Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55988.t1 | XP_003594731.1 | 100 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 3.20E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55988.t1 | Q9NX55 | 37.0 | 81 | 51 | 0 | 25 | 105 | 44 | 124 | 3.1e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55988.t1 | A2Q2W3 | 100.0 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 2.3e-49 | 204.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene55988 | 0.842663 | 2.25E-58 | -1.69E-46 |
| MS.gene049340 | MS.gene55988 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene049341 | MS.gene55988 | 0.829996 | 3.77E-55 | -1.69E-46 |
| MS.gene049756 | MS.gene55988 | 0.808181 | 3.51E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene55988 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene55988 | 0.874292 | 7.57E-68 | -1.69E-46 |
| MS.gene050303 | MS.gene55988 | 0.840381 | 9.00E-58 | -1.69E-46 |
| MS.gene050437 | MS.gene55988 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene55988 | 0.802161 | 6.40E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene55988 | 0.802279 | 6.05E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene55988 | 0.804403 | 2.20E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene55988 | 0.827894 | 1.22E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene55988 | 0.825202 | 5.33E-54 | -1.69E-46 |
| MS.gene051088 | MS.gene55988 | 0.80871 | 2.71E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene55988 | 0.808151 | 3.57E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene55988 | 0.820388 | 7.04E-53 | -1.69E-46 |
| MS.gene051245 | MS.gene55988 | 0.813834 | 2.09E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene55988 | 0.833316 | 5.72E-56 | -1.69E-46 |
| MS.gene051330 | MS.gene55988 | 0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene051349 | MS.gene55988 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene05134 | MS.gene55988 | 0.832338 | 1.00E-55 | -1.69E-46 |
| MS.gene051626 | MS.gene55988 | 0.805701 | 1.18E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene55988 | 0.807873 | 4.09E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene55988 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene55988 | 0.818892 | 1.55E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene55988 | 0.817141 | 3.85E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene55988 | 0.805701 | 1.18E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene55988 | 0.836379 | 9.69E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene55988 | 0.818819 | 1.61E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene55988 | 0.822304 | 2.54E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene55988 | 0.805095 | 1.58E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene55988 | 0.824863 | 6.41E-54 | -1.69E-46 |
| MS.gene052860 | MS.gene55988 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene55988 | 0.828752 | 7.55E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene55988 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene55988 | 0.801006 | 1.10E-48 | -1.69E-46 |
| MS.gene053563 | MS.gene55988 | 0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene55988 | 0.808255 | 3.39E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene55988 | 0.811654 | 6.28E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene55988 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene55988 | 0.805242 | 1.47E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene55988 | 0.840707 | 7.39E-58 | -1.69E-46 |
| MS.gene055623 | MS.gene55988 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene55988 | 0.813571 | 2.39E-51 | -1.69E-46 |
