Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56555.t1 | XP_003607708.1 | 95.1 | 449 | 9 | 3 | 1 | 448 | 1 | 437 | 2.00E-222 | 781.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56555.t1 | G7JF39 | 95.1 | 449 | 9 | 3 | 1 | 448 | 1 | 437 | 1.4e-222 | 781.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56555.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene56555 | 0.8135 | 2.48E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene56555 | 0.80342 | 3.52E-49 | -1.69E-46 |
| MS.gene049979 | MS.gene56555 | 0.805899 | 1.07E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene56555 | 0.823144 | 1.62E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene56555 | 0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene56555 | 0.806682 | 7.31E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene56555 | -0.802399 | 5.71E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene56555 | 0.810584 | 1.07E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene56555 | 0.838538 | 2.71E-57 | -1.69E-46 |
| MS.gene050778 | MS.gene56555 | 0.812254 | 4.65E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene56555 | 0.849799 | 2.56E-60 | -1.69E-46 |
| MS.gene050808 | MS.gene56555 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene56555 | 0.818404 | 2.00E-52 | -1.69E-46 |
| MS.gene050959 | MS.gene56555 | 0.826967 | 2.03E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene56555 | 0.815723 | 7.99E-52 | -1.69E-46 |
| MS.gene051577 | MS.gene56555 | 0.816805 | 4.58E-52 | -1.69E-46 |
| MS.gene051626 | MS.gene56555 | 0.820903 | 5.36E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene56555 | 0.837398 | 5.32E-57 | -1.69E-46 |
| MS.gene052133 | MS.gene56555 | 0.82155 | 3.80E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene56555 | 0.817086 | 3.96E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene56555 | 0.841573 | 4.38E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene56555 | 0.837165 | 6.10E-57 | -1.69E-46 |
| MS.gene052665 | MS.gene56555 | 0.845156 | 4.84E-59 | -1.69E-46 |
| MS.gene052856 | MS.gene56555 | 0.839206 | 1.82E-57 | -1.69E-46 |
| MS.gene052858 | MS.gene56555 | 0.814085 | 1.84E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene56555 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene56555 | 0.813884 | 2.04E-51 | -1.69E-46 |
| MS.gene053132 | MS.gene56555 | 0.837111 | 6.30E-57 | -1.69E-46 |
| MS.gene053174 | MS.gene56555 | 0.823519 | 1.33E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene56555 | 0.862474 | 4.94E-64 | -1.69E-46 |
| MS.gene053563 | MS.gene56555 | 0.801662 | 8.10E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene56555 | 0.819933 | 8.95E-53 | -1.69E-46 |
| MS.gene054185 | MS.gene56555 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene054667 | MS.gene56555 | 0.801149 | 1.03E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene56555 | 0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene56555 | -0.841012 | 6.15E-58 | -1.69E-46 |
| MS.gene056432 | MS.gene56555 | 0.812215 | 4.74E-51 | -1.69E-46 |
| MS.gene056584 | MS.gene56555 | 0.807501 | 4.90E-50 | -1.69E-46 |
