Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39586.t1 | XP_003608067.1 | 96.9 | 160 | 2 | 1 | 1 | 157 | 1 | 160 | 3.10E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39586.t1 | A8YXY3 | 35.6 | 135 | 84 | 3 | 19 | 152 | 28 | 160 | 1.8e-17 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39586.t1 | G7JNL6 | 96.9 | 160 | 2 | 1 | 1 | 157 | 1 | 160 | 2.2e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene39586 | 0.813867 | 2.06E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene39586 | 0.80695 | 6.41E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene39586 | 0.804979 | 1.67E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene39586 | 0.813661 | 2.29E-51 | -1.69E-46 |
| MS.gene050384 | MS.gene39586 | 0.823724 | 1.19E-53 | -1.69E-46 |
| MS.gene050386 | MS.gene39586 | 0.827878 | 1.23E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene39586 | 0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene39586 | 0.845234 | 4.61E-59 | -1.69E-46 |
| MS.gene050762 | MS.gene39586 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene39586 | 0.80307 | 4.15E-49 | -1.69E-46 |
| MS.gene050778 | MS.gene39586 | 0.805295 | 1.43E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene39586 | 0.821716 | 3.48E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene39586 | 0.834496 | 2.90E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene39586 | 0.832999 | 6.86E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene39586 | 0.842674 | 2.24E-58 | -1.69E-46 |
| MS.gene051328 | MS.gene39586 | 0.809047 | 2.29E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene39586 | 0.837879 | 4.01E-57 | -1.69E-46 |
| MS.gene051577 | MS.gene39586 | 0.816525 | 5.29E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene39586 | 0.805056 | 1.60E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene39586 | 0.835109 | 2.03E-56 | -1.69E-46 |
| MS.gene051789 | MS.gene39586 | 0.827009 | 1.98E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene39586 | 0.800139 | 1.66E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene39586 | 0.819991 | 8.68E-53 | -1.69E-46 |
| MS.gene052335 | MS.gene39586 | 0.828315 | 9.63E-55 | -1.69E-46 |
| MS.gene052397 | MS.gene39586 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene39586 | 0.81005 | 1.40E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene39586 | 0.823928 | 1.06E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene39586 | 0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene39586 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene39586 | 0.806052 | 9.92E-50 | -1.69E-46 |
| MS.gene053563 | MS.gene39586 | 0.815141 | 1.08E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene39586 | 0.828374 | 9.31E-55 | -1.69E-46 |
