Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99313.t1 | AFK35454.1 | 68.6 | 118 | 37 | 0 | 59 | 176 | 1 | 118 | 3.40E-33 | 151.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99313.t1 | I3S5B2 | 68.6 | 118 | 37 | 0 | 59 | 176 | 1 | 118 | 2.5e-33 | 151.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene99313 | 0.812507 | 4.10E-51 | -1.69E-46 |
| MS.gene049255 | MS.gene99313 | 0.849041 | 4.17E-60 | -1.69E-46 |
| MS.gene049341 | MS.gene99313 | 0.841702 | 4.05E-58 | -1.69E-46 |
| MS.gene049382 | MS.gene99313 | 0.844581 | 6.92E-59 | -1.69E-46 |
| MS.gene049653 | MS.gene99313 | 0.818564 | 1.84E-52 | -1.69E-46 |
| MS.gene049703 | MS.gene99313 | -0.808393 | 3.17E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene99313 | 0.869065 | 4.09E-66 | -1.69E-46 |
| MS.gene04984 | MS.gene99313 | 0.810291 | 1.24E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene99313 | 0.888668 | 4.81E-73 | -1.69E-46 |
| MS.gene050303 | MS.gene99313 | 0.829864 | 4.06E-55 | -1.69E-46 |
| MS.gene050317 | MS.gene99313 | 0.812324 | 4.49E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene99313 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene99313 | -0.834967 | 2.21E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene99313 | 0.810596 | 1.07E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene99313 | 0.811681 | 6.20E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene99313 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene99313 | 0.836124 | 1.12E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene99313 | 0.855315 | 6.85E-62 | -1.69E-46 |
| MS.gene050838 | MS.gene99313 | 0.813503 | 2.48E-51 | -1.69E-46 |
| MS.gene050987 | MS.gene99313 | 0.804223 | 2.39E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene99313 | 0.828868 | 7.08E-55 | -1.69E-46 |
| MS.gene051088 | MS.gene99313 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene99313 | 0.806577 | 7.69E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene99313 | 0.869224 | 3.63E-66 | -1.69E-46 |
| MS.gene051245 | MS.gene99313 | 0.889552 | 2.19E-73 | -1.69E-46 |
| MS.gene051328 | MS.gene99313 | 0.838998 | 2.06E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene99313 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene051451 | MS.gene99313 | 0.833105 | 6.45E-56 | -1.69E-46 |
| MS.gene051577 | MS.gene99313 | 0.808846 | 2.53E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene99313 | 0.83662 | 8.41E-57 | -1.69E-46 |
| MS.gene051746 | MS.gene99313 | 0.832601 | 8.61E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene99313 | 0.834844 | 2.37E-56 | -1.69E-46 |
| MS.gene051757 | MS.gene99313 | 0.828127 | 1.07E-54 | -1.69E-46 |
| MS.gene051789 | MS.gene99313 | 0.834001 | 3.86E-56 | -1.69E-46 |
| MS.gene051903 | MS.gene99313 | 0.828761 | 7.51E-55 | -1.69E-46 |
