Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046090.t1 | GAU17568.1 | 64.1 | 334 | 105 | 5 | 1 | 330 | 404 | 726 | 2.70E-107 | 398.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046090.t1 | Q9FPT1 | 43.8 | 130 | 70 | 3 | 10 | 138 | 56 | 183 | 4.8e-20 | 100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046090.t1 | A0A392MFG0 | 65.3 | 334 | 101 | 5 | 1 | 330 | 4 | 326 | 2.9e-111 | 411.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046090.t1 | MTR_7g107200 | 45.333 | 375 | 159 | 6 | 1 | 329 | 1 | 375 | 3.10e-106 | 315 |
| MS.gene046090.t1 | MTR_1g042160 | 49.701 | 334 | 136 | 8 | 1 | 328 | 1 | 308 | 1.21e-98 | 294 |
| MS.gene046090.t1 | MTR_7g107160 | 52.802 | 339 | 121 | 12 | 9 | 330 | 129 | 445 | 2.50e-96 | 293 |
| MS.gene046090.t1 | MTR_7g107160 | 48.837 | 129 | 46 | 3 | 66 | 174 | 1 | 129 | 9.25e-30 | 118 |
| MS.gene046090.t1 | MTR_8g011730 | 36.798 | 356 | 175 | 11 | 9 | 329 | 13 | 353 | 6.77e-62 | 201 |
| MS.gene046090.t1 | MTR_7g107170 | 54.037 | 161 | 66 | 1 | 168 | 328 | 111 | 263 | 1.97e-49 | 166 |
| MS.gene046090.t1 | MTR_7g107170 | 73.563 | 87 | 23 | 0 | 233 | 319 | 1 | 87 | 9.57e-33 | 122 |
| MS.gene046090.t1 | MTR_2g034780 | 36.747 | 166 | 102 | 1 | 158 | 323 | 99 | 261 | 5.13e-29 | 113 |
| MS.gene046090.t1 | MTR_3g079840 | 38.732 | 142 | 81 | 4 | 1 | 138 | 45 | 184 | 8.64e-24 | 102 |
| MS.gene046090.t1 | MTR_3g079840 | 38.732 | 142 | 81 | 4 | 1 | 138 | 44 | 183 | 8.96e-24 | 102 |
| MS.gene046090.t1 | MTR_5g086700 | 36.765 | 136 | 83 | 3 | 4 | 138 | 55 | 188 | 2.78e-23 | 101 |
| MS.gene046090.t1 | MTR_5g086700 | 36.765 | 136 | 83 | 3 | 4 | 138 | 55 | 188 | 2.94e-23 | 101 |
| MS.gene046090.t1 | MTR_1g041240 | 39.695 | 131 | 75 | 3 | 10 | 139 | 58 | 185 | 2.71e-22 | 98.2 |
| MS.gene046090.t1 | MTR_1g041240 | 39.695 | 131 | 75 | 3 | 10 | 139 | 59 | 186 | 2.71e-22 | 98.2 |
| MS.gene046090.t1 | MTR_1g041240 | 39.695 | 131 | 75 | 3 | 10 | 139 | 57 | 184 | 2.74e-22 | 98.2 |
| MS.gene046090.t1 | MTR_5g091180 | 34.228 | 149 | 91 | 4 | 1 | 145 | 34 | 179 | 4.22e-21 | 94.7 |
| MS.gene046090.t1 | MTR_5g091450 | 34.921 | 126 | 80 | 2 | 10 | 134 | 33 | 157 | 1.25e-20 | 93.2 |
| MS.gene046090.t1 | MTR_5g091550 | 33.071 | 127 | 82 | 3 | 9 | 134 | 18 | 142 | 6.74e-14 | 72.8 |
| MS.gene046090.t1 | MTR_5g091550 | 33.071 | 127 | 82 | 3 | 9 | 134 | 18 | 142 | 6.80e-14 | 72.8 |
| MS.gene046090.t1 | MTR_3g106700 | 34.043 | 141 | 83 | 4 | 10 | 140 | 406 | 546 | 4.70e-13 | 70.9 |
| MS.gene046090.t1 | MTR_1g073800 | 32.824 | 131 | 83 | 5 | 10 | 138 | 49 | 176 | 3.33e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046090.t1 | AT5G06600 | 42.254 | 142 | 76 | 4 | 1 | 138 | 44 | 183 | 2.35e-24 | 104 |
| MS.gene046090.t1 | AT5G06600 | 42.254 | 142 | 76 | 4 | 1 | 138 | 44 | 183 | 2.44e-24 | 104 |
