Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22968.t1 | XP_024625354.1 | 100 | 82 | 0 | 0 | 1 | 82 | 1 | 82 | 1.40E-41 | 178.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22968.t1 | O82238 | 84.1 | 82 | 13 | 0 | 1 | 82 | 36 | 117 | 2.0e-36 | 152.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22968.t1 | G7KRW9 | 100.0 | 82 | 0 | 0 | 1 | 82 | 1 | 82 | 1.0e-41 | 178.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene22968 | 0.887547 | 1.30E-72 | -1.69E-46 |
| MS.gene049340 | MS.gene22968 | 0.821861 | 3.22E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene22968 | 0.856102 | 4.04E-62 | -1.69E-46 |
| MS.gene049382 | MS.gene22968 | 0.804576 | 2.02E-49 | -1.69E-46 |
| MS.gene049653 | MS.gene22968 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene22968 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene22968 | 0.804082 | 2.56E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene22968 | 0.925831 | 1.08E-90 | -1.69E-46 |
| MS.gene050303 | MS.gene22968 | 0.827419 | 1.58E-54 | -1.69E-46 |
| MS.gene050317 | MS.gene22968 | 0.812423 | 4.27E-51 | -1.69E-46 |
| MS.gene050320 | MS.gene22968 | 0.836715 | 7.96E-57 | -1.69E-46 |
| MS.gene050437 | MS.gene22968 | 0.84044 | 8.68E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene22968 | 0.841215 | 5.44E-58 | -1.69E-46 |
| MS.gene050752 | MS.gene22968 | 0.837592 | 4.75E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene22968 | 0.853523 | 2.26E-61 | -1.69E-46 |
| MS.gene050838 | MS.gene22968 | 0.857483 | 1.58E-62 | -1.69E-46 |
| MS.gene050955 | MS.gene22968 | 0.808545 | 2.94E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene22968 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene22968 | 0.851838 | 6.84E-61 | -1.69E-46 |
| MS.gene051088 | MS.gene22968 | 0.808745 | 2.66E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene22968 | 0.832029 | 1.19E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene22968 | 0.860848 | 1.55E-63 | -1.69E-46 |
| MS.gene051245 | MS.gene22968 | 0.881693 | 1.94E-70 | -1.69E-46 |
| MS.gene051328 | MS.gene22968 | 0.871932 | 4.69E-67 | -1.69E-46 |
| MS.gene051330 | MS.gene22968 | 0.844415 | 7.67E-59 | -1.69E-46 |
| MS.gene051349 | MS.gene22968 | 0.820074 | 8.31E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene22968 | 0.863606 | 2.21E-64 | -1.69E-46 |
| MS.gene051451 | MS.gene22968 | 0.831119 | 2.00E-55 | -1.69E-46 |
| MS.gene051577 | MS.gene22968 | 0.804196 | 2.43E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene22968 | 0.848888 | 4.60E-60 | -1.69E-46 |
| MS.gene051746 | MS.gene22968 | 0.862787 | 3.96E-64 | -1.69E-46 |
| MS.gene051748 | MS.gene22968 | 0.860767 | 1.64E-63 | -1.69E-46 |
| MS.gene051756 | MS.gene22968 | 0.846554 | 2.02E-59 | -1.69E-46 |
| MS.gene051757 | MS.gene22968 | 0.868056 | 8.67E-66 | -1.69E-46 |
| MS.gene051789 | MS.gene22968 | 0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene22968 | 0.839553 | 1.48E-57 | -1.69E-46 |
| MS.gene05188 | MS.gene22968 | 0.805538 | 1.27E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene22968 | 0.887183 | 1.79E-72 | -1.69E-46 |
| MS.gene051975 | MS.gene22968 | 0.80726 | 5.51E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene22968 | 0.821301 | 4.34E-53 | -1.69E-46 |
| MS.gene052202 | MS.gene22968 | 0.818088 | 2.35E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene22968 | 0.869633 | 2.67E-66 | -1.69E-46 |
| MS.gene052302 | MS.gene22968 | 0.843814 | 1.11E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene22968 | 0.839783 | 1.29E-57 | -1.69E-46 |
| MS.gene052856 | MS.gene22968 | 0.803782 | 2.96E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene22968 | 0.815499 | 8.96E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene22968 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene22968 | 0.882287 | 1.18E-70 | -1.69E-46 |
