Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47516.t1 | XP_003608067.1 | 96.9 | 160 | 2 | 1 | 1 | 157 | 1 | 160 | 3.10E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47516.t1 | A8YXY3 | 35.6 | 135 | 84 | 3 | 19 | 152 | 28 | 160 | 1.8e-17 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47516.t1 | G7JNL6 | 96.9 | 160 | 2 | 1 | 1 | 157 | 1 | 160 | 2.2e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene47516 | 0.813962 | 1.96E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene47516 | 0.805556 | 1.26E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene47516 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene47516 | 0.801508 | 8.71E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene47516 | 0.819085 | 1.40E-52 | -1.69E-46 |
| MS.gene050384 | MS.gene47516 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene47516 | 0.814413 | 1.56E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene47516 | -0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene47516 | 0.830563 | 2.74E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene47516 | 0.811928 | 5.48E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene47516 | 0.809879 | 1.52E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene47516 | 0.811725 | 6.06E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene47516 | 0.810891 | 9.20E-51 | -1.69E-46 |
| MS.gene050778 | MS.gene47516 | 0.818103 | 2.33E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene47516 | 0.847808 | 9.15E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene47516 | 0.832741 | 7.95E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene47516 | 0.801292 | 9.65E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene47516 | 0.815784 | 7.74E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene47516 | 0.8393 | 1.72E-57 | -1.69E-46 |
| MS.gene051180 | MS.gene47516 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene47516 | 0.80031 | 1.53E-48 | -1.69E-46 |
| MS.gene051343 | MS.gene47516 | 0.813631 | 2.32E-51 | -1.69E-46 |
| MS.gene051577 | MS.gene47516 | 0.816794 | 4.60E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene47516 | 0.818565 | 1.83E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene47516 | 0.858673 | 7.01E-63 | -1.69E-46 |
| MS.gene051789 | MS.gene47516 | 0.814748 | 1.32E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene47516 | 0.802811 | 4.70E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene47516 | 0.802416 | 5.67E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene47516 | 0.801411 | 9.12E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene47516 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene47516 | 0.815304 | 9.90E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene47516 | 0.819005 | 1.46E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene47516 | 0.823728 | 1.18E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene47516 | 0.817557 | 3.10E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene47516 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene47516 | 0.800654 | 1.30E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene47516 | 0.822423 | 2.39E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene47516 | 0.804146 | 2.49E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene47516 | 0.829509 | 4.95E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene47516 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene47516 | 0.811476 | 6.87E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene47516 | 0.814938 | 1.19E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene47516 | 0.814269 | 1.68E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene47516 | 0.800484 | 1.41E-48 | -1.69E-46 |
| MS.gene056432 | MS.gene47516 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene47516 | 0.809832 | 1.56E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene47516 | 0.854489 | 1.19E-61 | -1.69E-46 |
| MS.gene057057 | MS.gene47516 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene47516 | 0.801904 | 7.23E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene47516 | 0.80639 | 8.42E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene47516 | 0.81062 | 1.05E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene47516 | 0.812943 | 3.29E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene47516 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene47516 | 0.806804 | 6.88E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene47516 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene058638 | MS.gene47516 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene47516 | 0.813015 | 3.17E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene47516 | 0.825998 | 3.45E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene47516 | 0.864707 | 1.00E-64 | -1.69E-46 |
| MS.gene058982 | MS.gene47516 | 0.816251 | 6.09E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene47516 | 0.833282 | 5.83E-56 | -1.69E-46 |
| MS.gene059713 | MS.gene47516 | 0.847574 | 1.06E-59 | -1.69E-46 |
| MS.gene059965 | MS.gene47516 | 0.804492 | 2.10E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene47516 | 0.813906 | 2.02E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene47516 | 0.8294 | 5.26E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene47516 | 0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene47516 | 0.80931 | 2.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47516.t1 | MTR_4g087310 | 97.500 | 160 | 1 | 1 | 1 | 157 | 1 | 160 | 2.72e-112 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47516.t1 | AT1G05720 | 72.611 | 157 | 42 | 1 | 1 | 156 | 6 | 162 | 1.18e-87 | 253 |
Find 35 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACTCTGGAGCATTAT+TGG | 0.207252 | 4.3:+25843367 | MS.gene47516:CDS |
| ACTCTTGCAGAATTGATAAT+TGG | 0.219661 | 4.3:+25844150 | MS.gene47516:intron |
| GAACTTTAACTGATGGAAAC+TGG | 0.345126 | 4.3:-25843454 | None:intergenic |
| TCAATAAAGCCAACAACTTC+AGG | 0.346370 | 4.3:-25843419 | None:intergenic |
| ACCTGATTGTTTCCTTATGT+TGG | 0.348246 | 4.3:-25843526 | None:intergenic |
| TCCACCAAAGTTAATTATGC+TGG | 0.415115 | 4.3:+25843493 | MS.gene47516:CDS |
| TACCTTGGTAGTGGCATCAT+TGG | 0.416461 | 4.3:-25842120 | None:intergenic |