| MS.gene056580 | MS.gene55988 | 0.807198 | 5.68E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene55988 | 0.818842 | 1.59E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene55988 | 0.863846 | 1.86E-64 | -1.69E-46 |
| MS.gene056760 | MS.gene55988 | 0.873268 | 1.68E-67 | -1.69E-46 |
| MS.gene057057 | MS.gene55988 | 0.839072 | 1.97E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene55988 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene55988 | 0.837668 | 4.54E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene55988 | 0.840304 | 9.43E-58 | -1.69E-46 |
| MS.gene057693 | MS.gene55988 | 0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene55988 | 0.817778 | 2.76E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene55988 | 0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene55988 | 0.815782 | 7.75E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene55988 | 0.803654 | 3.14E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene55988 | 0.877184 | 7.70E-69 | -1.69E-46 |
| MS.gene058906 | MS.gene55988 | 0.866862 | 2.09E-65 | -1.69E-46 |
| MS.gene058982 | MS.gene55988 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene55988 | 0.834139 | 3.56E-56 | -1.69E-46 |
| MS.gene059569 | MS.gene55988 | 0.814834 | 1.26E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene55988 | 0.810135 | 1.34E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene55988 | 0.811803 | 5.83E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene55988 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene55988 | 0.851683 | 7.57E-61 | -1.69E-46 |
| MS.gene060165 | MS.gene55988 | 0.800854 | 1.19E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene55988 | 0.824619 | 7.32E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene55988 | 0.813874 | 2.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55988.t1 | MTR_2g034010 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 1.88e-74 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55988.t1 | AT3G06610 | 80.000 | 110 | 21 | 1 | 1 | 109 | 1 | 110 | 2.24e-56 | 170 |
Find 18 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAACAGTTGGACAAAA+AGG | 0.270788 | 2.3:-56676353 | MS.gene55988:intron |
| ACTCTGCTGTTGCATGTCTT+TGG | 0.288649 | 2.3:+56679366 | None:intergenic |
| CTGCTTCTGCTGAAGCTGAT+TGG | 0.380996 | 2.3:-56679261 | MS.gene55988:CDS |
| TGGAGACGAAGGAGTGGAGA+TGG | 0.452107 | 2.3:-56679398 | MS.gene55988:CDS |
| ATTGGAATGCTATGCGTTTG+AGG | 0.478356 | 2.3:-56679243 | MS.gene55988:intron |
| AGGACCTTGCGTGAGCATAA+AGG | 0.482732 | 2.3:-56676322 | MS.gene55988:CDS |
| AGCTTCAGCAGAAGCAGCAA+TGG | 0.492964 | 2.3:+56679267 | None:intergenic |
| GGAGGGTGGAGACGAAGGAG+TGG | 0.517925 | 2.3:-56679404 | MS.gene55988:CDS |
| AGAAGCAGCAATGGAAGCCA+TGG | 0.542542 | 2.3:+56679276 | None:intergenic |
| AACTCGTGTTCAAGAAGCCA+TGG | 0.561938 | 2.3:-56679293 | MS.gene55988:CDS |
| GCGGTCAGTGAGTTTATCGA+AGG | 0.611692 | 2.3:+56679339 | None:intergenic |
| AGACGAAGGAGTGGAGATGG+TGG | 0.620347 | 2.3:-56679395 | MS.gene55988:CDS |
| AAAATGGAGGGTGGAGACGA+AGG | 0.628134 | 2.3:-56679409 | MS.gene55988:CDS |
| GAACACGAGTTGAATCAAGC+TGG | 0.629690 | 2.3:+56679305 | None:intergenic |
| TATAATTGCAAACGAACTAG+AGG | 0.633062 | 2.3:-56676450 | MS.gene55988:intron |
| CTAGTGAAGCAAATGACGAA+TGG | 0.649500 | 2.3:+56676285 | None:intergenic |
| ATCACCTTTATGCTCACGCA+AGG | 0.659657 | 2.3:+56676318 | None:intergenic |
| CAAGCTGGCGATCTTCAACG+CGG | 0.793472 | 2.3:+56679320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCTTAAAACATATTA+TGG | - | chr2.3:56677095-56677114 | MS.gene55988:intron | 10.0% |
| !! | TATATTATATACCAAAATAT+AGG | + | chr2.3:56676940-56676959 | None:intergenic | 10.0% |