| MS.gene052012 | MS.gene99313 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene99313 | 0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene99313 | 0.848373 | 6.39E-60 | -1.69E-46 |
| MS.gene052302 | MS.gene99313 | 0.851434 | 8.90E-61 | -1.69E-46 |
| MS.gene052309 | MS.gene99313 | -0.817422 | 3.33E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene99313 | 0.845589 | 3.70E-59 | -1.69E-46 |
| MS.gene052397 | MS.gene99313 | 0.802721 | 4.91E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene99313 | 0.829664 | 4.54E-55 | -1.69E-46 |
| MS.gene052856 | MS.gene99313 | 0.829282 | 5.62E-55 | -1.69E-46 |
| MS.gene052858 | MS.gene99313 | 0.826759 | 2.27E-54 | -1.69E-46 |
| MS.gene052860 | MS.gene99313 | 0.830756 | 2.45E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene99313 | 0.830745 | 2.47E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene99313 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene99313 | 0.813405 | 2.60E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene99313 | 0.811845 | 5.71E-51 | -1.69E-46 |
| MS.gene053080 | MS.gene99313 | 0.807867 | 4.10E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene99313 | 0.840296 | 9.47E-58 | -1.69E-46 |
| MS.gene053216 | MS.gene99313 | 0.833776 | 4.39E-56 | -1.69E-46 |
| MS.gene053437 | MS.gene99313 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene053590 | MS.gene99313 | 0.805429 | 1.34E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene99313 | 0.818901 | 1.54E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene99313 | 0.807853 | 4.13E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene99313 | 0.807734 | 4.37E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene99313 | 0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene99313 | 0.825583 | 4.33E-54 | -1.69E-46 |
| MS.gene055162 | MS.gene99313 | 0.83203 | 1.19E-55 | -1.69E-46 |
| MS.gene055174 | MS.gene99313 | 0.816007 | 6.90E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene99313 | 0.812924 | 3.32E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene99313 | 0.837444 | 5.18E-57 | -1.69E-46 |
| MS.gene055512 | MS.gene99313 | 0.811422 | 7.06E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene99313 | 0.800063 | 1.72E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene99313 | -0.831785 | 1.37E-55 | -1.69E-46 |
| MS.gene056432 | MS.gene99313 | 0.831374 | 1.73E-55 | -1.69E-46 |
| MS.gene056580 | MS.gene99313 | 0.840481 | 8.48E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene99313 | 0.810266 | 1.26E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene99313 | 0.858987 | 5.65E-63 | -1.69E-46 |
| MS.gene056760 | MS.gene99313 | 0.846967 | 1.56E-59 | -1.69E-46 |
| MS.gene057057 | MS.gene99313 | 0.871598 | 6.05E-67 | -1.69E-46 |
