AlfalfaGEDB | MS.gene47955

M. sativa cultivar XinJiangDaYe / MS.gene47955

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47955.t1	XP_013446710.1	100	64	0	0	1	64	1	64	9.40E-25	122.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47955.t1	A0A072TTH9	100.0	64	0	0	1	64	1	64	6.8e-25	122.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene47955	0.800536	1.38E-48	-1.69E-46
MS.gene049255	MS.gene47955	0.837607	4.70E-57	-1.69E-46
MS.gene049340	MS.gene47955	0.810491	1.12E-50	-1.69E-46
MS.gene049341	MS.gene47955	0.860391	2.13E-63	-1.69E-46
MS.gene049382	MS.gene47955	0.837364	5.43E-57	-1.69E-46
MS.gene049501	MS.gene47955	0.810721	1.00E-50	-1.69E-46
MS.gene049756	MS.gene47955	0.831913	1.27E-55	-1.69E-46
MS.gene04984	MS.gene47955	0.811273	7.60E-51	-1.69E-46
MS.gene049887	MS.gene47955	0.82821	1.02E-54	-1.69E-46
MS.gene049979	MS.gene47955	0.81479	1.29E-51	-1.69E-46
MS.gene050277	MS.gene47955	0.875327	3.36E-68	-1.69E-46
MS.gene050303	MS.gene47955	0.816006	6.91E-52	-1.69E-46
MS.gene050438	MS.gene47955	0.846533	2.05E-59	-1.69E-46
MS.gene050586	MS.gene47955	0.806403	8.37E-50	-1.69E-46
MS.gene050719	MS.gene47955	0.856418	3.26E-62	-1.69E-46
MS.gene050721	MS.gene47955	0.861069	1.33E-63	-1.69E-46
MS.gene050724	MS.gene47955	0.846111	2.67E-59	-1.69E-46
MS.gene050778	MS.gene47955	0.801982	6.96E-49	-1.69E-46
MS.gene050780	MS.gene47955	0.830763	2.45E-55	-1.69E-46
MS.gene050807	MS.gene47955	0.827115	1.87E-54	-1.69E-46
MS.gene050815	MS.gene47955	0.868904	4.62E-66	-1.69E-46
MS.gene050838	MS.gene47955	0.825251	5.19E-54	-1.69E-46
MS.gene051063	MS.gene47955	0.874785	5.15E-68	-1.69E-46
MS.gene051243	MS.gene47955	0.825262	5.16E-54	-1.69E-46
MS.gene051245	MS.gene47955	0.862218	5.92E-64	-1.69E-46
MS.gene051247	MS.gene47955	0.825297	5.06E-54	-1.69E-46
MS.gene051328	MS.gene47955	0.865678	4.96E-65	-1.69E-46
MS.gene051330	MS.gene47955	0.812274	4.60E-51	-1.69E-46
MS.gene051349	MS.gene47955	0.820202	7.77E-53	-1.69E-46
MS.gene05134	MS.gene47955	0.823364	1.44E-53	-1.69E-46
MS.gene051577	MS.gene47955	0.806493	8.01E-50	-1.69E-46
MS.gene051626	MS.gene47955	0.803287	3.75E-49	-1.69E-46
MS.gene051633	MS.gene47955	0.848584	5.58E-60	-1.69E-46
MS.gene051746	MS.gene47955	0.849936	2.35E-60	-1.69E-46
MS.gene051748	MS.gene47955	0.846308	2.36E-59	-1.69E-46
MS.gene051756	MS.gene47955	0.819603	1.07E-52	-1.69E-46
MS.gene051757	MS.gene47955	0.887217	1.73E-72	-1.69E-46
MS.gene051789	MS.gene47955	0.815254	1.02E-51	-1.69E-46
MS.gene051850	MS.gene47955	0.806188	9.29E-50	-1.69E-46
MS.gene051903	MS.gene47955	0.842399	2.65E-58	-1.69E-46
MS.gene052012	MS.gene47955	0.809469	1.86E-50	-1.69E-46
MS.gene052020	MS.gene47955	0.8114	7.14E-51	-1.69E-46
MS.gene052133	MS.gene47955	0.832662	8.32E-56	-1.69E-46
MS.gene052202	MS.gene47955	0.813669	2.28E-51	-1.69E-46
MS.gene052256	MS.gene47955	0.805734	1.16E-49	-1.69E-46
MS.gene052286	MS.gene47955	0.844553	7.04E-59	-1.69E-46
MS.gene052302	MS.gene47955	0.856153	3.90E-62	-1.69E-46
MS.gene052376	MS.gene47955	0.856871	2.40E-62	-1.69E-46
MS.gene052665	MS.gene47955	0.84365	1.23E-58	-1.69E-46
MS.gene052856	MS.gene47955	0.834593	2.74E-56	-1.69E-46
MS.gene052879	MS.gene47955	0.827834	1.26E-54	-1.69E-46
MS.gene052880	MS.gene47955	0.806514	7.93E-50	-1.69E-46
