:CDS
CGTAATCTAGCTATGGCAAC+AGG 0.355591 2.1:+35904774 MS.gene045793:CDS
AGCAACATGGCTGTTATCAC+TGG 0.386843 2.1:+35903467 MS.gene045793:CDS
TAGATGATGAATAGAGTATG+AGG 0.400964 2.1:-35903502 None:intergenic
CTCGGCTATTAAGGAGTCTC+TGG 0.402750 2.1:-35904689 None:intergenic
CTTGTGAAGGTTTCTTATGA+TGG 0.407212 2.1:+35904104 MS.gene045793:CDS
CAACTTGTTTCTAATGTACT+AGG 0.408485 2.1:+35904140 MS.gene045793:CDS
TATCTTCCACCATCACTAAC+AGG 0.409455 2.1:+35903557 MS.gene045793:CDS
TTGTTGGATTGTATCTGAAC+AGG 0.410505 2.1:-35904728 None:intergenic
CTTAGTCCAAGAGGCAAAAC+AGG 0.412973 2.1:-35905008 None:intergenic
AAATAAACGATTCCAGTGTT+AGG 0.413431 2.1:-35904200 None:intergenic
TCCCTAGCATTTGATTCCAT+TGG 0.419739 2.1:+35903587 MS.gene045793:CDS
CACTGGAATCGTTTATTTCA+CGG 0.419917 2.1:+35904205 MS.gene045793:CDS
CTAGCATTTGATTCCATTGG+TGG 0.422268 2.1:+35903590 MS.gene045793:CDS
TCTGTCTAGTAATTTGCAAT+AGG 0.427239 2.1:-35903531 None:intergenic
AATGTGGTTACTTTCGTTGT+TGG 0.436585 2.1:-35904744 None:intergenic
ATATCTGAAGTATATGCATT+TGG 0.445300 2.1:-35904879 None:intergenic
CTAGCTATTATCACAAGATC+AGG 0.448677 2.1:+35904231 MS.gene045793:CDS
AGAAACATGTGGGAGGCCTA+TGG 0.451046 2.1:+35904025 MS.gene045793:CDS
GAATCAAATGCTAGGGACTC+AGG 0.459141 2.1:-35903581 None:intergenic
GCATTTGATTCCATTGGTGG+AGG 0.460168 2.1:+35903593 MS.gene045793:CDS
CTGTTGCCATAGCTAGATTA+CGG 0.466820 2.1:-35904773 None:intergenic
GTCCTGTAAGCCAGAATCTC+CGG 0.467572 2.1:-35904857 None:intergenic
GAAACATGTGGGAGGCCTAT+GGG 0.483364 2.1:+35904026 MS.gene045793:CDS
CCTTACACTGGTGTTTCTGA+TGG 0.486655 2.1:+35903617 MS.gene045793:CDS
AGAGGCAAAACAGGAGGTAC+TGG 0.493237 2.1:-35904999 None:intergenic
AGAGGCTGTGCCTCTTGTTG+AGG 0.494455 2.1:+35905055 MS.gene045793:CDS
TTTCGGGTTTCTTGCTGGCG+TGG 0.506089 2.1:+35904169 MS.gene045793:CDS
CCATCAGAAACACCAGTGTA+AGG 0.510401 2.1:-35903617 None:intergenic
GACTCAGGGCCTGTTAGTGA+TGG 0.512435 2.1:-35903566 None:intergenic
TGTCCTTGTTAGTGAGTACA+AGG 0.517539 2.1:+35904824 MS.gene045793:CDS
AGTACAAGGCGAATAGAATC+CGG 0.518601 2.1:+35904838 MS.gene045793:CDS
AGATTAGACACGTACCGGTC+TGG 0.523062 2.1:-35903698 None:intergenic
ATTGGTGGAGGGCCTTACAC+TGG 0.525491 2.1:+35903605 MS.gene045793:CDS
AAAACAGGAGGTACTGGTGG+TGG 0.526815 2.1:-35904993 None:intergenic