| MS.gene057060 | MS.gene99313 | 0.812923 | 3.32E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene99313 | 0.829424 | 5.19E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene99313 | 0.815186 | 1.05E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene99313 | 0.873027 | 2.02E-67 | -1.69E-46 |
| MS.gene057234 | MS.gene99313 | 0.869564 | 2.82E-66 | -1.69E-46 |
| MS.gene057451 | MS.gene99313 | -0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene057452 | MS.gene99313 | -0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene99313 | 0.80231 | 5.96E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene99313 | 0.831667 | 1.47E-55 | -1.69E-46 |
| MS.gene05795 | MS.gene99313 | 0.83127 | 1.84E-55 | -1.69E-46 |
| MS.gene058054 | MS.gene99313 | 0.826641 | 2.43E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene99313 | 0.86103 | 1.37E-63 | -1.69E-46 |
| MS.gene058084 | MS.gene99313 | 0.839068 | 1.98E-57 | -1.69E-46 |
| MS.gene058126 | MS.gene99313 | 0.813002 | 3.19E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene99313 | 0.853013 | 3.16E-61 | -1.69E-46 |
| MS.gene058238 | MS.gene99313 | 0.870314 | 1.60E-66 | -1.69E-46 |
| MS.gene058399 | MS.gene99313 | 0.820369 | 7.11E-53 | -1.69E-46 |
| MS.gene058646 | MS.gene99313 | 0.820103 | 8.19E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene99313 | 0.809886 | 1.52E-50 | -1.69E-46 |
| MS.gene058661 | MS.gene99313 | -0.81066 | 1.03E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene99313 | 0.884074 | 2.62E-71 | -1.69E-46 |
| MS.gene059249 | MS.gene99313 | 0.811943 | 5.44E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene99313 | 0.829231 | 5.78E-55 | -1.69E-46 |
| MS.gene059569 | MS.gene99313 | 0.827553 | 1.47E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene99313 | 0.825481 | 4.58E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene99313 | 0.81844 | 1.96E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene99313 | 0.838948 | 2.12E-57 | -1.69E-46 |
| MS.gene06001 | MS.gene99313 | 0.858212 | 9.62E-63 | -1.69E-46 |
| MS.gene060084 | MS.gene99313 | 0.815803 | 7.67E-52 | -1.69E-46 |
| MS.gene060165 | MS.gene99313 | 0.81599 | 6.96E-52 | -1.69E-46 |
| MS.gene060297 | MS.gene99313 | 0.836715 | 7.95E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene99313 | 0.821281 | 4.39E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene99313 | 0.823431 | 1.39E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene99313 | 0.824673 | 7.10E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene99313 | 0.818114 | 2.32E-52 | -1.69E-46 |
| MS.gene060907 | MS.gene99313 | 0.810524 | 1.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATGAAGGATTGTTTCTA+AGG | 0.251354 | 6.3:+10307783 | None:intergenic |
| TGTATCGAAGTTGGGCTTGC+TGG | 0.327795 | 6.3:+10307807 | None:intergenic |
| AGAGTCGGTGTAAGAGAGAT+TGG | 0.343423 | 6.3:+10306832 | None:intergenic |
| TCCAACGGTGTCCACAGTTT+GGG | 0.348103 | 6.3:-10307230 | MS.gene99313:CDS |
| TTCCAACGGTGTCCACAGTT+TGG | 0.352249 | 6.3:-10307231 | MS.gene99313:CDS |
| TTGAACGCAGCGAACGGCTT+TGG | 0.355771 | 6.3:-10307127 | MS.gene99313:CDS |
| CCTTCATTTCTTCGATGATA+AGG | 0.358076 | 6.3:-10307770 | MS.gene99313:intron |
| TCTGTTCTCTGTCTTCCTTA+AGG | 0.368606 | 6.3:-10306960 | MS.gene99313:CDS |
| GAGGGAAGAGAGTGTGAGTT+AGG | 0.376366 | 6.3:+10306870 | None:intergenic |
| TGAGCGCACTCAAGTGTTGC+AGG | 0.377539 | 6.3:+10307074 | None:intergenic |
| TGGTACTCATCTTGTCTTGT+TGG | 0.380839 | 6.3:-10306903 | MS.gene99313:CDS |
| TGAATCTCGAATGCGCCGTT+TGG | 0.398019 | 6.3:-10307908 | None:intergenic |
| CCTCGCCTCTGGCAGTTGCC+TGG | 0.401298 | 6.3:-10307176 | MS.gene99313:CDS |
| ACATTCACGGCAAAACTTCA+TGG | 0.409173 | 6.3:-10306923 | MS.gene99313:CDS |
| AGAAGTTATCAGCTGCCTTC+TGG | 0.416563 | 6.3:-10307017 | MS.gene99313:CDS |
| TCTAAGGGTGTATCGAAGTT+GGG | 0.431737 | 6.3:+10307799 | None:intergenic |
| CGTCATTCCGTCCTCGCCTC+TGG | 0.431810 | 6.3:-10307187 | MS.gene99313:CDS |
| TAACAACATTCTGTACCTTA+AGG | 0.438260 | 6.3:+10306945 | None:intergenic |
| TTCTAAGGGTGTATCGAAGT+TGG | 0.438874 | 6.3:+10307798 | None:intergenic |
| CCTTCTGGTGATCGCAATTA+CGG | 0.443863 | 6.3:-10307002 | MS.gene99313:CDS |
| AGATTGGAAAGGAGAGAAGT+GGG | 0.444912 | 6.3:+10306848 | None:intergenic |
| GTATCGAAGTTGGGCTTGCT+GGG | 0.471039 | 6.3:+10307808 | None:intergenic |
| CCTTATCATCGAAGAAATGA+AGG | 0.473594 | 6.3:+10307770 | None:intergenic |
| CGCTGCGTTCAATGCAATCA+TGG | 0.490943 | 6.3:+10307138 | None:intergenic |
| CGAAAATAACTGTTCTTCGA+TGG | 0.507553 | 6.3:-10307861 | MS.gene99313:CDS |
| CGCAATTACGGCAAGCGTAG+AGG | 0.511532 | 6.3:-10306990 | MS.gene99313:CDS |
| GAGATTGGAAAGGAGAGAAG+TGG | 0.517620 | 6.3:+10306847 | None:intergenic |
| ACAGAATGTTGTTACATTCA+CGG | 0.518581 | 6.3:-10306936 | MS.gene99313:CDS |
| GAGCACGTGCTTCAGTTTGA+CGG | 0.521354 | 6.3:+10307830 | None:intergenic |
| GCAACTGCCAGAGGCGAGGA+CGG | 0.521541 | 6.3:+10307180 | None:intergenic |
| TGGAAAGGAGAGAAGTGGGA+GGG | 0.552626 | 6.3:+10306852 | None:intergenic |
| GCTTTGGTGCGAGGAAGTGT+TGG | 0.554939 | 6.3:-10307111 | MS.gene99313:CDS |
| ACCCAAACTGTGGACACCGT+TGG | 0.558999 | 6.3:+10307229 | None:intergenic |
| CAGCGAACGGCTTTGGTGCG+AGG | 0.559451 | 6.3:-10307120 | MS.gene99313:CDS |
| CCAGGCAACTGCCAGAGGCG+AGG | 0.567483 | 6.3:+10307176 | None:intergenic |
| GAAAGTAGTTTAGTAAGAGT+CGG | 0.567570 | 6.3:+10306817 | None:intergenic |
| TTGGAAAGGAGAGAAGTGGG+AGG | 0.571142 | 6.3:+10306851 | None:intergenic |
| AAACAACGGATATCTCCAAA+CGG | 0.577476 | 6.3:+10307893 | None:intergenic |
| AAATGAAGGATTGTTTCTAA+GGG | 0.580437 | 6.3:+10307784 | None:intergenic |
| CGGTGTAAGAGAGATTGGAA+AGG | 0.583026 | 6.3:+10306837 | None:intergenic |