| MS.gene056643 | MS.gene56555 | 0.824848 | 6.46E-54 | -1.69E-46 |
| MS.gene056760 | MS.gene56555 | 0.819483 | 1.13E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene56555 | 0.831564 | 1.55E-55 | -1.69E-46 |
| MS.gene057260 | MS.gene56555 | 0.806605 | 7.58E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene56555 | 0.824222 | 9.07E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene56555 | 0.831124 | 1.99E-55 | -1.69E-46 |
| MS.gene058851 | MS.gene56555 | 0.813591 | 2.37E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene56555 | 0.859809 | 3.20E-63 | -1.69E-46 |
| MS.gene058982 | MS.gene56555 | 0.82871 | 7.73E-55 | -1.69E-46 |
| MS.gene059713 | MS.gene56555 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene56555 | 0.825076 | 5.71E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene56555 | 0.848499 | 5.89E-60 | -1.69E-46 |
| MS.gene060404 | MS.gene56555 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene56555 | 0.834791 | 2.44E-56 | -1.69E-46 |
| MS.gene060480 | MS.gene56555 | 0.81139 | 7.17E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene56555 | 0.806073 | 9.82E-50 | -1.69E-46 |
| MS.gene060619 | MS.gene56555 | 0.852221 | 5.32E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56555.t1 | MTR_4g081420 | 96.437 | 449 | 3 | 3 | 1 | 448 | 1 | 437 | 0.0 | 868 |
| MS.gene56555.t1 | MTR_2g010860 | 43.155 | 431 | 186 | 10 | 21 | 447 | 1 | 376 | 1.84e-98 | 300 |
| MS.gene56555.t1 | MTR_2g010870 | 54.513 | 277 | 112 | 5 | 184 | 448 | 82 | 356 | 6.11e-90 | 278 |
| MS.gene56555.t1 | MTR_1g024980 | 38.837 | 430 | 191 | 13 | 22 | 445 | 35 | 398 | 1.01e-72 | 234 |
| MS.gene56555.t1 | MTR_3g072920 | 51.653 | 242 | 103 | 7 | 211 | 445 | 214 | 448 | 3.58e-70 | 229 |
| MS.gene56555.t1 | MTR_3g463270 | 44.583 | 240 | 116 | 8 | 216 | 445 | 154 | 386 | 6.10e-55 | 187 |
| MS.gene56555.t1 | MTR_5g012220 | 34.375 | 224 | 94 | 7 | 238 | 447 | 105 | 289 | 8.48e-30 | 117 |
| MS.gene56555.t1 | MTR_4g101450 | 35.238 | 210 | 100 | 6 | 241 | 447 | 98 | 274 | 2.36e-27 | 110 |
| MS.gene56555.t1 | MTR_5g094440 | 32.864 | 213 | 129 | 5 | 235 | 445 | 68 | 268 | 3.95e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56555.t1 | AT5G54630 | 69.481 | 462 | 96 | 11 | 21 | 447 | 20 | 471 | 0.0 | 589 |
| MS.gene56555.t1 | AT4G27240 | 64.450 | 436 | 117 | 6 | 18 | 447 | 27 | 430 | 0.0 | 531 |
| MS.gene56555.t1 | AT4G27240 | 62.990 | 408 | 113 | 6 | 18 | 419 | 27 | 402 | 2.14e-167 | 478 |
| MS.gene56555.t1 | AT1G11490 | 39.819 | 442 | 173 | 16 | 21 | 447 | 1 | 364 | 2.33e-78 | 248 |
| MS.gene56555.t1 | AT1G11490 | 39.819 | 442 | 173 | 16 | 21 | 447 | 1 | 364 | 2.33e-78 | 248 |
| MS.gene56555.t1 | AT1G75710 | 46.875 | 256 | 109 | 5 | 216 | 447 | 206 | 458 | 1.71e-61 | 207 |
| MS.gene56555.t1 | AT2G29660 | 41.634 | 257 | 125 | 7 | 208 | 445 | 120 | 370 | 1.75e-48 | 170 |
| MS.gene56555.t1 | AT4G22560 | 38.605 | 215 | 86 | 9 | 235 | 445 | 89 | 261 | 8.31e-29 | 114 |
| MS.gene56555.t1 | AT1G62520 | 38.863 | 211 | 96 | 7 | 239 | 447 | 100 | 279 | 3.95e-28 | 113 |