MS.gene052896	MS.gene47955	0.814313	1.64E-51	-1.69E-46
MS.gene052947	MS.gene47955	0.841836	3.73E-58	-1.69E-46
MS.gene053074	MS.gene47955	0.81559	8.55E-52	-1.69E-46
MS.gene053109	MS.gene47955	0.825261	5.16E-54	-1.69E-46
MS.gene053132	MS.gene47955	0.81066	1.03E-50	-1.69E-46
MS.gene053437	MS.gene47955	0.824061	9.90E-54	-1.69E-46
MS.gene053581	MS.gene47955	0.805842	1.10E-49	-1.69E-46
MS.gene053630	MS.gene47955	0.816238	6.13E-52	-1.69E-46
MS.gene054185	MS.gene47955	0.804978	1.67E-49	-1.69E-46
MS.gene054250	MS.gene47955	0.804681	1.92E-49	-1.69E-46
MS.gene054472	MS.gene47955	0.818433	1.97E-52	-1.69E-46
MS.gene05462	MS.gene47955	0.803081	4.13E-49	-1.69E-46
MS.gene055133	MS.gene47955	0.818901	1.54E-52	-1.69E-46
MS.gene055162	MS.gene47955	0.83906	1.99E-57	-1.69E-46
MS.gene055424	MS.gene47955	0.800755	1.24E-48	-1.69E-46
MS.gene055466	MS.gene47955	0.819872	9.24E-53	-1.69E-46
MS.gene055468	MS.gene47955	0.826868	2.14E-54	-1.69E-46
MS.gene055512	MS.gene47955	0.819114	1.38E-52	-1.69E-46
MS.gene055580	MS.gene47955	-0.816907	4.34E-52	-1.69E-46
MS.gene055591	MS.gene47955	-0.817187	3.76E-52	-1.69E-46
MS.gene055623	MS.gene47955	0.805494	1.30E-49	-1.69E-46
MS.gene056043	MS.gene47955	-0.83075	2.46E-55	-1.69E-46
MS.gene056069	MS.gene47955	-0.836946	6.95E-57	-1.69E-46
MS.gene056432	MS.gene47955	0.866198	3.40E-65	-1.69E-46
MS.gene056580	MS.gene47955	0.824855	6.44E-54	-1.69E-46
MS.gene056584	MS.gene47955	0.806249	9.01E-50	-1.69E-46
MS.gene056601	MS.gene47955	0.824959	6.08E-54	-1.69E-46
MS.gene056631	MS.gene47955	0.888685	4.74E-73	-1.69E-46
MS.gene056760	MS.gene47955	0.86079	1.62E-63	-1.69E-46
MS.gene057057	MS.gene47955	0.851032	1.16E-60	-1.69E-46
MS.gene057094	MS.gene47955	0.836814	7.51E-57	-1.69E-46
MS.gene057140	MS.gene47955	0.883104	5.95E-71	-1.69E-46
MS.gene057234	MS.gene47955	0.872682	2.64E-67	-1.69E-46
MS.gene057260	MS.gene47955	0.830311	3.15E-55	-1.69E-46
MS.gene057705	MS.gene47955	0.800282	1.55E-48	-1.69E-46
MS.gene05795	MS.gene47955	0.811873	5.63E-51	-1.69E-46
MS.gene058055	MS.gene47955	0.848609	5.50E-60	-1.69E-46
MS.gene058084	MS.gene47955	0.865158	7.23E-65	-1.69E-46
MS.gene05809	MS.gene47955	0.835833	1.33E-56	-1.69E-46
MS.gene058168	MS.gene47955	0.832488	9.19E-56	-1.69E-46
MS.gene058182	MS.gene47955	0.859358	4.37E-63	-1.69E-46
MS.gene058238	MS.gene47955	0.84314	1.68E-58	-1.69E-46
MS.gene058798	MS.gene47955	0.811464	6.91E-51	-1.69E-46
MS.gene058851	MS.gene47955	0.818378	2.02E-52	-1.69E-46
MS.gene058906	MS.gene47955	0.989217	3.50E-177	-1.69E-46
MS.gene058982	MS.gene47955	0.807161	5.79E-50	-1.69E-46
MS.gene059249	MS.gene47955	0.83099	2.15E-55	-1.69E-46
MS.gene059713	MS.gene47955	0.812236	4.69E-51	-1.69E-46
MS.gene059898	MS.gene47955	0.852857	3.51E-61	-1.69E-46
MS.gene059937	MS.gene47955	0.829015	6.52E-55	-1.69E-46
MS.gene06001	MS.gene47955	0.903764	2.47E-79	-1.69E-46
MS.gene060165	MS.gene47955	0.811495	6.80E-51	-1.69E-46
MS.gene060429	MS.gene47955	0.850541	1.59E-60	-1.69E-46
MS.gene060586	MS.gene47955	0.809543	1.80E-50	-1.69E-46
MS.gene060619	MS.gene47955	0.837574	4.80E-57	-1.69E-46
MS.gene061145	MS.gene47955	0.808094	3.67E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47955.t1	MTR_8g089640	100.000	64	0	0	1	64	1	64	5.64e-42	130