| MS.gene046090.t1 | AT5G06600 | 42.254 | 142 | 76 | 4 | 1 | 138 | 43 | 182 | 2.48e-24 | 104 |
| MS.gene046090.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 55 | 182 | 1.54e-23 | 102 |
| MS.gene046090.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 55 | 182 | 1.54e-23 | 102 |
| MS.gene046090.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 54 | 181 | 1.57e-23 | 102 |
| MS.gene046090.t1 | AT3G11910 | 43.077 | 130 | 71 | 3 | 10 | 138 | 54 | 181 | 1.57e-23 | 102 |
| MS.gene046090.t1 | AT3G58340 | 25.430 | 291 | 167 | 10 | 5 | 268 | 3 | 270 | 1.39e-15 | 76.6 |
| MS.gene046090.t1 | AT3G58340 | 24.585 | 301 | 167 | 10 | 5 | 268 | 3 | 280 | 1.37e-14 | 73.9 |
| MS.gene046090.t1 | AT3G58220 | 25.352 | 213 | 141 | 6 | 11 | 218 | 13 | 212 | 2.99e-13 | 69.7 |
| MS.gene046090.t1 | AT3G44790 | 24.803 | 254 | 176 | 7 | 9 | 258 | 4 | 246 | 4.81e-13 | 69.3 |
| MS.gene046090.t1 | AT3G58370 | 27.232 | 224 | 134 | 9 | 1 | 218 | 1 | 201 | 2.05e-12 | 67.4 |
| MS.gene046090.t1 | AT3G58220 | 21.993 | 291 | 182 | 6 | 11 | 259 | 13 | 300 | 2.49e-12 | 67.4 |
| MS.gene046090.t1 | AT3G58360 | 26.042 | 192 | 121 | 6 | 9 | 199 | 7 | 178 | 3.08e-12 | 66.6 |
| MS.gene046090.t1 | AT2G25320 | 32.278 | 158 | 96 | 5 | 10 | 157 | 404 | 560 | 8.19e-12 | 67.0 |
| MS.gene046090.t1 | AT2G25320 | 32.278 | 158 | 96 | 5 | 10 | 157 | 405 | 561 | 8.19e-12 | 67.0 |
| MS.gene046090.t1 | AT3G58220 | 26.519 | 181 | 131 | 2 | 11 | 190 | 13 | 192 | 1.77e-11 | 65.1 |
| MS.gene046090.t1 | AT2G25320 | 32.278 | 158 | 96 | 5 | 10 | 157 | 405 | 561 | 1.78e-11 | 65.9 |
| MS.gene046090.t1 | AT3G58210 | 32.061 | 131 | 86 | 3 | 8 | 136 | 6 | 135 | 2.35e-11 | 64.3 |
| MS.gene046090.t1 | AT3G58220 | 26.519 | 181 | 131 | 2 | 11 | 190 | 13 | 192 | 3.10e-11 | 64.3 |
| MS.gene046090.t1 | AT3G58270 | 33.077 | 130 | 84 | 3 | 8 | 136 | 6 | 133 | 4.56e-11 | 63.5 |
| MS.gene046090.t1 | AT3G58270 | 33.077 | 130 | 84 | 3 | 8 | 136 | 6 | 133 | 4.56e-11 | 63.5 |
| MS.gene046090.t1 | AT3G58270 | 33.077 | 130 | 84 | 3 | 8 | 136 | 6 | 133 | 4.56e-11 | 63.5 |
| MS.gene046090.t1 | AT3G58220 | 29.688 | 128 | 86 | 3 | 11 | 135 | 13 | 139 | 7.51e-11 | 62.0 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAAGTAAGGATTATT+TGG | 0.155785 | 8.4:+45416180 | MS.gene046090:CDS |
| GTACACTGCTAATATGTTTC+AGG | 0.185039 | 8.4:+45415127 | MS.gene046090:CDS |
| CCAAAGTCTCGACCACATTT+TGG | 0.217526 | 8.4:-45416384 | None:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.219404 | 8.4:-45416634 | None:intergenic |
| TTCACAATAAACCCTCTTTC+AGG | 0.251806 | 8.4:-45416238 | None:intergenic |
| TTTGGAAAAGAACAGTTATT+TGG | 0.252160 | 8.4:+45416681 | MS.gene046090:CDS |
| CTCTCACCTTTCTTGTCTTA+AGG | 0.269117 | 8.4:-45416558 | None:intergenic |
| GAACTTCTCTCACTTGAATA+AGG | 0.276609 | 8.4:+45414912 | MS.gene046090:CDS |
| CGTTGGCCTTCTTCTAGTTC+TGG | 0.287736 | 8.4:-45416361 | None:intergenic |