| TCTGTTTCACGGTGCTTCAT+CGG | 0.436576 | 4.3:+25841857 | MS.gene47516:CDS |
| TGCGAGAATCTCGGTTTCAC+CGG | 0.449146 | 4.3:+25841900 | MS.gene47516:CDS |
| TTATCCAGCATAATTAACTT+TGG | 0.453562 | 4.3:-25843497 | None:intergenic |
| TCCAGCATAATTAACTTTGG+TGG | 0.454464 | 4.3:-25843494 | None:intergenic |
| GGTGGTTGTGGTGGTGGTGT+TGG | 0.461002 | 4.3:+25841833 | MS.gene47516:CDS |
| GGATAATGCGGGCCAACATA+AGG | 0.461211 | 4.3:+25843514 | MS.gene47516:CDS |
| ATCAGAGCACAAAGCGAGTC+CGG | 0.462984 | 4.3:-25841919 | None:intergenic |
| CGTTGCGGTGGTTGTGGTGG+TGG | 0.482660 | 4.3:+25841827 | MS.gene47516:CDS |
| GTGGTGTTGGCTCTGTTTCA+CGG | 0.484427 | 4.3:+25841846 | MS.gene47516:CDS |
| ACCTTTGTCTTTGACATACT+CGG | 0.488519 | 4.3:-25841955 | None:intergenic |
| GAAAGTCGTTGCGGTGGTTG+TGG | 0.489350 | 4.3:+25841821 | MS.gene47516:CDS |
| ACATATTGAACTTTAACTGA+TGG | 0.491289 | 4.3:-25843461 | None:intergenic |
| GTTAATTATGCTGGATAATG+CGG | 0.493031 | 4.3:+25843502 | MS.gene47516:CDS |
| TAATTGTAGATTACATACTC+TGG | 0.513437 | 4.3:+25843356 | MS.gene47516:intron |
| CAGAGAGAAGGTGAAACCTT+CGG | 0.521725 | 4.3:+25844199 | MS.gene47516:CDS |
| TCAAGAGAATGCGAGAATCT+CGG | 0.542359 | 4.3:+25841891 | MS.gene47516:CDS |
| GCCAACATAAGGAAACAATC+AGG | 0.546718 | 4.3:+25843525 | MS.gene47516:CDS |
| AATGGATCATACCTTGGTAG+TGG | 0.566233 | 4.3:-25842129 | None:intergenic |
| TTAATTATGCTGGATAATGC+GGG | 0.581451 | 4.3:+25843503 | MS.gene47516:CDS |
| TCCGAGTATGTCAAAGACAA+AGG | 0.585919 | 4.3:+25841954 | MS.gene47516:CDS |
| ACTTCTCAAACAGCTGCCGA+AGG | 0.598065 | 4.3:-25844215 | None:intergenic |
| AGTCGTTGCGGTGGTTGTGG+TGG | 0.613012 | 4.3:+25841824 | MS.gene47516:CDS |
| AGATTGTTTGAAATGTTGCA+CGG | 0.615839 | 4.3:+25842091 | MS.gene47516:CDS |
| CATTATTGGAAGTTTGCATG+AGG | 0.621897 | 4.3:+25843381 | MS.gene47516:CDS |
| ACTGCAGTATCTCAGAGAGA+AGG | 0.645807 | 4.3:+25844187 | MS.gene47516:CDS |
| CTCCAATGATGCCACTACCA+AGG | 0.663891 | 4.3:+25842118 | MS.gene47516:CDS |
| AATGAAGAAAGTCGTTGCGG+TGG | 0.675037 | 4.3:+25841815 | None:intergenic |
| AGAAATGAAGAAAGTCGTTG+CGG | 0.691962 | 4.3:+25841812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTAAGCTAAAAATT+TGG | + | chr4.3:25842052-25842071 | MS.gene47516:intron | 15.0% |
| !! | CAATTAGAGTAAAAAATTAA+TGG | - | chr4.3:25842317-25842336 | None:intergenic | 15.0% |
| !! | CATAAAAAAAAAACTCTAAA+TGG | - | chr4.3:25843907-25843926 | None:intergenic | 15.0% |
| !!! | CATTTAGAGTTTTTTTTTTA+TGG | + | chr4.3:25843905-25843924 | MS.gene47516:intron | 15.0% |
| !! | ATTTCTATAATTATCACCAT+TGG | - | chr4.3:25842439-25842458 | None:intergenic | 20.0% |
| !! | TAATTACAATAATGTTGCAT+GGG | + | chr4.3:25842845-25842864 | MS.gene47516:intron | 20.0% |
| !! | TCCAAAAACTAAAATTGATT+AGG | - | chr4.3:25842016-25842035 | None:intergenic | 20.0% |
| !! | TTAATTACAATAATGTTGCA+TGG | + | chr4.3:25842844-25842863 | MS.gene47516:intron | 20.0% |
| !!! | ATCAATTTTAGTTTTTGGAT+TGG | + | chr4.3:25842017-25842036 | MS.gene47516:intron | 20.0% |
| !!! | TCCTAATCAATTTTAGTTTT+TGG | + | chr4.3:25842012-25842031 | MS.gene47516:intron | 20.0% |
| ! | AAATCTTGTAAAACAGCTAT+TGG | + | chr4.3:25843860-25843879 | MS.gene47516:intron | 25.0% |