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47955.t1	AT1G67785	77.419	62	13	1	1	62	1	61	2.22e-30	101

Find 0 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATATTTTGTGTTATTTAAT+TGG	-	57394:12884-12903	MS.gene47955:intron	10.0%
!!	AGTGAAATTGAAATTGAATA+TGG	+	57394:12670-12689	None:intergenic	20.0%
!!	ATTAATTTCACTCATTTAAG+AGG	-	57394:12707-12726	MS.gene47955:intron	20.0%
!	AATATGGAAATTATCCGAAA+AGG	+	57394:12654-12673	None:intergenic	25.0%
!	TCGTTATAAGATGAAATCTA+GGG	+	57394:12749-12768	None:intergenic	25.0%
!	TTCGTTATAAGATGAAATCT+AGG	+	57394:12750-12769	None:intergenic	25.0%
	ATGAAGAATTCGAAGAAGTA+AGG	+	57394:12602-12621	None:intergenic	30.0%
	TGAAGAATTCGAAGAAGTAA+GGG	+	57394:12601-12620	None:intergenic	30.0%
!	TGTGGTGAATTTGTTCTTTA+AGG	-	57394:12813-12832	MS.gene47955:intron	30.0%
!!!	CAATTCTTGCTATTCCTTTT+CGG	-	57394:12637-12656	MS.gene47955:intron	30.0%
	ATATGAAGAATCCTTCTGAC+TGG	+	57394:12989-13008	None:intergenic	35.0%
	GAAGAATTCGAAGAAGTAAG+GGG	+	57394:12600-12619	None:intergenic	35.0%
	GGGTCAGAGAACAATTAATT+CGG	-	57394:12956-12975	MS.gene47955:CDS	35.0%
	GGTCAGAGAACAATTAATTC+GGG	-	57394:12957-12976	MS.gene47955:CDS	35.0%
	TACTTATGTGTGCAATGTTG+AGG	-	57394:12774-12793	MS.gene47955:intron	35.0%
!	GGTAACTGAGTTATTGACTG+TGG	-	57394:12795-12814	MS.gene47955:intron	40.0%
!!	AACGTACTTTGGAATGTCCT+TGG	-	57394:12499-12518	MS.gene47955:CDS	40.0%
!!	ATTCGTTTTCTGGCAATCCA+TGG	-	57394:12526-12545	MS.gene47955:CDS	40.0%
	GTAATGTGTTGCAGCAAGAG+AGG	-	57394:12908-12927	MS.gene47955:CDS	45.0%
	GTGAAGGTTGCAACGTACTT+TGG	-	57394:12488-12507	MS.gene47955:CDS	45.0%
	AGAAGGAAGCGGAGATCAGA+AGG	-	57394:12935-12954	MS.gene47955:CDS	50.0%
	AGAGAGGTTGGAGAAGGAAG+CGG	-	57394:12924-12943	MS.gene47955:CDS	50.0%
	CCAGAAAACGAATGCTGCCA+AGG	+	57394:12519-12538	None:intergenic	50.0%
	CCAGACATGGACTTTGTCCA+TGG	+	57394:12546-12565	None:intergenic	50.0%