| !!! | AAATTGTTAATTTTGAATTT+TGG | - | chr2.3:56678496-56678515 | MS.gene55988:intron | 10.0% |
| !!! | AATTGTTAATTTTGAATTTT+GGG | - | chr2.3:56678497-56678516 | MS.gene55988:intron | 10.0% |
| !! | AAATATCAAAAAAAGAACAA+AGG | + | chr2.3:56678845-56678864 | None:intergenic | 15.0% |
| !!! | AAAGTTTAATTTTTTCTGTA+TGG | - | chr2.3:56676649-56676668 | MS.gene55988:intron | 15.0% |
| !!! | AAATTGCTAATTTTTGAATT+TGG | - | chr2.3:56677820-56677839 | MS.gene55988:intron | 15.0% |
| !!! | AAGTTTAATTTTTTCTGTAT+GGG | - | chr2.3:56676650-56676669 | MS.gene55988:intron | 15.0% |
| !!! | AATTGCTAATTTTTGAATTT+GGG | - | chr2.3:56677821-56677840 | MS.gene55988:intron | 15.0% |
| !!! | AGTTCTTAAATTTTAATGTT+AGG | - | chr2.3:56678721-56678740 | MS.gene55988:intron | 15.0% |
| !!! | TTAAATTTTAATGTTAGGTT+TGG | - | chr2.3:56678726-56678745 | MS.gene55988:intron | 15.0% |
| !! | AAAAACTATAGATCAAACTA+TGG | - | chr2.3:56677688-56677707 | MS.gene55988:intron | 20.0% |
| !! | ATTATATGTTGTATTACTAG+TGG | - | chr2.3:56678982-56679001 | MS.gene55988:intron | 20.0% |
| !! | TAATCAATGAATCTAAAAAG+TGG | + | chr2.3:56676903-56676922 | None:intergenic | 20.0% |
| !! | TATAATACCAGAACATAAAA+AGG | + | chr2.3:56678968-56678987 | None:intergenic | 20.0% |
| !! | TCAAAATCTATTTGCAAAAA+AGG | + | chr2.3:56677797-56677816 | None:intergenic | 20.0% |
| !!! | AACTTAATGATGGAAATTAT+AGG | - | chr2.3:56677255-56677274 | MS.gene55988:intron | 20.0% |
| !!! | AGAAAAGTATGTTAATTGAT+TGG | + | chr2.3:56679318-56679337 | None:intergenic | 20.0% |
| !!! | ATGTATTTTGATTGAATCAT+AGG | - | chr2.3:56679174-56679193 | MS.gene55988:intron | 20.0% |
| !!! | ATTGATTCATTTTTTCTTTG+TGG | - | chr2.3:56676486-56676505 | MS.gene55988:CDS | 20.0% |
| !!! | ATTGCTAATTTTTGAATTTG+GGG | - | chr2.3:56677822-56677841 | MS.gene55988:intron | 20.0% |
| !!! | GTAAATTTCTAGATAGATTT+CGG | + | chr2.3:56679288-56679307 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTATATAACAGT+TGG | - | chr2.3:56679329-56679348 | MS.gene55988:CDS | 20.0% |
| !!! | TATTCCTATTTTTTCTTTGT+AGG | + | chr2.3:56678165-56678184 | None:intergenic | 20.0% |
| !!! | TCATATGTTCAACATTTTAA+TGG | + | chr2.3:56678621-56678640 | None:intergenic | 20.0% |
| !!! | TGTATTTTGATTGAATCATA+GGG | - | chr2.3:56679175-56679194 | MS.gene55988:intron | 20.0% |
| !!! | TTGATTCATTTTTTCTTTGT+GGG | - | chr2.3:56676487-56676506 | MS.gene55988:CDS | 20.0% |
| ! | AAAGATGATGAAAGATCATT+AGG | - | chr2.3:56677863-56677882 | MS.gene55988:intron | 25.0% |
| ! | AAATCTATTTGCAAAAAAGG+TGG | + | chr2.3:56677794-56677813 | None:intergenic | 25.0% |
| ! | AATCTATTTGCAAAAAAGGT+GGG | + | chr2.3:56677793-56677812 | None:intergenic | 25.0% |
| ! | ACAATACTTGTAATATTGCA+TGG | - | chr2.3:56678071-56678090 | MS.gene55988:intron | 25.0% |
| ! | ACATAAGTAGTAAGAAATAG+AGG | - | chr2.3:56677656-56677675 | MS.gene55988:intron | 25.0% |
| ! | ACCTAAGTACAATAAGTATA+TGG | - | chr2.3:56677221-56677240 | MS.gene55988:intron | 25.0% |
| ! | ATAGAGATTTCGAAGTAAAT+AGG | - | chr2.3:56678367-56678386 | MS.gene55988:intron | 25.0% |
| ! | ATGCAATTCTAACTTAATGA+TGG | - | chr2.3:56677245-56677264 | MS.gene55988:intron | 25.0% |
| ! | ATTTCTATACATAACTTCAG+GGG | + | chr2.3:56679083-56679102 | None:intergenic | 25.0% |
| ! | CATAAGTAGTAAGAAATAGA+GGG | - | chr2.3:56677657-56677676 | MS.gene55988:intron | 25.0% |
| ! | GATTTCTATACATAACTTCA+GGG | + | chr2.3:56679084-56679103 | None:intergenic | 25.0% |
| ! | TAAAGATGCGAATCTTATAT+TGG | - | chr2.3:56678132-56678151 | MS.gene55988:intron | 25.0% |
| ! | TACTTAGGTTCTATTTGAAT+TGG | + | chr2.3:56677210-56677229 | None:intergenic | 25.0% |
| ! | TATATAACAGTTGGACAAAA+AGG | - | chr2.3:56679338-56679357 | MS.gene55988:CDS | 25.0% |
