Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050115.t1 | RHN42410.1 | 96.4 | 332 | 10 | 1 | 1 | 330 | 1 | 332 | 5.90E-179 | 636.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050115.t1 | P94111 | 41.4 | 324 | 171 | 7 | 14 | 327 | 10 | 324 | 1.9e-61 | 237.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050115.t1 | A0A396GMZ3 | 96.4 | 332 | 10 | 1 | 1 | 330 | 1 | 332 | 4.2e-179 | 636.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050115 | MS.gene83236 | PPI |
| MS.gene050115 | MS.gene044501 | PPI |
| MS.gene050115 | MS.gene023328 | PPI |
| MS.gene044500 | MS.gene050115 | PPI |
| MS.gene050115 | MS.gene34908 | PPI |
| MS.gene050115 | MS.gene044500 | PPI |
| MS.gene050115 | MS.gene033013 | PPI |
| MS.gene050115 | MS.gene063529 | PPI |
| MS.gene050115 | MS.gene044502 | PPI |
| MS.gene050115 | MS.gene044490 | PPI |
| MS.gene08295 | MS.gene050115 | PPI |
| MS.gene050115 | MS.gene78183 | PPI |
| MS.gene023328 | MS.gene050115 | PPI |
| MS.gene83238 | MS.gene050115 | PPI |
| MS.gene050115 | MS.gene038798 | PPI |
| MS.gene050115 | MS.gene68975 | PPI |
| MS.gene050115 | MS.gene35843 | PPI |
| MS.gene050115 | MS.gene033012 | PPI |
| MS.gene050115 | MS.gene68976 | PPI |
| MS.gene050115 | MS.gene025506 | PPI |
| MS.gene050115 | MS.gene033026 | PPI |
| MS.gene050115 | MS.gene78185 | PPI |
| MS.gene050115 | MS.gene08297 | PPI |
| MS.gene050115 | MS.gene033015 | PPI |
| MS.gene050115 | MS.gene023327 | PPI |
| MS.gene050115 | MS.gene045793 | PPI |
| MS.gene050115 | MS.gene038810 | PPI |
| MS.gene050115 | MS.gene68977 | PPI |
| MS.gene050115 | MS.gene045791 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050115.t1 | MTR_4g112670 | 84.132 | 334 | 47 | 4 | 1 | 328 | 1 | 334 | 0.0 | 555 |
| MS.gene050115.t1 | MTR_4g112650 | 77.844 | 334 | 68 | 3 | 2 | 329 | 1 | 334 | 0.0 | 524 |
| MS.gene050115.t1 | MTR_4g112630 | 73.214 | 336 | 73 | 4 | 2 | 330 | 1 | 326 | 1.16e-173 | 484 |
| MS.gene050115.t1 | MTR_4g112620 | 69.162 | 334 | 64 | 5 | 1 | 329 | 1 | 300 | 2.72e-159 | 447 |
| MS.gene050115.t1 | MTR_2g058450 | 54.397 | 307 | 137 | 2 | 25 | 328 | 28 | 334 | 9.68e-109 | 320 |
| MS.gene050115.t1 | MTR_0003s0530 | 81.667 | 180 | 29 | 2 | 145 | 320 | 2 | 181 | 5.32e-99 | 291 |
| MS.gene050115.t1 | MTR_7g490330 | 38.298 | 329 | 183 | 4 | 4 | 329 | 13 | 324 | 1.20e-75 | 235 |
| MS.gene050115.t1 | MTR_7g490350 | 38.245 | 319 | 168 | 3 | 36 | 328 | 52 | 367 | 1.67e-74 | 234 |
| MS.gene050115.t1 | MTR_2g058410 | 53.017 | 232 | 106 | 1 | 101 | 329 | 1 | 232 | 3.43e-73 | 226 |
| MS.gene050115.t1 | MTR_7g090300 | 38.629 | 321 | 166 | 5 | 36 | 329 | 52 | 368 | 2.31e-71 | 226 |
| MS.gene050115.t1 | MTR_5g091980 | 39.645 | 338 | 172 | 8 | 2 | 329 | 7 | 322 | 5.93e-70 | 221 |
| MS.gene050115.t1 | MTR_4g050190 | 37.758 | 339 | 172 | 10 | 24 | 328 | 56 | 389 | 2.89e-68 | 219 |
| MS.gene050115.t1 | MTR_2g087780 | 36.686 | 338 | 177 | 9 | 24 | 328 | 60 | 393 | 6.10e-68 | 218 |