| MS.gene56555.t1 | AT4G12450 | 33.180 | 217 | 96 | 7 | 239 | 445 | 97 | 274 | 5.18e-23 | 98.6 |
Find 78 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATAACTTCATGAGTTAT+TGG | 0.157846 | 4.4:+30898714 | None:intergenic |
| AAAAGAAGAAGAAGCATTAA+AGG | 0.207612 | 4.4:-30898991 | MS.gene56555:CDS |
| TCAAACTGGATTTGATTCTT+TGG | 0.236240 | 4.4:-30897378 | MS.gene56555:CDS |
| CTTGGCAGTTACTGAACTTT+TGG | 0.259869 | 4.4:-30897900 | MS.gene56555:intron |
| GACACCTAGGATGTTTCTTC+TGG | 0.309460 | 4.4:+30897708 | None:intergenic |
| GGGTTAAAGTAATGCATTGT+AGG | 0.377644 | 4.4:+30898543 | None:intergenic |
| ACCACAGTAGCTTGTTCTCT+TGG | 0.380190 | 4.4:-30897650 | MS.gene56555:CDS |
| TCTCTTGAAACAGATTCTAA+TGG | 0.386384 | 4.4:-30898417 | MS.gene56555:CDS |
| GCTTGTTCTCTTGGTCTCAA+TGG | 0.401559 | 4.4:-30897641 | MS.gene56555:CDS |
| AAAATATTTACCAGCATGCT+TGG | 0.405089 | 4.4:+30898320 | None:intergenic |
| AAGGAGTTGAAAGGTGGAAT+AGG | 0.409316 | 4.4:-30897548 | MS.gene56555:CDS |
| GTTGTGTTTGTAGAATCATT+AGG | 0.411461 | 4.4:-30897589 | MS.gene56555:CDS |
| TAATTGCTGGTAGGGTTCAT+AGG | 0.416479 | 4.4:-30897430 | MS.gene56555:CDS |
| AAAGAAGAAGAAGCATTAAA+GGG | 0.417589 | 4.4:-30898990 | MS.gene56555:CDS |
| ACTGGATTTGATTCTTTGGC+TGG | 0.418812 | 4.4:-30897374 | MS.gene56555:CDS |
| CAAGAAATGGCATCTCAAAC+TGG | 0.425597 | 4.4:-30897392 | MS.gene56555:CDS |
| GTGGTGTTCATTCAAGTAAT+AGG | 0.426313 | 4.4:-30898443 | MS.gene56555:CDS |
| AAAAGAAAAGGTGATTTCCT+TGG | 0.433309 | 4.4:+30898495 | None:intergenic |
| GTATAAGAAGAAAACCAAAA+AGG | 0.435847 | 4.4:-30899021 | MS.gene56555:CDS |
| ACTTGAAAACATTCAAGAAA+TGG | 0.445655 | 4.4:-30897405 | MS.gene56555:CDS |
| GTGGTGAACAGTTTAACAAA+TGG | 0.446542 | 4.4:-30898368 | MS.gene56555:CDS |
| TAATGAACCTTCACTTAGAA+AGG | 0.446634 | 4.4:-30897471 | MS.gene56555:CDS |
| CCTCCAGGACCAGGTGTACC+AGG | 0.455632 | 4.4:+30898570 | None:intergenic |
| TCACTGCTTCCTATAGATCT+TGG | 0.456992 | 4.4:+30898747 | None:intergenic |
| GATTCTTTGGCTGGTAAAGT+AGG | 0.457682 | 4.4:-30897365 | MS.gene56555:CDS |
| GTTGAAGAAGTCCTAAAAGA+AGG | 0.458747 | 4.4:+30898522 | None:intergenic |
| AGTTGCAGTCCAAGATCTAT+AGG | 0.459011 | 4.4:-30898756 | MS.gene56555:CDS |
| ATGCAGAGTAATTGCTGGTA+GGG | 0.484307 | 4.4:-30897438 | MS.gene56555:CDS |
| TACCAGCATGCTTGGAGAGA+TGG | 0.491155 | 4.4:+30898328 | None:intergenic |
| GGTGGTTCTTCAACTTATGT+TGG | 0.492368 | 4.4:-30898603 | MS.gene56555:CDS |
| ATAGTATGCAGAGTAATTGC+TGG | 0.496317 | 4.4:-30897443 | MS.gene56555:CDS |
| TGGTGAACAGTTTAACAAAT+GGG | 0.498621 | 4.4:-30898367 | MS.gene56555:CDS |
| GAGGAAGATCAGGTTGTTCA+AGG | 0.499461 | 4.4:-30898839 | MS.gene56555:CDS |
| GACCCTTCTGACAAAAGAAA+AGG | 0.499545 | 4.4:+30898483 | None:intergenic |
| ATCAATGCCTTTCTAAGTGA+AGG | 0.505745 | 4.4:+30897464 | None:intergenic |
| GATCTTGGACTGCAACTTGG+TGG | 0.516239 | 4.4:+30898762 | None:intergenic |
| TTTGGATCATGTACATCTGA+TGG | 0.518690 | 4.4:+30898912 | None:intergenic |
| TGCATTGTAGGGTGTCCTCC+AGG | 0.520201 | 4.4:+30898555 | None:intergenic |
| CATCCTAGGTGTCTAGCTGA+TGG | 0.521265 | 4.4:-30897698 | MS.gene56555:CDS |
| CACCATCTCTCCAAGCATGC+TGG | 0.523843 | 4.4:-30898330 | MS.gene56555:intron |