| MS.gene053590 | MS.gene39586 | 0.804285 | 2.32E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene39586 | 0.810866 | 9.32E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene39586 | 0.825182 | 5.39E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene39586 | 0.832785 | 7.75E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene39586 | 0.811806 | 5.82E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene39586 | 0.813595 | 2.36E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene39586 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene39586 | 0.81971 | 1.01E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene39586 | 0.804765 | 1.85E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene39586 | 0.815814 | 7.63E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene39586 | 0.854243 | 1.40E-61 | -1.69E-46 |
| MS.gene057057 | MS.gene39586 | 0.813527 | 2.45E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene39586 | 0.801508 | 8.71E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene39586 | 0.813508 | 2.47E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene39586 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene39586 | 0.813686 | 2.26E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene39586 | 0.818119 | 2.31E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene39586 | 0.827143 | 1.84E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene39586 | 0.821521 | 3.86E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene39586 | 0.804665 | 1.94E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene39586 | 0.852553 | 4.28E-61 | -1.69E-46 |
| MS.gene058982 | MS.gene39586 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene39586 | 0.856169 | 3.86E-62 | -1.69E-46 |
| MS.gene059713 | MS.gene39586 | 0.836685 | 8.10E-57 | -1.69E-46 |
| MS.gene05978 | MS.gene39586 | 0.80362 | 3.20E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene39586 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene39586 | 0.81304 | 3.13E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene39586 | 0.826597 | 2.49E-54 | -1.69E-46 |
| MS.gene061006 | MS.gene39586 | 0.827239 | 1.75E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39586.t1 | MTR_4g087310 | 97.500 | 160 | 1 | 1 | 1 | 157 | 1 | 160 | 2.72e-112 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39586.t1 | AT1G05720 | 72.611 | 157 | 42 | 1 | 1 | 156 | 6 | 162 | 1.18e-87 | 253 |
Find 35 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACTCTGGAGCATTAT+TGG | 0.207252 | 4.2:+24027685 | MS.gene39586:CDS |
| ACTCTTGCAGAATTGATAAT+TGG | 0.219661 | 4.2:+24028467 | MS.gene39586:intron |
| GAACTTTAACTGATGGAAAC+TGG | 0.345126 | 4.2:-24027772 | None:intergenic |
| TCAATAAAGCCAACAACTTC+AGG | 0.346370 | 4.2:-24027737 | None:intergenic |
| ACCTGATTGTTTCCTTATGT+TGG | 0.348246 | 4.2:-24027844 | None:intergenic |
| TCCACCAAAGTTAATTATGC+TGG | 0.415115 | 4.2:+24027811 | MS.gene39586:CDS |
| TACCTTGGTAGTGGCATCAT+TGG | 0.416461 | 4.2:-24026438 | None:intergenic |
| TCTGTTTCACGGTGCTTCAT+CGG | 0.436576 | 4.2:+24026175 | MS.gene39586:CDS |
| TGCGAGAATCTCGGTTTCAC+CGG | 0.449146 | 4.2:+24026218 | MS.gene39586:CDS |
| TTATCCAGCATAATTAACTT+TGG | 0.453562 | 4.2:-24027815 | None:intergenic |
| TCCAGCATAATTAACTTTGG+TGG | 0.454464 | 4.2:-24027812 | None:intergenic |
| GGTGGTTGTGGTGGTGGTGT+TGG | 0.461002 | 4.2:+24026151 | MS.gene39586:CDS |