| MS.gene050115.t1 | MTR_7g090320 | 37.110 | 353 | 181 | 9 | 9 | 325 | 35 | 382 | 1.36e-66 | 214 |
| MS.gene050115.t1 | MTR_7g090310 | 37.812 | 320 | 164 | 6 | 36 | 320 | 57 | 376 | 1.09e-62 | 204 |
| MS.gene050115.t1 | MTR_2g099030 | 34.431 | 334 | 186 | 7 | 25 | 326 | 70 | 402 | 3.10e-60 | 198 |
| MS.gene050115.t1 | MTR_4g112840 | 80.000 | 100 | 18 | 1 | 171 | 268 | 56 | 155 | 1.07e-50 | 166 |
| MS.gene050115.t1 | MTR_5g077620 | 86.905 | 84 | 11 | 0 | 4 | 87 | 1 | 84 | 6.51e-46 | 153 |
| MS.gene050115.t1 | MTR_5g077620 | 90.698 | 43 | 4 | 0 | 274 | 316 | 76 | 118 | 4.32e-19 | 82.8 |
| MS.gene050115.t1 | MTR_8g074210 | 33.463 | 257 | 139 | 6 | 21 | 269 | 56 | 288 | 3.00e-34 | 129 |
| MS.gene050115.t1 | MTR_8g074270 | 34.043 | 235 | 129 | 6 | 37 | 269 | 78 | 288 | 7.88e-32 | 122 |
| MS.gene050115.t1 | MTR_8g074170 | 34.061 | 229 | 125 | 6 | 37 | 263 | 78 | 282 | 7.23e-31 | 120 |
| MS.gene050115.t1 | MTR_2g042430 | 31.878 | 229 | 127 | 9 | 38 | 263 | 77 | 279 | 3.51e-23 | 99.0 |
| MS.gene050115.t1 | MTR_2g042420 | 31.441 | 229 | 128 | 9 | 38 | 263 | 58 | 260 | 2.78e-22 | 96.3 |
| MS.gene050115.t1 | MTR_2g042370 | 35.220 | 159 | 98 | 4 | 108 | 263 | 112 | 268 | 1.02e-21 | 94.7 |
| MS.gene050115.t1 | MTR_2g058430 | 54.118 | 85 | 39 | 0 | 90 | 174 | 50 | 134 | 2.71e-21 | 92.0 |
| MS.gene050115.t1 | MTR_8g074320 | 37.795 | 127 | 72 | 4 | 98 | 219 | 95 | 219 | 2.82e-17 | 79.7 |
| MS.gene050115.t1 | MTR_1g075865 | 37.963 | 108 | 64 | 2 | 148 | 252 | 4 | 111 | 4.56e-17 | 77.0 |
| MS.gene050115.t1 | MTR_5g093640 | 45.918 | 98 | 7 | 2 | 233 | 330 | 52 | 103 | 1.27e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050115.t1 | AT1G74020 | 42.345 | 307 | 163 | 6 | 27 | 328 | 28 | 325 | 7.05e-74 | 231 |
| MS.gene050115.t1 | AT3G57030 | 39.875 | 321 | 162 | 5 | 36 | 328 | 55 | 372 | 2.62e-73 | 231 |
| MS.gene050115.t1 | AT1G74010 | 42.623 | 305 | 162 | 7 | 27 | 327 | 27 | 322 | 3.43e-72 | 227 |
| MS.gene050115.t1 | AT1G74000 | 40.391 | 307 | 169 | 6 | 27 | 328 | 30 | 327 | 2.42e-69 | 219 |
| MS.gene050115.t1 | AT3G57010 | 41.393 | 244 | 135 | 3 | 24 | 265 | 41 | 278 | 1.92e-67 | 216 |
| MS.gene050115.t1 | AT1G08470 | 36.747 | 332 | 175 | 8 | 28 | 328 | 60 | 387 | 3.37e-67 | 216 |
| MS.gene050115.t1 | AT5G22020 | 36.310 | 336 | 178 | 9 | 25 | 328 | 62 | 393 | 1.28e-66 | 214 |
| MS.gene050115.t1 | AT5G22020 | 36.310 | 336 | 178 | 9 | 25 | 328 | 62 | 393 | 1.28e-66 | 214 |
| MS.gene050115.t1 | AT5G22020 | 36.310 | 336 | 178 | 9 | 25 | 328 | 62 | 393 | 1.28e-66 | 214 |
| MS.gene050115.t1 | AT3G57020 | 38.934 | 244 | 141 | 2 | 24 | 265 | 40 | 277 | 8.08e-62 | 201 |
| MS.gene050115.t1 | AT2G41290 | 37.003 | 327 | 168 | 9 | 37 | 328 | 51 | 374 | 4.80e-60 | 197 |
| MS.gene050115.t1 | AT3G59530 | 38.554 | 249 | 145 | 4 | 28 | 269 | 75 | 322 | 6.95e-57 | 189 |
| MS.gene050115.t1 | AT3G59530 | 38.554 | 249 | 145 | 4 | 28 | 269 | 75 | 322 | 6.95e-57 | 189 |