| ! | AATTACAATAATGTTGCATG+GGG | + | chr4.3:25842846-25842865 | MS.gene47516:intron | 25.0% |
| ! | ACATATTGAACTTTAACTGA+TGG | - | chr4.3:25843464-25843483 | None:intergenic | 25.0% |
| ! | ACTTACCAAACATATTGTTA+AGG | + | chr4.3:25842367-25842386 | MS.gene47516:intron | 25.0% |
| ! | ATAAAATAACACTGTGCTTA+TGG | + | chr4.3:25843789-25843808 | MS.gene47516:intron | 25.0% |
| ! | ATTACCAACAATAATAGCAT+TGG | + | chr4.3:25842917-25842936 | MS.gene47516:intron | 25.0% |
| ! | TAAAAATTTGGTTGCAGAAT+TGG | + | chr4.3:25842064-25842083 | MS.gene47516:intron | 25.0% |
| ! | TAATTGTAGATTACATACTC+TGG | + | chr4.3:25843356-25843375 | MS.gene47516:intron | 25.0% |
| ! | TACATCATCACTTAAACTTA+AGG | - | chr4.3:25842216-25842235 | None:intergenic | 25.0% |
| ! | TGCTTCAAAACTTTGATATT+GGG | - | chr4.3:25843209-25843228 | None:intergenic | 25.0% |
| ! | TTATCCAGCATAATTAACTT+TGG | - | chr4.3:25843500-25843519 | None:intergenic | 25.0% |
| ! | TTGCTTCAAAACTTTGATAT+TGG | - | chr4.3:25843210-25843229 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr4.3:25842615-25842634 | MS.gene47516:intron | 25.0% |
| !! | CATGATTTTCAATCTATTTC+TGG | + | chr4.3:25842970-25842989 | MS.gene47516:intron | 25.0% |
| !! | TTCAAGTTCATACTTATTTC+TGG | - | chr4.3:25843950-25843969 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTATGGTTGCA+TGG | + | chr4.3:25843913-25843932 | MS.gene47516:intron | 25.0% |
| !!! | TGGTTTTCAAGAATTTTCAA+AGG | + | chr4.3:25842990-25843009 | MS.gene47516:intron | 25.0% |
| !!! | TTGGTTTTAAATTGATCTCA+AGG | + | chr4.3:25843592-25843611 | MS.gene47516:intron | 25.0% |
| !!! | TTTTGGATTGGATTTTTGTT+AGG | + | chr4.3:25842029-25842048 | MS.gene47516:intron | 25.0% |
| AAAATACAAGCACCTTCAAT+GGG | + | chr4.3:25842235-25842254 | MS.gene47516:intron | 30.0% | |
| ACAACCAATGCTATTATTGT+TGG | - | chr4.3:25842924-25842943 | None:intergenic | 30.0% | |
| ATAACTATCGTCCAAAAACT+GGG | - | chr4.3:25843322-25843341 | None:intergenic | 30.0% | |
| ATCAAACATTGAGGTAAAGT+TGG | - | chr4.3:25843179-25843198 | None:intergenic | 30.0% | |
| ATCACTTAAACTTAAGGCAA+CGG | - | chr4.3:25842210-25842229 | None:intergenic | 30.0% | |
| ATTACAATAATGTTGCATGG+GGG | + | chr4.3:25842847-25842866 | MS.gene47516:intron | 30.0% | |
| CCAATATGTAATGAAGGAAA+TGG | - | chr4.3:25843047-25843066 | None:intergenic | 30.0% | |
| CCATTTCCTTCATTACATAT+TGG | + | chr4.3:25843044-25843063 | MS.gene47516:intron | 30.0% | |
| CTATCTCCAATATGTAATGA+AGG | - | chr4.3:25843053-25843072 | None:intergenic | 30.0% | |
| CTTCAAAGTAATGTATACAG+TGG | - | chr4.3:25842290-25842309 | None:intergenic | 30.0% | |
| CTTCATTACATATTGGAGAT+AGG | + | chr4.3:25843051-25843070 | MS.gene47516:intron | 30.0% | |
| CTTGTGGTTTATAGTTAGTT+TGG | + | chr4.3:25843573-25843592 | MS.gene47516:intron | 30.0% | |
| GAAATTAGAGTTAGCGAAAA+TGG | - | chr4.3:25842150-25842169 | None:intergenic | 30.0% | |
| GTTAATTATGCTGGATAATG+CGG | + | chr4.3:25843502-25843521 | MS.gene47516:CDS | 30.0% | |
| TAAAATACAAGCACCTTCAA+TGG | + | chr4.3:25842234-25842253 | MS.gene47516:intron | 30.0% | |
| TAACTATAAACCACAAGAAC+AGG | - | chr4.3:25843570-25843589 | None:intergenic | 30.0% | |