| GGATAATGCGGGCCAACATA+AGG | 0.461211 | 4.2:+24027832 | MS.gene39586:CDS |
| ATCAGAGCACAAAGCGAGTC+CGG | 0.462984 | 4.2:-24026237 | None:intergenic |
| CGTTGCGGTGGTTGTGGTGG+TGG | 0.482660 | 4.2:+24026145 | MS.gene39586:CDS |
| GTGGTGTTGGCTCTGTTTCA+CGG | 0.484427 | 4.2:+24026164 | MS.gene39586:CDS |
| ACCTTTGTCTTTGACATACT+CGG | 0.488519 | 4.2:-24026273 | None:intergenic |
| GAAAGTCGTTGCGGTGGTTG+TGG | 0.489350 | 4.2:+24026139 | MS.gene39586:CDS |
| ACATATTGAACTTTAACTGA+TGG | 0.491289 | 4.2:-24027779 | None:intergenic |
| GTTAATTATGCTGGATAATG+CGG | 0.493031 | 4.2:+24027820 | MS.gene39586:CDS |
| TAATTGTAGATTACATACTC+TGG | 0.513437 | 4.2:+24027674 | MS.gene39586:intron |
| CAGAGAGAAGGTGAAACCTT+CGG | 0.521725 | 4.2:+24028516 | MS.gene39586:CDS |
| TCAAGAGAATGCGAGAATCT+CGG | 0.542359 | 4.2:+24026209 | MS.gene39586:CDS |
| GCCAACATAAGGAAACAATC+AGG | 0.546718 | 4.2:+24027843 | MS.gene39586:CDS |
| AATGGATCATACCTTGGTAG+TGG | 0.566233 | 4.2:-24026447 | None:intergenic |
| TTAATTATGCTGGATAATGC+GGG | 0.581451 | 4.2:+24027821 | MS.gene39586:CDS |
| TCCGAGTATGTCAAAGACAA+AGG | 0.585919 | 4.2:+24026272 | MS.gene39586:CDS |
| ACTTCTCAAACAGCTGCCGA+AGG | 0.598065 | 4.2:-24028532 | None:intergenic |
| AGTCGTTGCGGTGGTTGTGG+TGG | 0.613012 | 4.2:+24026142 | MS.gene39586:CDS |
| AGATTGTTTGAAATGTTGCA+CGG | 0.615839 | 4.2:+24026409 | MS.gene39586:CDS |
| CATTATTGGAAGTTTGCATG+AGG | 0.621897 | 4.2:+24027699 | MS.gene39586:CDS |
| ACTGCAGTATCTCAGAGAGA+AGG | 0.645807 | 4.2:+24028504 | MS.gene39586:CDS |
| CTCCAATGATGCCACTACCA+AGG | 0.663891 | 4.2:+24026436 | MS.gene39586:CDS |
| AATGAAGAAAGTCGTTGCGG+TGG | 0.675037 | 4.2:+24026133 | None:intergenic |
| AGAAATGAAGAAAGTCGTTG+CGG | 0.691962 | 4.2:+24026130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTAAGCTAAAAATT+TGG | + | chr4.2:24026370-24026389 | MS.gene39586:intron | 15.0% |
| !! | CAATTAGAGTAAAAAATTAA+TGG | - | chr4.2:24026635-24026654 | None:intergenic | 15.0% |
| !! | ATTTCTATAATTATCACCAT+TGG | - | chr4.2:24026757-24026776 | None:intergenic | 20.0% |
| !! | CCATAAAAAAAAACTCTAAA+TGG | - | chr4.2:24028221-24028240 | None:intergenic | 20.0% |
| !! | TAATTACAATAATGTTGCAT+GGG | + | chr4.2:24027163-24027182 | MS.gene39586:intron | 20.0% |
| !! | TCCAAAAACTAAAATTGATT+AGG | - | chr4.2:24026334-24026353 | None:intergenic | 20.0% |
| !! | TTAATTACAATAATGTTGCA+TGG | + | chr4.2:24027162-24027181 | MS.gene39586:intron | 20.0% |
| !!! | ATCAATTTTAGTTTTTGGAT+TGG | + | chr4.2:24026335-24026354 | MS.gene39586:intron | 20.0% |
| !!! | CCATTTAGAGTTTTTTTTTA+TGG | + | chr4.2:24028218-24028237 | MS.gene39586:intron | 20.0% |
| !!! | TCCTAATCAATTTTAGTTTT+TGG | + | chr4.2:24026330-24026349 | MS.gene39586:intron | 20.0% |
| ! | AAAATATAAGCACCTTCAAT+GGG | + | chr4.2:24026553-24026572 | MS.gene39586:intron | 25.0% |
| ! | AAATCTTGTAAAACAGCTAT+TGG | + | chr4.2:24028174-24028193 | MS.gene39586:intron | 25.0% |
| ! | AATTACAATAATGTTGCATG+GGG | + | chr4.2:24027164-24027183 | MS.gene39586:intron | 25.0% |
| ! | ACATATTGAACTTTAACTGA+TGG | - | chr4.2:24027782-24027801 | None:intergenic | 25.0% |
| ! | ACTTACCAAACATATTGTTA+AGG | + | chr4.2:24026685-24026704 | MS.gene39586:intron | 25.0% |