| MS.gene050115.t1 | AT3G59530 | 38.554 | 249 | 145 | 4 | 28 | 269 | 75 | 322 | 6.95e-57 | 189 |
| MS.gene050115.t1 | AT3G57020 | 36.885 | 244 | 132 | 2 | 24 | 265 | 40 | 263 | 1.02e-56 | 187 |
| MS.gene050115.t1 | AT2G41300 | 33.442 | 308 | 171 | 6 | 42 | 321 | 83 | 384 | 8.54e-55 | 184 |
| MS.gene050115.t1 | AT3G51440 | 27.698 | 278 | 156 | 9 | 35 | 304 | 67 | 307 | 1.30e-25 | 105 |
| MS.gene050115.t1 | AT3G51430 | 30.303 | 231 | 136 | 7 | 38 | 265 | 70 | 278 | 3.09e-24 | 102 |
| MS.gene050115.t1 | AT3G51430 | 29.870 | 231 | 137 | 7 | 38 | 265 | 70 | 278 | 4.71e-24 | 101 |
| MS.gene050115.t1 | AT3G51420 | 27.476 | 313 | 184 | 12 | 35 | 326 | 67 | 357 | 3.46e-23 | 99.0 |
| MS.gene050115.t1 | AT3G51450 | 29.487 | 234 | 134 | 8 | 38 | 265 | 70 | 278 | 1.27e-22 | 97.4 |
Find 80 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTCAAGAGGCCAATTT+TGG | 0.142569 | 4.4:-17131647 | MS.gene050115:CDS |
| ATACAAAGAGTTTGGCTTAA+AGG | 0.191016 | 4.4:-17131732 | MS.gene050115:CDS |
| ATTGGTAACCATGTTGAATA+TGG | 0.244460 | 4.4:-17132852 | None:intergenic |
| GCAAAATGTGGAAGACCTTT+AGG | 0.259656 | 4.4:-17132199 | MS.gene050115:CDS |
| GAATTTCTCTTGATGTTATC+TGG | 0.262648 | 4.4:+17131663 | None:intergenic |
| TGCTTACTTGAGCTGGAAAT+TGG | 0.273371 | 4.4:+17131988 | None:intergenic |
| ATTTCAGTGAATAGTTATTT+AGG | 0.284952 | 4.4:-17131624 | MS.gene050115:CDS |
| TATTCACTGAAATCCAAAAT+TGG | 0.293830 | 4.4:+17131634 | None:intergenic |
| ATCAGCAAACTTAGTAGAAT+TGG | 0.304645 | 4.4:+17132063 | None:intergenic |
| CGGGCAAAATCGTCCGTCTT+GGG | 0.319086 | 4.4:+17131589 | None:intergenic |
| AGCTTGGATCATATCTTAAT+AGG | 0.319761 | 4.4:+17131859 | None:intergenic |
| CAAACAGAATACAAAGAGTT+TGG | 0.323375 | 4.4:-17131740 | MS.gene050115:CDS |
| CAAAATGTGGAAGACCTTTA+GGG | 0.331794 | 4.4:-17132198 | MS.gene050115:CDS |
| TACTAAGTTTGCTGATGGTT+TGG | 0.332839 | 4.4:-17132056 | MS.gene050115:CDS |
| GTATCTCTTGGTGCTGAGTA+TGG | 0.338967 | 4.4:-17131525 | MS.gene050115:CDS |
| GATATATTTATTTACCTGTT+TGG | 0.346046 | 4.4:+17132614 | None:intergenic |
| TACGTAGCTGATGCTTATTA+TGG | 0.348144 | 4.4:-17132145 | MS.gene050115:CDS |
| AATTATCTCCGCTCAGTGTC+TGG | 0.353838 | 4.4:+17131889 | None:intergenic |
| GGCAATCTTGCCGTGCCATC+TGG | 0.359780 | 4.4:-17131813 | MS.gene050115:CDS |
| GAATTATTCATGTTACTTGC+TGG | 0.369585 | 4.4:-17131690 | MS.gene050115:CDS |
| CTCAGTCACTCTGATTCCTC+CGG | 0.409015 | 4.4:+17131569 | None:intergenic |
| TGCTTATTATGGCCTTGTTA+AGG | 0.409890 | 4.4:-17132134 | MS.gene050115:CDS |
| TGAGTTACATTTGCTCCATC+AGG | 0.418940 | 4.4:+17132106 | None:intergenic |
| CCGGGCAAAATCGTCCGTCT+TGG | 0.422570 | 4.4:+17131588 | None:intergenic |
| AATTCTGATGAATTTGCTCT+TGG | 0.423029 | 4.4:+17131708 | None:intergenic |
| AGTGAGATTCAAGAGTATAA+TGG | 0.429524 | 4.4:-17131489 | MS.gene050115:CDS |
| TGCCTAGCAACACCGTCGTT+TGG | 0.431318 | 4.4:+17131832 | None:intergenic |
| ATCGTCCGTCTTGGGGATCC+TGG | 0.434461 | 4.4:+17131597 | None:intergenic |
| ATGCTTTCACTTCGCCAAAC+AGG | 0.434792 | 4.4:-17132628 | MS.gene050115:intron |
| GAAACTATGCTTACTTGAGC+TGG | 0.440498 | 4.4:+17131981 | None:intergenic |
| AAATATATTGGTCCAGATGA+AGG | 0.448616 | 4.4:-17132662 | MS.gene050115:CDS |
| TATTCCTTGAAACCTTCATC+TGG | 0.461685 | 4.4:+17132650 | None:intergenic |
| CTGGAAATTGGTGCTAGCTT+CGG | 0.463996 | 4.4:+17132000 | None:intergenic |
| CTTGTTAAGGTTAGTCCTGA+TGG | 0.465547 | 4.4:-17132121 | MS.gene050115:CDS |
| TCACTTGCATTTGATAGAAA+TGG | 0.471351 | 4.4:-17132725 | MS.gene050115:CDS |
| GCAAATGTAACTCAATTAGT+TGG | 0.471990 | 4.4:-17132097 | MS.gene050115:CDS |
| TGGTCCAGATGAAGGTTTCA+AGG | 0.472200 | 4.4:-17132654 | MS.gene050115:CDS |
| CCTTATGTTGGCTCCTCTGA+TGG | 0.473712 | 4.4:-17132695 | MS.gene050115:CDS |
| ACCGTCGTTTGGTTTGAGCT+TGG | 0.476304 | 4.4:+17131843 | None:intergenic |
| TACTCTTGAATCTCACTAGC+TGG | 0.484772 | 4.4:+17131495 | None:intergenic |
| GGAATCAGAGTGACTGAGAA+TGG | 0.488784 | 4.4:-17131564 | MS.gene050115:CDS |
| TTAGTAGAATTGGCTTGTGC+AGG | 0.492686 | 4.4:+17132073 | None:intergenic |
| ACACTGAGCGGAGATAATTC+AGG | 0.493415 | 4.4:-17131885 | MS.gene050115:CDS |
| TGCTAGCATAAGAAGCAAGC+AGG | 0.502038 | 4.4:+17131448 | None:intergenic |
| TATAATGGAACGCTCTATAG+TGG | 0.504379 | 4.4:-17131474 | MS.gene050115:CDS |
| CCATCAGAGGAGCCAACATA+AGG | 0.508307 | 4.4:+17132695 | None:intergenic |
| TTGGATGTAGATTCCGACAC+TGG | 0.519237 | 4.4:-17132037 | MS.gene050115:CDS |
| CTATCAAATGCAAGTGACTC+AGG | 0.521823 | 4.4:+17132731 | None:intergenic |
| GGGCAAAATCGTCCGTCTTG+GGG | 0.530545 | 4.4:+17131590 | None:intergenic |
| CTTGCATTTGATAGAAATGG+TGG | 0.539336 | 4.4:-17132722 | MS.gene050115:CDS |
| AAAATAAACGATTCCAGTGT+CGG | 0.540943 | 4.4:+17132024 | None:intergenic |
| AGTGACTCAGGACCCGTCAC+TGG | 0.541604 | 4.4:+17132743 | None:intergenic |
| TCAGTCACTCTGATTCCTCC+GGG | 0.543329 | 4.4:+17131570 | None:intergenic |
| AACCAAACGACGGTGTTGCT+AGG | 0.548086 | 4.4:-17131834 | MS.gene050115:CDS |
| GGTGTGGCAGTAAGCAAAGA+TGG | 0.552392 | 4.4:-17131792 | MS.gene050115:CDS |
| TTGCTTACTGCCACACCAGA+TGG | 0.555964 | 4.4:+17131798 | None:intergenic |
| TACTGCCACACCAGATGGCA+CGG | 0.561460 | 4.4:+17131803 | None:intergenic |
| TGATTGAAACTCAACCCTAA+AGG | 0.563318 | 4.4:+17132184 | None:intergenic |
| TTGAGTTTCAATCATCAGAC+GGG | 0.566766 | 4.4:-17132175 | MS.gene050115:CDS |
| AATTCTACTAAGTTTGCTGA+TGG | 0.568034 | 4.4:-17132061 | MS.gene050115:CDS |
| TCAGCTACCATCACCAGTGA+CGG | 0.576414 | 4.4:-17132756 | MS.gene050115:CDS |
| TCAGGACCCGTCACTGGTGA+TGG | 0.579014 | 4.4:+17132749 | None:intergenic |
| GCTAGCATAAGAAGCAAGCA+GGG | 0.580108 | 4.4:+17131449 | None:intergenic |
| GTCCGTCTTGGGGATCCTGG+TGG | 0.581851 | 4.4:+17131600 | None:intergenic |
| AGGAACAAGACAATATGTGA+TGG | 0.582363 | 4.4:-17132247 | MS.gene050115:CDS |
| TCTTGCCGTGCCATCTGGTG+TGG | 0.588262 | 4.4:-17131808 | MS.gene050115:CDS |
| GTTGAGTTTCAATCATCAGA+CGG | 0.594215 | 4.4:-17132176 | MS.gene050115:CDS |