| GAATGGGCGTTCACCGCTTT+GGG | 0.323269 | 8.4:+45416520 | MS.gene046090:CDS |
| GGAATGGGCGTTCACCGCTT+TGG | 0.324343 | 8.4:+45416519 | MS.gene046090:CDS |
| ATGACGTTATCTGAGCTTCT+TGG | 0.325012 | 8.4:+45416214 | MS.gene046090:CDS |
| AGTAAGGATTATTTGGGTTT+CGG | 0.339740 | 8.4:+45416187 | MS.gene046090:CDS |
| TTCCTCTAGTAATGGAATAA+AGG | 0.345498 | 8.4:-45416437 | None:intergenic |
| TGCTCTGAGCCTTTCATCCT+TGG | 0.354077 | 8.4:+45414946 | MS.gene046090:CDS |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 8.4:+45416256 | MS.gene046090:CDS |
| GCCTTGTGTTCAATCTGCTT+TGG | 0.362659 | 8.4:+45416663 | MS.gene046090:CDS |
| GGATGATTTGTCTGTATCAA+TGG | 0.368177 | 8.4:+45415060 | MS.gene046090:intron |
| CCAAAATGTGGTCGAGACTT+TGG | 0.387611 | 8.4:+45416384 | MS.gene046090:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.389237 | 8.4:+45416504 | MS.gene046090:CDS |
| AATGCAAGTAAGGATTATTT+GGG | 0.389997 | 8.4:+45416181 | MS.gene046090:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.401616 | 8.4:+45416804 | MS.gene046090:CDS |
| GATGATTTGTCTGTATCAAT+GGG | 0.407748 | 8.4:+45415061 | MS.gene046090:CDS |
| CTTTGAGTTCAATGCAAGTA+AGG | 0.409663 | 8.4:+45416171 | MS.gene046090:CDS |
| CCTTCTTCTAGTTCTGGCTC+TGG | 0.429903 | 8.4:-45416355 | None:intergenic |
| TCTCTCACTTGAATAAGGTT+AGG | 0.439144 | 8.4:+45414917 | MS.gene046090:CDS |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 8.4:+45416393 | MS.gene046090:CDS |
| GTTAGAATTGGAACGGCTAA+TGG | 0.451300 | 8.4:+45416753 | MS.gene046090:CDS |
| GTTGAAGCAGTTAAGTTAGC+TGG | 0.452845 | 8.4:-45416328 | None:intergenic |
| CATTTAATTTCAATTTGACT+TGG | 0.466420 | 8.4:+45416635 | MS.gene046090:CDS |
| GGTAGCTCTAGAGTTAGAAT+TGG | 0.468868 | 8.4:+45416741 | MS.gene046090:CDS |
| CAGTTATTTGGAGAAATTGA+AGG | 0.468934 | 8.4:+45416693 | MS.gene046090:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 8.4:+45416847 | MS.gene046090:CDS |
| AGCTTCTTGGTCCTGAAAGA+GGG | 0.472012 | 8.4:+45416227 | MS.gene046090:CDS |
| GAGCTTCTTGGTCCTGAAAG+AGG | 0.479843 | 8.4:+45416226 | MS.gene046090:CDS |
| TCATCCTTGGCGGCTATCCA+TGG | 0.501161 | 8.4:+45414959 | MS.gene046090:CDS |
| TTTGGAGAAATTGAAGGAAG+CGG | 0.501603 | 8.4:+45416699 | MS.gene046090:CDS |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 8.4:+45416503 | MS.gene046090:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 8.4:+45416552 | MS.gene046090:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 8.4:+45416394 | MS.gene046090:CDS |
| GCTAGCAAGACACTTACAAA+AGG | 0.538637 | 8.4:+45415200 | MS.gene046090:CDS |
| GAACATACTTCCTCTAGTAA+TGG | 0.544728 | 8.4:-45416445 | None:intergenic |
| TCTGAGCCTTTCATCCTTGG+CGG | 0.550070 | 8.4:+45414949 | MS.gene046090:CDS |
| TGAAAGAGGGTTTATTGTGA+AGG | 0.555016 | 8.4:+45416240 | MS.gene046090:CDS |