| ! | ATTACCAACAATAATAGCAT+TGG | + | chr4.2:24027235-24027254 | MS.gene39586:intron | 25.0% |
| ! | TAAAAATTTGGTTGCAGAAT+TGG | + | chr4.2:24026382-24026401 | MS.gene39586:intron | 25.0% |
| ! | TAAAATATAAGCACCTTCAA+TGG | + | chr4.2:24026552-24026571 | MS.gene39586:intron | 25.0% |
| ! | TAATTGTAGATTACATACTC+TGG | + | chr4.2:24027674-24027693 | MS.gene39586:intron | 25.0% |
| ! | TACATCATCACTTAAACTTA+AGG | - | chr4.2:24026534-24026553 | None:intergenic | 25.0% |
| ! | TGCTTCAAAACTTTGATATT+GGG | - | chr4.2:24027527-24027546 | None:intergenic | 25.0% |
| ! | TTATCCAGCATAATTAACTT+TGG | - | chr4.2:24027818-24027837 | None:intergenic | 25.0% |
| ! | TTGCTTCAAAACTTTGATAT+TGG | - | chr4.2:24027528-24027547 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr4.2:24026933-24026952 | MS.gene39586:intron | 25.0% |
| !! | CATGATTTTCAATCTATTTC+TGG | + | chr4.2:24027288-24027307 | MS.gene39586:intron | 25.0% |
| !! | TTCAAGTTCATACTTATTTC+TGG | - | chr4.2:24028263-24028282 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTTTATGGTTGCA+TGG | + | chr4.2:24028226-24028245 | MS.gene39586:intron | 25.0% |
| !!! | TGGTTTTCAAGAATTTTCAA+AGG | + | chr4.2:24027308-24027327 | MS.gene39586:intron | 25.0% |
| !!! | TTGGTTTTAAATTGATCTCA+AGG | + | chr4.2:24027910-24027929 | MS.gene39586:intron | 25.0% |
| !!! | TTTTGGATTGGATTTTTGTT+AGG | + | chr4.2:24026347-24026366 | MS.gene39586:intron | 25.0% |
| AAATATAAGCACCTTCAATG+GGG | + | chr4.2:24026554-24026573 | MS.gene39586:intron | 30.0% | |
| AATCAATAACACTGTGCTTA+TGG | + | chr4.2:24028103-24028122 | MS.gene39586:intron | 30.0% | |
| ATAACTATCGTCCAAAAACT+GGG | - | chr4.2:24027640-24027659 | None:intergenic | 30.0% | |
| ATCAAACATTGAGGTAAAGT+TGG | - | chr4.2:24027497-24027516 | None:intergenic | 30.0% | |
| ATCACTTAAACTTAAGGCAA+CGG | - | chr4.2:24026528-24026547 | None:intergenic | 30.0% | |
| ATTACAATAATGTTGCATGG+GGG | + | chr4.2:24027165-24027184 | MS.gene39586:intron | 30.0% | |
| CCAATATGTAATGAAGGAAA+TGG | - | chr4.2:24027365-24027384 | None:intergenic | 30.0% | |
| CCATTTCCTTCATTACATAT+TGG | + | chr4.2:24027362-24027381 | MS.gene39586:intron | 30.0% | |
| CTATCTCCAATATGTAATGA+AGG | - | chr4.2:24027371-24027390 | None:intergenic | 30.0% | |
| CTTCAAAGTAATGTATACAG+TGG | - | chr4.2:24026608-24026627 | None:intergenic | 30.0% | |
| CTTCATTACATATTGGAGAT+AGG | + | chr4.2:24027369-24027388 | MS.gene39586:intron | 30.0% | |
| CTTGTGGTTTATAGTTAGTT+TGG | + | chr4.2:24027891-24027910 | MS.gene39586:intron | 30.0% | |
| GAAATTAGAGTTAGCGAAAA+TGG | - | chr4.2:24026468-24026487 | None:intergenic | 30.0% | |
| GAATGCTTTACCAACTAATT+GGG | - | chr4.2:24028073-24028092 | None:intergenic | 30.0% | |
| GTTAATTATGCTGGATAATG+CGG | + | chr4.2:24027820-24027839 | MS.gene39586:CDS | 30.0% | |
| TAACTATAAACCACAAGAAC+AGG | - | chr4.2:24027888-24027907 | None:intergenic | 30.0% | |
| TAGGAAATCATGCGAAAATA+AGG | + | chr4.2:24027388-24027407 | MS.gene39586:intron | 30.0% | |
| TATAACTATCGTCCAAAAAC+TGG | - | chr4.2:24027641-24027660 | None:intergenic | 30.0% | |