| MS.gene053058 | MS.gene22968 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene22968 | 0.869252 | 3.56E-66 | -1.69E-46 |
| MS.gene053590 | MS.gene22968 | 0.837997 | 3.74E-57 | -1.69E-46 |
| MS.gene053952 | MS.gene22968 | 0.83551 | 1.61E-56 | -1.69E-46 |
| MS.gene054250 | MS.gene22968 | 0.805689 | 1.18E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene22968 | 0.83184 | 1.33E-55 | -1.69E-46 |
| MS.gene055133 | MS.gene22968 | 0.831979 | 1.23E-55 | -1.69E-46 |
| MS.gene055162 | MS.gene22968 | 0.861873 | 7.56E-64 | -1.69E-46 |
| MS.gene055174 | MS.gene22968 | 0.800165 | 1.64E-48 | -1.69E-46 |
| MS.gene055424 | MS.gene22968 | 0.83558 | 1.54E-56 | -1.69E-46 |
| MS.gene055441 | MS.gene22968 | 0.825727 | 4.00E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene22968 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene22968 | -0.819536 | 1.10E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene22968 | 0.813708 | 2.23E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene22968 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene22968 | 0.847904 | 8.61E-60 | -1.69E-46 |
| MS.gene056580 | MS.gene22968 | 0.852441 | 4.61E-61 | -1.69E-46 |
| MS.gene056601 | MS.gene22968 | 0.861173 | 1.24E-63 | -1.69E-46 |
| MS.gene056631 | MS.gene22968 | 0.914153 | 2.68E-84 | -1.69E-46 |
| MS.gene056760 | MS.gene22968 | 0.868214 | 7.71E-66 | -1.69E-46 |
| MS.gene056787 | MS.gene22968 | 0.813365 | 2.66E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene22968 | 0.808873 | 2.50E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene22968 | 0.879214 | 1.50E-69 | -1.69E-46 |
| MS.gene057079 | MS.gene22968 | 0.821436 | 4.04E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene22968 | 0.871264 | 7.80E-67 | -1.69E-46 |
| MS.gene057140 | MS.gene22968 | 0.898216 | 6.60E-77 | -1.69E-46 |
| MS.gene057234 | MS.gene22968 | 0.908519 | 1.56E-81 | -1.69E-46 |
| MS.gene057392 | MS.gene22968 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene22968 | 0.801687 | 8.01E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene22968 | 0.855035 | 8.26E-62 | -1.69E-46 |
| MS.gene05795 | MS.gene22968 | 0.811514 | 6.74E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene22968 | 0.800264 | 1.56E-48 | -1.69E-46 |
| MS.gene058054 | MS.gene22968 | 0.840993 | 6.22E-58 | -1.69E-46 |
| MS.gene058055 | MS.gene22968 | 0.891553 | 3.58E-74 | -1.69E-46 |
| MS.gene058084 | MS.gene22968 | 0.831493 | 1.62E-55 | -1.69E-46 |
| MS.gene05809 | MS.gene22968 | 0.830404 | 2.99E-55 | -1.69E-46 |
| MS.gene058182 | MS.gene22968 | 0.839891 | 1.21E-57 | -1.69E-46 |
| MS.gene058238 | MS.gene22968 | 0.883775 | 3.37E-71 | -1.69E-46 |
| MS.gene058646 | MS.gene22968 | 0.83307 | 6.59E-56 | -1.69E-46 |
| MS.gene058654 | MS.gene22968 | 0.833248 | 5.95E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene22968 | 0.946557 | 3.68E-105 | -1.69E-46 |
| MS.gene059249 | MS.gene22968 | 0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene059317 | MS.gene22968 | 0.817459 | 3.26E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene22968 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene22968 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene22968 | 0.811779 | 5.90E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene22968 | 0.883038 | 6.29E-71 | -1.69E-46 |
| MS.gene06001 | MS.gene22968 | 0.90891 | 1.02E-81 | -1.69E-46 |
| MS.gene06011 | MS.gene22968 | 0.813851 | 2.08E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene22968 | 0.846013 | 2.84E-59 | -1.69E-46 |
| MS.gene060463 | MS.gene22968 | 0.82791 | 1.21E-54 | -1.69E-46 |