| TCCAAAGCAGATTGAACACA+AGG | 0.565327 | 8.4:-45416664 | None:intergenic |
| GGATAGCCGCCAAGGATGAA+AGG | 0.566403 | 8.4:-45414955 | None:intergenic |
| TCCTGACACAAAATAAGCGA+AGG | 0.566723 | 8.4:-45416475 | None:intergenic |
| CTCTAGAGTTAGAATTGGAA+CGG | 0.567249 | 8.4:+45416746 | MS.gene046090:CDS |
| CCAGAGCCAGAACTAGAAGA+AGG | 0.572474 | 8.4:+45416355 | MS.gene046090:CDS |
| CGAGCGATGAGAAGTTCACA+TGG | 0.574026 | 8.4:+45414881 | MS.gene046090:CDS |
| ACTTTGGATTTCAAGGGTGT+AGG | 0.575922 | 8.4:+45416400 | MS.gene046090:CDS |
| GGCCTTTATTCCATTACTAG+AGG | 0.578841 | 8.4:+45416435 | MS.gene046090:CDS |
| TACACTGCTAATATGTTTCA+GGG | 0.579049 | 8.4:+45415128 | MS.gene046090:CDS |
| CTGCTAATATGTTTCAGGGA+TGG | 0.579409 | 8.4:+45415132 | MS.gene046090:CDS |
| CATACCATGGATAGCCGCCA+AGG | 0.606316 | 8.4:-45414963 | None:intergenic |
| TGCAGCAAGAGACTTGTTGG+AGG | 0.618326 | 8.4:+45416807 | MS.gene046090:CDS |
| AGAAGGCCAACGCCAAAATG+TGG | 0.623253 | 8.4:+45416372 | MS.gene046090:CDS |
| CCTGACACAAAATAAGCGAA+GGG | 0.648287 | 8.4:-45416474 | None:intergenic |
| GGGTGTAGGACAAATAGAGA+AGG | 0.651657 | 8.4:+45416414 | MS.gene046090:CDS |
| CTAACTTAACTGCTTCAACA+AGG | 0.670044 | 8.4:+45416332 | MS.gene046090:CDS |
| TGATTTGTCTGTATCAATGG+GGG | 0.682465 | 8.4:+45415063 | MS.gene046090:CDS |
| ATGATTTGTCTGTATCAATG+GGG | 0.692803 | 8.4:+45415062 | MS.gene046090:CDS |
| ATAAAGAACTCTGCCCAAAG+CGG | 0.731605 | 8.4:-45416533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTATACTAATAA+TGG | + | chr8.4:45415432-45415451 | MS.gene046090:intron | 10.0% |
| !!! | ATTATTAGTATAACTTTTTT+TGG | - | chr8.4:45415433-45415452 | None:intergenic | 10.0% |
| !! | ACATTAGAAATTTAAAAAGT+CGG | - | chr8.4:45415771-45415790 | None:intergenic | 15.0% |
| !! | TAAGAATCTTCAAAAAATTT+GGG | + | chr8.4:45416600-45416619 | MS.gene046090:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | - | chr8.4:45415409-45415428 | None:intergenic | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | - | chr8.4:45415425-45415444 | None:intergenic | 15.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | - | chr8.4:45415662-45415681 | None:intergenic | 20.0% |
| !! | ATAAAGGGAAAATAAGAATT+TGG | + | chr8.4:45415995-45416014 | MS.gene046090:intron | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr8.4:45416637-45416656 | None:intergenic | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | + | chr8.4:45416599-45416618 | MS.gene046090:CDS | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr8.4:45416635-45416654 | MS.gene046090:CDS | 20.0% |
| !!! | CTAAGTTATTTTAGATTAGT+CGG | + | chr8.4:45415274-45415293 | MS.gene046090:intron | 20.0% |
| !!! | TCTAATGTGATTTTTTTGTT+GGG | + | chr8.4:45415783-45415802 | MS.gene046090:intron | 20.0% |
| !!! | TTCTAATGTGATTTTTTTGT+TGG | + | chr8.4:45415782-45415801 | MS.gene046090:intron | 20.0% |