| TGAATGCTTTACCAACTAAT+TGG | - | chr4.2:24028074-24028093 | None:intergenic | 30.0% | |
| TTAATTATGCTGGATAATGC+GGG | + | chr4.2:24027821-24027840 | MS.gene39586:CDS | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr4.2:24026902-24026921 | None:intergenic | 30.0% | |
| TTCGTCCTTAACAATATGTT+TGG | - | chr4.2:24026693-24026712 | None:intergenic | 30.0% | |
| TTGTTAAGGACGAATTACTT+CGG | + | chr4.2:24026699-24026718 | MS.gene39586:intron | 30.0% | |
| ! | AACTCTAATTTCGATTCGAT+AGG | + | chr4.2:24026476-24026495 | MS.gene39586:intron | 30.0% |
| ! | ACTCTTGCAGAATTGATAAT+TGG | + | chr4.2:24028467-24028486 | MS.gene39586:intron | 30.0% |
| ! | AGATTGTTTGAAATGTTGCA+CGG | + | chr4.2:24026409-24026428 | MS.gene39586:CDS | 30.0% |
| ! | ATTTTCAAAGGAAGTGATGA+AGG | + | chr4.2:24027320-24027339 | MS.gene39586:intron | 30.0% |
| !!! | TTTTGAAGCAACGAAATATC+AGG | + | chr4.2:24027537-24027556 | MS.gene39586:intron | 30.0% |
| ACAGCCAATGCTATTATTGT+TGG | - | chr4.2:24027242-24027261 | None:intergenic | 35.0% | |
| ACCTGATTGTTTCCTTATGT+TGG | - | chr4.2:24027847-24027866 | None:intergenic | 35.0% | |
| ACCTTTGTCTTTGACATACT+CGG | - | chr4.2:24026276-24026295 | None:intergenic | 35.0% | |
| ATGGTAACAACATGATTGTG+TGG | - | chr4.2:24027346-24027365 | None:intergenic | 35.0% | |
| ATTCGTTAGTGACATGCATT+TGG | + | chr4.2:24026775-24026794 | MS.gene39586:intron | 35.0% | |
| CATTATTGGAAGTTTGCATG+AGG | + | chr4.2:24027699-24027718 | MS.gene39586:CDS | 35.0% | |
| GAACTTTAACTGATGGAAAC+TGG | - | chr4.2:24027775-24027794 | None:intergenic | 35.0% | |
| TAAACTTAAGGCAACGGTAA+TGG | - | chr4.2:24026522-24026541 | None:intergenic | 35.0% | |
| TAACACAATTCTGCTAATGC+TGG | + | chr4.2:24028008-24028027 | MS.gene39586:intron | 35.0% | |
| TAACTATCGTCCAAAAACTG+GGG | - | chr4.2:24027639-24027658 | None:intergenic | 35.0% | |
| TCAATAAAGCCAACAACTTC+AGG | - | chr4.2:24027740-24027759 | None:intergenic | 35.0% | |
| TCCACCAAAGTTAATTATGC+TGG | + | chr4.2:24027811-24027830 | MS.gene39586:CDS | 35.0% | |
| TCCACTTAAGCCATCTATAA+CGG | - | chr4.2:24026583-24026602 | None:intergenic | 35.0% | |
| TCCAGCATAATTAACTTTGG+TGG | - | chr4.2:24027815-24027834 | None:intergenic | 35.0% | |
| TTGCATTTGTCCCAATTAGT+TGG | + | chr4.2:24028060-24028079 | MS.gene39586:intron | 35.0% | |
| ! | ACATTGAGGTAAAGTTGGTT+AGG | - | chr4.2:24027492-24027511 | None:intergenic | 35.0% |
| ! | ATTGAGGTAAAGTTGGTTAG+GGG | - | chr4.2:24027490-24027509 | None:intergenic | 35.0% |
| ! | CATTGAGGTAAAGTTGGTTA+GGG | - | chr4.2:24027491-24027510 | None:intergenic | 35.0% |
| ! | CATTTGGAACTTATGAGTTC+TGG | + | chr4.2:24026791-24026810 | MS.gene39586:intron | 35.0% |
| ! | GTTTTCTATCCTGAAGTTGT+TGG | + | chr4.2:24027728-24027747 | MS.gene39586:CDS | 35.0% |
| !! | ATAAGGTTGGTTTAGTGGTT+GGG | + | chr4.2:24027191-24027210 | MS.gene39586:intron | 35.0% |
| !! | GGAATATAAGGTTGGTTTAG+TGG | + | chr4.2:24027186-24027205 | MS.gene39586:intron | 35.0% |
| !! | TACATACTCTGGAGCATTAT+TGG | + | chr4.2:24027685-24027704 | MS.gene39586:CDS | 35.0% |
| !! | TATAAGGTTGGTTTAGTGGT+TGG | + | chr4.2:24027190-24027209 | MS.gene39586:intron | 35.0% |