| MS.gene060465 | MS.gene22968 | 0.831377 | 1.73E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene22968 | 0.81864 | 1.76E-52 | -1.69E-46 |
| MS.gene060702 | MS.gene22968 | 0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene22968 | 0.831001 | 2.14E-55 | -1.69E-46 |
| MS.gene061145 | MS.gene22968 | 0.864711 | 9.99E-65 | -1.69E-46 |
| MS.gene06118 | MS.gene22968 | 0.804558 | 2.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22968.t1 | MTR_7g108810 | 100.000 | 82 | 0 | 0 | 1 | 82 | 1 | 82 | 5.96e-58 | 182 |
| MS.gene22968.t1 | MTR_8g058533 | 69.231 | 52 | 12 | 1 | 35 | 82 | 4 | 55 | 9.92e-18 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22968.t1 | AT3G62790 | 84.146 | 82 | 13 | 0 | 1 | 82 | 1 | 82 | 1.11e-48 | 149 |
| MS.gene22968.t1 | AT2G47690 | 84.146 | 82 | 13 | 0 | 1 | 82 | 36 | 117 | 5.28e-48 | 148 |
| MS.gene22968.t1 | AT2G47690 | 73.913 | 69 | 13 | 1 | 1 | 69 | 36 | 99 | 4.42e-31 | 105 |
| MS.gene22968.t1 | AT2G47690 | 92.000 | 50 | 4 | 0 | 1 | 50 | 36 | 85 | 2.40e-30 | 102 |
Find 25 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGTCGTTGCTACGATTTC+TGG | 0.156291 | 7.3:+6178731 | MS.gene22968:CDS |
| CCCGTCATCTTGACCTTTCC+TGG | 0.181566 | 7.3:-6181735 | None:intergenic |
| ACGAAGGAGAACACAATCTT+TGG | 0.275115 | 7.3:-6178791 | None:intergenic |
| AGGGATTGAAGGTACCTCTT+TGG | 0.327899 | 7.3:-6178842 | None:intergenic |
| TGAAGAAATGGCGTCAGGTT+GGG | 0.377961 | 7.3:+6178693 | None:intergenic |
| CGAAGGAGAACACAATCTTT+GGG | 0.421263 | 7.3:-6178790 | None:intergenic |
| GTTGTTCCTCCTTGTAAATC+CGG | 0.426154 | 7.3:-6181694 | None:intergenic |
| TGCAGTTCCAACGAAGAAAC+CGG | 0.439313 | 7.3:+6181675 | MS.gene22968:intron |
| TGTAAATCCGGTTTCTTCGT+TGG | 0.454351 | 7.3:-6181682 | None:intergenic |
| GAAGAAATGGCGTCAGGTTG+GGG | 0.457573 | 7.3:+6178694 | None:intergenic |
| GCAAACTAAGAGCTGCTGCC+AGG | 0.505591 | 7.3:+6181717 | MS.gene22968:CDS |
| GCGTCAGGTTGGGGAATCAC+TGG | 0.513534 | 7.3:+6178703 | MS.gene22968:CDS |
| GAAGGTGAAGAAATGGCGTC+AGG | 0.521379 | 7.3:+6178688 | None:intergenic |
| GTGAAGAAATGGCGTCAGGT+TGG | 0.524493 | 7.3:+6178692 | None:intergenic |
| ACGAAGAAACCGGATTTACA+AGG | 0.549458 | 7.3:+6181685 | MS.gene22968:CDS |
| CCAGGAAAGGTCAAGATGAC+GGG | 0.551383 | 7.3:+6181735 | MS.gene22968:CDS |
| GCCAGGAAAGGTCAAGATGA+CGG | 0.552182 | 7.3:+6181734 | MS.gene22968:CDS |
| CTAAGAGCTGCTGCCAGGAA+AGG | 0.556365 | 7.3:+6181722 | MS.gene22968:CDS |
| AAGGTACCTCTTTGGAATGG+TGG | 0.557593 | 7.3:-6178834 | None:intergenic |
| TTGAAGGTACCTCTTTGGAA+TGG | 0.575212 | 7.3:-6178837 | None:intergenic |
| GTACCTCTTTGGAATGGTGG+AGG | 0.591122 | 7.3:-6178831 | None:intergenic |
| TGGGGAATCACTGGTAACAA+AGG | 0.650188 | 7.3:+6178712 | MS.gene22968:CDS |
| ATGCCTCCACCATTCCAAAG+AGG | 0.652254 | 7.3:+6178828 | MS.gene22968:CDS |
| AAGAAACCGGATTTACAAGG+AGG | 0.717521 | 7.3:+6181688 | MS.gene22968:CDS |
| ATTCGAAGTAATCTTCACGA+AGG | 0.720124 | 7.3:-6178807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTAAATTAAACATTTA+AGG | - | chr7.3:6180141-6180160 | None:intergenic | 10.0% |
| !! | AAAAGTAAAAGAAAGAAAAA+GGG | - | chr7.3:6178864-6178883 | None:intergenic | 15.0% |
| !! | GTTAATTAAATATAGAGTAA+AGG | + | chr7.3:6179650-6179669 | MS.gene22968:intron | 15.0% |
| !! | TAAAAGTAAAAGAAAGAAAA+AGG | - | chr7.3:6178865-6178884 | None:intergenic | 15.0% |
| !!! | AGTTGTTTTATGTTTTTTTA+AGG | + | chr7.3:6181530-6181549 | MS.gene22968:intron | 15.0% |
| !!! | GTTGTTTTATGTTTTTTTAA+GGG | + | chr7.3:6181531-6181550 | MS.gene22968:intron | 15.0% |
| !!! | TACAATAATTTGTTAACATA+TGG | - | chr7.3:6181605-6181624 | None:intergenic | 15.0% |
| !!! | TTAGTTGATAACTTAATTAT+AGG | - | chr7.3:6180749-6180768 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATATTGTTTAGA+TGG | + | chr7.3:6179273-6179292 | MS.gene22968:intron | 15.0% |
| !! | AAGGATGAAAAAAAATGATA+TGG | - | chr7.3:6179549-6179568 | None:intergenic | 20.0% |
| !! | ACTTAATTATAGGAAGAAAA+AGG | - | chr7.3:6180739-6180758 | None:intergenic | 20.0% |
| !! | AGGATGAAAAAAAATGATAT+GGG | - | chr7.3:6179548-6179567 | None:intergenic | 20.0% |
| !! | AGTAAAACAAAATAAGGTTT+GGG | - | chr7.3:6179196-6179215 | None:intergenic | 20.0% |
| !! | ATAATATGGTGGTTAATTTA+TGG | + | chr7.3:6180283-6180302 | MS.gene22968:intron | 20.0% |
| !! | ATCAACATTAGTCATTTATA+TGG | - | chr7.3:6181644-6181663 | None:intergenic | 20.0% |
| !! | ATGGATAAAATATTATAGGA+AGG | - | chr7.3:6181028-6181047 | None:intergenic | 20.0% |
| !! | CTTCATGGATAAAATATTAT+AGG | - | chr7.3:6181032-6181051 | None:intergenic | 20.0% |
| !! | TAAATTAACCACCATATTAT+TGG | - | chr7.3:6180283-6180302 | None:intergenic | 20.0% |
| !! | TGGATAAAATATTATAGGAA+GGG | - | chr7.3:6181027-6181046 | None:intergenic | 20.0% |
| !! | TTAATTAACAGAAAATACGA+GGG | - | chr7.3:6179639-6179658 | None:intergenic | 20.0% |
| !! | TTTAATTAACAGAAAATACG+AGG | - | chr7.3:6179640-6179659 | None:intergenic | 20.0% |
| !!! | CATAAAACAACTTTTTCTAT+CGG | - | chr7.3:6181522-6181541 | None:intergenic | 20.0% |
| ! | AATAGACTGAAATTGAATGT+AGG | - | chr7.3:6179753-6179772 | None:intergenic | 25.0% |
| ! | AGTTGACAAAAATTGAGTTA+TGG | + | chr7.3:6180590-6180609 | MS.gene22968:intron | 25.0% |
| ! | ATTTAAATCAACCAGTCTTT+AGG | - | chr7.3:6181300-6181319 | None:intergenic | 25.0% |
| ! | CAGTAAAACAAAATAAGGTT+TGG | - | chr7.3:6179197-6179216 | None:intergenic | 25.0% |
| ! | CATTAATCTTCACGAAATTA+GGG | - | chr7.3:6178953-6178972 | None:intergenic | 25.0% |
| ! | GAAAAATTGATACATGATGA+TGG | + | chr7.3:6179899-6179918 | MS.gene22968:intron | 25.0% |
| ! | GTTAAACTATAATTGCTACA+GGG | - | chr7.3:6179731-6179750 | None:intergenic | 25.0% |
| ! | TAATTAACAGAAAATACGAG+GGG | - | chr7.3:6179638-6179657 | None:intergenic | 25.0% |
| ! | TATGATTCTCCAATAACTTA+CGG | + | chr7.3:6180220-6180239 | MS.gene22968:intron | 25.0% |
| ! | TCATTAATCTTCACGAAATT+AGG | - | chr7.3:6178954-6178973 | None:intergenic | 25.0% |
| ! | TCTCAAACTAAGATAAATTG+AGG | - | chr7.3:6179003-6179022 | None:intergenic | 25.0% |
| ! | TTATCAACTAATATTGCTCT+GGG | + | chr7.3:6180758-6180777 | MS.gene22968:intron | 25.0% |
| ! | TTTATCCATGAAGTTTACTT+TGG | + | chr7.3:6181039-6181058 | MS.gene22968:intron | 25.0% |
| !! | ACTAGATTTTTCTCATATCA+AGG | - | chr7.3:6179411-6179430 | None:intergenic | 25.0% |
| !! | AGAAAGGTATAATTGAAAAG+AGG | + | chr7.3:6179460-6179479 | MS.gene22968:intron | 25.0% |
| !! | GAAAGGTATAATTGAAAAGA+GGG | + | chr7.3:6179461-6179480 | MS.gene22968:intron | 25.0% |
| !! | GTAACTTCTTTTTATGTTTG+TGG | + | chr7.3:6181162-6181181 | MS.gene22968:intron | 25.0% |
| !! | TGAGGTTATAATTTTTCATG+TGG | + | chr7.3:6180341-6180360 | MS.gene22968:intron | 25.0% |
| !! | TTTTTCTTGTTACGTTTATC+TGG | + | chr7.3:6180642-6180661 | MS.gene22968:intron | 25.0% |
| !!! | AACCTTATTTTGTTTTACTG+TGG | + | chr7.3:6179197-6179216 | MS.gene22968:intron | 25.0% |
| !!! | ATTTGTTTTCTCTCAATTTG+AGG | + | chr7.3:6179501-6179520 | MS.gene22968:intron | 25.0% |
| !!! | TAAAGGTCTTTTAGCTTATT+TGG | + | chr7.3:6180395-6180414 | MS.gene22968:intron | 25.0% |
| !!! | TTTGTTTTCTCTCAATTTGA+GGG | + | chr7.3:6179502-6179521 | MS.gene22968:intron | 25.0% |
| !!! | TTTTGAAAAACGAAATCAAG+TGG | - | chr7.3:6178930-6178949 | None:intergenic | 25.0% |
| AAAAAATGATATGGGACTCA+CGG | - | chr7.3:6179540-6179559 | None:intergenic | 30.0% | |
| AAACAAATAGCTTGAGAAGA+AGG | - | chr7.3:6179489-6179508 | None:intergenic | 30.0% | |
| AAATCTGATTGTGCTAATCA+TGG | - | chr7.3:6181350-6181369 | None:intergenic | 30.0% | |