| GGAACAAGACAATATGTGAT+GGG | 0.595406 | 4.4:-17132246 | MS.gene050115:CDS |
| CAGCTACCATCACCAGTGAC+GGG | 0.598096 | 4.4:-17132755 | MS.gene050115:CDS |
| AATAGTTATTTAGGTCCACC+AGG | 0.607064 | 4.4:-17131615 | MS.gene050115:CDS |
| TCAGCAGTCCAAGCAAAATG+TGG | 0.607995 | 4.4:-17132211 | MS.gene050115:CDS |
| AATGGTGGAGGACCTTATGT+TGG | 0.609545 | 4.4:-17132707 | MS.gene050115:CDS |
| GCATTTGATAGAAATGGTGG+AGG | 0.613633 | 4.4:-17132719 | MS.gene050115:CDS |
| AACATCAAGAGAAATTCAAG+AGG | 0.624735 | 4.4:-17131657 | MS.gene050115:CDS |
| CATCAGGACTAACCTTAACA+AGG | 0.625058 | 4.4:+17132122 | None:intergenic |
| GTCCACCAGGATCCCCAAGA+CGG | 0.653542 | 4.4:-17131602 | MS.gene050115:CDS |
| AAACATTGCCATATTCAACA+TGG | 0.672591 | 4.4:+17132844 | None:intergenic |
| AGGGATTTCCAGACACTGAG+CGG | 0.682326 | 4.4:-17131897 | MS.gene050115:CDS |
| AGTAAGTAAAATACTCTAGG+GGG | 0.687710 | 4.4:+17131419 | None:intergenic |
| TCCAAGCTCAAACCAAACGA+CGG | 0.707803 | 4.4:-17131844 | MS.gene050115:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTTTTTACAAAATAAA+CGG | + | chr4.4:17131741-17131760 | None:intergenic | 10.0% |
| !!! | AATGAATTCCTTTTTTATTT+TGG | - | chr4.4:17132003-17132022 | MS.gene050115:CDS | 15.0% |
| !!! | GGAAGAATTTTTAAATATAT+TGG | - | chr4.4:17131602-17131621 | MS.gene050115:CDS | 15.0% |
| !!! | TTTTTTTTTTTTTGTGTGAT+CGG | - | chr4.4:17131783-17131802 | MS.gene050115:CDS | 15.0% |
| !! | ATGTTTATATAGAAAACACT+GGG | - | chr4.4:17131908-17131927 | MS.gene050115:intron | 20.0% |
| !! | ATTTCAGTGAATAGTTATTT+AGG | - | chr4.4:17132652-17132671 | MS.gene050115:CDS | 20.0% |
| !! | GATATATTTATTTACCTGTT+TGG | + | chr4.4:17131665-17131684 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGTGTGATC+GGG | - | chr4.4:17131784-17131803 | MS.gene050115:CDS | 20.0% |
| ! | AAACATGAAAAGAAGATGAT+AGG | + | chr4.4:17131894-17131913 | None:intergenic | 25.0% |
| ! | CATGTTTATATAGAAAACAC+TGG | - | chr4.4:17131907-17131926 | MS.gene050115:intron | 25.0% |
| ! | TATTCACTGAAATCCAAAAT+TGG | + | chr4.4:17132645-17132664 | None:intergenic | 25.0% |
| ! | TTAGTATTGTAATGCAGAAT+TGG | + | chr4.4:17132334-17132353 | None:intergenic | 25.0% |
| ! | TTCCTGAACCAAAATAAAAA+AGG | + | chr4.4:17132014-17132033 | None:intergenic | 25.0% |
| ! | TTTAAAAATTCTTCCATCAG+AGG | + | chr4.4:17131597-17131616 | None:intergenic | 25.0% |
| !! | ATTTTACAGATTGTATCTCT+TGG | - | chr4.4:17132739-17132758 | MS.gene050115:CDS | 25.0% |
| !!! | TTCCTTTTTTATTTTGGTTC+AGG | - | chr4.4:17132009-17132028 | MS.gene050115:CDS | 25.0% |
| AAAATAAACGATTCCAGTGT+CGG | + | chr4.4:17132255-17132274 | None:intergenic | 30.0% | |
| AAATATATTGGTCCAGATGA+AGG | - | chr4.4:17131614-17131633 | MS.gene050115:CDS | 30.0% | |
| AACATCAAGAGAAATTCAAG+AGG | - | chr4.4:17132619-17132638 | MS.gene050115:intron | 30.0% | |
| AGCTTGGATCATATCTTAAT+AGG | + | chr4.4:17132420-17132439 | None:intergenic | 30.0% | |