| ! | TATTCAATGAACCTAAAATG+TGG | - | chr2.3:56676976-56676995 | MS.gene55988:intron | 25.0% |
| ! | TATTTACTTCGAAATCTCTA+TGG | + | chr2.3:56678368-56678387 | None:intergenic | 25.0% |
| ! | TCCATATACTTATTGTACTT+AGG | + | chr2.3:56677225-56677244 | None:intergenic | 25.0% |
| ! | TGATTTCTATACATAACTTC+AGG | + | chr2.3:56679085-56679104 | None:intergenic | 25.0% |
| ! | TTAATGACTCTATAAACAAG+TGG | - | chr2.3:56676707-56676726 | MS.gene55988:intron | 25.0% |
| ! | TTTAGTTATTGGGAATTAGA+GGG | - | chr2.3:56676557-56676576 | MS.gene55988:intron | 25.0% |
| !! | AGATTATTTTCATAAGCTCT+TGG | + | chr2.3:56677083-56677102 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr2.3:56676838-56676857 | None:intergenic | 25.0% |
| !! | CATTGATTAACATCAATATC+TGG | - | chr2.3:56676914-56676933 | MS.gene55988:intron | 25.0% |
| !! | CTATTTCTTACTACTTATGT+AGG | + | chr2.3:56677656-56677675 | None:intergenic | 25.0% |
| !! | GTTTGATCTATAGTTTTTCT+TGG | + | chr2.3:56677686-56677705 | None:intergenic | 25.0% |
| !! | TCTAACATGTTTTCTACAAT+AGG | + | chr2.3:56678221-56678240 | None:intergenic | 25.0% |
| !! | TCTGAAATTTCTAAAAGCAT+AGG | - | chr2.3:56678814-56678833 | MS.gene55988:intron | 25.0% |
| !! | TTGCTAATTTTTGAATTTGG+GGG | - | chr2.3:56677823-56677842 | MS.gene55988:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+AGG | + | chr2.3:56676879-56676898 | None:intergenic | 25.0% |
| !!! | AACCTAAAATGTGGTTTTTT+AGG | - | chr2.3:56676985-56677004 | MS.gene55988:intron | 25.0% |
| !!! | AGAATGAGGTTTTTAGTTAT+TGG | - | chr2.3:56676546-56676565 | MS.gene55988:intron | 25.0% |
| !!! | CATATCGATTTTAAGTTAGA+TGG | - | chr2.3:56676751-56676770 | MS.gene55988:intron | 25.0% |
| !!! | GAATGAGGTTTTTAGTTATT+GGG | - | chr2.3:56676547-56676566 | MS.gene55988:intron | 25.0% |
| !!! | TAAAATGTGGTTTTTTAGGT+GGG | - | chr2.3:56676989-56677008 | MS.gene55988:intron | 25.0% |
| !!! | TAAATACTCAAGTTGAAAAC+TGG | + | chr2.3:56678793-56678812 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATTGGGAATTAG+AGG | - | chr2.3:56676556-56676575 | MS.gene55988:intron | 25.0% |
| AAATGTTGAACATATGAAGC+AGG | - | chr2.3:56678624-56678643 | MS.gene55988:intron | 30.0% | |
| AACTTTACTGCACAACTATA+AGG | - | chr2.3:56677423-56677442 | MS.gene55988:intron | 30.0% | |
| AATGTTGAACATATGAAGCA+GGG | - | chr2.3:56678625-56678644 | MS.gene55988:intron | 30.0% | |
| AATTTAAGAACTTTGTCTCG+AGG | + | chr2.3:56678713-56678732 | None:intergenic | 30.0% | |
| ACATGTTAGAGTTTCATCTT+AGG | - | chr2.3:56678231-56678250 | MS.gene55988:intron | 30.0% | |
| ATAGAGGAAGTCAATATTGT+AGG | - | chr2.3:56678337-56678356 | MS.gene55988:intron | 30.0% | |
| ATCAAACTATGGTGATTTAG+AGG | - | chr2.3:56677699-56677718 | MS.gene55988:intron | 30.0% | |
| ATCTATTTGCAAAAAAGGTG+GGG | + | chr2.3:56677792-56677811 | None:intergenic | 30.0% | |
| ATGCGAATCTTATATTGGAT+TGG | - | chr2.3:56678137-56678156 | MS.gene55988:intron | 30.0% | |
| CGAAGTAAATAGGTTATCTT+CGG | - | chr2.3:56678377-56678396 | MS.gene55988:intron | 30.0% | |
| CTTCATCCAAAGTTATGAAA+AGG | - | chr2.3:56677320-56677339 | MS.gene55988:intron | 30.0% | |
| GTTCATCATTACAATGCAAA+GGG | + | chr2.3:56678946-56678965 | None:intergenic | 30.0% | |
| GTTGAAATTTACCAGTGTTT+GGG | - | chr2.3:56678647-56678666 | MS.gene55988:intron | 30.0% | |
| TAGAGGAAGATGTAAACAAT+AGG | - | chr2.3:56677343-56677362 | MS.gene55988:intron | 30.0% | |
| TATAATTGCAAACGAACTAG+AGG | - | chr2.3:56679241-56679260 | MS.gene55988:intron | 30.0% | |
| TATTGCATGGAATTGAATGT+TGG | - | chr2.3:56678084-56678103 | MS.gene55988:intron | 30.0% | |
| TCAATGATTAGAGAGAGATA+GGG | - | chr2.3:56678190-56678209 | MS.gene55988:intron | 30.0% | |
| TGAGTAATGAATAAGTTGCT+CGG | - | chr2.3:56677912-56677931 | MS.gene55988:intron | 30.0% | |