	CCATGGACAAAGTCCATGTC+TGG	-	57394:12543-12562	MS.gene47955:CDS	50.0%
	CGCTCTTCATCAGGACGAAA+AGG	-	57394:12568-12587	MS.gene47955:intron	50.0%
	GAAGGAAGCGGAGATCAGAA+GGG	-	57394:12936-12955	MS.gene47955:CDS	50.0%
	GATGAAGAGCGATCCAGACA+TGG	+	57394:12559-12578	None:intergenic	50.0%
	TGTCTGGATCGCTCTTCATC+AGG	-	57394:12559-12578	MS.gene47955:intron	50.0%
	TGTGTTGCAGCAAGAGAGGT+TGG	-	57394:12912-12931	MS.gene47955:CDS	50.0%
!	CCTTGGCAGCATTCGTTTTC+TGG	-	57394:12516-12535	MS.gene47955:CDS	50.0%
	GCAGCAAGAGAGGTTGGAGA+AGG	-	57394:12918-12937	MS.gene47955:CDS	55.0%
	TCGGGAGCAAGCCAGTCAGA+AGG	-	57394:12975-12994	MS.gene47955:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
57394	gene	12485	13011	12485	ID=MS.gene47955
57394	mRNA	12485	13011	12485	ID=MS.gene47955.t1;Parent=MS.gene47955
57394	exon	12907	13011	12907	ID=MS.gene47955.t1.exon1;Parent=MS.gene47955.t1
57394	CDS	12907	13011	12907	ID=cds.MS.gene47955.t1;Parent=MS.gene47955.t1
57394	exon	12485	12574	12485	ID=MS.gene47955.t1.exon2;Parent=MS.gene47955.t1
57394	CDS	12485	12574	12485	ID=cds.MS.gene47955.t1;Parent=MS.gene47955.t1

Gene Sequence

>MS.gene47955

ATGGTGAAGGTTGCAACGTACTTTGGAATGTCCTTGGCAGCATTCGTTTTCTGGCAATCCATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAGGACGAAAAGGTTCTTACCCCTTACTTCTTCGAATTCTTCATCTTCTAATCAAAATTCAATTCTTGCTATTCCTTTTCGGATAATTTCCATATTCAATTTCAATTTCACTATATTTGTTTTGTATTGATTAATTTCACTCATTTAAGAGGAAACAAAAATTTAAAACCCTAGATTTCATCTTATAACGAATTGTTACTTATGTGTGCAATGTTGAGGTAACTGAGTTATTGACTGTGGTGAATTTGTTCTTTAAGGATTTTGATTCGTATATTCATTCTGCAGTATTATTATGAATATTTGATCAATATTTTGTGTTATTTAATTGGTGTAATGTGTTGCAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTCAGAGAACAATTAATTCGGGAGCAAGCCAGTCAGAAGGATTCTTCATATTGA

Protein sequence

>MS.gene47955.t1

MVKVATYFGMSLAAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREQLIREQASQKDSSY