AlfalfaGEDB | MS.gene22968

M. sativa cultivar XinJiangDaYe / MS.gene22968

KEGG: K03938
GO: -
PFAM: PF10200.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22968.t1	XP_024625354.1	100	82	0	0	1	82	1	82	1.40E-41	178.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22968.t1	O82238	84.1	82	13	0	1	82	36	117	2.0e-36	152.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22968.t1	G7KRW9	100.0	82	0	0	1	82	1	82	1.0e-41	178.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene22968	0.887547	1.30E-72	-1.69E-46
MS.gene049340	MS.gene22968	0.821861	3.22E-53	-1.69E-46
MS.gene049341	MS.gene22968	0.856102	4.04E-62	-1.69E-46
MS.gene049382	MS.gene22968	0.804576	2.02E-49	-1.69E-46
MS.gene049653	MS.gene22968	0.819288	1.26E-52	-1.69E-46
MS.gene049756	MS.gene22968	0.830269	3.23E-55	-1.69E-46
MS.gene049887	MS.gene22968	0.804082	2.56E-49	-1.69E-46
MS.gene050277	MS.gene22968	0.925831	1.08E-90	-1.69E-46
MS.gene050303	MS.gene22968	0.827419	1.58E-54	-1.69E-46
MS.gene050317	MS.gene22968	0.812423	4.27E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22968.t1	MTR_7g108810	100.000	82	0	0	1	82	1	82	5.96e-58	182
MS.gene22968.t1	MTR_8g058533	69.231	52	12	1	35	82	4	55	9.92e-18	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22968.t1	AT3G62790	84.146	82	13	0	1	82	1	82	1.11e-48	149
MS.gene22968.t1	AT2G47690	84.146	82	13	0	1	82	36	117	5.28e-48	148
MS.gene22968.t1	AT2G47690	73.913	69	13	1	1	69	36	99	4.42e-31	105
MS.gene22968.t1	AT2G47690	92.000	50	4	0	1	50	36	85	2.40e-30	102

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Find 25 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAACCGGATTTACAAGG+AGG	0.717521	7.3:+6181688	MS.gene22968:CDS
AAGGTACCTCTTTGGAATGG+TGG	0.557593	7.3:-6178834	None:intergenic
AAGGTCGTTGCTACGATTTC+TGG	0.156291	7.3:+6178731	MS.gene22968:CDS
ACGAAGAAACCGGATTTACA+AGG	0.549458	7.3:+6181685	MS.gene22968:CDS
ACGAAGGAGAACACAATCTT+TGG	0.275115	7.3:-6178791	None:intergenic
AGGGATTGAAGGTACCTCTT+TGG	0.327899	7.3:-6178842	None:intergenic
ATGCCTCCACCATTCCAAAG+AGG	0.652254	7.3:+6178828	MS.gene22968:CDS
ATTCGAAGTAATCTTCACGA+AGG	0.720124	7.3:-6178807	None:intergenic
CCAGGAAAGGTCAAGATGAC+GGG	0.551383	7.3:+6181735	MS.gene22968:CDS
CCCGTCATCTTGACCTTTCC+TGG	0.181566	7.3:-6181735	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGATATGGGACTCA+CGG	-	chr7.3:6179540-6179559	None:intergenic	30.0%
AAACAAATAGCTTGAGAAGA+AGG	-	chr7.3:6179489-6179508	None:intergenic	30.0%
AAATCTGATTGTGCTAATCA+TGG	-	chr7.3:6181350-6181369	None:intergenic	30.0%
AAGAAAGAAAAAGGGATTGA+AGG	-	chr7.3:6178856-6178875	None:intergenic	30.0%
AATCTACATCAACCTTGATT+TGG	+	chr7.3:6180055-6180074	MS.gene22968:intron	30.0%
AATCTGATTGTGCTAATCAT+GGG	-	chr7.3:6181349-6181368	None:intergenic	30.0%
AGTGAACTTGGAATTACAAT+GGG	+	chr7.3:6180114-6180133	MS.gene22968:intron	30.0%
ATATTATAGGAAGGGTTTCT+AGG	-	chr7.3:6181019-6181038	None:intergenic	30.0%
ATCTTACAATCAGGTACTTT+GGG	+	chr7.3:6180697-6180716	MS.gene22968:intron	30.0%
CAACCAATGAAAACAATACA+GGG	+	chr7.3:6179776-6179795	MS.gene22968:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	6178700	6181778	6178700	ID=MS.gene22968
chr7.3	mRNA	6178700	6181778	6178700	ID=MS.gene22968.t1;Parent=MS.gene22968
chr7.3	exon	6178700	6178849	6178700	ID=MS.gene22968.t1.exon1;Parent=MS.gene22968.t1
chr7.3	CDS	6178700	6178849	6178700	ID=cds.MS.gene22968.t1;Parent=MS.gene22968.t1
chr7.3	exon	6181680	6181778	6181680	ID=MS.gene22968.t1.exon2;Parent=MS.gene22968.t1
chr7.3	CDS	6181680	6181778	6181680	ID=cds.MS.gene22968.t1;Parent=MS.gene22968.t1