| ! | AATGCAAGTAAGGATTATTT+GGG | + | chr8.4:45416181-45416200 | MS.gene046090:CDS | 25.0% |
| ! | TAAACAAACAACAAAAGAGA+CGG | - | chr8.4:45416042-45416061 | None:intergenic | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | + | chr8.4:45416089-45416108 | MS.gene046090:intron | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr8.4:45416552-45416571 | MS.gene046090:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr8.4:45414979-45414998 | None:intergenic | 25.0% |
| ! | TTCCAACTCTTTCTAATATT+GGG | - | chr8.4:45415496-45415515 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | + | chr8.4:45415251-45415270 | MS.gene046090:intron | 25.0% |
| ! | TTTCCAACTCTTTCTAATAT+TGG | - | chr8.4:45415497-45415516 | None:intergenic | 25.0% |
| ! | TTTGGAAAAGAACAGTTATT+TGG | + | chr8.4:45416681-45416700 | MS.gene046090:CDS | 25.0% |
| !!! | AACAATAGTTTTGTATCATG+AGG | - | chr8.4:45415013-45415032 | None:intergenic | 25.0% |
| !!! | ACAATAGTTTTGTATCATGA+GGG | - | chr8.4:45415012-45415031 | None:intergenic | 25.0% |
| !!! | CTTTTTATTTTTCAGTCTCA+AGG | + | chr8.4:45415919-45415938 | MS.gene046090:intron | 25.0% |
| CAATGCAAGTAAGGATTATT+TGG | + | chr8.4:45416180-45416199 | MS.gene046090:CDS | 30.0% | |
| CAGTTATTTGGAGAAATTGA+AGG | + | chr8.4:45416693-45416712 | MS.gene046090:CDS | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | + | chr8.4:45416603-45416622 | MS.gene046090:CDS | 30.0% | |
| GTATTTGTTCTATGTTGCAA+AGG | - | chr8.4:45415878-45415897 | None:intergenic | 30.0% | |
| TACACTGCTAATATGTTTCA+GGG | + | chr8.4:45415128-45415147 | MS.gene046090:CDS | 30.0% | |
| TGTATTGTGTGTGAAATTTG+TGG | + | chr8.4:45415676-45415695 | MS.gene046090:intron | 30.0% | |
| TTCCCAATATTAGAAAGAGT+TGG | + | chr8.4:45415491-45415510 | MS.gene046090:intron | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | - | chr8.4:45416163-45416182 | None:intergenic | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | - | chr8.4:45415758-45415777 | None:intergenic | 30.0% |
| ! | AGTAAGGATTATTTGGGTTT+CGG | + | chr8.4:45416187-45416206 | MS.gene046090:CDS | 30.0% |
| ! | AGTTAGATTCTGGAAAATTC+AGG | - | chr8.4:45416153-45416172 | None:intergenic | 30.0% |
| ! | ATGATTTGTCTGTATCAATG+GGG | + | chr8.4:45415062-45415081 | MS.gene046090:CDS | 30.0% |
| ! | GATGATTTGTCTGTATCAAT+GGG | + | chr8.4:45415061-45415080 | MS.gene046090:CDS | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | - | chr8.4:45416440-45416459 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr8.4:45416834-45416853 | MS.gene046090:CDS | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | - | chr8.4:45416128-45416147 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTGACTTTGCTTT+AGG | + | chr8.4:45415039-45415058 | MS.gene046090:intron | 30.0% |
| AAACAACAAAAGAGACGGAT+TGG | - | chr8.4:45416037-45416056 | None:intergenic | 35.0% | |