| AAACTCAAAAACAGGGCCTA+AGG | + | chr4.2:24027083-24027102 | MS.gene39586:intron | 40.0% | |
| AATAAACGAAACACCGCCTT+AGG | - | chr4.2:24027102-24027121 | None:intergenic | 40.0% | |
| AATGGATCATACCTTGGTAG+TGG | - | chr4.2:24026450-24026469 | None:intergenic | 40.0% | |
| ACCGTTATAGATGGCTTAAG+TGG | + | chr4.2:24026579-24026598 | MS.gene39586:intron | 40.0% | |
| AGCGAAAATGGATCATACCT+TGG | - | chr4.2:24026456-24026475 | None:intergenic | 40.0% | |
| AGGAAATGTTGCTGATGCTT+AGG | + | chr4.2:24026496-24026515 | MS.gene39586:intron | 40.0% | |
| AGGGAAGGGAAATGTAAGAA+AGG | + | chr4.2:24027023-24027042 | MS.gene39586:intron | 40.0% | |
| ATGTTGCATGGGGGAATATA+AGG | + | chr4.2:24027174-24027193 | MS.gene39586:intron | 40.0% | |
| CAGAACCCATCTTATGAGTT+CGG | - | chr4.2:24026663-24026682 | None:intergenic | 40.0% | |
| CCTCTCCAAACTCAAAAACA+GGG | + | chr4.2:24027076-24027095 | MS.gene39586:intron | 40.0% | |
| CGTATCAGTACTTCATAGGA+GGG | + | chr4.2:24026986-24027005 | MS.gene39586:intron | 40.0% | |
| CTGGGGATAGAGGTAATATA+TGG | - | chr4.2:24027622-24027641 | None:intergenic | 40.0% | |
| CTTGAATATCCACAGCAACT+CGG | + | chr4.2:24028277-24028296 | MS.gene39586:intron | 40.0% | |
| GCCAACATAAGGAAACAATC+AGG | + | chr4.2:24027843-24027862 | MS.gene39586:CDS | 40.0% | |
| GGCAAGCTAATCAAACATTG+AGG | - | chr4.2:24027506-24027525 | None:intergenic | 40.0% | |
| GGGATAGAGGTAATATATGG+TGG | - | chr4.2:24027619-24027638 | None:intergenic | 40.0% | |
| GTATCAGTACTTCATAGGAG+GGG | + | chr4.2:24026987-24027006 | MS.gene39586:intron | 40.0% | |
| TATCAGTACTTCATAGGAGG+GGG | + | chr4.2:24026988-24027007 | MS.gene39586:intron | 40.0% | |
| TCAAGAGAATGCGAGAATCT+CGG | + | chr4.2:24026209-24026228 | MS.gene39586:CDS | 40.0% | |
| TCCGAGTATGTCAAAGACAA+AGG | + | chr4.2:24026272-24026291 | MS.gene39586:CDS | 40.0% | |
| TCCTCTCCAAACTCAAAAAC+AGG | + | chr4.2:24027075-24027094 | MS.gene39586:intron | 40.0% | |
| TGCAACCGAACTCATAAGAT+GGG | + | chr4.2:24026655-24026674 | MS.gene39586:intron | 40.0% | |
| TGTCCGTATCAGTACTTCAT+AGG | + | chr4.2:24026982-24027001 | MS.gene39586:intron | 40.0% | |
| ! | AATGATTTTCCGAGTTGCTG+TGG | - | chr4.2:24028289-24028308 | None:intergenic | 40.0% |
| ! | ATTGATCTCAAGGCGTCTAT+TGG | + | chr4.2:24027920-24027939 | MS.gene39586:intron | 40.0% |
| ! | CACGTTGCAATCTTTTCCAA+TGG | + | chr4.2:24026738-24026757 | MS.gene39586:intron | 40.0% |
| ! | TTACCTCTATCCCCAGTTTT+TGG | + | chr4.2:24027626-24027645 | MS.gene39586:intron | 40.0% |
| !! | CCTCCTATGAAGTACTGATA+CGG | - | chr4.2:24026988-24027007 | None:intergenic | 40.0% |
| !! | TAAGGTTGGTTTAGTGGTTG+GGG | + | chr4.2:24027192-24027211 | MS.gene39586:intron | 40.0% |
| !!! | GTTTTTGAGTTTGGAGAGGA+GGG | - | chr4.2:24027075-24027094 | None:intergenic | 40.0% |
| !!! | TGTTTTTGAGTTTGGAGAGG+AGG | - | chr4.2:24027076-24027095 | None:intergenic | 40.0% |
| !!! | TTAGGCCCTGTTTTTGAGTT+TGG | - | chr4.2:24027084-24027103 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTTGGAGAGGAG+GGG | - | chr4.2:24027074-24027093 | None:intergenic | 40.0% |
| AATGGGGCAACCGTTATAGA+TGG | + | chr4.2:24026570-24026589 | MS.gene39586:intron | 45.0% | |