| TGGTGTCTACAAAGAAAAAT+AGG | - | chr2.3:56677539-56677558 | MS.gene55988:intron | 30.0% | |
| TTAGTTATTGGGAATTAGAG+GGG | - | chr2.3:56676558-56676577 | MS.gene55988:intron | 30.0% | |
| TTATCTTTGAACTTGATGCA+TGG | - | chr2.3:56677730-56677749 | MS.gene55988:intron | 30.0% | |
| TTCAATGATTAGAGAGAGAT+AGG | - | chr2.3:56678189-56678208 | MS.gene55988:intron | 30.0% | |
| TTTACAAATACAGCCAAAAC+AGG | + | chr2.3:56679124-56679143 | None:intergenic | 30.0% | |
| ! | AAAACCCTTTTCCATTAGAT+GGG | + | chr2.3:56678453-56678472 | None:intergenic | 30.0% |
| ! | CACCTAAAAAACCACATTTT+AGG | + | chr2.3:56676990-56677009 | None:intergenic | 30.0% |
| ! | CTTTTCATAACTTTGGATGA+AGG | + | chr2.3:56677322-56677341 | None:intergenic | 30.0% |
| ! | GAAATTTCTAAAAGCATAGG+AGG | - | chr2.3:56678817-56678836 | MS.gene55988:intron | 30.0% |
| ! | GTTCTTCTGTGTGAAAATTT+TGG | - | chr2.3:56676523-56676542 | MS.gene55988:intron | 30.0% |
| ! | TCAATATCTGGCCTATATTT+TGG | - | chr2.3:56676926-56676945 | MS.gene55988:intron | 30.0% |
| ! | TGATGAACCTTTTTATGTTC+TGG | - | chr2.3:56678958-56678977 | MS.gene55988:intron | 30.0% |
| ! | TGCTATGTTTTCTACAATGA+GGG | + | chr2.3:56677595-56677614 | None:intergenic | 30.0% |
| !! | AAGTACTTGTTTAGTTCTGA+AGG | - | chr2.3:56679012-56679031 | MS.gene55988:intron | 30.0% |
| !! | AATTTTCCTTCAGGTTTGAA+TGG | + | chr2.3:56678039-56678058 | None:intergenic | 30.0% |
| !! | TGTGAAAATTTTGGAGAATG+AGG | - | chr2.3:56676532-56676551 | MS.gene55988:intron | 30.0% |
| !!! | ATTTTGGGATTACTTACACA+AGG | - | chr2.3:56678512-56678531 | MS.gene55988:intron | 30.0% |
| !!! | CGATTTTAAGTTAGATGGTT+GGG | - | chr2.3:56676756-56676775 | MS.gene55988:intron | 30.0% |
| !!! | CTAAAATGTGGTTTTTTAGG+TGG | - | chr2.3:56676988-56677007 | MS.gene55988:intron | 30.0% |
| !!! | TCGATTTTAAGTTAGATGGT+TGG | - | chr2.3:56676755-56676774 | MS.gene55988:intron | 30.0% |
| AAACCTGTATAAGCAATGGT+TGG | - | chr2.3:56678275-56678294 | MS.gene55988:intron | 35.0% | |
| AAAGAAACACTCAAACCTTG+AGG | - | chr2.3:56677398-56677417 | MS.gene55988:intron | 35.0% | |
| AAATAGGTTATCTTCGGACA+TGG | - | chr2.3:56678383-56678402 | MS.gene55988:intron | 35.0% | |
| AACATGCTAGTGTAAGTACT+AGG | - | chr2.3:56678678-56678697 | MS.gene55988:intron | 35.0% | |
| AACCTGTATAAGCAATGGTT+GGG | - | chr2.3:56678276-56678295 | MS.gene55988:intron | 35.0% | |
| ACAGCACTAAATTTCCTTGT+TGG | + | chr2.3:56677495-56677514 | None:intergenic | 35.0% | |
| ACATACCAAACAACCTAAGA+TGG | + | chr2.3:56677623-56677642 | None:intergenic | 35.0% | |
| AGAGATGTGAAGTTAAGTCT+TGG | - | chr2.3:56676800-56676819 | MS.gene55988:intron | 35.0% | |
| AGTCATACAGTAAGAGATAG+AGG | - | chr2.3:56678321-56678340 | MS.gene55988:intron | 35.0% | |
| AGTTTCATCTTAGGTGGTTT+GGG | - | chr2.3:56678240-56678259 | MS.gene55988:intron | 35.0% | |
| ATAACAGTTGGACAAAAAGG+TGG | - | chr2.3:56679341-56679360 | MS.gene55988:CDS | 35.0% | |
| ATCTTTGTTGCGCAAATGAA+TGG | + | chr2.3:56678871-56678890 | None:intergenic | 35.0% | |
| ATGAGAATCTTGTACTGGAT+TGG | - | chr2.3:56677519-56677538 | MS.gene55988:intron | 35.0% | |
| ATTTGGGGGTAAATTACACA+TGG | - | chr2.3:56677837-56677856 | MS.gene55988:intron | 35.0% | |
| CATACCAAACAACCTAAGAT+GGG | + | chr2.3:56677622-56677641 | None:intergenic | 35.0% | |
| CATGGAGTTGAATATTGGTA+TGG | - | chr2.3:56677458-56677477 | MS.gene55988:intron | 35.0% | |
| CATTGAATAACTGACGTATC+TGG | + | chr2.3:56676965-56676984 | None:intergenic | 35.0% | |
| CCAAAGTTATGAAAAGGTAG+AGG | - | chr2.3:56677326-56677345 | MS.gene55988:intron | 35.0% | |
| GAAGTTCATGAAAGACCATT+AGG | - | chr2.3:56678538-56678557 | MS.gene55988:intron | 35.0% | |