| AGAAAAAAACTCGCAGGTTT+AGG | + | chr8.4:45416497-45416516 | MS.gene046090:CDS | 35.0% | |
| AGGTCAAAAATCAAGACTCA+GGG | - | chr8.4:45415373-45415392 | None:intergenic | 35.0% | |
| CTAACTTAACTGCTTCAACA+AGG | + | chr8.4:45416332-45416351 | MS.gene046090:CDS | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | + | chr8.4:45416498-45416517 | MS.gene046090:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | - | chr8.4:45416448-45416467 | None:intergenic | 35.0% | |
| GAACTTCTCTCACTTGAATA+AGG | + | chr8.4:45414912-45414931 | MS.gene046090:CDS | 35.0% | |
| GCGCTCAACAAAATCATAAA+GGG | + | chr8.4:45415980-45415999 | MS.gene046090:intron | 35.0% | |
| GGAAAAACTAAGGGATAATG+TGG | + | chr8.4:45416720-45416739 | MS.gene046090:CDS | 35.0% | |
| GTACACTGCTAATATGTTTC+AGG | + | chr8.4:45415127-45415146 | MS.gene046090:CDS | 35.0% | |
| TAGGTCAAAAATCAAGACTC+AGG | - | chr8.4:45415374-45415393 | None:intergenic | 35.0% | |
| TCTCTCACTTGAATAAGGTT+AGG | + | chr8.4:45414917-45414936 | MS.gene046090:CDS | 35.0% | |
| TGAAAGAGGGTTTATTGTGA+AGG | + | chr8.4:45416240-45416259 | MS.gene046090:CDS | 35.0% | |
| TGCGCTCAACAAAATCATAA+AGG | + | chr8.4:45415979-45415998 | MS.gene046090:intron | 35.0% | |
| TTCACAATAAACCCTCTTTC+AGG | - | chr8.4:45416241-45416260 | None:intergenic | 35.0% | |
| TTTGGAGAAATTGAAGGAAG+CGG | + | chr8.4:45416699-45416718 | MS.gene046090:CDS | 35.0% | |
| ! | ATTTTGTTGAGCGCAAAACA+TGG | - | chr8.4:45415974-45415993 | None:intergenic | 35.0% |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | + | chr8.4:45416171-45416190 | MS.gene046090:CDS | 35.0% |
| ! | GAAGCATATGGGTTGTAAAA+CGG | + | chr8.4:45415577-45415596 | MS.gene046090:intron | 35.0% |
| ! | GGATGATTTGTCTGTATCAA+TGG | + | chr8.4:45415060-45415079 | MS.gene046090:intron | 35.0% |
| ! | TGATTTGTCTGTATCAATGG+GGG | + | chr8.4:45415063-45415082 | MS.gene046090:CDS | 35.0% |
| !! | AACTATACCTCTGAAGCATA+TGG | + | chr8.4:45415565-45415584 | MS.gene046090:intron | 35.0% |
| !! | ACTATACCTCTGAAGCATAT+GGG | + | chr8.4:45415566-45415585 | MS.gene046090:intron | 35.0% |
| !! | CTCTAGAGTTAGAATTGGAA+CGG | + | chr8.4:45416746-45416765 | MS.gene046090:CDS | 35.0% |
| AAACGGTGAAGTACATGTAC+CGG | + | chr8.4:45415594-45415613 | MS.gene046090:intron | 40.0% | |
| ATAAAGAACTCTGCCCAAAG+CGG | - | chr8.4:45416536-45416555 | None:intergenic | 40.0% | |
| ATGACGTTATCTGAGCTTCT+TGG | + | chr8.4:45416214-45416233 | MS.gene046090:CDS | 40.0% | |
| ATGAGTCACAGTAAGATTGC+AGG | + | chr8.4:45415309-45415328 | MS.gene046090:intron | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr8.4:45416847-45416866 | MS.gene046090:CDS | 40.0% | |
| CCTGACACAAAATAAGCGAA+GGG | - | chr8.4:45416477-45416496 | None:intergenic | 40.0% | |
| CTCTCACCTTTCTTGTCTTA+AGG | - | chr8.4:45416561-45416580 | None:intergenic | 40.0% | |