| ATTGCATTGAACGCAGCGAA+CGG | 0.596659 | 6.3:-10307133 | MS.gene99313:CDS |
| GTTTGCTGCAACCCAAACTG+TGG | 0.602356 | 6.3:+10307219 | None:intergenic |
| CCGTAATTGCGATCACCAGA+AGG | 0.604582 | 6.3:+10307002 | None:intergenic |
| TTTCGGATAAGGACAAACAA+CGG | 0.634830 | 6.3:+10307879 | None:intergenic |
| ACGAAACTCAGTCTTTCCAA+CGG | 0.689569 | 6.3:-10307245 | MS.gene99313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGATAGTATTTGTTTAA+AGG | + | chr6.3:10307150-10307169 | None:intergenic | 15.0% |
| !! | TATTAAAAATCAAGTGATGT+GGG | + | chr6.3:10307369-10307388 | None:intergenic | 20.0% |
| !! | TTATTAAAAATCAAGTGATG+TGG | + | chr6.3:10307370-10307389 | None:intergenic | 20.0% |
| !!! | AATTATAGCCTTAAAAACAT+AGG | - | chr6.3:10307012-10307031 | MS.gene99313:CDS | 20.0% |
| ! | ATTAAAAATCAAGTGATGTG+GGG | + | chr6.3:10307368-10307387 | None:intergenic | 25.0% |
| !!! | AAATGAAGGATTGTTTCTAA+GGG | + | chr6.3:10306943-10306962 | None:intergenic | 25.0% |
| ACAGAATGTTGTTACATTCA+CGG | - | chr6.3:10307788-10307807 | MS.gene99313:CDS | 30.0% | |
| GTTGTCGATCAAATGATTAA+TGG | + | chr6.3:10307290-10307309 | None:intergenic | 30.0% | |
| TAACAAACCAAGGAAATTCA+GGG | - | chr6.3:10307222-10307241 | MS.gene99313:CDS | 30.0% | |
| TAACAACATTCTGTACCTTA+AGG | + | chr6.3:10307782-10307801 | None:intergenic | 30.0% | |
| TCTCTAATCTGTGTTAAAAC+AGG | - | chr6.3:10307338-10307357 | MS.gene99313:intron | 30.0% | |
| TTAACAAACCAAGGAAATTC+AGG | - | chr6.3:10307221-10307240 | MS.gene99313:CDS | 30.0% | |
| !! | ACTGTTAGCCTATGTTTTTA+AGG | + | chr6.3:10307023-10307042 | None:intergenic | 30.0% |
| !! | AGAACAGTTATTTTCGGATA+AGG | + | chr6.3:10306859-10306878 | None:intergenic | 30.0% |
| !! | CATCGAAGAACAGTTATTTT+CGG | + | chr6.3:10306865-10306884 | None:intergenic | 30.0% |
| !! | GAAATGAAGGATTGTTTCTA+AGG | + | chr6.3:10306944-10306963 | None:intergenic | 30.0% |
| AAACAACGGATATCTCCAAA+CGG | + | chr6.3:10306834-10306853 | None:intergenic | 35.0% | |
| CCTTATCATCGAAGAAATGA+AGG | + | chr6.3:10306957-10306976 | None:intergenic | 35.0% | |
| CCTTCATTTCTTCGATGATA+AGG | - | chr6.3:10306954-10306973 | MS.gene99313:CDS | 35.0% | |
| CGAAAATAACTGTTCTTCGA+TGG | - | chr6.3:10306863-10306882 | MS.gene99313:CDS | 35.0% | |
| CTTAAAGCGCAACACAAAAA+TGG | - | chr6.3:10307165-10307184 | MS.gene99313:CDS | 35.0% | |
| GAGGAAATGTGGAATCAAAA+TGG | + | chr6.3:10307191-10307210 | None:intergenic | 35.0% | |
| GTAGTGTTAAATGCAGTCAA+AGG | + | chr6.3:10306988-10307007 | None:intergenic | 35.0% | |
| TCGACAACTACAGTTAAAAC+AGG | - | chr6.3:10307302-10307321 | MS.gene99313:intron | 35.0% | |
| TTTCGGATAAGGACAAACAA+CGG | + | chr6.3:10306848-10306867 | None:intergenic | 35.0% | |
| ! | AAGGTTCAACTCAACTTTTG+GGG | + | chr6.3:10307446-10307465 | None:intergenic | 35.0% |