CATTTGATTCCATTGGTGGA+GGG 0.528926 2.1:+35903594 MS.gene045793:CDS
GGAGACCAGATAACATCAAA+AGG 0.530015 2.1:+35904919 MS.gene045793:CDS
AGTGTAAGGCCCTCCACCAA+TGG 0.538991 2.1:-35903603 None:intergenic
TCAGGGCCTGTTAGTGATGG+TGG 0.541903 2.1:-35903563 None:intergenic
AGATGATGAATAGAGTATGA+GGG 0.545548 2.1:-35903501 None:intergenic
CGCCAGCAAGAAACCCGAAA+GGG 0.545590 2.1:-35904166 None:intergenic
TTGCTCACATTTCACCAGAC+CGG 0.560560 2.1:+35903684 MS.gene045793:CDS
TGCTTATTATGGACTTGTGA+AGG 0.563222 2.1:+35904091 MS.gene045793:CDS
ACCAATGGAATCAAATGCTA+GGG 0.565533 2.1:-35903588 None:intergenic
AGGAACAAAACAAATTGTGA+TGG 0.568815 2.1:+35903978 MS.gene045793:intron
TTGATGTTATCTGGTCTCCC+CGG 0.575311 2.1:-35904915 None:intergenic
CACCAATGGAATCAAATGCT+AGG 0.576942 2.1:-35903589 None:intergenic
GTTGCTCCGTAATCTAGCTA+TGG 0.579397 2.1:+35904767 MS.gene045793:CDS
ATACTTCAGATATATTCTTG+TGG 0.582130 2.1:+35904889 MS.gene045793:CDS
TCAGAACTCCAAGAAACATG+TGG 0.584132 2.1:+35904014 MS.gene045793:CDS
ACAGGAGGTACTGGTGGTGG+TGG 0.586387 2.1:-35904990 None:intergenic
GGGGTAGCAGTAAGCAGCAA+TGG 0.587063 2.1:+35904795 MS.gene045793:CDS
ATATATTCTTGTGGCTTCCG+GGG 0.588908 2.1:+35904898 MS.gene045793:CDS
GGACTAAGAATCAATGAGCA+AGG 0.590807 2.1:+35905023 MS.gene045793:CDS
CAGTGAAGTTCATGAAGCTG+AGG 0.595249 2.1:+35905097 MS.gene045793:CDS
GTAATCTAGCTATGGCAACA+GGG 0.595258 2.1:+35904775 MS.gene045793:CDS
AATCAAATGCTAGGGACTCA+GGG 0.595632 2.1:-35903580 None:intergenic
GTGCCAAACTCCTCAACAAG+AGG 0.597643 2.1:-35905065 None:intergenic
AAACATGTGGGAGGCCTATG+GGG 0.604258 2.1:+35904027 MS.gene045793:CDS
TCATTGATTCTTAGTCCAAG+AGG 0.611298 2.1:-35905017 None:intergenic
TAATTGAAACTCAACCCCAT+AGG 0.612502 2.1:-35904041 None:intergenic
GTGAAATGTGAGCAAACTCA+AGG 0.618650 2.1:-35903676 None:intergenic
GTGAAGGTTTCTTATGATGG+AGG 0.621834 2.1:+35904107 MS.gene045793:CDS
ATTAAACATGTCTAGCAACA+TGG 0.622340 2.1:+35903454 None:intergenic
GAGTTTCAATTACAAGACGA+AGG 0.625666 2.1:+35904052 MS.gene045793:CDS
GGTGGTGGTGGTGACCCAAA+AGG 0.627094 2.1:-35904978 None:intergenic
GCAACATGGCTGTTATCACT+GGG 0.627898 2.1:+35903468 MS.gene045793:CDS
ACGCCAGCAAGAAACCCGAA+AGG 0.628543 2.1:-35904167 None:intergenic
GGCAAAACAGGAGGTACTGG+TGG 0.653676 2.1:-35904996 None:intergenic
