Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051088.t1 | XP_003627334.2 | 100 | 95 | 0 | 0 | 1 | 95 | 34 | 128 | 3.20E-45 | 190.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051088.t1 | Q8LFL8 | 87.4 | 95 | 12 | 0 | 1 | 95 | 34 | 128 | 3.1e-41 | 168.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051088.t1 | G7L7M4 | 100.0 | 95 | 0 | 0 | 1 | 95 | 34 | 128 | 2.3e-45 | 190.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene051088 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene051088 | MS.gene058906 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene051088 | MS.gene060572 | 0.806374 | 8.49E-50 | -1.69E-46 |
| MS.gene051088 | MS.gene063917 | 0.824804 | 6.62E-54 | -1.69E-46 |
| MS.gene051088 | MS.gene06989 | 0.803684 | 3.10E-49 | -1.69E-46 |
| MS.gene051088 | MS.gene07115 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene051088 | MS.gene073954 | 0.804906 | 1.72E-49 | -1.69E-46 |
| MS.gene051088 | MS.gene074445 | 0.80855 | 2.93E-50 | -1.69E-46 |
| MS.gene051088 | MS.gene22968 | 0.808745 | 2.66E-50 | -1.69E-46 |
| MS.gene051088 | MS.gene22983 | 0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene051088 | MS.gene27991 | 0.809492 | 1.84E-50 | -1.69E-46 |
| MS.gene051088 | MS.gene43992 | 0.822373 | 2.45E-53 | -1.69E-46 |
| MS.gene051088 | MS.gene45578 | 0.828237 | 1.00E-54 | -1.69E-46 |
| MS.gene051088 | MS.gene53579 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene051088 | MS.gene55988 | 0.80871 | 2.71E-50 | -1.69E-46 |
| MS.gene051088 | MS.gene59769 | 0.826248 | 3.01E-54 | -1.69E-46 |
| MS.gene051088 | MS.gene64243 | 0.812327 | 4.48E-51 | -1.69E-46 |
| MS.gene051088 | MS.gene68873 | 0.811195 | 7.91E-51 | -1.69E-46 |
| MS.gene051088 | MS.gene69262 | 0.823461 | 1.37E-53 | -1.69E-46 |
| MS.gene051088 | MS.gene69947 | 0.8251 | 5.64E-54 | -1.69E-46 |
| MS.gene051088 | MS.gene75477 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene051088 | MS.gene78659 | 0.810798 | 9.63E-51 | -1.69E-46 |
| MS.gene051088 | MS.gene88371 | 0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene051088 | MS.gene89151 | 0.891577 | 3.50E-74 | -1.69E-46 |
| MS.gene051088 | MS.gene89168 | 0.938193 | 1.01E-98 | -1.69E-46 |
| MS.gene051088 | MS.gene99313 | 0.801565 | 8.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051088.t1 | MTR_8g021250 | 100.000 | 95 | 0 | 0 | 1 | 95 | 34 | 128 | 3.60e-66 | 195 |
| MS.gene051088.t1 | MTR_2g042700 | 82.105 | 95 | 17 | 0 | 1 | 95 | 34 | 128 | 1.19e-54 | 166 |
| MS.gene051088.t1 | MTR_8g021250 | 97.222 | 72 | 2 | 0 | 1 | 72 | 34 | 105 | 5.49e-47 | 146 |
| MS.gene051088.t1 | MTR_2g042700 | 76.712 | 73 | 17 | 0 | 1 | 73 | 34 | 106 | 4.77e-38 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051088.t1 | AT3G14080 | 87.368 | 95 | 12 | 0 | 1 | 95 | 34 | 128 | 2.20e-57 | 172 |
| MS.gene051088.t1 | AT3G14080 | 87.368 | 95 | 12 | 0 | 1 | 95 | 34 | 128 | 2.20e-57 | 172 |
| MS.gene051088.t1 | AT3G14080 | 87.368 | 95 | 12 | 0 | 1 | 95 | 24 | 118 | 2.63e-57 | 172 |
| MS.gene051088.t1 | AT1G19120 | 81.053 | 95 | 18 | 0 | 1 | 95 | 34 | 128 | 4.55e-52 | 159 |
| MS.gene051088.t1 | AT3G14080 | 93.750 | 48 | 3 | 0 | 1 | 48 | 34 | 81 | 2.50e-27 | 96.3 |
Find 29 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGATGCTTCAGAACTAAA+AGG | 0.302591 | 8.3:-69927938 | MS.gene051088:CDS |
| GGGGAAAATGTTGTTCTAAT+TGG | 0.311566 | 8.3:-69929662 | MS.gene051088:CDS |
| AAGAATGGAGTTCCTTGACT+TGG | 0.481713 | 8.3:-69927903 | MS.gene051088:CDS |
| GCAGCTAACGCTGTTCTTGA+GGG | 0.491345 | 8.3:-69929752 | MS.gene051088:intron |
| GTGTTCCTACAGAAGAAATC+AGG | 0.501365 | 8.3:-69929511 | MS.gene051088:CDS |
| TTCTTGAGGGTGCCTGTGAG+AGG | 0.503890 | 8.3:-69929739 | MS.gene051088:CDS |
| GTAGGAACACGCGTCATATG+TGG | 0.510896 | 8.3:+69929524 | None:intergenic |
| TGCAGCTAACGCTGTTCTTG+AGG | 0.511473 | 8.3:-69929753 | MS.gene051088:intron |
| GATATTTCAGGCACAGAAAG+TGG | 0.522168 | 8.3:-69927963 | MS.gene051088:intron |
| CTATATTGTGACATCCCTCT+AGG | 0.524354 | 8.3:-69929701 | MS.gene051088:CDS |
| GGGATGCTTCAGAACTAAAA+GGG | 0.534576 | 8.3:-69927937 | MS.gene051088:CDS |
| TAGGAACACGCGTCATATGT+GGG | 0.543008 | 8.3:+69929525 | None:intergenic |
| TCAGGCACAGAAAGTGGAAA+GGG | 0.543526 | 8.3:-69927957 | MS.gene051088:intron |
| GCCTGTGAGAGGGTAATTGT+TGG | 0.562739 | 8.3:-69929728 | MS.gene051088:CDS |
| CTAGGTCTTTATGTAATCCG+TGG | 0.570170 | 8.3:-69929683 | MS.gene051088:CDS |
| TGTTGTTCTAATTGGTGAGA+TGG | 0.571580 | 8.3:-69929654 | MS.gene051088:intron |
| TAGGTCTTTATGTAATCCGT+GGG | 0.590765 | 8.3:-69929682 | MS.gene051088:CDS |
| TTCAGGCACAGAAAGTGGAA+AGG | 0.592068 | 8.3:-69927958 | MS.gene051088:intron |
| TCTTGAGGGTGCCTGTGAGA+GGG | 0.598880 | 8.3:-69929738 | MS.gene051088:CDS |
| ACCCTCCTGATTTCTTCTGT+AGG | 0.607048 | 8.3:+69929506 | None:intergenic |
| ACCAACAATTACCCTCTCAC+AGG | 0.608128 | 8.3:+69929727 | None:intergenic |
| AGGAACACGCGTCATATGTG+GGG | 0.634207 | 8.3:+69929526 | None:intergenic |
| TTCCTACAGAAGAAATCAGG+AGG | 0.637433 | 8.3:-69929508 | MS.gene051088:CDS |
| TTAATCACTAGTCCAAGTCA+AGG | 0.651795 | 8.3:+69927891 | None:intergenic |
| GGATTACATAAAGACCTAGA+GGG | 0.677541 | 8.3:+69929687 | None:intergenic |
| GGAACACGCGTCATATGTGG+GGG | 0.684221 | 8.3:+69929527 | None:intergenic |
| CGGATTACATAAAGACCTAG+AGG | 0.700189 | 8.3:+69929686 | None:intergenic |
| TCCTACAGAAGAAATCAGGA+GGG | 0.714873 | 8.3:-69929507 | MS.gene051088:intron |
| AGGTCTTTATGTAATCCGTG+GGG | 0.758020 | 8.3:-69929681 | MS.gene051088:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAGTGGATAAATTAA+TGG | - | chr8.3:69928871-69928890 | MS.gene051088:intron | 15.0% |
| !! | TATTAATATACGACAATAAT+AGG | + | chr8.3:69928390-69928409 | None:intergenic | 15.0% |
| !!! | ATCATAAAGAAGTTTAATTT+AGG | + | chr8.3:69928282-69928301 | None:intergenic | 15.0% |
| !!! | TAAGATTTTATTTTTTAAGC+AGG | + | chr8.3:69929532-69929551 | None:intergenic | 15.0% |
| !!! | TTGATATTTTTGTTATGATT+TGG | - | chr8.3:69929674-69929693 | MS.gene051088:CDS | 15.0% |
| !! | ATCATAACAAAAATATCAAC+TGG | + | chr8.3:69929673-69929692 | None:intergenic | 20.0% |
| !! | GTTAAATATTCTATATTGAG+TGG | - | chr8.3:69929763-69929782 | MS.gene051088:intron | 20.0% |
| !! | TTGAATTAATCCTAAATTTC+AGG | - | chr8.3:69929503-69929522 | MS.gene051088:intron | 20.0% |
| !!! | AAAAGTACAATAATTGTGTT+TGG | + | chr8.3:69928615-69928634 | None:intergenic | 20.0% |
| !!! | AGAAATAGTTTTAAATGCAA+AGG | + | chr8.3:69928146-69928165 | None:intergenic | 20.0% |
| !!! | GAAATAGTTTTAAATGCAAA+GGG | + | chr8.3:69928145-69928164 | None:intergenic | 20.0% |
| !!! | TGAAATTTAGGATTAATTCA+AGG | + | chr8.3:69929504-69929523 | None:intergenic | 20.0% |
| !!! | TTCAAGGATATATCAAATTT+TGG | + | chr8.3:69929488-69929507 | None:intergenic | 20.0% |
| ! | GTGATATCTACTAATTGTTA+TGG | - | chr8.3:69928639-69928658 | MS.gene051088:intron | 25.0% |
| ! | TAACTAATTAGCTACAACTA+AGG | + | chr8.3:69929169-69929188 | None:intergenic | 25.0% |
| ! | TAGTCAGTTAGAAATTAGAT+TGG | - | chr8.3:69928504-69928523 | MS.gene051088:intron | 25.0% |
| ! | TTATGTATTACCACTGTAAA+TGG | + | chr8.3:69929418-69929437 | None:intergenic | 25.0% |
| ! | TTGGTCAATTTATACATTGA+AGG | - | chr8.3:69929355-69929374 | MS.gene051088:intron | 25.0% |
| !! | TGCATACTTCATAATCATTT+TGG | - | chr8.3:69928894-69928913 | MS.gene051088:intron | 25.0% |
| ACATCCTGAAAATTGAAAGA+CGG | + | chr8.3:69928192-69928211 | None:intergenic | 30.0% | |
| ACGATTATTACGATGATGAT+GGG | - | chr8.3:69928698-69928717 | MS.gene051088:intron | 30.0% | |
| ACTTGAGAATATAGCTTAGT+TGG | - | chr8.3:69929093-69929112 | MS.gene051088:intron | 30.0% | |
| ATTGTTATGGTAAGTTACCT+TGG | - | chr8.3:69928652-69928671 | MS.gene051088:intron | 30.0% | |
| CATTGTTTGTAAAGAGAAGT+AGG | + | chr8.3:69928418-69928437 | None:intergenic | 30.0% | |
| CTACTTCTCTTTACAAACAA+TGG | - | chr8.3:69928416-69928435 | MS.gene051088:intron | 30.0% | |
| CTTACCAATCATATGTACAA+TGG | + | chr8.3:69929579-69929598 | None:intergenic | 30.0% | |
| GATATGTTAAAGAGGTCATT+TGG | + | chr8.3:69929446-69929465 | None:intergenic | 30.0% | |
| GCAATGTAGATATGTTAAAG+AGG | + | chr8.3:69929454-69929473 | None:intergenic | 30.0% | |
| TAAGCTAGTACGACTTATTA+GGG | - | chr8.3:69928973-69928992 | MS.gene051088:intron | 30.0% | |
| TACAATGGACAAGTAGTTTA+TGG | + | chr8.3:69929564-69929583 | None:intergenic | 30.0% | |
| TACGATTATTACGATGATGA+TGG | - | chr8.3:69928697-69928716 | MS.gene051088:intron | 30.0% | |
| TACTATATTGAAATGCTTCG+TGG | - | chr8.3:69929323-69929342 | MS.gene051088:intron | 30.0% | |
| TATAACTCAACCATTTACAG+TGG | - | chr8.3:69929405-69929424 | MS.gene051088:intron | 30.0% | |
| TTAAGCTAGTACGACTTATT+AGG | - | chr8.3:69928972-69928991 | MS.gene051088:intron | 30.0% | |