| AAGAAAGAAAAAGGGATTGA+AGG | - | chr7.3:6178856-6178875 | None:intergenic | 30.0% | |
| AATCTACATCAACCTTGATT+TGG | + | chr7.3:6180055-6180074 | MS.gene22968:intron | 30.0% | |
| AATCTGATTGTGCTAATCAT+GGG | - | chr7.3:6181349-6181368 | None:intergenic | 30.0% | |
| AGTGAACTTGGAATTACAAT+GGG | + | chr7.3:6180114-6180133 | MS.gene22968:intron | 30.0% | |
| ATATTATAGGAAGGGTTTCT+AGG | - | chr7.3:6181019-6181038 | None:intergenic | 30.0% | |
| ATCTTACAATCAGGTACTTT+GGG | + | chr7.3:6180697-6180716 | MS.gene22968:intron | 30.0% | |
| CAACCAATGAAAACAATACA+GGG | + | chr7.3:6179776-6179795 | MS.gene22968:intron | 30.0% | |
| CAGATGAGAAATAGTTAGAA+AGG | + | chr7.3:6179444-6179463 | MS.gene22968:intron | 30.0% | |
| GCATGACAAAATAAGCTAAA+AGG | - | chr7.3:6180404-6180423 | None:intergenic | 30.0% | |
| GCTATTATGTTTGTAATGTG+TGG | - | chr7.3:6180565-6180584 | None:intergenic | 30.0% | |
| GGTTAAACTATAATTGCTAC+AGG | - | chr7.3:6179732-6179751 | None:intergenic | 30.0% | |
| GTTATCAACTAATATTGCTC+TGG | + | chr7.3:6180757-6180776 | MS.gene22968:intron | 30.0% | |
| TAATGTGTGGTTGATTGAAA+AGG | - | chr7.3:6180552-6180571 | None:intergenic | 30.0% | |
| TCAACCAATGAAAACAATAC+AGG | + | chr7.3:6179775-6179794 | MS.gene22968:intron | 30.0% | |
| TGCCACAGTAAAACAAAATA+AGG | - | chr7.3:6179202-6179221 | None:intergenic | 30.0% | |
| TGTTACGTTTATCTGGTTAA+AGG | + | chr7.3:6180649-6180668 | MS.gene22968:intron | 30.0% | |
| TTGGTGAGAAAAGTTTATTC+TGG | + | chr7.3:6181058-6181077 | MS.gene22968:intron | 30.0% | |
| TTGTTAACATATGGAACACT+GGG | - | chr7.3:6181596-6181615 | None:intergenic | 30.0% | |
| TTTACATCGAACAAAACAAC+AGG | - | chr7.3:6179336-6179355 | None:intergenic | 30.0% | |
| TTTGTTAACATATGGAACAC+TGG | - | chr7.3:6181597-6181616 | None:intergenic | 30.0% | |
| ! | AATAGAGTAGACTAGCTATT+TGG | - | chr7.3:6180491-6180510 | None:intergenic | 30.0% |
| ! | AATCCCTGTATTGTTTTCAT+TGG | - | chr7.3:6179782-6179801 | None:intergenic | 30.0% |
| ! | TGCTGTAATATAGTTTTCGA+AGG | - | chr7.3:6181231-6181250 | None:intergenic | 30.0% |
| ! | TTGTTTTCTCTCAATTTGAG+GGG | + | chr7.3:6179503-6179522 | MS.gene22968:intron | 30.0% |
| ! | TTTCGAAGGAATTTGAAACA+AGG | - | chr7.3:6181217-6181236 | None:intergenic | 30.0% |
| ! | TTTTTCTCGTTACGTTTATC+TGG | + | chr7.3:6180371-6180390 | MS.gene22968:intron | 30.0% |
| !! | AAATTGATACATGATGATGG+TGG | + | chr7.3:6179902-6179921 | MS.gene22968:intron | 30.0% |
| !! | TTAACATGTGTTACTTGGTT+AGG | - | chr7.3:6179980-6179999 | None:intergenic | 30.0% |
| !!! | GCATTTGGTTTTGTTTCATA+TGG | + | chr7.3:6180305-6180324 | MS.gene22968:intron | 30.0% |
| AAGCATTCTTTCCTACTACA+TGG | - | chr7.3:6180876-6180895 | None:intergenic | 35.0% | |
| ACAGAAAGTTGACCAAGATA+AGG | + | chr7.3:6181422-6181441 | MS.gene22968:intron | 35.0% | |
| ATTCGAAGTAATCTTCACGA+AGG | - | chr7.3:6178810-6178829 | None:intergenic | 35.0% | |
| CAACAGAATTACAGTGAACT+TGG | + | chr7.3:6180102-6180121 | MS.gene22968:intron | 35.0% | |
| CAGTGAACTTGGAATTACAA+TGG | + | chr7.3:6180113-6180132 | MS.gene22968:intron | 35.0% | |
| CCCGAACAATGATTAAAGTT+CGG | + | chr7.3:6179152-6179171 | MS.gene22968:intron | 35.0% | |
| CCCGAACTTTAATCATTGTT+CGG | - | chr7.3:6179156-6179175 | None:intergenic | 35.0% | |
| CCGAACAATGATTAAAGTTC+GGG | + | chr7.3:6179153-6179172 | MS.gene22968:intron | 35.0% | |
| CCGAACTTTAATCATTGTTC+GGG | - | chr7.3:6179155-6179174 | None:intergenic | 35.0% | |
| CGTTACGTTTATCTGGTTAA+AGG | + | chr7.3:6180378-6180397 | MS.gene22968:intron | 35.0% | |
| CTCATATTTCAGCAGATGTT+TGG | - | chr7.3:6180518-6180537 | None:intergenic | 35.0% | |
| CTTTGTTGCATAAAGAGCTT+TGG | + | chr7.3:6180989-6181008 | MS.gene22968:intron | 35.0% | |
| GAGGAAAGAAAGAAACTGTT+GGG | + | chr7.3:6181468-6181487 | MS.gene22968:intron | 35.0% | |