CAGAACTCCAAGAAACATGT+GGG 0.662175 2.1:+35904015 MS.gene045793:CDS
CACCCAAAACTCGTTCCTCG+AGG 0.665102 2.1:-35904943 None:intergenic
GTGGATGTCGATCCTAACAC+TGG 0.666158 2.1:+35904188 MS.gene045793:CDS
AGTGAAGTTCATGAAGCTGA+GGG 0.672665 2.1:+35905098 MS.gene045793:CDS
AACTCCAAGAAACATGTGGG+AGG 0.685654 2.1:+35904018 MS.gene045793:CDS
TCGCCTTGTACTCACTAACA+AGG 0.687142 2.1:-35904827 None:intergenic
TAATCTAGCTATGGCAACAG+GGG 0.694131 2.1:+35904776 MS.gene045793:CDS
AGTCCAAGAGGCAAAACAGG+AGG 0.699465 2.1:-35905005 None:intergenic
TAGATTACGGAGCAACAATG+TGG 0.714952 2.1:-35904760 None:intergenic
ATAACATCAAAAGGACCTCG+AGG 0.715796 2.1:+35904928 MS.gene045793:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAGGTCATAATAAAA+TGG + chr2.1:35903743-35903762 MS.gene045793:intron 15.0%
!! ATGGATGTCTATTATTATAT+AGG + chr2.1:35903729-35903748 MS.gene045793:intron 20.0%
!!! ATTTAGGTCACAATTTTAAT+CGG - chr2.1:35904656-35904675 None:intergenic 20.0%
! AAAAAATATCTCGGCTATTA+AGG - chr2.1:35904701-35904720 None:intergenic 25.0%
! AATCATGAGATAGATTAGAA+TGG - chr2.1:35904261-35904280 None:intergenic 25.0%
! ATACTTCAGATATATTCTTG+TGG + chr2.1:35904889-35904908 MS.gene045793:CDS 25.0%
! ATTATAGTCATAGTTGGTTA+AGG + chr2.1:35903932-35903951 MS.gene045793:intron 25.0%
! CATGTAATTATAGTCATAGT+TGG + chr2.1:35903926-35903945 MS.gene045793:intron 25.0%
! GTTGTGTTTATAAAGTGTAT+AGG - chr2.1:35904510-35904529 None:intergenic 25.0%
! TATATAGCTGATGCTTATTA+TGG + chr2.1:35904080-35904099 MS.gene045793:CDS 25.0%
! TCTCAAAGCATGTATATTAA+AGG + chr2.1:35904460-35904479 MS.gene045793:intron 25.0%
!! ATATCTGAAGTATATGCATT+TGG - chr2.1:35904882-35904901 None:intergenic 25.0%
!! CTTTGAGAAGAGAATATTAT+AGG - chr2.1:35904448-35904467 None:intergenic 25.0%
AAATAAACGATTCCAGTGTT+AGG - chr2.1:35904203-35904222 None:intergenic 30.0%
AATGTGAACATCTTTCTTGA+CGG - chr2.1:35903778-35903797 None:intergenic 30.0%
AGATGATGAATAGAGTATGA+GGG - chr2.1:35903504-35903523 None:intergenic 30.0%
AGGAACAAAACAAATTGTGA+TGG + chr2.1:35903978-35903997 MS.gene045793:intron 30.0%
TAGAGCAGATTAAACCTATA+TGG - chr2.1:35903816-35903835 None:intergenic 30.0%
TAGATGATGAATAGAGTATG+AGG - chr2.1:35903505-35903524 None:intergenic 30.0%