| ACAAGAACAGGATGCAAGCA+GGG | - | chr4.2:24027876-24027895 | None:intergenic | 45.0% | |
| ACTGCAGTATCTCAGAGAGA+AGG | + | chr4.2:24028504-24028523 | MS.gene39586:CDS | 45.0% | |
| AGGCGTCTATTGGAATGCTA+TGG | + | chr4.2:24027930-24027949 | MS.gene39586:intron | 45.0% | |
| ATAGGAGGGGGGTAAAATGA+TGG | + | chr4.2:24027000-24027019 | MS.gene39586:intron | 45.0% | |
| ATCAGTACTTCATAGGAGGG+GGG | + | chr4.2:24026989-24027008 | MS.gene39586:intron | 45.0% | |
| CAGAGAGAAGGTGAAACCTT+CGG | + | chr4.2:24028516-24028535 | MS.gene39586:CDS | 45.0% | |
| CCGTATCAGTACTTCATAGG+AGG | + | chr4.2:24026985-24027004 | MS.gene39586:intron | 45.0% | |
| GGAAAAGATTGCAACGTGCA+AGG | - | chr4.2:24026736-24026755 | None:intergenic | 45.0% | |
| GTGCAACCGAACTCATAAGA+TGG | + | chr4.2:24026654-24026673 | MS.gene39586:intron | 45.0% | |
| TATAACGGTTGCCCCATTGA+AGG | - | chr4.2:24026568-24026587 | None:intergenic | 45.0% | |
| TCTGTTTCACGGTGCTTCAT+CGG | + | chr4.2:24026175-24026194 | MS.gene39586:CDS | 45.0% | |
| TGCATGGGGGAATATAAGGT+TGG | + | chr4.2:24027178-24027197 | MS.gene39586:intron | 45.0% | |
| ! | GGGTAAAATGATGGAGGGAA+GGG | + | chr4.2:24027009-24027028 | MS.gene39586:intron | 45.0% |
| !! | TACCTTGGTAGTGGCATCAT+TGG | - | chr4.2:24026441-24026460 | None:intergenic | 45.0% |
| !! | TGAAGTACTGATACGGACAC+CGG | - | chr4.2:24026981-24027000 | None:intergenic | 45.0% |
| !!! | CCCTGTTTTTGAGTTTGGAG+AGG | - | chr4.2:24027079-24027098 | None:intergenic | 45.0% |
| ACTCTGTTCGCGAGTTTGGA+GGG | + | chr4.2:24026823-24026842 | MS.gene39586:intron | 50.0% | |
| AGGAGGGGAATGAAGAGCTT+CGG | - | chr4.2:24027059-24027078 | None:intergenic | 50.0% | |
| ATCAGAGCACAAAGCGAGTC+CGG | - | chr4.2:24026240-24026259 | None:intergenic | 50.0% | |
| CAAACTCGCGAACAGAGTCT+TGG | - | chr4.2:24026821-24026840 | None:intergenic | 50.0% | |
| CAAGACTCTGTTCGCGAGTT+TGG | + | chr4.2:24026819-24026838 | MS.gene39586:intron | 50.0% | |
| CACAAGAACAGGATGCAAGC+AGG | - | chr4.2:24027877-24027896 | None:intergenic | 50.0% | |
| CGTCCAAAAACTGGGGATAG+AGG | - | chr4.2:24027632-24027651 | None:intergenic | 50.0% | |
| CTCAAAAACAGGGCCTAAGG+CGG | + | chr4.2:24027086-24027105 | MS.gene39586:intron | 50.0% | |
| CTCCAATGATGCCACTACCA+AGG | + | chr4.2:24026436-24026455 | MS.gene39586:CDS | 50.0% | |
| CTGCTTGCATCCTGTTCTTG+TGG | + | chr4.2:24027875-24027894 | MS.gene39586:intron | 50.0% | |
| GGATAATGCGGGCCAACATA+AGG | + | chr4.2:24027832-24027851 | MS.gene39586:CDS | 50.0% | |
| GTCATGACACGCCTAATCCA+AGG | - | chr4.2:24026878-24026897 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | + | chr4.2:24026858-24026877 | MS.gene39586:intron | 50.0% | |
| TGCGAGAATCTCGGTTTCAC+CGG | + | chr4.2:24026218-24026237 | MS.gene39586:CDS | 50.0% | |
| ! | GAGGGGGGTAAAATGATGGA+GGG | + | chr4.2:24027004-24027023 | MS.gene39586:intron | 50.0% |
| ! | GGGGTAAAATGATGGAGGGA+AGG | + | chr4.2:24027008-24027027 | MS.gene39586:intron | 50.0% |
| !! | GTGGTGTTGGCTCTGTTTCA+CGG | + | chr4.2:24026164-24026183 | MS.gene39586:CDS | 50.0% |
| ACCGGACACAACACAGACAC+TGG | - | chr4.2:24026963-24026982 | None:intergenic | 55.0% | |