| ATCAGCAAACTTAGTAGAAT+TGG | + | chr4.4:17132216-17132235 | None:intergenic | 30.0% | |
| ATGATAGGCTAAATTTCTTG+AGG | + | chr4.4:17131879-17131898 | None:intergenic | 30.0% | |
| CAAACAGAATACAAAGAGTT+TGG | - | chr4.4:17132536-17132555 | MS.gene050115:intron | 30.0% | |
| GAATTTCTCTTGATGTTATC+TGG | + | chr4.4:17132616-17132635 | None:intergenic | 30.0% | |
| GCAAATGTAACTCAATTAGT+TGG | - | chr4.4:17132179-17132198 | MS.gene050115:CDS | 30.0% | |
| TCACTTGCATTTGATAGAAA+TGG | - | chr4.4:17131551-17131570 | MS.gene050115:CDS | 30.0% | |
| TGAATCTAGCTAGCTATAAT+AGG | + | chr4.4:17131696-17131715 | None:intergenic | 30.0% | |
| TGATAGGCTAAATTTCTTGA+GGG | + | chr4.4:17131878-17131897 | None:intergenic | 30.0% | |
| ! | AATTCTGATGAATTTGCTCT+TGG | + | chr4.4:17132571-17132590 | None:intergenic | 30.0% |
| ! | AGTGAGATTCAAGAGTATAA+TGG | - | chr4.4:17132787-17132806 | MS.gene050115:CDS | 30.0% |
| ! | ATACAAAGAGTTTGGCTTAA+AGG | - | chr4.4:17132544-17132563 | MS.gene050115:intron | 30.0% |
| ! | ATGTCACTTGGTTAATTGTA+GGG | - | chr4.4:17132360-17132379 | MS.gene050115:intron | 30.0% |
| ! | GAATTATTCATGTTACTTGC+TGG | - | chr4.4:17132586-17132605 | MS.gene050115:intron | 30.0% |
| !! | AATTCTACTAAGTTTGCTGA+TGG | - | chr4.4:17132215-17132234 | MS.gene050115:CDS | 30.0% |
| AATAGTTATTTAGGTCCACC+AGG | - | chr4.4:17132661-17132680 | MS.gene050115:CDS | 35.0% | |
| AGGAACAAGACAATATGTGA+TGG | - | chr4.4:17132029-17132048 | MS.gene050115:CDS | 35.0% | |
| CAAAATGTGGAAGACCTTTA+GGG | - | chr4.4:17132078-17132097 | MS.gene050115:CDS | 35.0% | |
| CTTGCATTTGATAGAAATGG+TGG | - | chr4.4:17131554-17131573 | MS.gene050115:CDS | 35.0% | |
| GGAACAAGACAATATGTGAT+GGG | - | chr4.4:17132030-17132049 | MS.gene050115:CDS | 35.0% | |
| GTTGAGTTTCAATCATCAGA+CGG | - | chr4.4:17132100-17132119 | MS.gene050115:CDS | 35.0% | |
| TACGTAGCTGATGCTTATTA+TGG | - | chr4.4:17132131-17132150 | MS.gene050115:CDS | 35.0% | |
| TACTAAATGTGCATGTCACT+TGG | - | chr4.4:17132348-17132367 | MS.gene050115:intron | 35.0% | |
| TATTCCTTGAAACCTTCATC+TGG | + | chr4.4:17131629-17131648 | None:intergenic | 35.0% | |
| TGATTGAAACTCAACCCTAA+AGG | + | chr4.4:17132095-17132114 | None:intergenic | 35.0% | |
| TTGAGTTTCAATCATCAGAC+GGG | - | chr4.4:17132101-17132120 | MS.gene050115:CDS | 35.0% | |
| ! | CATGTCACTTGGTTAATTGT+AGG | - | chr4.4:17132359-17132378 | MS.gene050115:intron | 35.0% |
| ! | GAAATTCAAGAGGCCAATTT+TGG | - | chr4.4:17132629-17132648 | MS.gene050115:CDS | 35.0% |
| ! | TATAATGGAACGCTCTATAG+TGG | - | chr4.4:17132802-17132821 | MS.gene050115:CDS | 35.0% |
| !! | TACTAAGTTTGCTGATGGTT+TGG | - | chr4.4:17132220-17132239 | MS.gene050115:CDS | 35.0% |
| !! | TGCTTATTATGGCCTTGTTA+AGG | - | chr4.4:17132142-17132161 | MS.gene050115:CDS | 35.0% |
| CATCAGGACTAACCTTAACA+AGG | + | chr4.4:17132157-17132176 | None:intergenic | 40.0% | |
| CTATCAAATGCAAGTGACTC+AGG | + | chr4.4:17131548-17131567 | None:intergenic | 40.0% | |