! AATTGTGACCTAAATTTTGC+AGG + chr2.1:35904661-35904680 MS.gene045793:intron 30.0%
! AGTATTGAACTTGACCATAT+AGG + chr2.1:35903799-35903818 MS.gene045793:intron 30.0%
! ATTGTGACCTAAATTTTGCA+GGG + chr2.1:35904662-35904681 MS.gene045793:intron 30.0%
! TCTGTCTAGTAATTTGCAAT+AGG - chr2.1:35903534-35903553 None:intergenic 30.0%
!! CAACTTGTTTCTAATGTACT+AGG + chr2.1:35904140-35904159 MS.gene045793:CDS 30.0%
!! TGAGCAAGGTTTAATTTTAG+AGG + chr2.1:35905037-35905056 MS.gene045793:CDS 30.0%
!!! AATAGCCGAGATATTTTTTC+TGG + chr2.1:35904702-35904721 MS.gene045793:CDS 30.0%
ACATTAGATTAGACACGTAC+CGG - chr2.1:35903706-35903725 None:intergenic 35.0%
ACCAATGGAATCAAATGCTA+GGG - chr2.1:35903591-35903610 None:intergenic 35.0%
AGATATATTCTTGTGGCTTC+CGG + chr2.1:35904896-35904915 MS.gene045793:CDS 35.0%
CACTGGAATCGTTTATTTCA+CGG + chr2.1:35904205-35904224 MS.gene045793:CDS 35.0%
CTAGCTATTATCACAAGATC+AGG + chr2.1:35904231-35904250 MS.gene045793:CDS 35.0%
CTTGTGAAGGTTTCTTATGA+TGG + chr2.1:35904104-35904123 MS.gene045793:CDS 35.0%
GAGTTTCAATTACAAGACGA+AGG + chr2.1:35904052-35904071 MS.gene045793:CDS 35.0%
GCAAATATTCTCTCTAGTCT+TGG + chr2.1:35904630-35904649 MS.gene045793:intron 35.0%
GGCTTCCAGAAAAAATATCT+CGG - chr2.1:35904710-35904729 None:intergenic 35.0%
GTGTCTAATCTAATGTGCAA+TGG + chr2.1:35903710-35903729 MS.gene045793:intron 35.0%
TAATTGAAACTCAACCCCAT+AGG - chr2.1:35904044-35904063 None:intergenic 35.0%
TATAGCAACGCGAAAAAACA+TGG - chr2.1:35904287-35904306 None:intergenic 35.0%
TGCTTATTATGGACTTGTGA+AGG + chr2.1:35904091-35904110 MS.gene045793:CDS 35.0%
TTCCTGTAACAACAATGACA+TGG - chr2.1:35903963-35903982 None:intergenic 35.0%
TTGTTGGATTGTATCTGAAC+AGG - chr2.1:35904731-35904750 None:intergenic 35.0%
! AACCATGTCATTGTTGTTAC+AGG + chr2.1:35903958-35903977 MS.gene045793:intron 35.0%
! AATGTGGTTACTTTCGTTGT+TGG - chr2.1:35904747-35904766 None:intergenic 35.0%
! TGGCAGTGAATTATCCTTTT+GGG + chr2.1:35904964-35904983 MS.gene045793:CDS 35.0%
!! TCATTGATTCTTAGTCCAAG+AGG - chr2.1:35905020-35905039 None:intergenic 35.0%
AATCAAATGCTAGGGACTCA+GGG - chr2.1:35903583-35903602 None:intergenic 40.0%
AGTACAAGGCGAATAGAATC+CGG + chr2.1:35904838-35904857 MS.gene045793:CDS 40.0%
AGTGAAGTTCATGAAGCTGA+GGG + chr2.1:35905098-35905117 MS.gene045793:CDS 40.0%