| AAACAAGGAAGAAGAGCTCT+AGG | 0.526190 | 4.4:+30897305 | None:intergenic |
| TTCAAAGAAAACCACACTGT+TGG | 0.527957 | 4.4:+30898960 | None:intergenic |
| AAATTATATGCAGGACAAGC+TGG | 0.530091 | 4.4:-30897850 | MS.gene56555:CDS |
| AGGTCTTTATTCAAACATTG+AGG | 0.530157 | 4.4:-30897345 | MS.gene56555:CDS |
| AGATTCATCAAGGAAAATAG+TGG | 0.534245 | 4.4:-30897873 | MS.gene56555:CDS |
| GTAGGGTGTCCTCCAGGACC+AGG | 0.534778 | 4.4:+30898561 | None:intergenic |
| AATCTAAAAGATGTTATCCA+TGG | 0.536862 | 4.4:-30898807 | MS.gene56555:CDS |
| AGAAAAGGTGATTTCCTTGG+AGG | 0.540659 | 4.4:+30898498 | None:intergenic |
| AGACCTGGTACACCTGGTCC+TGG | 0.541493 | 4.4:-30898573 | MS.gene56555:CDS |
| ATAGATCTTGGACTGCAACT+TGG | 0.545029 | 4.4:+30898759 | None:intergenic |
| CACAACATCTACAAGTGGAA+GGG | 0.551250 | 4.4:-30897519 | MS.gene56555:CDS |
| GGTTAAAGTAATGCATTGTA+GGG | 0.557734 | 4.4:+30898544 | None:intergenic |
| GGACTTCTTCAACTCCTCCA+AGG | 0.558541 | 4.4:-30898512 | MS.gene56555:CDS |
| TATGCAGAGTAATTGCTGGT+AGG | 0.562940 | 4.4:-30897439 | MS.gene56555:CDS |
| ACTTTAAGACCTGGTACACC+TGG | 0.565382 | 4.4:-30898579 | MS.gene56555:CDS |
| TCACAACATCTACAAGTGGA+AGG | 0.571126 | 4.4:-30897520 | MS.gene56555:CDS |
| AACTCCAGAAGAAACATCCT+AGG | 0.571187 | 4.4:-30897712 | MS.gene56555:CDS |
| AAATAGTGGAAATTATATGC+AGG | 0.573880 | 4.4:-30897859 | MS.gene56555:CDS |
| TTGAAGAAGTCCTAAAAGAA+GGG | 0.580726 | 4.4:+30898523 | None:intergenic |
| TATGTTGGTACTTTAAGACC+TGG | 0.582691 | 4.4:-30898588 | MS.gene56555:CDS |
| TCTGCTAAGAAGGAGTTGAA+AGG | 0.586835 | 4.4:-30897557 | MS.gene56555:CDS |
| CAAGAAGGGATTAACAGTGG+TGG | 0.589162 | 4.4:-30898654 | MS.gene56555:CDS |
| ATTTGAAGAGTACAGAGAGA+TGG | 0.595060 | 4.4:-30897753 | MS.gene56555:CDS |
| GTTTGTAGAATCATTAGGAG+TGG | 0.602627 | 4.4:-30897584 | MS.gene56555:CDS |
| TTGCAAATTACCACAAAACA+AGG | 0.607767 | 4.4:+30897290 | None:intergenic |
| TTTCCATCAGCTAGACACCT+AGG | 0.608502 | 4.4:+30897695 | None:intergenic |
| GCTAAGAAGGAGTTGAAAGG+TGG | 0.609494 | 4.4:-30897554 | MS.gene56555:CDS |
| CTCTCTCTATTCTGCCACAG+TGG | 0.632803 | 4.4:+30897813 | None:intergenic |
| GCTAGTGGTGGTAGTAGTAG+TGG | 0.635609 | 4.4:-30898624 | MS.gene56555:CDS |
| TTTCAAGAAGGGATTAACAG+TGG | 0.654520 | 4.4:-30898657 | MS.gene56555:CDS |
| AGTGGTGGTAGTAGTAGTGG+TGG | 0.661261 | 4.4:-30898621 | MS.gene56555:CDS |
| CCTGGTACACCTGGTCCTGG+AGG | 0.665004 | 4.4:-30898570 | MS.gene56555:CDS |
| ACCAAGAGAACAAGCTACTG+TGG | 0.672385 | 4.4:+30897649 | None:intergenic |
| ACTGTTACTTGTCACAAATG+TGG | 0.687396 | 4.4:-30898387 | MS.gene56555:CDS |
| AGGGTAATATGCCAACAGTG+TGG | 0.706544 | 4.4:-30898971 | MS.gene56555:CDS |
| GGTGGTAACAATGCTAGTGG+TGG | 0.732313 | 4.4:-30898636 | MS.gene56555:CDS |
| AGTGGTGGTAACAATGCTAG+TGG | 0.733810 | 4.4:-30898639 | MS.gene56555:CDS |
| TTAAAGTCAGAAAACCACTG+TGG | 0.819817 | 4.4:-30897827 | MS.gene56555:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTCAAAATATCT+AGG | - | chr4.4:30898222-30898241 | MS.gene56555:intron | 10.0% |
| !!! | TTTTTATTAAAAATTCTTCT+TGG | - | chr4.4:30898007-30898026 | MS.gene56555:intron | 10.0% |