| ! | CAAGGTTCAACTCAACTTTT+GGG | + | chr6.3:10307447-10307466 | None:intergenic | 35.0% |
| ! | TCAAGGTTCAACTCAACTTT+TGG | + | chr6.3:10307448-10307467 | None:intergenic | 35.0% |
| ! | TGGCGTGCTGAAATTTTATA+TGG | + | chr6.3:10307252-10307271 | None:intergenic | 35.0% |
| !! | AGTTGAGTTGAACCTTGATT+TGG | - | chr6.3:10307450-10307469 | MS.gene99313:intron | 35.0% |
| !! | GTTGAGTTGAACCTTGATTT+GGG | - | chr6.3:10307451-10307470 | MS.gene99313:intron | 35.0% |
| !! | TCCTTGGTTTGTTAACTTGA+GGG | + | chr6.3:10307216-10307235 | None:intergenic | 35.0% |
| !! | TTCCTTGGTTTGTTAACTTG+AGG | + | chr6.3:10307217-10307236 | None:intergenic | 35.0% |
| ACATTCACGGCAAAACTTCA+TGG | - | chr6.3:10307801-10307820 | MS.gene99313:CDS | 40.0% | |
| ACGAAACTCAGTCTTTCCAA+CGG | - | chr6.3:10307479-10307498 | MS.gene99313:intron | 40.0% | |
| AGATTGGAAAGGAGAGAAGT+GGG | + | chr6.3:10307879-10307898 | None:intergenic | 40.0% | |
| CTCATTATGTTCTCCACTCT+AGG | + | chr6.3:10307412-10307431 | None:intergenic | 40.0% | |
| CTTTCTCTTCTATCCTAGAG+TGG | - | chr6.3:10307396-10307415 | MS.gene99313:intron | 40.0% | |
| TCCCTCAAGTTAACAAACCA+AGG | - | chr6.3:10307212-10307231 | MS.gene99313:CDS | 40.0% | |
| TCTGTTCTCTGTCTTCCTTA+AGG | - | chr6.3:10307764-10307783 | MS.gene99313:intron | 40.0% | |
| TGGTACTCATCTTGTCTTGT+TGG | - | chr6.3:10307821-10307840 | MS.gene99313:CDS | 40.0% | |
| ! | AGGTTCAACTCAACTTTTGG+GGG | + | chr6.3:10307445-10307464 | None:intergenic | 40.0% |
| ! | GATTAATGGACAATCCTTGC+AGG | + | chr6.3:10307276-10307295 | None:intergenic | 40.0% |
| ! | GTTTGTTAACTTGAGGGATG+AGG | + | chr6.3:10307210-10307229 | None:intergenic | 40.0% |
| ! | TCTAAGGGTGTATCGAAGTT+GGG | + | chr6.3:10306928-10306947 | None:intergenic | 40.0% |
| ! | TTCTAAGGGTGTATCGAAGT+TGG | + | chr6.3:10306929-10306948 | None:intergenic | 40.0% |
| AATGGACAATCCTTGCAGGT+TGG | + | chr6.3:10307272-10307291 | None:intergenic | 45.0% | |
| ACTTGAGGGATGAGGAAATG+TGG | + | chr6.3:10307202-10307221 | None:intergenic | 45.0% | |
| AGAAGTTATCAGCTGCCTTC+TGG | - | chr6.3:10307707-10307726 | MS.gene99313:intron | 45.0% | |
| AGAGTCGGTGTAAGAGAGAT+TGG | + | chr6.3:10307895-10307914 | None:intergenic | 45.0% | |
| ATTGCATTGAACGCAGCGAA+CGG | - | chr6.3:10307591-10307610 | MS.gene99313:intron | 45.0% | |
| CCTTCTGGTGATCGCAATTA+CGG | - | chr6.3:10307722-10307741 | MS.gene99313:intron | 45.0% | |
| CGGTGTAAGAGAGATTGGAA+AGG | + | chr6.3:10307890-10307909 | None:intergenic | 45.0% | |
| GAGATTGGAAAGGAGAGAAG+TGG | + | chr6.3:10307880-10307899 | None:intergenic | 45.0% | |
| TGGATCACCCTGAATTTCCT+TGG | + | chr6.3:10307232-10307251 | None:intergenic | 45.0% | |
| ! | TGGTGAAGCTGTGTTTTTCC+AGG | + | chr6.3:10307569-10307588 | None:intergenic | 45.0% |
| !! | AGTTGAACCTTGATTTGGGC+AGG | - | chr6.3:10307455-10307474 | MS.gene99313:intron | 45.0% |