| GAAACTATGCTTACTTGAGC+TGG | + | chr4.4:17132298-17132317 | None:intergenic | 40.0% | |
| GCAAAATGTGGAAGACCTTT+AGG | - | chr4.4:17132077-17132096 | MS.gene050115:CDS | 40.0% | |
| GCATTTGATAGAAATGGTGG+AGG | - | chr4.4:17131557-17131576 | MS.gene050115:CDS | 40.0% | |
| TACTCTTGAATCTCACTAGC+TGG | + | chr4.4:17132784-17132803 | None:intergenic | 40.0% | |
| TGAGTTACATTTGCTCCATC+AGG | + | chr4.4:17132173-17132192 | None:intergenic | 40.0% | |
| TGCTTACTTGAGCTGGAAAT+TGG | + | chr4.4:17132291-17132310 | None:intergenic | 40.0% | |
| ! | AAGGTCTTCCACATTTTGCT+TGG | + | chr4.4:17132076-17132095 | None:intergenic | 40.0% |
| ! | CTTGTTAAGGTTAGTCCTGA+TGG | - | chr4.4:17132155-17132174 | MS.gene050115:CDS | 40.0% |
| !! | TTAGTAGAATTGGCTTGTGC+AGG | + | chr4.4:17132206-17132225 | None:intergenic | 40.0% |
| AATTATCTCCGCTCAGTGTC+TGG | + | chr4.4:17132390-17132409 | None:intergenic | 45.0% | |
| ACACTGAGCGGAGATAATTC+AGG | - | chr4.4:17132391-17132410 | MS.gene050115:intron | 45.0% | |
| ATGCTTTCACTTCGCCAAAC+AGG | - | chr4.4:17131648-17131667 | MS.gene050115:CDS | 45.0% | |
| GCTAGCATAAGAAGCAAGCA+GGG | + | chr4.4:17132830-17132849 | None:intergenic | 45.0% | |
| GGAATCAGAGTGACTGAGAA+TGG | - | chr4.4:17132712-17132731 | MS.gene050115:CDS | 45.0% | |
| TCAGCAGTCCAAGCAAAATG+TGG | - | chr4.4:17132065-17132084 | MS.gene050115:CDS | 45.0% | |
| TCCAAGCTCAAACCAAACGA+CGG | - | chr4.4:17132432-17132451 | MS.gene050115:intron | 45.0% | |
| TGCTAGCATAAGAAGCAAGC+AGG | + | chr4.4:17132831-17132850 | None:intergenic | 45.0% | |
| TGGTCCAGATGAAGGTTTCA+AGG | - | chr4.4:17131622-17131641 | MS.gene050115:CDS | 45.0% | |
| TTGGATGTAGATTCCGACAC+TGG | - | chr4.4:17132239-17132258 | MS.gene050115:CDS | 45.0% | |
| ! | AATGGTGGAGGACCTTATGT+TGG | - | chr4.4:17131569-17131588 | MS.gene050115:CDS | 45.0% |
| !! | CTGGAAATTGGTGCTAGCTT+CGG | + | chr4.4:17132279-17132298 | None:intergenic | 45.0% |
| !! | GTATCTCTTGGTGCTGAGTA+TGG | - | chr4.4:17132751-17132770 | MS.gene050115:CDS | 45.0% |
| AGGGATTTCCAGACACTGAG+CGG | - | chr4.4:17132379-17132398 | MS.gene050115:intron | 50.0% | |
| CCATCAGAGGAGCCAACATA+AGG | + | chr4.4:17131584-17131603 | None:intergenic | 50.0% | |
| CTCAGTCACTCTGATTCCTC+CGG | + | chr4.4:17132710-17132729 | None:intergenic | 50.0% | |
| CTGAGGCTATTCCATCGAGT+CGG | - | chr4.4:17131826-17131845 | MS.gene050115:CDS | 50.0% | |
| GGTGTGGCAGTAAGCAAAGA+TGG | - | chr4.4:17132484-17132503 | MS.gene050115:intron | 50.0% | |
| TCAGCTACCATCACCAGTGA+CGG | - | chr4.4:17131520-17131539 | MS.gene050115:CDS | 50.0% | |
| TCAGTCACTCTGATTCCTCC+GGG | + | chr4.4:17132709-17132728 | None:intergenic | 50.0% | |
| TGAGGCTATTCCATCGAGTC+GGG | - | chr4.4:17131827-17131846 | MS.gene050115:CDS | 50.0% | |
| TTGCTTACTGCCACACCAGA+TGG | + | chr4.4:17132481-17132500 | None:intergenic | 50.0% | |
| !! | AACCAAACGACGGTGTTGCT+AGG | - | chr4.4:17132442-17132461 | MS.gene050115:intron | 50.0% |
| !! | ACCGTCGTTTGGTTTGAGCT+TGG | + | chr4.4:17132436-17132455 | None:intergenic | 50.0% |