| GAGAAAACCTGTATAAGCAA+TGG | - | chr2.3:56678271-56678290 | MS.gene55988:intron | 35.0% | |
| GAGTTGAATATTGGTATGGA+TGG | - | chr2.3:56677462-56677481 | MS.gene55988:intron | 35.0% | |
| GCTTATAATAGTGACAGGAA+TGG | + | chr2.3:56676874-56676893 | None:intergenic | 35.0% | |
| GGAAACACAATATTCCTGTT+TGG | - | chr2.3:56676821-56676840 | MS.gene55988:intron | 35.0% | |
| GGTGCCTACAAAGAAAAAAT+AGG | - | chr2.3:56678158-56678177 | MS.gene55988:intron | 35.0% | |
| GGTTCATCATTACAATGCAA+AGG | + | chr2.3:56678947-56678966 | None:intergenic | 35.0% | |
| GGTTGAAATTTACCAGTGTT+TGG | - | chr2.3:56678646-56678665 | MS.gene55988:intron | 35.0% | |
| TAGAGATGAGAATCTTGTAC+TGG | - | chr2.3:56677514-56677533 | MS.gene55988:intron | 35.0% | |
| TAGTGTAAGTACTAGGAACA+GGG | - | chr2.3:56678685-56678704 | MS.gene55988:intron | 35.0% | |
| TAGTTATTGGGAATTAGAGG+GGG | - | chr2.3:56676559-56676578 | MS.gene55988:intron | 35.0% | |
| TCTAAGTAGAGTGGATCAAA+TGG | - | chr2.3:56677976-56677995 | MS.gene55988:intron | 35.0% | |
| TGAATAAGTTGCTCGGTTAA+AGG | - | chr2.3:56677919-56677938 | MS.gene55988:intron | 35.0% | |
| TGTTAGAGTTTCATCTTAGG+TGG | - | chr2.3:56678234-56678253 | MS.gene55988:intron | 35.0% | |
| TTTGAACTTGATGCATGGAA+GGG | - | chr2.3:56677735-56677754 | MS.gene55988:intron | 35.0% | |
| ! | ATGCTGCAATTCATCGTTTT+TGG | - | chr2.3:56677286-56677305 | MS.gene55988:intron | 35.0% |
| ! | CAAAACCCTTTTCCATTAGA+TGG | + | chr2.3:56678454-56678473 | None:intergenic | 35.0% |
| ! | CATCTAATGGAAAAGGGTTT+TGG | - | chr2.3:56678452-56678471 | MS.gene55988:intron | 35.0% |
| ! | CCTCTACCTTTTCATAACTT+TGG | + | chr2.3:56677329-56677348 | None:intergenic | 35.0% |
| ! | CTGCTATGTTTTCTACAATG+AGG | + | chr2.3:56677596-56677615 | None:intergenic | 35.0% |
| ! | GAAAACTGGCACAGTTTTTA+GGG | + | chr2.3:56678779-56678798 | None:intergenic | 35.0% |
| ! | TGAAAACTGGCACAGTTTTT+AGG | + | chr2.3:56678780-56678799 | None:intergenic | 35.0% |
| ! | TGAAAGATCATTAGGCCTTT+TGG | - | chr2.3:56677871-56677890 | MS.gene55988:intron | 35.0% |
| ! | TGAGCAGTAAATTTTCCTTC+AGG | + | chr2.3:56678048-56678067 | None:intergenic | 35.0% |
| !! | AGTGACAGGAATGGATTAAA+TGG | + | chr2.3:56676865-56676884 | None:intergenic | 35.0% |
| !! | GTAATGACTAGGTTGGTTAA+AGG | - | chr2.3:56678590-56678609 | MS.gene55988:intron | 35.0% |
| !!! | ATTAGGCCTTTTGGCTTAAT+GGG | - | chr2.3:56678555-56678574 | MS.gene55988:intron | 35.0% |
| !!! | ATTAGGCCTTTTGGTTTGAT+GGG | - | chr2.3:56677880-56677899 | MS.gene55988:intron | 35.0% |
| !!! | ATTCATCGTTTTTGGTACCT+TGG | - | chr2.3:56677294-56677313 | MS.gene55988:intron | 35.0% |
| !!! | TTCATCGTTTTTGGTACCTT+GGG | - | chr2.3:56677295-56677314 | MS.gene55988:intron | 35.0% |
| AAGTAGAGTGGATCAAATGG+AGG | - | chr2.3:56677979-56677998 | MS.gene55988:intron | 40.0% | |
| AATAGCCCCATCAAACCAAA+AGG | + | chr2.3:56677889-56677908 | None:intergenic | 40.0% | |
| AATGGTCCCATTAAGCCAAA+AGG | + | chr2.3:56678564-56678583 | None:intergenic | 40.0% | |
| ACAAATACAGCCAAAACAGG+AGG | + | chr2.3:56679121-56679140 | None:intergenic | 40.0% | |
| ACAAGCACGGTTAAAATGCT+GGG | - | chr2.3:56677946-56677965 | MS.gene55988:intron | 40.0% | |
| ATAAGTTGCTCGGTTAAAGG+TGG | - | chr2.3:56677922-56677941 | MS.gene55988:intron | 40.0% | |
| ATATAGCCGATCCCATCTAA+TGG | - | chr2.3:56678439-56678458 | MS.gene55988:intron | 40.0% | |
| ATTGGAATGCTATGCGTTTG+AGG | - | chr2.3:56676448-56676467 | MS.gene55988:intron | 40.0% | |
| ATTTGCAAAAAAGGTGGGGT+CGG | + | chr2.3:56677788-56677807 | None:intergenic | 40.0% | |
| CATTAAGCCAAAAGGCCTAA+TGG | + | chr2.3:56678556-56678575 | None:intergenic | 40.0% | |
| CCTAGTCATTACCAAGTGAA+TGG | + | chr2.3:56678582-56678601 | None:intergenic | 40.0% | |