| CTGCTAATATGTTTCAGGGA+TGG | + | chr8.4:45415132-45415151 | MS.gene046090:CDS | 40.0% | |
| GAAGGAAGCGGAAAAACTAA+GGG | + | chr8.4:45416711-45416730 | MS.gene046090:CDS | 40.0% | |
| GCTAGCAAGACACTTACAAA+AGG | + | chr8.4:45415200-45415219 | MS.gene046090:CDS | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | + | chr8.4:45416435-45416454 | MS.gene046090:CDS | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | + | chr8.4:45416394-45416413 | MS.gene046090:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr8.4:45416256-45416275 | MS.gene046090:CDS | 40.0% | |
| GTTAGAATTGGAACGGCTAA+TGG | + | chr8.4:45416753-45416772 | MS.gene046090:CDS | 40.0% | |
| GTTGAAGCAGTTAAGTTAGC+TGG | - | chr8.4:45416331-45416350 | None:intergenic | 40.0% | |
| TCCAAAGCAGATTGAACACA+AGG | - | chr8.4:45416667-45416686 | None:intergenic | 40.0% | |
| TCCTGACACAAAATAAGCGA+AGG | - | chr8.4:45416478-45416497 | None:intergenic | 40.0% | |
| TGAAGGAAGCGGAAAAACTA+AGG | + | chr8.4:45416710-45416729 | MS.gene046090:CDS | 40.0% | |
| TTACAACCCATATGCTTCAG+AGG | - | chr8.4:45415575-45415594 | None:intergenic | 40.0% | |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | + | chr8.4:45416400-45416419 | MS.gene046090:CDS | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | - | chr8.4:45415393-45415412 | None:intergenic | 40.0% |
| !! | GGCAGAAGATTTTGAAGAGA+TGG | + | chr8.4:45416828-45416847 | MS.gene046090:CDS | 40.0% |
| !! | GGTAGCTCTAGAGTTAGAAT+TGG | + | chr8.4:45416741-45416760 | MS.gene046090:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | + | chr8.4:45416503-45416522 | MS.gene046090:CDS | 45.0% | |
| AACGGTGAAGTACATGTACC+GGG | + | chr8.4:45415595-45415614 | MS.gene046090:intron | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | + | chr8.4:45416504-45416523 | MS.gene046090:CDS | 45.0% | |
| AGCTTCTTGGTCCTGAAAGA+GGG | + | chr8.4:45416227-45416246 | MS.gene046090:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | + | chr8.4:45416384-45416403 | MS.gene046090:CDS | 45.0% | |
| GCCTTGTGTTCAATCTGCTT+TGG | + | chr8.4:45416663-45416682 | MS.gene046090:CDS | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | + | chr8.4:45416414-45416433 | MS.gene046090:CDS | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | + | chr8.4:45416393-45416412 | MS.gene046090:CDS | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | + | chr8.4:45416491-45416510 | MS.gene046090:CDS | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | + | chr8.4:45416804-45416823 | MS.gene046090:CDS | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | - | chr8.4:45416387-45416406 | None:intergenic | 45.0% |
| !!! | CCCTTCGCTTATTTTGTGTC+AGG | + | chr8.4:45416474-45416493 | MS.gene046090:CDS | 45.0% |
| AGAAGGCCAACGCCAAAATG+TGG | + | chr8.4:45416372-45416391 | MS.gene046090:CDS | 50.0% | |