| GATCTTACAATCAGGTACTT+TGG | + | chr7.3:6180696-6180715 | MS.gene22968:intron | 35.0% | |
| GATTAGCACAATCAGATTTG+TGG | + | chr7.3:6181351-6181370 | MS.gene22968:intron | 35.0% | |
| GCCAAAAGCTAATTCACAAT+GGG | - | chr7.3:6181137-6181156 | None:intergenic | 35.0% | |
| GGAATATGACAACAGTCATA+TGG | + | chr7.3:6180611-6180630 | MS.gene22968:intron | 35.0% | |
| GGGGAAACTAAAACATATGT+GGG | + | chr7.3:6180938-6180957 | MS.gene22968:intron | 35.0% | |
| GGTGGTTAATTTATGGCATT+TGG | + | chr7.3:6180290-6180309 | MS.gene22968:intron | 35.0% | |
| GTAAAACAAGACCTAAAGAC+TGG | + | chr7.3:6181286-6181305 | MS.gene22968:intron | 35.0% | |
| GTTATTGGGATGCAATGTAT+CGG | + | chr7.3:6179116-6179135 | MS.gene22968:intron | 35.0% | |
| TCTCACCAAAGTAAACTTCA+TGG | - | chr7.3:6181047-6181066 | None:intergenic | 35.0% | |
| TGAGGAAAGAAAGAAACTGT+TGG | + | chr7.3:6181467-6181486 | MS.gene22968:intron | 35.0% | |
| TGCCAAAAGCTAATTCACAA+TGG | - | chr7.3:6181138-6181157 | None:intergenic | 35.0% | |
| TTATTCTGGTACTCAAGTTC+AGG | + | chr7.3:6181072-6181091 | MS.gene22968:intron | 35.0% | |
| TTATTGGGATGCAATGTATC+GGG | + | chr7.3:6179117-6179136 | MS.gene22968:intron | 35.0% | |
| TTTAAGGATGTAAAGTCCTG+TGG | + | chr7.3:6180254-6180273 | MS.gene22968:intron | 35.0% | |
| ! | AGGAAAGAATGCTTTTGGTA+GGG | + | chr7.3:6180882-6180901 | MS.gene22968:intron | 35.0% |
| ! | AGGTACTTTGGGTACATTTT+AGG | + | chr7.3:6180708-6180727 | MS.gene22968:intron | 35.0% |
| ! | CTATTTCTCATCTGTGATAC+AGG | - | chr7.3:6179438-6179457 | None:intergenic | 35.0% |
| ! | GATGTCGATTATGGGTTATT+GGG | + | chr7.3:6179102-6179121 | MS.gene22968:intron | 35.0% |
| ! | GTAGTAGGAAAGAATGCTTT+TGG | + | chr7.3:6180877-6180896 | MS.gene22968:intron | 35.0% |
| ! | GTCTGTTAACATGTGTTACT+TGG | - | chr7.3:6179985-6180004 | None:intergenic | 35.0% |
| ! | TAGGAAAGAATGCTTTTGGT+AGG | + | chr7.3:6180881-6180900 | MS.gene22968:intron | 35.0% |
| ! | TAGGCACTTGTTAGTAAACA+GGG | + | chr7.3:6179813-6179832 | MS.gene22968:intron | 35.0% |
| !! | GACATTCTCTACTGCTTTTA+AGG | - | chr7.3:6181098-6181117 | None:intergenic | 35.0% |
| !! | TAGTGCTTTTTATGCACCTT+GGG | + | chr7.3:6181252-6181271 | MS.gene22968:intron | 35.0% |
| !! | TGGGAAGTATTGAAAATGAC+TGG | + | chr7.3:6180957-6180976 | MS.gene22968:intron | 35.0% |
| !!! | ACCCATTGTGAATTAGCTTT+TGG | + | chr7.3:6181133-6181152 | MS.gene22968:intron | 35.0% |
| !!! | GTCATGCTGATTTTTCATGT+GGG | + | chr7.3:6180455-6180474 | MS.gene22968:intron | 35.0% |
| !!! | GTGAATTAGCTTTTGGCAAA+TGG | + | chr7.3:6181140-6181159 | MS.gene22968:intron | 35.0% |
| !!! | TCATGCTGATTTTTCATGTG+GGG | + | chr7.3:6180456-6180475 | MS.gene22968:intron | 35.0% |
| !!! | TGTCATGCTGATTTTTCATG+TGG | + | chr7.3:6180454-6180473 | MS.gene22968:intron | 35.0% |
| !!! | TTTTTTCTCCACAGCACAAT+GGG | + | chr7.3:6179570-6179589 | MS.gene22968:intron | 35.0% |
| AAGAAACCGGATTTACAAGG+AGG | + | chr7.3:6181688-6181707 | MS.gene22968:CDS | 40.0% | |
| ACAGACTTAACATCCTGTAG+TGG | + | chr7.3:6179999-6180018 | MS.gene22968:intron | 40.0% | |
| ACGAAGAAACCGGATTTACA+AGG | + | chr7.3:6181685-6181704 | MS.gene22968:CDS | 40.0% | |
| ACGAAGGAGAACACAATCTT+TGG | - | chr7.3:6178794-6178813 | None:intergenic | 40.0% | |
| CAATAGAAACTCTACTCGCA+AGG | - | chr7.3:6181390-6181409 | None:intergenic | 40.0% | |
| CACAATCAGATTTGTGGCAT+GGG | + | chr7.3:6181357-6181376 | MS.gene22968:intron | 40.0% | |
| CAGACTTAACATCCTGTAGT+GGG | + | chr7.3:6180000-6180019 | MS.gene22968:intron | 40.0% | |
| CGAAGGAGAACACAATCTTT+GGG | - | chr7.3:6178793-6178812 | None:intergenic | 40.0% | |
| GAAAGTTGACCAAGATAAGG+AGG | + | chr7.3:6181425-6181444 | MS.gene22968:intron | 40.0% | |
| GGGGGAAACTAAAACATATG+TGG | + | chr7.3:6180937-6180956 | MS.gene22968:intron | 40.0% | |