| TTGTCCATTGTACATATGAT+TGG | - | chr8.3:69929572-69929591 | MS.gene051088:intron | 30.0% | |
| ! | AGATGTTTTCTTTGTGTAGT+TGG | - | chr8.3:69929010-69929029 | MS.gene051088:intron | 30.0% |
| ! | GAAATTAGATTGGTCATGTT+TGG | - | chr8.3:69928514-69928533 | MS.gene051088:intron | 30.0% |
| ! | GATATAGTGTGGATTACTTT+AGG | + | chr8.3:69928779-69928798 | None:intergenic | 30.0% |
| AAGCAGGATTCCTGAAATTT+AGG | + | chr8.3:69929516-69929535 | None:intergenic | 35.0% | |
| AATTAGCTACAACTAAGGAC+AGG | + | chr8.3:69929164-69929183 | None:intergenic | 35.0% | |
| ACATTGTATTGCCTTAAGTG+AGG | + | chr8.3:69928339-69928358 | None:intergenic | 35.0% | |
| AGGGACTATGAGAAAAAGAA+TGG | - | chr8.3:69929837-69929856 | MS.gene051088:intron | 35.0% | |
| CAGAGTTAGAGTTACAGAAT+TGG | - | chr8.3:69928544-69928563 | MS.gene051088:intron | 35.0% | |
| CATTGTATTGCCTTAAGTGA+GGG | + | chr8.3:69928338-69928357 | None:intergenic | 35.0% | |
| CTACATGAAACAGATTCGTA+GGG | - | chr8.3:69928473-69928492 | MS.gene051088:intron | 35.0% | |
| CTAGCTTAATCGCTAGAATT+TGG | + | chr8.3:69928961-69928980 | None:intergenic | 35.0% | |
| GAGTGGAAATGTGATATTTC+AGG | - | chr8.3:69929780-69929799 | MS.gene051088:intron | 35.0% | |
| GGATTACATAAAGACCTAGA+GGG | + | chr8.3:69928071-69928090 | None:intergenic | 35.0% | |
| GGGGAAAATGTTGTTCTAAT+TGG | - | chr8.3:69928093-69928112 | MS.gene051088:intron | 35.0% | |
| GTAAAGATTTGACATGCGTT+AGG | - | chr8.3:69927949-69927968 | MS.gene051088:CDS | 35.0% | |
| GTTAGCTGCATGTTATTGAT+AGG | + | chr8.3:69927992-69928011 | None:intergenic | 35.0% | |
| TAGGAGGTTATCTCATAACT+CGG | - | chr8.3:69928573-69928592 | MS.gene051088:intron | 35.0% | |
| TAGGTCTTTATGTAATCCGT+GGG | - | chr8.3:69928073-69928092 | MS.gene051088:intron | 35.0% | |
| TCTACATGAAACAGATTCGT+AGG | - | chr8.3:69928472-69928491 | MS.gene051088:intron | 35.0% | |
| TGTAACTCTAACTCTGTAAC+TGG | + | chr8.3:69928540-69928559 | None:intergenic | 35.0% | |
| TGTATGACTGCATGTCAAAA+CGG | + | chr8.3:69929717-69929736 | None:intergenic | 35.0% | |
| TGTTGTTCTAATTGGTGAGA+TGG | - | chr8.3:69928101-69928120 | MS.gene051088:intron | 35.0% | |
| ! | ACAACCGTCTTTCAATTTTC+AGG | - | chr8.3:69928185-69928204 | MS.gene051088:intron | 35.0% |
| ! | ATATGATTGGTAAGCTCTAG+TGG | - | chr8.3:69929585-69929604 | MS.gene051088:intron | 35.0% |
| ! | CTTCGCTCTTTTGATCAATT+TGG | - | chr8.3:69927907-69927926 | MS.gene051088:CDS | 35.0% |
| ! | GTTACAGAATTGGCTTAGAT+AGG | - | chr8.3:69928554-69928573 | MS.gene051088:intron | 35.0% |
| ! | TGCTTCGTGGTTATGATTTT+TGG | - | chr8.3:69929336-69929355 | MS.gene051088:intron | 35.0% |
| ! | TTAGAACAACATTTTCCCCA+CGG | + | chr8.3:69928092-69928111 | None:intergenic | 35.0% |
| !! | GTCTTTCAATTTTCAGGATG+TGG | - | chr8.3:69928191-69928210 | MS.gene051088:intron | 35.0% |
| !! | TACCTTGGCTTGTGAAATAA+GGG | - | chr8.3:69928667-69928686 | MS.gene051088:intron | 35.0% |
| !! | TTACCTTGGCTTGTGAAATA+AGG | - | chr8.3:69928666-69928685 | MS.gene051088:intron | 35.0% |
| AAGAATGGAGTTCCTTGACT+TGG | - | chr8.3:69929852-69929871 | MS.gene051088:CDS | 40.0% | |
| AGGGATGCTTCAGAACTAAA+AGG | - | chr8.3:69929817-69929836 | MS.gene051088:intron | 40.0% | |
| AGGTAAAGTCGGATATAGTG+TGG | + | chr8.3:69928790-69928809 | None:intergenic | 40.0% | |
| AGGTCTTTATGTAATCCGTG+GGG | - | chr8.3:69928074-69928093 | MS.gene051088:intron | 40.0% | |
| AGTACGACTTATTAGGGATG+CGG | - | chr8.3:69928979-69928998 | MS.gene051088:intron | 40.0% | |
| ATAGGCACTTCTGCAATGAA+TGG | + | chr8.3:69928372-69928391 | None:intergenic | 40.0% | |
| CACTATATCCGACTTTACCT+TGG | - | chr8.3:69928790-69928809 | MS.gene051088:intron | 40.0% | |
| CGGATTACATAAAGACCTAG+AGG | + | chr8.3:69928072-69928091 | None:intergenic | 40.0% | |
| CTAGGTCTTTATGTAATCCG+TGG | - | chr8.3:69928072-69928091 | MS.gene051088:intron | 40.0% | |
| CTATATTGTGACATCCCTCT+AGG | - | chr8.3:69928054-69928073 | MS.gene051088:intron | 40.0% | |
| GATATTTCAGGCACAGAAAG+TGG | - | chr8.3:69929792-69929811 | MS.gene051088:intron | 40.0% | |
| GCAACGAGCTAGAAATAAAG+TGG | - | chr8.3:69928859-69928878 | MS.gene051088:intron | 40.0% | |
| GGGATGCTTCAGAACTAAAA+GGG | - | chr8.3:69929818-69929837 | MS.gene051088:intron | 40.0% | |
| GTGTTCCTACAGAAGAAATC+AGG | - | chr8.3:69928244-69928263 | MS.gene051088:intron | 40.0% | |
| TCCTACAGAAGAAATCAGGA+GGG | - | chr8.3:69928248-69928267 | MS.gene051088:intron | 40.0% | |
| TTCCTACAGAAGAAATCAGG+AGG | - | chr8.3:69928247-69928266 | MS.gene051088:intron | 40.0% | |
| TTTCACTCTCTGATTCACCA+GGG | - | chr8.3:69929261-69929280 | MS.gene051088:intron | 40.0% | |
| ! | ACAGAATTGGCTTAGATAGG+AGG | - | chr8.3:69928557-69928576 | MS.gene051088:intron | 40.0% |
| ! | TACCCTTATTTCACAAGCCA+AGG | + | chr8.3:69928672-69928691 | None:intergenic | 40.0% |
| !! | ATTACGATGATGATGGGTGT+TGG | - | chr8.3:69928704-69928723 | MS.gene051088:intron | 40.0% |
| !! | CAATTTTCAGGATGTGGAGA+GGG | - | chr8.3:69928197-69928216 | MS.gene051088:intron | 40.0% |
| !! | TCAATTTTCAGGATGTGGAG+AGG | - | chr8.3:69928196-69928215 | MS.gene051088:intron | 40.0% |
| AAACTCTTGCAGTGGATCCA+AGG | + | chr8.3:69928810-69928829 | None:intergenic | 45.0% | |
| ACCAACAATTACCCTCTCAC+AGG | + | chr8.3:69928031-69928050 | None:intergenic | 45.0% | |
| ACCCTCCTGATTTCTTCTGT+AGG | + | chr8.3:69928252-69928271 | None:intergenic | 45.0% | |
| ACTGCTAAAGCAAGTATCCC+TGG | + | chr8.3:69929281-69929300 | None:intergenic | 45.0% | |
| CAGTGGATCCAAGGTAAAGT+CGG | + | chr8.3:69928801-69928820 | None:intergenic | 45.0% | |
| CCAAGTTGCCTGTACTAGTA+TGG | - | chr8.3:69928837-69928856 | MS.gene051088:intron | 45.0% | |
| CCATACTAGTACAGGCAACT+TGG | + | chr8.3:69928840-69928859 | None:intergenic | 45.0% | |
| CTTAAGTGAGGGCAAGAACA+AGG | + | chr8.3:69928327-69928346 | None:intergenic | 45.0% | |
| CTTGTTCTTGCCCTCACTTA+AGG | - | chr8.3:69928325-69928344 | MS.gene051088:intron | 45.0% | |