| !! | CAAACAATTCTAAATTAAAA+AGG | + | chr4.4:30898189-30898208 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAATAAAATCTGT+TGG | + | chr4.4:30898218-30898237 | None:intergenic | 15.0% |
| !!! | TATGCTATAGAATTTTTTTA+TGG | - | chr4.4:30898089-30898108 | MS.gene56555:intron | 15.0% |
| !! | AAAATAACTTCATGAGTTAT+TGG | + | chr4.4:30897595-30897614 | None:intergenic | 20.0% |
| !! | AATTCTAAATTAAAAAGGCA+TGG | + | chr4.4:30898184-30898203 | None:intergenic | 20.0% |
| ! | AATACTAGGATAAAGTAGAT+TGG | + | chr4.4:30898274-30898293 | None:intergenic | 25.0% |
| ! | AATCTAAAAGATGTTATCCA+TGG | - | chr4.4:30897499-30897518 | MS.gene56555:CDS | 25.0% |
| ! | ACAATCTTAACAAAAAAAGG+AGG | - | chr4.4:30897436-30897455 | MS.gene56555:CDS | 25.0% |
| ! | ACTTGAAAACATTCAAGAAA+TGG | - | chr4.4:30898901-30898920 | MS.gene56555:CDS | 25.0% |
| ! | AGCACAATCTTAACAAAAAA+AGG | - | chr4.4:30897433-30897452 | MS.gene56555:CDS | 25.0% |
| ! | GTATAAGAAGAAAACCAAAA+AGG | - | chr4.4:30897285-30897304 | MS.gene56555:CDS | 25.0% |
| ! | TGTTCAATGTTCAAAATACT+AGG | + | chr4.4:30898288-30898307 | None:intergenic | 25.0% |
| ! | TTTGTGGTCAGAAAAATATT+TGG | + | chr4.4:30898044-30898063 | None:intergenic | 25.0% |
| !! | AAATAGTGGAAATTATATGC+AGG | - | chr4.4:30898447-30898466 | MS.gene56555:CDS | 25.0% |
| !! | ATTACTTTAACCCTTCTTTT+AGG | - | chr4.4:30897773-30897792 | MS.gene56555:CDS | 25.0% |
| !! | TAAAAATTCTTCTTGGCTTT+AGG | - | chr4.4:30898014-30898033 | MS.gene56555:intron | 25.0% |
| !! | TTCTTTTCTTTCAACCTTTT+TGG | + | chr4.4:30897302-30897321 | None:intergenic | 25.0% |
| !!! | AAAAGAAGAAGAAGCATTAA+AGG | - | chr4.4:30897315-30897334 | MS.gene56555:CDS | 25.0% |
| !!! | AAAGAAGAAGAAGCATTAAA+GGG | - | chr4.4:30897316-30897335 | MS.gene56555:CDS | 25.0% |
| !!! | AAATCCACACTTTTTGAATT+TGG | - | chr4.4:30898133-30898152 | MS.gene56555:intron | 25.0% |
| !!! | AAGTTATTTTGAGTAACTCA+AGG | - | chr4.4:30897605-30897624 | MS.gene56555:CDS | 25.0% |
| !!! | AATCCACACTTTTTGAATTT+GGG | - | chr4.4:30898134-30898153 | MS.gene56555:intron | 25.0% |
| !!! | AGAAAAATTTGTTTTTCCCT+TGG | - | chr4.4:30898388-30898407 | MS.gene56555:CDS | 25.0% |
| !!! | ATTTCTTGAATGTTTTCAAG+TGG | + | chr4.4:30898902-30898921 | None:intergenic | 25.0% |
| !!! | CTAAAGTTTTTTGCATATTG+TGG | + | chr4.4:30898529-30898548 | None:intergenic | 25.0% |
| !!! | GCTATAGAATTTTTTTATGG+TGG | - | chr4.4:30898092-30898111 | MS.gene56555:intron | 25.0% |
| AAAAGAAAAGGTGATTTCCT+TGG | + | chr4.4:30897814-30897833 | None:intergenic | 30.0% | |
| AAAATATTTACCAGCATGCT+TGG | + | chr4.4:30897989-30898008 | None:intergenic | 30.0% | |
| AGATTCATCAAGGAAAATAG+TGG | - | chr4.4:30898433-30898452 | MS.gene56555:CDS | 30.0% | |
| AGCATATCAGATAAAGACTA+TGG | + | chr4.4:30898075-30898094 | None:intergenic | 30.0% | |
| AGGATAAAGTAGATTGGAAA+AGG | + | chr4.4:30898268-30898287 | None:intergenic | 30.0% | |
| AGGTCTTTATTCAAACATTG+AGG | - | chr4.4:30898961-30898980 | MS.gene56555:CDS | 30.0% | |
| ATCTTAACAAAAAAAGGAGG+AGG | - | chr4.4:30897439-30897458 | MS.gene56555:CDS | 30.0% | |
| ATGTACATGATCCAAAAACA+AGG | - | chr4.4:30897401-30897420 | MS.gene56555:CDS | 30.0% | |