| GTCATGCTGATCTTACAATC+AGG | + | chr7.3:6180688-6180707 | MS.gene22968:intron | 40.0% | |
| GTGAAACTTACCTGCTTGTT+GGG | + | chr7.3:6180917-6180936 | MS.gene22968:intron | 40.0% | |
| GTGTCATGACCGTAAGTTAT+TGG | - | chr7.3:6180232-6180251 | None:intergenic | 40.0% | |
| GTTGTTCCTCCTTGTAAATC+CGG | - | chr7.3:6181697-6181716 | None:intergenic | 40.0% | |
| TACATGGCTATTGAGGTGAA+AGG | - | chr7.3:6180860-6180879 | None:intergenic | 40.0% | |
| TACGGTCATGACACAGTTTA+AGG | + | chr7.3:6180238-6180257 | MS.gene22968:intron | 40.0% | |
| TATGGCGCAGTTTGATTATG+AGG | + | chr7.3:6180323-6180342 | MS.gene22968:intron | 40.0% | |
| TGTAAATCCGGTTTCTTCGT+TGG | - | chr7.3:6181685-6181704 | None:intergenic | 40.0% | |
| TGTGCTGTGGAGAAAAAACA+AGG | - | chr7.3:6179568-6179587 | None:intergenic | 40.0% | |
| TTCCTACTACATGGCTATTG+AGG | - | chr7.3:6180867-6180886 | None:intergenic | 40.0% | |
| TTGTTAGTAAACAGGGGATG+AGG | + | chr7.3:6179820-6179839 | MS.gene22968:intron | 40.0% | |
| ! | AATTTTCTCCCATTGTGCTG+TGG | - | chr7.3:6179581-6179600 | None:intergenic | 40.0% |
| ! | AGGCACTTGTTAGTAAACAG+GGG | + | chr7.3:6179814-6179833 | MS.gene22968:intron | 40.0% |
| ! | CGATGTCGATTATGGGTTAT+TGG | + | chr7.3:6179101-6179120 | MS.gene22968:intron | 40.0% |
| ! | CTAGGCACTTGTTAGTAAAC+AGG | + | chr7.3:6179812-6179831 | MS.gene22968:intron | 40.0% |
| ! | GGAAAGAATGCTTTTGGTAG+GGG | + | chr7.3:6180883-6180902 | MS.gene22968:intron | 40.0% |
| ! | TCTGACTCGATGTCGATTAT+GGG | + | chr7.3:6179094-6179113 | MS.gene22968:intron | 40.0% |
| ! | TGAAACTTACCTGCTTGTTG+GGG | + | chr7.3:6180918-6180937 | MS.gene22968:intron | 40.0% |
| ! | TTTTCTCTCAATTTGAGGGG+AGG | + | chr7.3:6179506-6179525 | MS.gene22968:intron | 40.0% |
| !! | AGTGCTTTTTATGCACCTTG+GGG | + | chr7.3:6181253-6181272 | MS.gene22968:intron | 40.0% |
| !! | CTAGTGCTTTTTATGCACCT+TGG | + | chr7.3:6181251-6181270 | MS.gene22968:intron | 40.0% |
| !! | TTGAAGGTACCTCTTTGGAA+TGG | - | chr7.3:6178840-6178859 | None:intergenic | 40.0% |
| !!! | GTTTTTTCTCCACAGCACAA+TGG | + | chr7.3:6179569-6179588 | MS.gene22968:intron | 40.0% |
| AAGGTCGTTGCTACGATTTC+TGG | + | chr7.3:6178731-6178750 | MS.gene22968:CDS | 45.0% | |
| ACCATATTATTGGCAGCCAC+AGG | - | chr7.3:6180273-6180292 | None:intergenic | 45.0% | |
| AGAAATGAGAGTCCCACTAC+AGG | - | chr7.3:6180015-6180034 | None:intergenic | 45.0% | |
| CACCTCAATAGCCATGTAGT+AGG | + | chr7.3:6180862-6180881 | MS.gene22968:intron | 45.0% | |
| CATAATCGACATCGAGTCAG+AGG | - | chr7.3:6179095-6179114 | None:intergenic | 45.0% | |
| GCACAATCAGATTTGTGGCA+TGG | + | chr7.3:6181356-6181375 | MS.gene22968:intron | 45.0% | |
| GGTGAAACTTACCTGCTTGT+TGG | + | chr7.3:6180916-6180935 | MS.gene22968:intron | 45.0% | |
| TACTTGGTTAGGCAGTTGGT+TGG | - | chr7.3:6179969-6179988 | None:intergenic | 45.0% | |
| TCCTGTGGCTGCCAATAATA+TGG | + | chr7.3:6180269-6180288 | MS.gene22968:intron | 45.0% | |
| TGACCAAGATAAGGAGGCTT+GGG | + | chr7.3:6181431-6181450 | MS.gene22968:intron | 45.0% | |
| TGCAGTTCCAACGAAGAAAC+CGG | + | chr7.3:6181675-6181694 | MS.gene22968:intron | 45.0% | |
| TGGGGAATCACTGGTAACAA+AGG | + | chr7.3:6178712-6178731 | MS.gene22968:CDS | 45.0% | |
| TGTGGCTGCCAATAATATGG+TGG | + | chr7.3:6180272-6180291 | MS.gene22968:intron | 45.0% | |
| TTAGTAAACAGGGGATGAGG+TGG | + | chr7.3:6179823-6179842 | MS.gene22968:intron | 45.0% | |
| TTGACCAAGATAAGGAGGCT+TGG | + | chr7.3:6181430-6181449 | MS.gene22968:intron | 45.0% | |
| TTTATGCACCTTGGGGGAAA+AGG | + | chr7.3:6181260-6181279 | MS.gene22968:intron | 45.0% | |
| ! | CGAGAGAGAGCATGATTGAA+TGG | + | chr7.3:6180078-6180097 | MS.gene22968:intron | 45.0% |
| ! | CTCTGACTCGATGTCGATTA+TGG | + | chr7.3:6179093-6179112 | MS.gene22968:intron | 45.0% |