| TAATACAATTCTGCTAATGC+TGG | + | chr4.3:25843690-25843709 | MS.gene47516:intron | 30.0% | |
| TAGGAAATCATGCGAAATTA+AGG | + | chr4.3:25843070-25843089 | MS.gene47516:intron | 30.0% | |
| TATAACTATCGTCCAAAAAC+TGG | - | chr4.3:25843323-25843342 | None:intergenic | 30.0% | |
| TTAATTATGCTGGATAATGC+GGG | + | chr4.3:25843503-25843522 | MS.gene47516:CDS | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr4.3:25842584-25842603 | None:intergenic | 30.0% | |
| TTCGTCCTTAACAATATGTT+TGG | - | chr4.3:25842375-25842394 | None:intergenic | 30.0% | |
| TTGTTAAGGACGAATTACTT+CGG | + | chr4.3:25842381-25842400 | MS.gene47516:intron | 30.0% | |
| ! | AACTCTAATTTCGATTCGAT+AGG | + | chr4.3:25842158-25842177 | MS.gene47516:intron | 30.0% |
| ! | ACTCTTGCAGAATTGATAAT+TGG | + | chr4.3:25844150-25844169 | MS.gene47516:intron | 30.0% |
| ! | AGATTGTTTGAAATGTTGCA+CGG | + | chr4.3:25842091-25842110 | MS.gene47516:CDS | 30.0% |
| !!! | TTTTGAAGCAACGAAATATC+AGG | + | chr4.3:25843219-25843238 | MS.gene47516:intron | 30.0% |
| AAATACAAGCACCTTCAATG+GGG | + | chr4.3:25842236-25842255 | MS.gene47516:intron | 35.0% | |
| ACCTGATTGTTTCCTTATGT+TGG | - | chr4.3:25843529-25843548 | None:intergenic | 35.0% | |
| ACCTTTGTCTTTGACATACT+CGG | - | chr4.3:25841958-25841977 | None:intergenic | 35.0% | |
| ATGGTAACAACATGATTGTG+TGG | - | chr4.3:25843028-25843047 | None:intergenic | 35.0% | |
| ATTCGTTAGTGACATGCATT+TGG | + | chr4.3:25842457-25842476 | MS.gene47516:intron | 35.0% | |
| CATTATTGGAAGTTTGCATG+AGG | + | chr4.3:25843381-25843400 | MS.gene47516:CDS | 35.0% | |
| GAACTTTAACTGATGGAAAC+TGG | - | chr4.3:25843457-25843476 | None:intergenic | 35.0% | |
| GAGTGCTTTACCAACTAATT+GGG | - | chr4.3:25843754-25843773 | None:intergenic | 35.0% | |
| TAAACTTAAGGCAACGGTAA+TGG | - | chr4.3:25842204-25842223 | None:intergenic | 35.0% | |
| TAACTATCGTCCAAAAACTG+GGG | - | chr4.3:25843321-25843340 | None:intergenic | 35.0% | |
| TCAATAAAGCCAACAACTTC+AGG | - | chr4.3:25843422-25843441 | None:intergenic | 35.0% | |
| TCCACCAAAGTTAATTATGC+TGG | + | chr4.3:25843493-25843512 | MS.gene47516:CDS | 35.0% | |
| TCCACTTAAGCCATCTATAA+CGG | - | chr4.3:25842265-25842284 | None:intergenic | 35.0% | |
| TCCAGCATAATTAACTTTGG+TGG | - | chr4.3:25843497-25843516 | None:intergenic | 35.0% | |
| TGAGTGCTTTACCAACTAAT+TGG | - | chr4.3:25843755-25843774 | None:intergenic | 35.0% | |
| TTGCATTTGTCCCAATTAGT+TGG | + | chr4.3:25843741-25843760 | MS.gene47516:intron | 35.0% | |
| ! | ACATTGAGGTAAAGTTGGTT+AGG | - | chr4.3:25843174-25843193 | None:intergenic | 35.0% |
| ! | ATTGAGGTAAAGTTGGTTAG+GGG | - | chr4.3:25843172-25843191 | None:intergenic | 35.0% |
| ! | CATTGAGGTAAAGTTGGTTA+GGG | - | chr4.3:25843173-25843192 | None:intergenic | 35.0% |
| ! | CATTTGGAACTTATGAGTTC+TGG | + | chr4.3:25842473-25842492 | MS.gene47516:intron | 35.0% |
| ! | GTTTTCTATCCTGAAGTTGT+TGG | + | chr4.3:25843410-25843429 | MS.gene47516:CDS | 35.0% |
| !! | ATAAGGTTGGTTTAGTGGTT+GGG | + | chr4.3:25842873-25842892 | MS.gene47516:intron | 35.0% |
| !! | GGAATATAAGGTTGGTTTAG+TGG | + | chr4.3:25842868-25842887 | MS.gene47516:intron | 35.0% |
| !! | TACATACTCTGGAGCATTAT+TGG | + | chr4.3:25843367-25843386 | MS.gene47516:CDS | 35.0% |