| CGATCCCATCTAATGGAAAA+GGG | - | chr2.3:56678446-56678465 | MS.gene55988:intron | 40.0% | |
| CTAGTGAAGCAAATGACGAA+TGG | + | chr2.3:56679409-56679428 | None:intergenic | 40.0% | |
| CTAGTGTAAGTACTAGGAAC+AGG | - | chr2.3:56678684-56678703 | MS.gene55988:intron | 40.0% | |
| CTTTGAACTTGATGCATGGA+AGG | - | chr2.3:56677734-56677753 | MS.gene55988:intron | 40.0% | |
| GAGTTTCATCTTAGGTGGTT+TGG | - | chr2.3:56678239-56678258 | MS.gene55988:intron | 40.0% | |
| GCATGGAATTGAATGTTGGA+TGG | - | chr2.3:56678088-56678107 | MS.gene55988:intron | 40.0% | |
| TACCACAGTTTAGAGAGACA+AGG | + | chr2.3:56679155-56679174 | None:intergenic | 40.0% | |
| TACTGCACAACTATAAGGCT+TGG | - | chr2.3:56677428-56677447 | MS.gene55988:intron | 40.0% | |
| TGATGCATGGAAGGGATTTA+TGG | - | chr2.3:56677743-56677762 | MS.gene55988:intron | 40.0% | |
| TGCTGCATGGAGTTGAATAT+TGG | - | chr2.3:56677453-56677472 | MS.gene55988:intron | 40.0% | |
| TGGATGGTATACAACCAACA+AGG | - | chr2.3:56677478-56677497 | MS.gene55988:intron | 40.0% | |
| TTATCTTCGGACATGGTACA+TGG | - | chr2.3:56678390-56678409 | MS.gene55988:intron | 40.0% | |
| TTCCTTGTCTCTCTAAACTG+TGG | - | chr2.3:56679150-56679169 | MS.gene55988:intron | 40.0% | |
| ! | CCTTTTCCATTAGATGGGAT+CGG | + | chr2.3:56678448-56678467 | None:intergenic | 40.0% |
| ! | GAAGTACCATTCAAACCTGA+AGG | - | chr2.3:56678030-56678049 | MS.gene55988:intron | 40.0% |
| ! | GTGCAGTAAAGTTTTCCTCA+AGG | + | chr2.3:56677416-56677435 | None:intergenic | 40.0% |
| ! | TGAAAGACCATTAGGCCTTT+TGG | - | chr2.3:56678546-56678565 | MS.gene55988:intron | 40.0% |
| ! | TGGTTGATGCAAATAGGTTG+AGG | - | chr2.3:56678472-56678491 | MS.gene55988:intron | 40.0% |
| !! | CCATTCACTTGGTAATGACT+AGG | - | chr2.3:56678579-56678598 | MS.gene55988:intron | 40.0% |
| !! | TCACTTGGTAATGACTAGGT+TGG | - | chr2.3:56678583-56678602 | MS.gene55988:intron | 40.0% |
| !!! | CATTAGGCCTTTTGGCTTAA+TGG | - | chr2.3:56678554-56678573 | MS.gene55988:intron | 40.0% |
| !!! | CATTAGGCCTTTTGGTTTGA+TGG | - | chr2.3:56677879-56677898 | MS.gene55988:intron | 40.0% |
| !!! | GGGTTTTGGTTGATGCAAAT+AGG | - | chr2.3:56678466-56678485 | MS.gene55988:intron | 40.0% |
| !!! | TAGAGGGGGTGTAGTTTTTT+GGG | - | chr2.3:56676573-56676592 | MS.gene55988:intron | 40.0% |
| !!! | TTAGAGGGGGTGTAGTTTTT+TGG | - | chr2.3:56676572-56676591 | MS.gene55988:intron | 40.0% |
| !!! | TTAGGCCTTTTGGTTTGATG+GGG | - | chr2.3:56677881-56677900 | MS.gene55988:intron | 40.0% |
| AACTCGTGTTCAAGAAGCCA+TGG | - | chr2.3:56676398-56676417 | MS.gene55988:intron | 45.0% | |
| AACTTTGGATGAAGGACCCA+AGG | + | chr2.3:56677314-56677333 | None:intergenic | 45.0% | |
| ACATAGCAGAGTCCCATCTT+AGG | - | chr2.3:56677607-56677626 | MS.gene55988:intron | 45.0% | |
| ACGGTTAAAATGCTGGGGAT+AGG | - | chr2.3:56677952-56677971 | MS.gene55988:intron | 45.0% | |
| ACTCTGCTGTTGCATGTCTT+TGG | + | chr2.3:56676328-56676347 | None:intergenic | 45.0% | |
| ATAAGGCTTGGAATGCTGCA+TGG | - | chr2.3:56677440-56677459 | MS.gene55988:intron | 45.0% | |
| ATCACCTTTATGCTCACGCA+AGG | + | chr2.3:56679376-56679395 | None:intergenic | 45.0% | |
| CAAGCACGGTTAAAATGCTG+GGG | - | chr2.3:56677947-56677966 | MS.gene55988:intron | 45.0% | |
| CACAAGCACGGTTAAAATGC+TGG | - | chr2.3:56677945-56677964 | MS.gene55988:intron | 45.0% | |
| CCGATCCCATCTAATGGAAA+AGG | - | chr2.3:56678445-56678464 | MS.gene55988:intron | 45.0% | |
| CTCCCAACCATTGCTTATAC+AGG | + | chr2.3:56678281-56678300 | None:intergenic | 45.0% | |
| GCTTAATGGGACCATTCACT+TGG | - | chr2.3:56678568-56678587 | MS.gene55988:intron | 45.0% | |
| GGGATAGGATCTAAGTAGAG+TGG | - | chr2.3:56677967-56677986 | MS.gene55988:intron | 45.0% | |
| GTTGTAACAGACCCAAACAC+TGG | + | chr2.3:56678661-56678680 | None:intergenic | 45.0% | |