ATAACATCAAAAGGACCTCG+AGG + chr2.1:35904928-35904947 MS.gene045793:CDS 40.0%
ATATATTCTTGTGGCTTCCG+GGG + chr2.1:35904898-35904917 MS.gene045793:CDS 40.0%
CACCAATGGAATCAAATGCT+AGG - chr2.1:35903592-35903611 None:intergenic 40.0%
CAGAACTCCAAGAAACATGT+GGG + chr2.1:35904015-35904034 MS.gene045793:CDS 40.0%
CATTTGATTCCATTGGTGGA+GGG + chr2.1:35903594-35903613 MS.gene045793:CDS 40.0%
CTAGCATTTGATTCCATTGG+TGG + chr2.1:35903590-35903609 MS.gene045793:CDS 40.0%
CTGTTGCCATAGCTAGATTA+CGG - chr2.1:35904776-35904795 None:intergenic 40.0%
GATATATTCTTGTGGCTTCC+GGG + chr2.1:35904897-35904916 MS.gene045793:CDS 40.0%
GGACTAAGAATCAATGAGCA+AGG + chr2.1:35905023-35905042 MS.gene045793:CDS 40.0%
GGAGACCAGATAACATCAAA+AGG + chr2.1:35904919-35904938 MS.gene045793:CDS 40.0%
GTAATCTAGCTATGGCAACA+GGG + chr2.1:35904775-35904794 MS.gene045793:CDS 40.0%
GTGAAATGTGAGCAAACTCA+AGG - chr2.1:35903679-35903698 None:intergenic 40.0%
GTGAAGGTTTCTTATGATGG+AGG + chr2.1:35904107-35904126 MS.gene045793:CDS 40.0%
TAATCTAGCTATGGCAACAG+GGG + chr2.1:35904776-35904795 MS.gene045793:CDS 40.0%
TAGATTACGGAGCAACAATG+TGG - chr2.1:35904763-35904782 None:intergenic 40.0%
TATCTTCCACCATCACTAAC+AGG + chr2.1:35903557-35903576 MS.gene045793:CDS 40.0%
TCAGAACTCCAAGAAACATG+TGG + chr2.1:35904014-35904033 MS.gene045793:CDS 40.0%
TCCCTAGCATTTGATTCCAT+TGG + chr2.1:35903587-35903606 MS.gene045793:CDS 40.0%
TGATAGTAGTGAGTTCACAC+AGG + chr2.1:35904593-35904612 MS.gene045793:intron 40.0%
TGGAGATCCCTGCAAAATTT+AGG - chr2.1:35904672-35904691 None:intergenic 40.0%
TGTCCTTGTTAGTGAGTACA+AGG + chr2.1:35904824-35904843 MS.gene045793:CDS 40.0%
! GAGGTCCTTTTGATGTTATC+TGG - chr2.1:35904927-35904946 None:intergenic 40.0%
! GTGGCAGTGAATTATCCTTT+TGG + chr2.1:35904963-35904982 MS.gene045793:CDS 40.0%
! TCATGATGCCTTGATGATTC+AGG - chr2.1:35904394-35904413 None:intergenic 40.0%
AACTCCAAGAAACATGTGGG+AGG + chr2.1:35904018-35904037 MS.gene045793:CDS 45.0%
AATGTACTAGGCAGCCCTTT+CGG + chr2.1:35904152-35904171 MS.gene045793:CDS 45.0%
AGCAACATGGCTGTTATCAC+TGG + chr2.1:35903467-35903486 MS.gene045793:CDS 45.0%
CAGTGAAGTTCATGAAGCTG+AGG + chr2.1:35905097-35905116 MS.gene045793:CDS 45.0%
CCATCAGAAACACCAGTGTA+AGG - chr2.1:35903620-35903639 None:intergenic 45.0%