| !! | TATAAGGTTGGTTTAGTGGT+TGG | + | chr4.3:25842872-25842891 | MS.gene47516:intron | 35.0% |
| AATAAACGAAACACCGCCTT+AGG | - | chr4.3:25842784-25842803 | None:intergenic | 40.0% | |
| AATGGATCATACCTTGGTAG+TGG | - | chr4.3:25842132-25842151 | None:intergenic | 40.0% | |
| ACCGTTATAGATGGCTTAAG+TGG | + | chr4.3:25842261-25842280 | MS.gene47516:intron | 40.0% | |
| AGCGAAAATGGATCATACCT+TGG | - | chr4.3:25842138-25842157 | None:intergenic | 40.0% | |
| AGGAAATGTTGCTGATGCTT+AGG | + | chr4.3:25842178-25842197 | MS.gene47516:intron | 40.0% | |
| AGGGAAGGGAAATGTAAGAA+AGG | + | chr4.3:25842705-25842724 | MS.gene47516:intron | 40.0% | |
| ATGTTGCATGGGGGAATATA+AGG | + | chr4.3:25842856-25842875 | MS.gene47516:intron | 40.0% | |
| CAGAACCCATCTTATGAGTT+CGG | - | chr4.3:25842345-25842364 | None:intergenic | 40.0% | |
| CTGGGGATAGAGGTAATATA+TGG | - | chr4.3:25843304-25843323 | None:intergenic | 40.0% | |
| CTTGAATATCCACAGCAACT+CGG | + | chr4.3:25843964-25843983 | MS.gene47516:intron | 40.0% | |
| GCCAACATAAGGAAACAATC+AGG | + | chr4.3:25843525-25843544 | MS.gene47516:CDS | 40.0% | |
| GGCAAGCTAATCAAACATTG+AGG | - | chr4.3:25843188-25843207 | None:intergenic | 40.0% | |
| GGGATAGAGGTAATATATGG+TGG | - | chr4.3:25843301-25843320 | None:intergenic | 40.0% | |
| TCAAGAGAATGCGAGAATCT+CGG | + | chr4.3:25841891-25841910 | MS.gene47516:CDS | 40.0% | |
| TCCGAGTATGTCAAAGACAA+AGG | + | chr4.3:25841954-25841973 | MS.gene47516:CDS | 40.0% | |
| TGCAACCGAACTCATAAGAT+GGG | + | chr4.3:25842337-25842356 | MS.gene47516:intron | 40.0% | |
| ! | AATGATTTTCCGAGTTGCTG+TGG | - | chr4.3:25843976-25843995 | None:intergenic | 40.0% |
| ! | ATTGATCTCAAGGCGTCTAT+TGG | + | chr4.3:25843602-25843621 | MS.gene47516:intron | 40.0% |
| ! | CACGTTGCAATCTTTTCCAA+TGG | + | chr4.3:25842420-25842439 | MS.gene47516:intron | 40.0% |
| ! | TTACCTCTATCCCCAGTTTT+TGG | + | chr4.3:25843308-25843327 | MS.gene47516:intron | 40.0% |
| !! | TAAGGTTGGTTTAGTGGTTG+GGG | + | chr4.3:25842874-25842893 | MS.gene47516:intron | 40.0% |
| AAACTCACAAACAGGGCCTA+AGG | + | chr4.3:25842765-25842784 | MS.gene47516:intron | 45.0% | |
| AATGGGGCAACCGTTATAGA+TGG | + | chr4.3:25842252-25842271 | MS.gene47516:intron | 45.0% | |
| ACAAGAACAGGATGCAAGCA+GGG | - | chr4.3:25843558-25843577 | None:intergenic | 45.0% | |
| ACTGCAGTATCTCAGAGAGA+AGG | + | chr4.3:25844187-25844206 | MS.gene47516:CDS | 45.0% | |
| AGGCGTCTATTGGAATGCTA+TGG | + | chr4.3:25843612-25843631 | MS.gene47516:intron | 45.0% | |
| ATAGGAGGGGGGTAAAATGA+TGG | + | chr4.3:25842682-25842701 | MS.gene47516:intron | 45.0% | |
| CAGAGAGAAGGTGAAACCTT+CGG | + | chr4.3:25844199-25844218 | MS.gene47516:CDS | 45.0% | |
| CCTCCTATGAAGTACGGATA+CGG | - | chr4.3:25842670-25842689 | None:intergenic | 45.0% | |
| CCTCTCCAAACTCACAAACA+GGG | + | chr4.3:25842758-25842777 | MS.gene47516:intron | 45.0% | |
| CGTATCCGTACTTCATAGGA+GGG | + | chr4.3:25842668-25842687 | MS.gene47516:intron | 45.0% | |
| GGAAAAGATTGCAACGTGCA+AGG | - | chr4.3:25842418-25842437 | None:intergenic | 45.0% | |
| GTATCCGTACTTCATAGGAG+GGG | + | chr4.3:25842669-25842688 | MS.gene47516:intron | 45.0% | |