| GGATAAAGTAGATTGGAAAA+GGG | + | chr4.4:30898267-30898286 | None:intergenic | 30.0% | |
| GGTTAAAGTAATGCATTGTA+GGG | + | chr4.4:30897765-30897784 | None:intergenic | 30.0% | |
| GTTGTGTTTGTAGAATCATT+AGG | - | chr4.4:30898717-30898736 | MS.gene56555:CDS | 30.0% | |
| TAATGAACCTTCACTTAGAA+AGG | - | chr4.4:30898835-30898854 | MS.gene56555:CDS | 30.0% | |
| TCAAACTGGATTTGATTCTT+TGG | - | chr4.4:30898928-30898947 | MS.gene56555:CDS | 30.0% | |
| TCTCTTGAAACAGATTCTAA+TGG | - | chr4.4:30897889-30897908 | MS.gene56555:CDS | 30.0% | |
| TGGTGAACAGTTTAACAAAT+GGG | - | chr4.4:30897939-30897958 | MS.gene56555:intron | 30.0% | |
| TTGAAGAAGTCCTAAAAGAA+GGG | + | chr4.4:30897786-30897805 | None:intergenic | 30.0% | |
| TTGCAAATTACCACAAAACA+AGG | + | chr4.4:30899019-30899038 | None:intergenic | 30.0% | |
| ! | AATGAACTTTTACGGTTCTA+TGG | - | chr4.4:30898632-30898651 | MS.gene56555:CDS | 30.0% |
| ! | CTGATGGAAATGAACTTTTA+CGG | - | chr4.4:30898624-30898643 | MS.gene56555:CDS | 30.0% |
| ! | TTTTCTGACCACAAACTTTT+TGG | - | chr4.4:30898049-30898068 | MS.gene56555:intron | 30.0% |
| !! | CAGAATAGAGAGAGTTTTAA+AGG | - | chr4.4:30898502-30898521 | MS.gene56555:CDS | 30.0% |
| !!! | AAAATCACTGGTTTTCAAGA+AGG | - | chr4.4:30897637-30897656 | MS.gene56555:CDS | 30.0% |
| !!! | AAATCACTGGTTTTCAAGAA+GGG | - | chr4.4:30897638-30897657 | MS.gene56555:CDS | 30.0% |
| !!! | CTTAAATGCTTCCTTGTTTT+TGG | + | chr4.4:30897415-30897434 | None:intergenic | 30.0% |
| AAAAGTTCAGTAACTGCCAA+GGG | + | chr4.4:30898407-30898426 | None:intergenic | 35.0% | |
| AAATTATATGCAGGACAAGC+TGG | - | chr4.4:30898456-30898475 | MS.gene56555:CDS | 35.0% | |
| AGGTGTGAGTTAAAAATCAC+TGG | - | chr4.4:30897625-30897644 | MS.gene56555:CDS | 35.0% | |
| AGTCCCAAATTCAAAAAGTG+TGG | + | chr4.4:30898140-30898159 | None:intergenic | 35.0% | |
| ATAGTATGCAGAGTAATTGC+TGG | - | chr4.4:30898863-30898882 | MS.gene56555:CDS | 35.0% | |
| ATCAATGCCTTTCTAAGTGA+AGG | + | chr4.4:30898845-30898864 | None:intergenic | 35.0% | |
| GGGTTAAAGTAATGCATTGT+AGG | + | chr4.4:30897766-30897785 | None:intergenic | 35.0% | |
| GTGGTGAACAGTTTAACAAA+TGG | - | chr4.4:30897938-30897957 | MS.gene56555:intron | 35.0% | |
| GTGGTGTTCATTCAAGTAAT+AGG | - | chr4.4:30897863-30897882 | MS.gene56555:CDS | 35.0% | |
| GTTGAAGAAGTCCTAAAAGA+AGG | + | chr4.4:30897787-30897806 | None:intergenic | 35.0% | |
| GTTTGTAGAATCATTAGGAG+TGG | - | chr4.4:30898722-30898741 | MS.gene56555:CDS | 35.0% | |
| TTAAAGTCAGAAAACCACTG+TGG | - | chr4.4:30898479-30898498 | MS.gene56555:CDS | 35.0% | |
| TTAACAAAAAAAGGAGGAGG+AGG | - | chr4.4:30897442-30897461 | MS.gene56555:CDS | 35.0% | |
| TTCAAAGAAAACCACACTGT+TGG | + | chr4.4:30897349-30897368 | None:intergenic | 35.0% | |
| TTTCAAGAAGGGATTAACAG+TGG | - | chr4.4:30897649-30897668 | MS.gene56555:CDS | 35.0% | |
| TTTGGATCATGTACATCTGA+TGG | + | chr4.4:30897397-30897416 | None:intergenic | 35.0% | |
| ! | ACTGTTACTTGTCACAAATG+TGG | - | chr4.4:30897919-30897938 | MS.gene56555:intron | 35.0% |
| ! | ATTTGAAGAGTACAGAGAGA+TGG | - | chr4.4:30898553-30898572 | MS.gene56555:CDS | 35.0% |