| !! | CCTTATGTTGGCTCCTCTGA+TGG | - | chr4.4:17131581-17131600 | MS.gene050115:CDS | 50.0% |
| ATCGAGTCGGGTGGGATCTA+TGG | - | chr4.4:17131839-17131858 | MS.gene050115:CDS | 55.0% | |
| CAGCTACCATCACCAGTGAC+GGG | - | chr4.4:17131521-17131540 | MS.gene050115:CDS | 55.0% | |
| CGGGCAAAATCGTCCGTCTT+GGG | + | chr4.4:17132690-17132709 | None:intergenic | 55.0% | |
| GCTATTCCATCGAGTCGGGT+GGG | - | chr4.4:17131831-17131850 | MS.gene050115:CDS | 55.0% | |
| GGGCAAAATCGTCCGTCTTG+GGG | + | chr4.4:17132689-17132708 | None:intergenic | 55.0% | |
| TACTGCCACACCAGATGGCA+CGG | + | chr4.4:17132476-17132495 | None:intergenic | 55.0% | |
| TCGAGTCGGGTGGGATCTAT+GGG | - | chr4.4:17131840-17131859 | MS.gene050115:CDS | 55.0% | |
| TGCCTAGCAACACCGTCGTT+TGG | + | chr4.4:17132447-17132466 | None:intergenic | 55.0% | |
| ! | ATAGATCCCACCCGACTCGA+TGG | + | chr4.4:17131840-17131859 | None:intergenic | 55.0% |
| ! | CCAAGACGGACGATTTTGCC+CGG | - | chr4.4:17132688-17132707 | MS.gene050115:CDS | 55.0% |
| AGTGACTCAGGACCCGTCAC+TGG | + | chr4.4:17131536-17131555 | None:intergenic | 60.0% | |
| ATCGTCCGTCTTGGGGATCC+TGG | + | chr4.4:17132682-17132701 | None:intergenic | 60.0% | |
| CCGGGCAAAATCGTCCGTCT+TGG | + | chr4.4:17132691-17132710 | None:intergenic | 60.0% | |
| GGCAATCTTGCCGTGCCATC+TGG | - | chr4.4:17132463-17132482 | MS.gene050115:intron | 60.0% | |
| GGCTATTCCATCGAGTCGGG+TGG | - | chr4.4:17131830-17131849 | MS.gene050115:CDS | 60.0% | |
| GTCCACCAGGATCCCCAAGA+CGG | - | chr4.4:17132674-17132693 | MS.gene050115:CDS | 60.0% | |
| TCAGGACCCGTCACTGGTGA+TGG | + | chr4.4:17131530-17131549 | None:intergenic | 60.0% | |
| TCTTGCCGTGCCATCTGGTG+TGG | - | chr4.4:17132468-17132487 | MS.gene050115:intron | 60.0% | |
| ! | AGACGGACGATTTTGCCCGG+AGG | - | chr4.4:17132691-17132710 | MS.gene050115:CDS | 60.0% |
| GTCCGTCTTGGGGATCCTGG+TGG | + | chr4.4:17132679-17132698 | None:intergenic | 65.0% | |
| TCCTCTGCGCGCGATTGCTG+AGG | - | chr4.4:17131809-17131828 | MS.gene050115:CDS | 65.0% | |
| GCCTCAGCAATCGCGCGCAG+AGG | + | chr4.4:17131813-17131832 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17131434 | 17132864 | 17131434 | ID=MS.gene050115 |
| chr4.4 | mRNA | 17131434 | 17132864 | 17131434 | ID=MS.gene050115.t1;Parent=MS.gene050115 |
| chr4.4 | exon | 17132629 | 17132864 | 17132629 | ID=MS.gene050115.t1.exon1;Parent=MS.gene050115.t1 |
| chr4.4 | CDS | 17132629 | 17132864 | 17132629 | ID=cds.MS.gene050115.t1;Parent=MS.gene050115.t1 |
| chr4.4 | exon | 17131995 | 17132267 | 17131995 | ID=MS.gene050115.t1.exon2;Parent=MS.gene050115.t1 |
| chr4.4 | CDS | 17131995 | 17132267 | 17131995 | ID=cds.MS.gene050115.t1;Parent=MS.gene050115.t1 |
| chr4.4 | exon | 17131434 | 17131917 | 17131434 | ID=MS.gene050115.t1.exon3;Parent=MS.gene050115.t1 |
| chr4.4 | CDS | 17131434 | 17131917 | 17131434 | ID=cds.MS.gene050115.t1;Parent=MS.gene050115.t1 |
| Gene Sequence |
| Protein sequence |