| GTGCAACCGAACTCATAAGA+TGG | + | chr4.3:25842336-25842355 | MS.gene47516:intron | 45.0% | |
| GTTTGTGAGTTTGGAGAGGA+GGG | - | chr4.3:25842757-25842776 | None:intergenic | 45.0% | |
| TATAACGGTTGCCCCATTGA+AGG | - | chr4.3:25842250-25842269 | None:intergenic | 45.0% | |
| TATCCGTACTTCATAGGAGG+GGG | + | chr4.3:25842670-25842689 | MS.gene47516:intron | 45.0% | |
| TCCTCTCCAAACTCACAAAC+AGG | + | chr4.3:25842757-25842776 | MS.gene47516:intron | 45.0% | |
| TCTGTTTCACGGTGCTTCAT+CGG | + | chr4.3:25841857-25841876 | MS.gene47516:CDS | 45.0% | |
| TGCATGGGGGAATATAAGGT+TGG | + | chr4.3:25842860-25842879 | MS.gene47516:intron | 45.0% | |
| TGTCCGTATCCGTACTTCAT+AGG | + | chr4.3:25842664-25842683 | MS.gene47516:intron | 45.0% | |
| TGTTTGTGAGTTTGGAGAGG+AGG | - | chr4.3:25842758-25842777 | None:intergenic | 45.0% | |
| TTAGGCCCTGTTTGTGAGTT+TGG | - | chr4.3:25842766-25842785 | None:intergenic | 45.0% | |
| TTTGTGAGTTTGGAGAGGAG+GGG | - | chr4.3:25842756-25842775 | None:intergenic | 45.0% | |
| ! | GGGTAAAATGATGGAGGGAA+GGG | + | chr4.3:25842691-25842710 | MS.gene47516:intron | 45.0% |
| !! | TACCTTGGTAGTGGCATCAT+TGG | - | chr4.3:25842123-25842142 | None:intergenic | 45.0% |
| ACTCTGTTCGCGAGTTTGGA+GGG | + | chr4.3:25842505-25842524 | MS.gene47516:intron | 50.0% | |
| AGGAGGGGAATGAAGAGCTT+CGG | - | chr4.3:25842741-25842760 | None:intergenic | 50.0% | |
| ATCAGAGCACAAAGCGAGTC+CGG | - | chr4.3:25841922-25841941 | None:intergenic | 50.0% | |
| ATCCGTACTTCATAGGAGGG+GGG | + | chr4.3:25842671-25842690 | MS.gene47516:intron | 50.0% | |
| CAAACTCGCGAACAGAGTCT+TGG | - | chr4.3:25842503-25842522 | None:intergenic | 50.0% | |
| CAAGACTCTGTTCGCGAGTT+TGG | + | chr4.3:25842501-25842520 | MS.gene47516:intron | 50.0% | |
| CACAAGAACAGGATGCAAGC+AGG | - | chr4.3:25843559-25843578 | None:intergenic | 50.0% | |
| CCCTGTTTGTGAGTTTGGAG+AGG | - | chr4.3:25842761-25842780 | None:intergenic | 50.0% | |
| CCGTATCCGTACTTCATAGG+AGG | + | chr4.3:25842667-25842686 | MS.gene47516:intron | 50.0% | |
| CGTCCAAAAACTGGGGATAG+AGG | - | chr4.3:25843314-25843333 | None:intergenic | 50.0% | |
| CTCCAATGATGCCACTACCA+AGG | + | chr4.3:25842118-25842137 | MS.gene47516:CDS | 50.0% | |
| CTGCTTGCATCCTGTTCTTG+TGG | + | chr4.3:25843557-25843576 | MS.gene47516:intron | 50.0% | |
| GGATAATGCGGGCCAACATA+AGG | + | chr4.3:25843514-25843533 | MS.gene47516:CDS | 50.0% | |
| GTCATGACACGCCTAATCCA+AGG | - | chr4.3:25842560-25842579 | None:intergenic | 50.0% | |
| TACCCCCCTCCTATGAAGTA+CGG | - | chr4.3:25842676-25842695 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | + | chr4.3:25842540-25842559 | MS.gene47516:intron | 50.0% | |
| TGAAGTACGGATACGGACAC+CGG | - | chr4.3:25842663-25842682 | None:intergenic | 50.0% | |
| TGCGAGAATCTCGGTTTCAC+CGG | + | chr4.3:25841900-25841919 | MS.gene47516:CDS | 50.0% | |
| ! | GAGGGGGGTAAAATGATGGA+GGG | + | chr4.3:25842686-25842705 | MS.gene47516:intron | 50.0% |
| ! | GGGGTAAAATGATGGAGGGA+AGG | + | chr4.3:25842690-25842709 | MS.gene47516:intron | 50.0% |
| !! | GTGGTGTTGGCTCTGTTTCA+CGG | + | chr4.3:25841846-25841865 | MS.gene47516:CDS | 50.0% |
| ACCGGACACAACACAGACAC+TGG | - | chr4.3:25842645-25842664 | None:intergenic | 55.0% | |