Gene Sequence

>MS.gene22968

ATGGCGTCAGGTTGGGGAATCACTGGTAACAAAGGTCGTTGCTACGATTTCTGGATCGATTTCAGCGAGTGCATGTCTACTTGTAGAGAACCCAAAGATTGTGTTCTCCTTCGTGAAGATTACTTCGAATGCCTCCACCATTCCAAAGAGGTACCTTCAATCCCTTTTTCTTTCTTTTACTTTTACCTTTTTTTTTTTTTTTTACAATTCATTCATCACTTTCAAATCCACTTGATTTCGTTTTTCAAAACCCTAATTTCGTGAAGATTAATGATCGATTCACTGCATTAGTCATACGAACCTCAATTTATCTTAGTTTGAGATCGTATTGACGATCCTTATCGTCAGAGCTGCGTTTGTCTGTGGTGAAGCGCACAGAAAGTTCCTTGTTGCCTCTGACTCGATGTCGATTATGGGTTATTGGGATGCAATGTATCGGGCCAACGTTCGGTCCCGAACAATGATTAAAGTTCGGGAACGACATTTCTGTATTCCCAAACCTTATTTTGTTTTACTGTGGCAAGATAATGAGCAGAAAGAAAATGAACAAAACAAAAATAAGAGAAAATGAAATTTTTTGTATATTGTTTAGATGGATAGAAAATGAAAAAAAAAAAAGTATATATGTTCTCTCCTGTTGTTTTGTTCGATGTAAAAGTGAAAAAAAGAAGAAATGTAAATGAATAATTGACGTGAAGTTCTTTTTTACCTTGATATGAGAAAAATCTAGTGCAGCCTGTATCACAGATGAGAAATAGTTAGAAAGGTATAATTGAAAAGAGGGTACCTTCTTCTCAAGCTATTTGTTTTCTCTCAATTTGAGGGGAGGAAACTTTTCCGTGAGTCCCATATCATTTTTTTTCATCCTTGTTTTTTCTCCACAGCACAATGGGAGAAAATTTTATATGCATTTCATTTCTCTCCTCTCAGCATCTCCCCTCGTATTTTCTGTTAATTAAATATAGAGTAAAGGTATATTTGAAAACTTTAATAGATTTTATTTTACGTTAAATCGTGAAATGTCTTCTCCCTGTAGCAATTATAGTTTAACCTACATTCAATTTCAGTCTATTAGTCAACCAATGAAAACAATACAGGGATTGTGCTGATGTCTAGGCACTTGTTAGTAAACAGGGGATGAGGTGGTAAAATGAACAAGCAAGCTCGAGAGCTTGGAAGAGATGAGAAATTCTCAATCAGAAAAATTGATACATGATGATGGTGGTCTATTTATAGAGCTTGTTAGATAATAACAATCAGTATTAACCAACCAACTGCCTAACCAAGTAACACATGTTAACAGACTTAACATCCTGTAGTGGGACTCTCATTTCTTATTTGCTTCTTTTCATTCTAATCTACATCAACCTTGATTTGGCGAGAGAGAGCATGATTGAATGGTCAACAGAATTACAGTGAACTTGGAATTACAATGGGACCTTAAATGTTTAATTTAACTATAGATTTTTTTAAGCTTCTTGAGTTCATGTCTTCTCTTAGCTTTCAAAACATATTTCTTGTATGATTCTCCAATAACTTACGGTCATGACACAGTTTAAGGATGTAAAGTCCTGTGGCTGCCAATAATATGGTGGTTAATTTATGGCATTTGGTTTTGTTTCATATGGCGCAGTTTGATTATGAGGTTATAATTTTTCATGTGGAAGTTGTTTTTTCTCGTTACGTTTATCTGGTTAAAGGTCTTTTAGCTTATTTTGTCATGCTCATCTTATAATCATCCTTTTAGCTTATTTTGTCATGCTGATTTTTCATGTGGGGTGTTTGACTCCAAATAGCTAGTCTACTCTATTGCATCCAAACATCTGCTGAAATATGAGTAGATTTTCATCCTTTTCAATCAACCACACATTACAAACATAATAGCTATTTAGTTGACAAAAATTGAGTTATGGAATATGACAACAGTCATATGGAAGTTGTTTTTTTCTTGTTACGTTTATCTGGTTAAAGGTCTTTTAGCTTATTTGGTCATGCTGATCTTACAATCAGGTACTTTGGGTACATTTTAGGCAATTCCTTTTTCTTCCTATAATTAAGTTATCAACTAATATTGCTCTGGGAGAAAACTGTAGATAATTTTATTGTATACTCTTAAGCTGCTTATTTTTTTGTTTTTAAAAGAACTCTTGTAGTTTTCCTTTCACCTCAATAGCCATGTAGTAGGAAAGAATGCTTTTGGTAGGGGCAAGTAAGGGGGTGAAACTTACCTGCTTGTTGGGGGAAACTAAAACATATGTGGGAAGTATTGAAAATGACTGGAGTATTTAACTTTGTTGCATAAAGAGCTTTGGATTACCTAGAAACCCTTCCTATAATATTTTATCCATGAAGTTTACTTTGGTGAGAAAAGTTTATTCTGGTACTCAAGTTCAGGCCTTAAAAGCAGTAGAGAATGTCATATATACTAATACTACCCATTGTGAATTAGCTTTTGGCAAATGGTAACTTCTTTTTATGTTTGTGGAGAAAATTAATGTGTATATATATATCAAGCCTTGTTTCAAATTCCTTCGAAAACTATATTACAGCACTAGTGCTTTTTATGCACCTTGGGGGAAAAGGCAAGTAAAACAAGACCTAAAGACTGGTTGATTTAAATATATGACTTTTTGTCTTGTATGATAGCCCATGATTAGCACAATCAGATTTGTGGCATGGGCAGTAGTCCTTGCGAGTAGAGTTTCTATTGAGCATTTAGATCACAGAAAGTTGACCAAGATAAGGAGGCTTGGGGGAAGAGGGCTATTGAGGAAAGAAAGAAACTGTTGGGTATTTTCTATTTGTAGATATTTTTATATCCGATAGAAAAAGTTGTTTTATGTTTTTTTAAGGGAAAGAGTTGTTTTATTGTTTATCAAGTAAATTTATATCACCCAGTGTTCCATATGTTAACAAATTATTGTATCTGTCAGTTTGATCGCCATATAAATGACTAATGTTGATTTGTTGCTTAATGCAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAACAACGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAAGATGACGGGAAAGTTGCTGAACATCATTAG

Protein sequence

>MS.gene22968.t1

MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCVLLREDYFECLHHSKEFQRRNRIYKEEQRKLRAAARKGQDDGKVAEHH