| ! | CTTTTGGTAGGGGCAAGTAA+GGG | + | chr7.3:6180893-6180912 | MS.gene22968:intron | 45.0% |
| ! | GAAACTTACCTGCTTGTTGG+GGG | + | chr7.3:6180919-6180938 | MS.gene22968:intron | 45.0% |
| ! | TTTACTTGCCTTTTCCCCCA+AGG | - | chr7.3:6181271-6181290 | None:intergenic | 45.0% |
| ! | TTTAGTTTCCCCCAACAAGC+AGG | - | chr7.3:6180930-6180949 | None:intergenic | 45.0% |
| ! | TTTTGGTAGGGGCAAGTAAG+GGG | + | chr7.3:6180894-6180913 | MS.gene22968:intron | 45.0% |
| !! | AAGGTACCTCTTTGGAATGG+TGG | - | chr7.3:6178837-6178856 | None:intergenic | 45.0% |
| !! | AGGGATTGAAGGTACCTCTT+TGG | - | chr7.3:6178845-6178864 | None:intergenic | 45.0% |
| !! | GTGCTTTTTATGCACCTTGG+GGG | + | chr7.3:6181254-6181273 | MS.gene22968:intron | 45.0% |
| !! | GTGTTACTTGGTTAGGCAGT+TGG | - | chr7.3:6179973-6179992 | None:intergenic | 45.0% |
| !! | ATTGTAAAAAAAAAAAAAAA+AGG | - | chr7.3:6178888-6178907 | None:intergenic | 5.0% |
| AACAAGCAAGCTCGAGAGCT+TGG | + | chr7.3:6179853-6179872 | MS.gene22968:intron | 50.0% | |
| ACATCGAGTCAGAGGCAACA+AGG | - | chr7.3:6179087-6179106 | None:intergenic | 50.0% | |
| ACCAAGATAAGGAGGCTTGG+GGG | + | chr7.3:6181433-6181452 | MS.gene22968:intron | 50.0% | |
| ATGCCTCCACCATTCCAAAG+AGG | + | chr7.3:6178828-6178847 | MS.gene22968:CDS | 50.0% | |
| CAATGTATCGGGCCAACGTT+CGG | + | chr7.3:6179128-6179147 | MS.gene22968:intron | 50.0% | |
| CCAGGAAAGGTCAAGATGAC+GGG | + | chr7.3:6181735-6181754 | MS.gene22968:CDS | 50.0% | |
| GACCAAGATAAGGAGGCTTG+GGG | + | chr7.3:6181432-6181451 | MS.gene22968:intron | 50.0% | |
| GCCAGGAAAGGTCAAGATGA+CGG | + | chr7.3:6181734-6181753 | MS.gene22968:CDS | 50.0% | |
| TGCTCTCTCTCGCCAAATCA+AGG | - | chr7.3:6180070-6180089 | None:intergenic | 50.0% | |
| TTTGGTAGGGGCAAGTAAGG+GGG | + | chr7.3:6180895-6180914 | MS.gene22968:intron | 50.0% | |
| ! | CAAACGCAGCTCTGACGATA+AGG | - | chr7.3:6179039-6179058 | None:intergenic | 50.0% |
| ! | CAGGGATTGTGCTGATGTCT+AGG | + | chr7.3:6179794-6179813 | MS.gene22968:intron | 50.0% |
| ! | GCTTTTGGTAGGGGCAAGTA+AGG | + | chr7.3:6180892-6180911 | MS.gene22968:intron | 50.0% |
| !! | GTACCTCTTTGGAATGGTGG+AGG | - | chr7.3:6178834-6178853 | None:intergenic | 50.0% |
| ATAAGGAGGCTTGGGGGAAG+AGG | + | chr7.3:6181439-6181458 | MS.gene22968:intron | 55.0% | |
| ATACGAGGGGAGATGCTGAG+AGG | - | chr7.3:6179625-6179644 | None:intergenic | 55.0% | |
| CATTGTTCGGGACCGAACGT+TGG | - | chr7.3:6179143-6179162 | None:intergenic | 55.0% | |
| CCCGTCATCTTGACCTTTCC+TGG | - | chr7.3:6181738-6181757 | None:intergenic | 55.0% | |
| CTAAGAGCTGCTGCCAGGAA+AGG | + | chr7.3:6181722-6181741 | MS.gene22968:CDS | 55.0% | |
| GCAAACTAAGAGCTGCTGCC+AGG | + | chr7.3:6181717-6181736 | MS.gene22968:CDS | 55.0% | |
| GTCAGAGCTGCGTTTGTCTG+TGG | + | chr7.3:6179043-6179062 | MS.gene22968:intron | 55.0% | |
| TAAGGAGGCTTGGGGGAAGA+GGG | + | chr7.3:6181440-6181459 | MS.gene22968:intron | 55.0% | |
| TCCCCCAAGCCTCCTTATCT+TGG | - | chr7.3:6181437-6181456 | None:intergenic | 55.0% | |
| TTGGGGGAAGAGGGCTATTG+AGG | + | chr7.3:6181449-6181468 | MS.gene22968:intron | 55.0% | |
| !! | GCGTCAGGTTGGGGAATCAC+TGG | + | chr7.3:6178703-6178722 | MS.gene22968:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6178700 | 6181778 | 6178700 | ID=MS.gene22968 |
| chr7.3 | mRNA | 6178700 | 6181778 | 6178700 | ID=MS.gene22968.t1;Parent=MS.gene22968 |
| chr7.3 | exon | 6178700 | 6178849 | 6178700 | ID=MS.gene22968.t1.exon1;Parent=MS.gene22968.t1 |
| chr7.3 | CDS | 6178700 | 6178849 | 6178700 | ID=cds.MS.gene22968.t1;Parent=MS.gene22968.t1 |
| chr7.3 | exon | 6181680 | 6181778 | 6181680 | ID=MS.gene22968.t1.exon2;Parent=MS.gene22968.t1 |
| chr7.3 | CDS | 6181680 | 6181778 | 6181680 | ID=cds.MS.gene22968.t1;Parent=MS.gene22968.t1 |
| Gene Sequence |
| Protein sequence |