| AGGGGAATGAAGAGCTTCGG+GGG | - | chr4.3:25842738-25842757 | None:intergenic | 55.0% | |
| CTCACAAACAGGGCCTAAGG+CGG | + | chr4.3:25842768-25842787 | MS.gene47516:intron | 55.0% | |
| GAAAGTCGTTGCGGTGGTTG+TGG | + | chr4.3:25841821-25841840 | MS.gene47516:CDS | 55.0% | |
| GACTCTGTTCGCGAGTTTGG+AGG | + | chr4.3:25842504-25842523 | MS.gene47516:intron | 55.0% | |
| GAGGGGAATGAAGAGCTTCG+GGG | - | chr4.3:25842739-25842758 | None:intergenic | 55.0% | |
| GCACGGACACTCCTTGGATT+AGG | + | chr4.3:25842546-25842565 | MS.gene47516:intron | 55.0% | |
| GCCAGTGTCTGTGTTGTGTC+CGG | + | chr4.3:25842641-25842660 | MS.gene47516:intron | 55.0% | |
| GGAGGGGAATGAAGAGCTTC+GGG | - | chr4.3:25842740-25842759 | None:intergenic | 55.0% | |
| GGAGGGGGGTAAAATGATGG+AGG | + | chr4.3:25842685-25842704 | MS.gene47516:intron | 55.0% | |
| GTTCGCGAGTTTGGAGGGAA+GGG | + | chr4.3:25842510-25842529 | MS.gene47516:intron | 55.0% | |
| TGTTCGCGAGTTTGGAGGGA+AGG | + | chr4.3:25842509-25842528 | MS.gene47516:intron | 55.0% | |
| TTGGTTTAGTGGTTGGGGCG+GGG | + | chr4.3:25842879-25842898 | MS.gene47516:intron | 55.0% | |
| ! | GTTGGTTTAGTGGTTGGGGC+GGG | + | chr4.3:25842878-25842897 | MS.gene47516:intron | 55.0% |
| !! | GGTTGGTTTAGTGGTTGGGG+CGG | + | chr4.3:25842877-25842896 | MS.gene47516:intron | 55.0% |
| AGGGAGGGGGCTATGAAGCA+CGG | + | chr4.3:25842529-25842548 | MS.gene47516:intron | 60.0% | |
| AGTCGTTGCGGTGGTTGTGG+TGG | + | chr4.3:25841824-25841843 | MS.gene47516:CDS | 60.0% | |
| CGAGTTTGGAGGGAAGGGAG+GGG | + | chr4.3:25842515-25842534 | MS.gene47516:intron | 60.0% | |
| GAGTTTGGAGGGAAGGGAGG+GGG | + | chr4.3:25842516-25842535 | MS.gene47516:intron | 60.0% | |
| GCGAGTTTGGAGGGAAGGGA+GGG | + | chr4.3:25842514-25842533 | MS.gene47516:intron | 60.0% | |
| TGGTTTAGTGGTTGGGGCGG+GGG | + | chr4.3:25842880-25842899 | MS.gene47516:intron | 60.0% | |
| !! | GGTGGTTGTGGTGGTGGTGT+TGG | + | chr4.3:25841833-25841852 | MS.gene47516:CDS | 60.0% |
| CGCGAGTTTGGAGGGAAGGG+AGG | + | chr4.3:25842513-25842532 | MS.gene47516:intron | 65.0% | |
| CGTTGCGGTGGTTGTGGTGG+TGG | + | chr4.3:25841827-25841846 | MS.gene47516:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25841816 | 25844232 | 25841816 | ID=MS.gene47516 |
| chr4.3 | mRNA | 25841816 | 25844232 | 25841816 | ID=MS.gene47516.t1;Parent=MS.gene47516 |
| chr4.3 | exon | 25841816 | 25841975 | 25841816 | ID=MS.gene47516.t1.exon1;Parent=MS.gene47516.t1 |
| chr4.3 | CDS | 25841816 | 25841975 | 25841816 | ID=cds.MS.gene47516.t1;Parent=MS.gene47516.t1 |
| chr4.3 | exon | 25842081 | 25842139 | 25842081 | ID=MS.gene47516.t1.exon2;Parent=MS.gene47516.t1 |
| chr4.3 | CDS | 25842081 | 25842139 | 25842081 | ID=cds.MS.gene47516.t1;Parent=MS.gene47516.t1 |
| chr4.3 | exon | 25843365 | 25843546 | 25843365 | ID=MS.gene47516.t1.exon3;Parent=MS.gene47516.t1 |
| chr4.3 | CDS | 25843365 | 25843546 | 25843365 | ID=cds.MS.gene47516.t1;Parent=MS.gene47516.t1 |
| chr4.3 | exon | 25844160 | 25844232 | 25844160 | ID=MS.gene47516.t1.exon4;Parent=MS.gene47516.t1 |
| chr4.3 | CDS | 25844160 | 25844232 | 25844160 | ID=cds.MS.gene47516.t1;Parent=MS.gene47516.t1 |
| Gene Sequence |
| Protein sequence |