CGAATAGAATCCGGAGATTC+TGG + chr2.1:35904847-35904866 MS.gene045793:CDS 45.0%
CGTAATCTAGCTATGGCAAC+AGG + chr2.1:35904774-35904793 MS.gene045793:CDS 45.0%
CTTAGTCCAAGAGGCAAAAC+AGG - chr2.1:35905011-35905030 None:intergenic 45.0%
GAATCAAATGCTAGGGACTC+AGG - chr2.1:35903584-35903603 None:intergenic 45.0%
GCAACATGGCTGTTATCACT+GGG + chr2.1:35903468-35903487 MS.gene045793:CDS 45.0%
GCATTTGATTCCATTGGTGG+AGG + chr2.1:35903593-35903612 MS.gene045793:CDS 45.0%
GTTGCTCCGTAATCTAGCTA+TGG + chr2.1:35904767-35904786 MS.gene045793:CDS 45.0%
TCGCCTTGTACTCACTAACA+AGG - chr2.1:35904830-35904849 None:intergenic 45.0%
TTGATGTTATCTGGTCTCCC+CGG - chr2.1:35904918-35904937 None:intergenic 45.0%
TTGCCATGCCTGAATCATCA+AGG + chr2.1:35904383-35904402 MS.gene045793:intron 45.0%
TTGCTCACATTTCACCAGAC+CGG + chr2.1:35903684-35903703 MS.gene045793:CDS 45.0%
! ATGCCTTGATGATTCAGGCA+TGG - chr2.1:35904389-35904408 None:intergenic 45.0%
! CCTTACACTGGTGTTTCTGA+TGG + chr2.1:35903617-35903636 MS.gene045793:CDS 45.0%
!!! AATTATTATGTATTATATTT+TGG - chr2.1:35903901-35903920 None:intergenic 5.0%
AAACATGTGGGAGGCCTATG+GGG + chr2.1:35904027-35904046 MS.gene045793:CDS 50.0%
AGAAACATGTGGGAGGCCTA+TGG + chr2.1:35904025-35904044 MS.gene045793:CDS 50.0%
AGTCCAAGAGGCAAAACAGG+AGG - chr2.1:35905008-35905027 None:intergenic 50.0%
ATGTACTAGGCAGCCCTTTC+GGG + chr2.1:35904153-35904172 MS.gene045793:CDS 50.0%
CAGAGTCGACGTGCTTCATA+GGG + chr2.1:35903868-35903887 MS.gene045793:intron 50.0%
CTCGGCTATTAAGGAGTCTC+TGG - chr2.1:35904692-35904711 None:intergenic 50.0%
CTTGTTGAGGAGTTTGGCAC+TGG + chr2.1:35905068-35905087 MS.gene045793:CDS 50.0%
GAAACATGTGGGAGGCCTAT+GGG + chr2.1:35904026-35904045 MS.gene045793:CDS 50.0%
GTCCTGTAAGCCAGAATCTC+CGG - chr2.1:35904860-35904879 None:intergenic 50.0%
GTGCCAAACTCCTCAACAAG+AGG - chr2.1:35905068-35905087 None:intergenic 50.0%
GTGCCTCTTGTTGAGGAGTT+TGG + chr2.1:35905062-35905081 MS.gene045793:CDS 50.0%
GTGGATGTCGATCCTAACAC+TGG + chr2.1:35904188-35904207 MS.gene045793:CDS 50.0%
TAGGCCTCCCACATGTTTCT+TGG - chr2.1:35904025-35904044 None:intergenic 50.0%
! AGAGGCAAAACAGGAGGTAC+TGG - chr2.1:35905002-35905021 None:intergenic 50.0%
! AGATTAGACACGTACCGGTC+TGG - chr2.1:35903701-35903720 None:intergenic 50.0%