| CTTTCACTCTCTGATTCACC+AGG | - | chr8.3:69929260-69929279 | MS.gene051088:intron | 45.0% | |
| GGCAATACAATGTTGTGCTG+TGG | - | chr8.3:69928346-69928365 | MS.gene051088:intron | 45.0% | |
| GTGCTGTAAAACTCTTGCAG+TGG | + | chr8.3:69928818-69928837 | None:intergenic | 45.0% | |
| TAGGAACACGCGTCATATGT+GGG | + | chr8.3:69928233-69928252 | None:intergenic | 45.0% | |
| TCAGGCACAGAAAGTGGAAA+GGG | - | chr8.3:69929798-69929817 | MS.gene051088:intron | 45.0% | |
| TTCAGGCACAGAAAGTGGAA+AGG | - | chr8.3:69929797-69929816 | MS.gene051088:intron | 45.0% | |
| AGGAACACGCGTCATATGTG+GGG | + | chr8.3:69928232-69928251 | None:intergenic | 50.0% | |
| GCAGCTAACGCTGTTCTTGA+GGG | - | chr8.3:69928003-69928022 | MS.gene051088:intron | 50.0% | |
| GCATGTCAAAACGGACGACA+TGG | + | chr8.3:69929708-69929727 | None:intergenic | 50.0% | |
| GCCTGTGAGAGGGTAATTGT+TGG | - | chr8.3:69928027-69928046 | MS.gene051088:intron | 50.0% | |
| GCTCGTTGCCATACTAGTAC+AGG | + | chr8.3:69928848-69928867 | None:intergenic | 50.0% | |
| GTAGGAACACGCGTCATATG+TGG | + | chr8.3:69928234-69928253 | None:intergenic | 50.0% | |
| TGCAGCTAACGCTGTTCTTG+AGG | - | chr8.3:69928002-69928021 | MS.gene051088:intron | 50.0% | |
| !! | ACGATGATGATGGGTGTTGG+TGG | - | chr8.3:69928707-69928726 | MS.gene051088:intron | 50.0% |
| !! | TGGTGGCTTGGTGCAATAGT+TGG | - | chr8.3:69928724-69928743 | MS.gene051088:intron | 50.0% |
| !! | TTTTCAGGATGTGGAGAGGG+AGG | - | chr8.3:69928200-69928219 | MS.gene051088:intron | 50.0% |
| GGAACACGCGTCATATGTGG+GGG | + | chr8.3:69928231-69928250 | None:intergenic | 55.0% | |
| !! | GATGATGGGTGTTGGTGGCT+TGG | - | chr8.3:69928712-69928731 | MS.gene051088:intron | 55.0% |
| !! | TCTTGAGGGTGCCTGTGAGA+GGG | - | chr8.3:69928017-69928036 | MS.gene051088:intron | 55.0% |
| !! | TTCTTGAGGGTGCCTGTGAG+AGG | - | chr8.3:69928016-69928035 | MS.gene051088:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 69927898 | 69929879 | 69927898 | ID=MS.gene051088 |
| chr8.3 | mRNA | 69927898 | 69929879 | 69927898 | ID=MS.gene051088.t1;Parent=MS.gene051088 |
| chr8.3 | exon | 69929849 | 69929879 | 69929849 | ID=MS.gene051088.t1.exon1;Parent=MS.gene051088.t1 |
| chr8.3 | CDS | 69929849 | 69929879 | 69929849 | ID=cds.MS.gene051088.t1;Parent=MS.gene051088.t1 |
| chr8.3 | exon | 69929655 | 69929770 | 69929655 | ID=MS.gene051088.t1.exon2;Parent=MS.gene051088.t1 |
| chr8.3 | CDS | 69929655 | 69929770 | 69929655 | ID=cds.MS.gene051088.t1;Parent=MS.gene051088.t1 |
| chr8.3 | exon | 69929508 | 69929570 | 69929508 | ID=MS.gene051088.t1.exon3;Parent=MS.gene051088.t1 |
| chr8.3 | CDS | 69929508 | 69929570 | 69929508 | ID=cds.MS.gene051088.t1;Parent=MS.gene051088.t1 |
| chr8.3 | exon | 69927898 | 69927975 | 69927898 | ID=MS.gene051088.t1.exon4;Parent=MS.gene051088.t1 |
| chr8.3 | CDS | 69927898 | 69927975 | 69927898 | ID=cds.MS.gene051088.t1;Parent=MS.gene051088.t1 |
| Gene Sequence |
| Protein sequence |