| CCAGAGCCAGAACTAGAAGA+AGG | + | chr8.4:45416355-45416374 | MS.gene046090:CDS | 50.0% | |
| CGAGCGATGAGAAGTTCACA+TGG | + | chr8.4:45414881-45414900 | MS.gene046090:CDS | 50.0% | |
| GAGCTTCTTGGTCCTGAAAG+AGG | + | chr8.4:45416226-45416245 | MS.gene046090:CDS | 50.0% | |
| TCTGAGCCTTTCATCCTTGG+CGG | + | chr8.4:45414949-45414968 | MS.gene046090:CDS | 50.0% | |
| TGTCTGTATCAATGGGGGAC+AGG | + | chr8.4:45415068-45415087 | MS.gene046090:CDS | 50.0% | |
| ! | TGCTCTGAGCCTTTCATCCT+TGG | + | chr8.4:45414946-45414965 | MS.gene046090:CDS | 50.0% |
| !! | CCTTCTTCTAGTTCTGGCTC+TGG | - | chr8.4:45416358-45416377 | None:intergenic | 50.0% |
| !! | CGTTGGCCTTCTTCTAGTTC+TGG | - | chr8.4:45416364-45416383 | None:intergenic | 50.0% |
| !! | TCTCGACCACATTTTGGCGT+TGG | - | chr8.4:45416381-45416400 | None:intergenic | 50.0% |
| !! | TGCAGCAAGAGACTTGTTGG+AGG | + | chr8.4:45416807-45416826 | MS.gene046090:CDS | 50.0% |
| CATACCATGGATAGCCGCCA+AGG | - | chr8.4:45414966-45414985 | None:intergenic | 55.0% | |
| GAATGGGCGTTCACCGCTTT+GGG | + | chr8.4:45416520-45416539 | MS.gene046090:CDS | 55.0% | |
| GGATAGCCGCCAAGGATGAA+AGG | - | chr8.4:45414958-45414977 | None:intergenic | 55.0% | |
| TACCGTACGCGTACCCAGTA+CGG | - | chr8.4:45415628-45415647 | None:intergenic | 55.0% | |
| TCATCCTTGGCGGCTATCCA+TGG | + | chr8.4:45414959-45414978 | MS.gene046090:CDS | 55.0% | |
| ACCCAGTACGGGTGTGTACC+CGG | - | chr8.4:45415616-45415635 | None:intergenic | 60.0% | |
| ACCCGTACTGGGTACGCGTA+CGG | + | chr8.4:45415623-45415642 | MS.gene046090:intron | 60.0% | |
| ACCGGGTACACACCCGTACT+GGG | + | chr8.4:45415612-45415631 | MS.gene046090:intron | 60.0% | |
| ACCGTACGCGTACCCAGTAC+GGG | - | chr8.4:45415627-45415646 | None:intergenic | 60.0% | |
| GGAATGGGCGTTCACCGCTT+TGG | + | chr8.4:45416519-45416538 | MS.gene046090:CDS | 60.0% | |
| GGGTACGCGTACGGTACTTG+TGG | + | chr8.4:45415632-45415651 | MS.gene046090:intron | 60.0% | |
| TACCGGGTACACACCCGTAC+TGG | + | chr8.4:45415611-45415630 | MS.gene046090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 45414865 | 45416885 | 45414865 | ID=MS.gene046090 |
| chr8.4 | mRNA | 45414865 | 45416885 | 45414865 | ID=MS.gene046090.t1;Parent=MS.gene046090 |
| chr8.4 | exon | 45414865 | 45414980 | 45414865 | ID=MS.gene046090.t1.exon1;Parent=MS.gene046090.t1 |
| chr8.4 | CDS | 45414865 | 45414980 | 45414865 | ID=cds.MS.gene046090.t1;Parent=MS.gene046090.t1 |
| chr8.4 | exon | 45415061 | 45415221 | 45415061 | ID=MS.gene046090.t1.exon2;Parent=MS.gene046090.t1 |
| chr8.4 | CDS | 45415061 | 45415221 | 45415061 | ID=cds.MS.gene046090.t1;Parent=MS.gene046090.t1 |
| chr8.4 | exon | 45416164 | 45416885 | 45416164 | ID=MS.gene046090.t1.exon3;Parent=MS.gene046090.t1 |
| chr8.4 | CDS | 45416164 | 45416885 | 45416164 | ID=cds.MS.gene046090.t1;Parent=MS.gene046090.t1 |
| Gene Sequence |
| Protein sequence |