| TGGACAAAAAGGTGGCTGAA+AGG | - | chr2.3:56679349-56679368 | MS.gene55988:CDS | 45.0% | |
| ! | AGCCAAAACAGGAGGTACAA+TGG | + | chr2.3:56679113-56679132 | None:intergenic | 45.0% |
| ! | CTCCATTGTACCTCCTGTTT+TGG | - | chr2.3:56679108-56679127 | MS.gene55988:intron | 45.0% |
| ! | GAACACGAGTTGAATCAAGC+TGG | + | chr2.3:56676389-56676408 | None:intergenic | 45.0% |
| ! | GAGTCCCATCTTAGGTTGTT+TGG | - | chr2.3:56677615-56677634 | MS.gene55988:intron | 45.0% |
| !! | AACTGGCACAGTTTTTAGGG+TGG | + | chr2.3:56678776-56678795 | None:intergenic | 45.0% |
| !! | GGAGTGTTGAGAAGATGGAA+AGG | - | chr2.3:56678297-56678316 | MS.gene55988:intron | 45.0% |
| !!! | ACTGGCACAGTTTTTAGGGT+GGG | + | chr2.3:56678775-56678794 | None:intergenic | 45.0% |
| !!! | AGAGGGGGTGTAGTTTTTTG+GGG | - | chr2.3:56676574-56676593 | MS.gene55988:intron | 45.0% |
| AGAAGCAGCAATGGAAGCCA+TGG | + | chr2.3:56676418-56676437 | None:intergenic | 50.0% | |
| AGCTTCAGCAGAAGCAGCAA+TGG | + | chr2.3:56676427-56676446 | None:intergenic | 50.0% | |
| AGGACCTTGCGTGAGCATAA+AGG | - | chr2.3:56679369-56679388 | MS.gene55988:CDS | 50.0% | |
| CTGCTTCTGCTGAAGCTGAT+TGG | - | chr2.3:56676430-56676449 | MS.gene55988:intron | 50.0% | |
| GCGGTCAGTGAGTTTATCGA+AGG | + | chr2.3:56676355-56676374 | None:intergenic | 50.0% | |
| GGTTAAAGGTGGCACAAGCA+CGG | - | chr2.3:56677933-56677952 | MS.gene55988:intron | 50.0% | |
| TTCGGACATGGTACATGGCA+GGG | - | chr2.3:56678395-56678414 | MS.gene55988:intron | 50.0% | |
| ! | TGGTACATGGCAGGGCATTA+TGG | - | chr2.3:56678403-56678422 | MS.gene55988:intron | 50.0% |
| ! | TTAGGTGGTTTGGGCATGTG+CGG | - | chr2.3:56678249-56678268 | MS.gene55988:intron | 50.0% |
| !! | GGTTGGGAGTGTTGAGAAGA+TGG | - | chr2.3:56678292-56678311 | MS.gene55988:intron | 50.0% |
| !!! | CTGGCACAGTTTTTAGGGTG+GGG | + | chr2.3:56678774-56678793 | None:intergenic | 50.0% |
| !!! | GAGGGGGTGTAGTTTTTTGG+GGG | - | chr2.3:56676575-56676594 | MS.gene55988:intron | 50.0% |
| !!! | GGGTGTAGTTTTTTGGGGGA+GGG | - | chr2.3:56676579-56676598 | MS.gene55988:intron | 50.0% |
| !!! | GGTGTAGTTTTTTGGGGGAG+GGG | - | chr2.3:56676580-56676599 | MS.gene55988:intron | 50.0% |
| !!! | GTGTAGTTTTTTGGGGGAGG+GGG | - | chr2.3:56676581-56676600 | MS.gene55988:intron | 50.0% |
| AGACGAAGGAGTGGAGATGG+TGG | - | chr2.3:56676296-56676315 | MS.gene55988:CDS | 55.0% | |
| CAAGCTGGCGATCTTCAACG+CGG | + | chr2.3:56676374-56676393 | None:intergenic | 55.0% | |
| CTTCGGACATGGTACATGGC+AGG | - | chr2.3:56678394-56678413 | MS.gene55988:intron | 55.0% | |
| TGGAGACGAAGGAGTGGAGA+TGG | - | chr2.3:56676293-56676312 | MS.gene55988:CDS | 55.0% | |
| !!! | GGGGTGTAGTTTTTTGGGGG+AGG | - | chr2.3:56676578-56676597 | MS.gene55988:intron | 55.0% |
| !!! | TTTTTTGGGGGAGGGGGTGT+TGG | - | chr2.3:56676587-56676606 | MS.gene55988:intron | 55.0% |
| GGAGGGTGGAGACGAAGGAG+TGG | - | chr2.3:56676287-56676306 | MS.gene55988:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 56676285 | 56679428 | 56676285 | ID=MS.gene55988 |
| chr2.3 | mRNA | 56676285 | 56679428 | 56676285 | ID=MS.gene55988.t1;Parent=MS.gene55988 |
| chr2.3 | exon | 56679244 | 56679428 | 56679244 | ID=MS.gene55988.t1.exon1;Parent=MS.gene55988.t1 |
| chr2.3 | CDS | 56679244 | 56679428 | 56679244 | ID=cds.MS.gene55988.t1;Parent=MS.gene55988.t1 |
| chr2.3 | exon | 56676451 | 56676517 | 56676451 | ID=MS.gene55988.t1.exon2;Parent=MS.gene55988.t1 |
| chr2.3 | CDS | 56676451 | 56676517 | 56676451 | ID=cds.MS.gene55988.t1;Parent=MS.gene55988.t1 |
| chr2.3 | exon | 56676285 | 56676365 | 56676285 | ID=MS.gene55988.t1.exon3;Parent=MS.gene55988.t1 |
| chr2.3 | CDS | 56676285 | 56676365 | 56676285 | ID=cds.MS.gene55988.t1;Parent=MS.gene55988.t1 |
| Gene Sequence |
| Protein sequence |