| ! | CAATATGTCTTTTGCTTCCA+TGG | + | chr4.4:30897519-30897538 | None:intergenic | 35.0% |
| ! | CACCTTTTCTTTTGTCAGAA+GGG | - | chr4.4:30897821-30897840 | MS.gene56555:CDS | 35.0% |
| ! | GTTTTCACAACATCTACAAG+TGG | - | chr4.4:30898782-30898801 | MS.gene56555:CDS | 35.0% |
| ! | TCACCTTTTCTTTTGTCAGA+AGG | - | chr4.4:30897820-30897839 | MS.gene56555:CDS | 35.0% |
| !! | TATGTTGGTACTTTAAGACC+TGG | - | chr4.4:30897718-30897737 | MS.gene56555:CDS | 35.0% |
| !! | TTTTGGAAGGAGATTCATCA+AGG | - | chr4.4:30898423-30898442 | MS.gene56555:CDS | 35.0% |
| AAACAAGGAAGAAGAGCTCT+AGG | + | chr4.4:30899004-30899023 | None:intergenic | 40.0% | |
| AACTCCAGAAGAAACATCCT+AGG | - | chr4.4:30898594-30898613 | MS.gene56555:CDS | 40.0% | |
| AAGGAGTTGAAAGGTGGAAT+AGG | - | chr4.4:30898758-30898777 | MS.gene56555:CDS | 40.0% | |
| ACTGGATTTGATTCTTTGGC+TGG | - | chr4.4:30898932-30898951 | MS.gene56555:CDS | 40.0% | |
| AGAAAAGGTGATTTCCTTGG+AGG | + | chr4.4:30897811-30897830 | None:intergenic | 40.0% | |
| AGTTGCAGTCCAAGATCTAT+AGG | - | chr4.4:30897550-30897569 | MS.gene56555:CDS | 40.0% | |
| ATAGATCTTGGACTGCAACT+TGG | + | chr4.4:30897550-30897569 | None:intergenic | 40.0% | |
| ATGCAGAGTAATTGCTGGTA+GGG | - | chr4.4:30898868-30898887 | MS.gene56555:CDS | 40.0% | |
| CAAAAGTTCAGTAACTGCCA+AGG | + | chr4.4:30898408-30898427 | None:intergenic | 40.0% | |
| CAAGAAATGGCATCTCAAAC+TGG | - | chr4.4:30898914-30898933 | MS.gene56555:CDS | 40.0% | |
| CACAACATCTACAAGTGGAA+GGG | - | chr4.4:30898787-30898806 | MS.gene56555:CDS | 40.0% | |
| GACCCTTCTGACAAAAGAAA+AGG | + | chr4.4:30897826-30897845 | None:intergenic | 40.0% | |
| GACTATGGCCAAAAAGTTTG+TGG | + | chr4.4:30898060-30898079 | None:intergenic | 40.0% | |
| GATTCTTTGGCTGGTAAAGT+AGG | - | chr4.4:30898941-30898960 | MS.gene56555:CDS | 40.0% | |
| GGTGGTTCTTCAACTTATGT+TGG | - | chr4.4:30897703-30897722 | MS.gene56555:CDS | 40.0% | |
| TAATTGCTGGTAGGGTTCAT+AGG | - | chr4.4:30898876-30898895 | MS.gene56555:CDS | 40.0% | |
| TATGCAGAGTAATTGCTGGT+AGG | - | chr4.4:30898867-30898886 | MS.gene56555:CDS | 40.0% | |
| TCACAACATCTACAAGTGGA+AGG | - | chr4.4:30898786-30898805 | MS.gene56555:CDS | 40.0% | |
| TCACTGCTTCCTATAGATCT+TGG | + | chr4.4:30897562-30897581 | None:intergenic | 40.0% | |
| TCTGCTAAGAAGGAGTTGAA+AGG | - | chr4.4:30898749-30898768 | MS.gene56555:CDS | 40.0% | |
| ! | CTTGGCAGTTACTGAACTTT+TGG | - | chr4.4:30898406-30898425 | MS.gene56555:CDS | 40.0% |
| ! | CTTTTGTCAGAAGGGTCTAA+TGG | - | chr4.4:30897829-30897848 | MS.gene56555:CDS | 40.0% |
| ! | GAAGGGTCTAATGGTTTTCA+TGG | - | chr4.4:30897838-30897857 | MS.gene56555:CDS | 40.0% |
| ! | GAGTGGTTTTTCTGCTAAGA+AGG | - | chr4.4:30898739-30898758 | MS.gene56555:CDS | 40.0% |
| ! | GCAGTTACTGAACTTTTGGA+AGG | - | chr4.4:30898410-30898429 | MS.gene56555:CDS | 40.0% |
| ! | TCTAATGGTTTTCATGGTGG+TGG | - | chr4.4:30897844-30897863 | MS.gene56555:CDS | 40.0% |
| !!! | AGCTCTTCTTCCTTGTTTTG+TGG | - | chr4.4:30899006-30899025 | MS.gene56555:CDS | 40.0% |
| ACAAAAAAAGGAGGAGGAGG+AGG | - | chr4.4:30897445-30897464 | MS.gene56555:CDS | 45.0% | |