! GACCTCGAGGAACGAGTTTT+GGG + chr2.1:35904941-35904960 MS.gene045793:CDS 50.0%
! GTACCTCCTGTTTTGCCTCT+TGG + chr2.1:35905002-35905021 MS.gene045793:CDS 50.0%
!! AAAACAGGAGGTACTGGTGG+TGG - chr2.1:35904996-35905015 None:intergenic 50.0%
!! ATCCGGAGATTCTGGCTTAC+AGG + chr2.1:35904855-35904874 MS.gene045793:CDS 50.0%
ACGCCAGCAAGAAACCCGAA+AGG - chr2.1:35904170-35904189 None:intergenic 55.0%
AGAGGCTGTGCCTCTTGTTG+AGG + chr2.1:35905055-35905074 MS.gene045793:CDS 55.0%
AGTGTAAGGCCCTCCACCAA+TGG - chr2.1:35903606-35903625 None:intergenic 55.0%
ATTGGTGGAGGGCCTTACAC+TGG + chr2.1:35903605-35903624 MS.gene045793:CDS 55.0%
CACCCAAAACTCGTTCCTCG+AGG - chr2.1:35904946-35904965 None:intergenic 55.0%
CGCCAGCAAGAAACCCGAAA+GGG - chr2.1:35904169-35904188 None:intergenic 55.0%
GACTCAGGGCCTGTTAGTGA+TGG - chr2.1:35903569-35903588 None:intergenic 55.0%
GCAGAGTCGACGTGCTTCAT+AGG + chr2.1:35903867-35903886 MS.gene045793:intron 55.0%
GGGGTAGCAGTAAGCAGCAA+TGG + chr2.1:35904795-35904814 MS.gene045793:CDS 55.0%
TCAGGGCCTGTTAGTGATGG+TGG - chr2.1:35903566-35903585 None:intergenic 55.0%
! GGACCTCGAGGAACGAGTTT+TGG + chr2.1:35904940-35904959 MS.gene045793:CDS 55.0%
!! AGCCCTTTCGGGTTTCTTGC+TGG + chr2.1:35904164-35904183 MS.gene045793:CDS 55.0%
!! GGCAAAACAGGAGGTACTGG+TGG - chr2.1:35904999-35905018 None:intergenic 55.0%
!! TTTCGGGTTTCTTGCTGGCG+TGG + chr2.1:35904169-35904188 MS.gene045793:CDS 55.0%
!!! CTCGAGGAACGAGTTTTGGG+TGG + chr2.1:35904944-35904963 MS.gene045793:CDS 55.0%
!! ACAGGAGGTACTGGTGGTGG+TGG - chr2.1:35904993-35905012 None:intergenic 60.0%
!! GGTGGTGGTGGTGACCCAAA+AGG - chr2.1:35904981-35905000 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 35903461 35905175 35903461 ID=MS.gene045793
chr2.1 mRNA 35903461 35905175 35903461 ID=MS.gene045793.t1;Parent=MS.gene045793
chr2.1 exon 35903461 35903705 35903461 ID=MS.gene045793.t1.exon1;Parent=MS.gene045793.t1
chr2.1 CDS 35903461 35903705 35903461 ID=cds.MS.gene045793.t1;Parent=MS.gene045793.t1
chr2.1 exon 35903980 35904252 35903980 ID=MS.gene045793.t1.exon2;Parent=MS.gene045793.t1
chr2.1 CDS 35903980 35904252 35903980 ID=cds.MS.gene045793.t1;Parent=MS.gene045793.t1
chr2.1 exon 35904683 35905175 35904683 ID=MS.gene045793.t1.exon3;Parent=MS.gene045793.t1