| AGGGGAATGAAGAGCTTCGG+GGG | - | chr4.2:24027056-24027075 | None:intergenic | 55.0% | |
| GAAAGTCGTTGCGGTGGTTG+TGG | + | chr4.2:24026139-24026158 | MS.gene39586:CDS | 55.0% | |
| GACTCTGTTCGCGAGTTTGG+AGG | + | chr4.2:24026822-24026841 | MS.gene39586:intron | 55.0% | |
| GAGGGGAATGAAGAGCTTCG+GGG | - | chr4.2:24027057-24027076 | None:intergenic | 55.0% | |
| GCACGGACACTCCTTGGATT+AGG | + | chr4.2:24026864-24026883 | MS.gene39586:intron | 55.0% | |
| GCCAGTGTCTGTGTTGTGTC+CGG | + | chr4.2:24026959-24026978 | MS.gene39586:intron | 55.0% | |
| GGAGGGGAATGAAGAGCTTC+GGG | - | chr4.2:24027058-24027077 | None:intergenic | 55.0% | |
| GGAGGGGGGTAAAATGATGG+AGG | + | chr4.2:24027003-24027022 | MS.gene39586:intron | 55.0% | |
| GTTCGCGAGTTTGGAGGGAA+GGG | + | chr4.2:24026828-24026847 | MS.gene39586:intron | 55.0% | |
| TGTTCGCGAGTTTGGAGGGA+AGG | + | chr4.2:24026827-24026846 | MS.gene39586:intron | 55.0% | |
| TTGGTTTAGTGGTTGGGGCG+GGG | + | chr4.2:24027197-24027216 | MS.gene39586:intron | 55.0% | |
| ! | GTTGGTTTAGTGGTTGGGGC+GGG | + | chr4.2:24027196-24027215 | MS.gene39586:intron | 55.0% |
| !! | GGTTGGTTTAGTGGTTGGGG+CGG | + | chr4.2:24027195-24027214 | MS.gene39586:intron | 55.0% |
| AGGGAGGGGGCTATGAAGCA+CGG | + | chr4.2:24026847-24026866 | MS.gene39586:intron | 60.0% | |
| AGTCGTTGCGGTGGTTGTGG+TGG | + | chr4.2:24026142-24026161 | MS.gene39586:CDS | 60.0% | |
| CGAGTTTGGAGGGAAGGGAG+GGG | + | chr4.2:24026833-24026852 | MS.gene39586:intron | 60.0% | |
| GAGTTTGGAGGGAAGGGAGG+GGG | + | chr4.2:24026834-24026853 | MS.gene39586:intron | 60.0% | |
| GCGAGTTTGGAGGGAAGGGA+GGG | + | chr4.2:24026832-24026851 | MS.gene39586:intron | 60.0% | |
| TGGTTTAGTGGTTGGGGCGG+GGG | + | chr4.2:24027198-24027217 | MS.gene39586:intron | 60.0% | |
| !! | GGTGGTTGTGGTGGTGGTGT+TGG | + | chr4.2:24026151-24026170 | MS.gene39586:CDS | 60.0% |
| CGCGAGTTTGGAGGGAAGGG+AGG | + | chr4.2:24026831-24026850 | MS.gene39586:intron | 65.0% | |
| CGTTGCGGTGGTTGTGGTGG+TGG | + | chr4.2:24026145-24026164 | MS.gene39586:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 24026134 | 24028549 | 24026134 | ID=MS.gene39586 |
| chr4.2 | mRNA | 24026134 | 24028549 | 24026134 | ID=MS.gene39586.t1;Parent=MS.gene39586 |
| chr4.2 | exon | 24026134 | 24026293 | 24026134 | ID=MS.gene39586.t1.exon1;Parent=MS.gene39586.t1 |
| chr4.2 | CDS | 24026134 | 24026293 | 24026134 | ID=cds.MS.gene39586.t1;Parent=MS.gene39586.t1 |
| chr4.2 | exon | 24026399 | 24026457 | 24026399 | ID=MS.gene39586.t1.exon2;Parent=MS.gene39586.t1 |
| chr4.2 | CDS | 24026399 | 24026457 | 24026399 | ID=cds.MS.gene39586.t1;Parent=MS.gene39586.t1 |
| chr4.2 | exon | 24027683 | 24027864 | 24027683 | ID=MS.gene39586.t1.exon3;Parent=MS.gene39586.t1 |
| chr4.2 | CDS | 24027683 | 24027864 | 24027683 | ID=cds.MS.gene39586.t1;Parent=MS.gene39586.t1 |
| chr4.2 | exon | 24028477 | 24028549 | 24028477 | ID=MS.gene39586.t1.exon4;Parent=MS.gene39586.t1 |
| chr4.2 | CDS | 24028477 | 24028549 | 24028477 | ID=cds.MS.gene39586.t1;Parent=MS.gene39586.t1 |
| Gene Sequence |
| Protein sequence |