| ACCAAGAGAACAAGCTACTG+TGG | + | chr4.4:30898660-30898679 | None:intergenic | 45.0% | |
| AGGGTAATATGCCAACAGTG+TGG | - | chr4.4:30897335-30897354 | MS.gene56555:CDS | 45.0% | |
| AGTGGTGGTAACAATGCTAG+TGG | - | chr4.4:30897667-30897686 | MS.gene56555:CDS | 45.0% | |
| CAAGAAGGGATTAACAGTGG+TGG | - | chr4.4:30897652-30897671 | MS.gene56555:CDS | 45.0% | |
| GACACCTAGGATGTTTCTTC+TGG | + | chr4.4:30898601-30898620 | None:intergenic | 45.0% | |
| GCTAAGAAGGAGTTGAAAGG+TGG | - | chr4.4:30898752-30898771 | MS.gene56555:CDS | 45.0% | |
| GCTTGTTCTCTTGGTCTCAA+TGG | - | chr4.4:30898665-30898684 | MS.gene56555:CDS | 45.0% | |
| TTTCCATCAGCTAGACACCT+AGG | + | chr4.4:30898614-30898633 | None:intergenic | 45.0% | |
| ! | GAGGAAGATCAGGTTGTTCA+AGG | - | chr4.4:30897467-30897486 | MS.gene56555:CDS | 45.0% |
| ! | GGGTCTAATGGTTTTCATGG+TGG | - | chr4.4:30897841-30897860 | MS.gene56555:CDS | 45.0% |
| !! | ACCACAGTAGCTTGTTCTCT+TGG | - | chr4.4:30898656-30898675 | MS.gene56555:CDS | 45.0% |
| !! | ACTTTAAGACCTGGTACACC+TGG | - | chr4.4:30897727-30897746 | MS.gene56555:CDS | 45.0% |
| AAAAAAGGAGGAGGAGGAGG+AGG | - | chr4.4:30897448-30897467 | MS.gene56555:CDS | 50.0% | |
| AGTGGTGGTAGTAGTAGTGG+TGG | - | chr4.4:30897685-30897704 | MS.gene56555:CDS | 50.0% | |
| CATCCTAGGTGTCTAGCTGA+TGG | - | chr4.4:30898608-30898627 | MS.gene56555:CDS | 50.0% | |
| CTCTCTCTATTCTGCCACAG+TGG | + | chr4.4:30898496-30898515 | None:intergenic | 50.0% | |
| GATCTTGGACTGCAACTTGG+TGG | + | chr4.4:30897547-30897566 | None:intergenic | 50.0% | |
| GCTAGTGGTGGTAGTAGTAG+TGG | - | chr4.4:30897682-30897701 | MS.gene56555:CDS | 50.0% | |
| GGACTTCTTCAACTCCTCCA+AGG | - | chr4.4:30897794-30897813 | MS.gene56555:CDS | 50.0% | |
| GGTGGTAACAATGCTAGTGG+TGG | - | chr4.4:30897670-30897689 | MS.gene56555:CDS | 50.0% | |
| TACCAGCATGCTTGGAGAGA+TGG | + | chr4.4:30897981-30898000 | None:intergenic | 50.0% | |
| CACCATCTCTCCAAGCATGC+TGG | - | chr4.4:30897976-30897995 | MS.gene56555:intron | 55.0% | |
| ! | TGCATTGTAGGGTGTCCTCC+AGG | + | chr4.4:30897754-30897773 | None:intergenic | 55.0% |
| AGACCTGGTACACCTGGTCC+TGG | - | chr4.4:30897733-30897752 | MS.gene56555:CDS | 60.0% | |
| GGAGGAGGAGGAGGAAGATC+AGG | - | chr4.4:30897457-30897476 | MS.gene56555:CDS | 60.0% | |
| CCTCCAGGACCAGGTGTACC+AGG | + | chr4.4:30897739-30897758 | None:intergenic | 65.0% | |
| CCTGGTACACCTGGTCCTGG+AGG | - | chr4.4:30897736-30897755 | MS.gene56555:CDS | 65.0% | |
| ! | GTAGGGTGTCCTCCAGGACC+AGG | + | chr4.4:30897748-30897767 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30897283 | 30899045 | 30897283 | ID=MS.gene56555 |
| chr4.4 | mRNA | 30897283 | 30899045 | 30897283 | ID=MS.gene56555.t1;Parent=MS.gene56555 |
| chr4.4 | exon | 30898331 | 30899045 | 30898331 | ID=MS.gene56555.t1.exon1;Parent=MS.gene56555.t1 |
| chr4.4 | CDS | 30898331 | 30899045 | 30898331 | ID=cds.MS.gene56555.t1;Parent=MS.gene56555.t1 |
| chr4.4 | exon | 30897283 | 30897914 | 30897283 | ID=MS.gene56555.t1.exon2;Parent=MS.gene56555.t1 |
| chr4.4 | CDS | 30897283 | 30897914 | 30897283 | ID=cds.MS.gene56555.t1;Parent=MS.gene56555.t1 |
| Gene Sequence |
| Protein sequence |