chr2.1 CDS 35904683 35905175 35904683 ID=cds.MS.gene045793.t1;Parent=MS.gene045793.t1
Gene Sequence

>MS.gene045793

ATGTCTAGCAACATGGCTGTTATCACTGGGATCTTAATCTCCCTCATACTCTATTCATCATCTATAGTTGCCTATTGCAAATTACTAGACAGACTCTATCTTCCACCATCACTAACAGGCCCTGAGTCCCTAGCATTTGATTCCATTGGTGGAGGGCCTTACACTGGTGTTTCTGATGGAAGAATTCTAAAATATGATAAAGAACGTTCTAGTTTCCTTGAGTTTGCTCACATTTCACCAGACCGGTACGTGTCTAATCTAATGTGCAATGGATGTCTATTATTATATAGGTCATAATAAAATGGTTTGAATCTCCGTCAAGAAAGATGTTCACATTTAGTATTGAACTTGACCATATAGGTTTAATCTGCTCTAAACTTTGTCAGTGTTCATGTTTTTGACATTAGCAGAGTCGACGTGCTTCATAGGGTTTCACTCCAAAATATAATACATAATAATTCTTTTCATGTAATTATAGTCATAGTTGGTTAAGGTTAAACCATGTCATTGTTGTTACAGGAACAAAACAAATTGTGATGGAATTTCAGACTTCTCAGAACTCCAAGAAACATGTGGGAGGCCTATGGGGTTGAGTTTCAATTACAAGACGAAGGAATTATATATAGCTGATGCTTATTATGGACTTGTGAAGGTTTCTTATGATGGAGGTGCTGCAACACAACTTGTTTCTAATGTACTAGGCAGCCCTTTCGGGTTTCTTGCTGGCGTGGATGTCGATCCTAACACTGGAATCGTTTATTTCACGGAAGCTAGCTATTATCACAAGATCAGGTAAACCATTCTAATCTATCTCATGATTTTTCCATGTTTTTTCGCGTTGCTATACTAGCTGATGATGTTAGCAGTGTGAAATGAACAATGTGAATGAGTTTGTGAACTTTCTACGTTTGTGTGTCTCAATTTGCCATGCCTGAATCATCAAGGCATCATGATCTTGAGATTCAGCATACGTAACTTTTTAGACCTATAATATTCTCTTCTCAAAGCATGTATATTAAAGGAAATAATAGCTTATTCAATTTTTGCCTATACACTTTATAAACACAACGATAATGCTATGTTTCAACACTAAAATTCTTATGTTATTTTAATGATATGTTGCATTTTGAATTGATAGTAGTGAGTTCACACAGGAAATGTTCAATGTAGCAAATATTCTCTCTAGTCTTGGCCGATTAAAATTGTGACCTAAATTTTGCAGGGATCTCCAGAGACTCCTTAATAGCCGAGATATTTTTTCTGGAAGCCTGTTCAGATACAATCCAACAACGAAAGTAACCACATTGTTGCTCCGTAATCTAGCTATGGCAACAGGGGTAGCAGTAAGCAGCAATGGTTCATTTGTCCTTGTTAGTGAGTACAAGGCGAATAGAATCCGGAGATTCTGGCTTACAGGACCAAATGCATATACTTCAGATATATTCTTGTGGCTTCCGGGGAGACCAGATAACATCAAAAGGACCTCGAGGAACGAGTTTTGGGTGGCAGTGAATTATCCTTTTGGGTCACCACCACCACCAGTACCTCCTGTTTTGCCTCTTGGACTAAGAATCAATGAGCAAGGTTTAATTTTAGAGGCTGTGCCTCTTGTTGAGGAGTTTGGCACTGGATCAGTCAGTGAAGTTCATGAAGCTGAGGGAAAACTCTATGCTACATCGTTGCGTGATAGCTATGTTAACATTCTCACAGTATAG
Protein sequence

>MS.gene045793.t1

MSSNMAVITGILISLILYSSSIVAYCKLLDRLYLPPSLTGPESLAFDSIGGGPYTGVSDGRILKYDKERSSFLEFAHISPDRNKTNCDGISDFSELQETCGRPMGLSFNYKTKELYIADAYYGLVKVSYDGGAATQLVSNVLGSPFGFLAGVDVDPNTGIVYFTEASYYHKIRDLQRLLNSRDIFSGSLFRYNPTTKVTTLLLRNLAMATGVAVSSNGSFVLVSEYKANRIRRFWLTGPNAYTSDIFLWLPGRPDNIKRTSRNEFWVAVNYPFGSPPPPVPPVLPLGLRINEQGLILEAVPLVEEFGTGSVSEVHEAEGKLYATSLRDSYVNILTV