| CCGTAATTGCGATCACCAGA+AGG | + | chr6.3:10307725-10307744 | None:intergenic | 50.0% | |
| CGCTGCGTTCAATGCAATCA+TGG | + | chr6.3:10307589-10307608 | None:intergenic | 50.0% | |
| GAGCACGTGCTTCAGTTTGA+CGG | + | chr6.3:10306897-10306916 | None:intergenic | 50.0% | |
| TCCAACGGTGTCCACAGTTT+GGG | - | chr6.3:10307494-10307513 | MS.gene99313:intron | 50.0% | |
| TGGAAAGGAGAGAAGTGGGA+GGG | + | chr6.3:10307875-10307894 | None:intergenic | 50.0% | |
| TGTATCGAAGTTGGGCTTGC+TGG | + | chr6.3:10306920-10306939 | None:intergenic | 50.0% | |
| TTCCAACGGTGTCCACAGTT+TGG | - | chr6.3:10307493-10307512 | MS.gene99313:intron | 50.0% | |
| TTGGAAAGGAGAGAAGTGGG+AGG | + | chr6.3:10307876-10307895 | None:intergenic | 50.0% | |
| TTTCGTGCCTGCCCAAATCA+AGG | + | chr6.3:10307465-10307484 | None:intergenic | 50.0% | |
| ! | GAGGGAAGAGAGTGTGAGTT+AGG | + | chr6.3:10307857-10307876 | None:intergenic | 50.0% |
| ! | GTATCGAAGTTGGGCTTGCT+GGG | + | chr6.3:10306919-10306938 | None:intergenic | 50.0% |
| ! | GTTTGCTGCAACCCAAACTG+TGG | + | chr6.3:10307508-10307527 | None:intergenic | 50.0% |
| ! | TTTTTCCAGGCAACTGCCAG+AGG | + | chr6.3:10307556-10307575 | None:intergenic | 50.0% |
| ACCCAAACTGTGGACACCGT+TGG | + | chr6.3:10307498-10307517 | None:intergenic | 55.0% | |
| CGCAATTACGGCAAGCGTAG+AGG | - | chr6.3:10307734-10307753 | MS.gene99313:intron | 55.0% | |
| TTGAACGCAGCGAACGGCTT+TGG | - | chr6.3:10307597-10307616 | MS.gene99313:intron | 55.0% | |
| TTTCAGCACGCCAACCTGCA+AGG | - | chr6.3:10307259-10307278 | MS.gene99313:intron | 55.0% | |
| ! | GCTTTGGTGCGAGGAAGTGT+TGG | - | chr6.3:10307613-10307632 | MS.gene99313:intron | 55.0% |
| ! | TGAGCGCACTCAAGTGTTGC+AGG | + | chr6.3:10307653-10307672 | None:intergenic | 55.0% |
| CGTCATTCCGTCCTCGCCTC+TGG | - | chr6.3:10307537-10307556 | MS.gene99313:intron | 65.0% | |
| GCAACTGCCAGAGGCGAGGA+CGG | + | chr6.3:10307547-10307566 | None:intergenic | 65.0% | |
| ! | CAGCGAACGGCTTTGGTGCG+AGG | - | chr6.3:10307604-10307623 | MS.gene99313:intron | 65.0% |
| CCAGGCAACTGCCAGAGGCG+AGG | + | chr6.3:10307551-10307570 | None:intergenic | 70.0% | |
| CCTCGCCTCTGGCAGTTGCC+TGG | - | chr6.3:10307548-10307567 | MS.gene99313:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 10306826 | 10307920 | 10306826 | ID=MS.gene99313 |
| chr6.3 | mRNA | 10306826 | 10307920 | 10306826 | ID=MS.gene99313.t1;Parent=MS.gene99313 |
| chr6.3 | exon | 10307771 | 10307920 | 10307771 | ID=MS.gene99313.t1.exon1;Parent=MS.gene99313.t1 |
| chr6.3 | CDS | 10307771 | 10307920 | 10307771 | ID=cds.MS.gene99313.t1;Parent=MS.gene99313.t1 |
| chr6.3 | exon | 10306826 | 10307269 | 10306826 | ID=MS.gene99313.t1.exon2;Parent=MS.gene99313.t1 |
| chr6.3 | CDS | 10306826 | 10307269 | 10306826 | ID=cds.MS.gene99313.t1;Parent=MS.gene99313.t1 |
| Gene Sequence |
| Protein sequence |
