Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69262.t1 | XP_003600850.1 | 100 | 103 | 0 | 0 | 19 | 121 | 92 | 194 | 5.50E-50 | 206.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69262.t1 | Q54YG5 | 62.0 | 100 | 38 | 0 | 19 | 118 | 87 | 186 | 2.3e-28 | 126.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69262.t1 | B7FMS6 | 100.0 | 103 | 0 | 0 | 19 | 121 | 92 | 194 | 4.0e-50 | 206.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene69262 | 0.832221 | 1.07E-55 | -1.69E-46 |
| MS.gene049756 | MS.gene69262 | 0.812686 | 3.74E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene69262 | 0.873708 | 1.19E-67 | -1.69E-46 |
| MS.gene050303 | MS.gene69262 | 0.835532 | 1.59E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene69262 | 0.815797 | 7.69E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene69262 | 0.822472 | 2.33E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene69262 | 0.869784 | 2.39E-66 | -1.69E-46 |
| MS.gene051088 | MS.gene69262 | 0.823461 | 1.37E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene69262 | 0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene69262 | 0.846711 | 1.83E-59 | -1.69E-46 |
| MS.gene051330 | MS.gene69262 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene69262 | 0.803331 | 3.67E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene69262 | 0.850553 | 1.58E-60 | -1.69E-46 |
| MS.gene051687 | MS.gene69262 | 0.808646 | 2.80E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene69262 | 0.850284 | 1.88E-60 | -1.69E-46 |
| MS.gene051748 | MS.gene69262 | 0.84883 | 4.77E-60 | -1.69E-46 |
| MS.gene051756 | MS.gene69262 | 0.807694 | 4.46E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene69262 | 0.819455 | 1.15E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene69262 | 0.870002 | 2.03E-66 | -1.69E-46 |
| MS.gene052176 | MS.gene69262 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene052286 | MS.gene69262 | 0.82241 | 2.40E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene69262 | 0.873362 | 1.56E-67 | -1.69E-46 |
| MS.gene052376 | MS.gene69262 | 0.863203 | 2.94E-64 | -1.69E-46 |
| MS.gene052856 | MS.gene69262 | 0.829406 | 5.24E-55 | -1.69E-46 |
| MS.gene052858 | MS.gene69262 | 0.802677 | 5.01E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene69262 | 0.846572 | 2.00E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene69262 | 0.814944 | 1.19E-51 | -1.69E-46 |
| MS.gene053132 | MS.gene69262 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene69262 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene053952 | MS.gene69262 | 0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene055174 | MS.gene69262 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene69262 | 0.810478 | 1.13E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene69262 | -0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene69262 | 0.800313 | 1.53E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene69262 | -0.81402 | 1.91E-51 | -1.69E-46 |
| MS.gene056091 | MS.gene69262 | 0.823967 | 1.04E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene69262 | 0.806861 | 6.70E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene69262 | 0.865083 | 7.64E-65 | -1.69E-46 |
| MS.gene056760 | MS.gene69262 | 0.827945 | 1.18E-54 | -1.69E-46 |
| MS.gene056830 | MS.gene69262 | -0.81551 | 8.91E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene69262 | 0.85069 | 1.44E-60 | -1.69E-46 |
| MS.gene057079 | MS.gene69262 | 0.831895 | 1.29E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene69262 | 0.820166 | 7.92E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene69262 | 0.842389 | 2.66E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene69262 | 0.852951 | 3.30E-61 | -1.69E-46 |
| MS.gene057705 | MS.gene69262 | 0.827521 | 1.49E-54 | -1.69E-46 |
| MS.gene05795 | MS.gene69262 | 0.826131 | 3.21E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene69262 | 0.817079 | 3.97E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene69262 | 0.823248 | 1.53E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene69262 | 0.874334 | 7.33E-68 | -1.69E-46 |
| MS.gene058238 | MS.gene69262 | 0.857703 | 1.36E-62 | -1.69E-46 |
| MS.gene058798 | MS.gene69262 | 0.81683 | 4.52E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene69262 | 0.897572 | 1.23E-76 | -1.69E-46 |
| MS.gene059830 | MS.gene69262 | 0.80004 | 1.74E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene69262 | 0.851302 | 9.69E-61 | -1.69E-46 |
| MS.gene06001 | MS.gene69262 | 0.886465 | 3.34E-72 | -1.69E-46 |
| MS.gene060165 | MS.gene69262 | 0.820279 | 7.46E-53 | -1.69E-46 |
| MS.gene060297 | MS.gene69262 | 0.835335 | 1.78E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene69262 | 0.801047 | 1.08E-48 | -1.69E-46 |
| MS.gene060586 | MS.gene69262 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene69262 | 0.84572 | 3.40E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69262.t1 | MTR_3g070070 | 100.000 | 103 | 0 | 0 | 19 | 121 | 92 | 194 | 4.65e-72 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69262.t1 | AT5G58030 | 94.118 | 102 | 6 | 0 | 19 | 120 | 92 | 193 | 7.60e-68 | 202 |
Find 28 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATTGAACAGGGTGTTT+TGG | 0.274875 | 3.2:+63832379 | MS.gene69262:intron |
| AACTGTGGCGCATTCGTTGC+TGG | 0.327680 | 3.2:+63832267 | MS.gene69262:CDS |
| CATTCGTTGCTGGAATAGTT+CGG | 0.335466 | 3.2:+63832277 | MS.gene69262:CDS |
| ACAGTGTGGAAAGTACTATT+TGG | 0.365299 | 3.2:+63830674 | MS.gene69262:CDS |
| AGGTCGTTGTTGACCTTCCA+TGG | 0.367963 | 3.2:-63832444 | None:intergenic |
| TTAAACGTTCCCATGTCCTT+TGG | 0.384061 | 3.2:-63832246 | None:intergenic |
| TAAACGTTCCCATGTCCTTT+GGG | 0.399676 | 3.2:-63832245 | None:intergenic |
| AGGATGCTGGATATGCTGTT+GGG | 0.409780 | 3.2:+63829147 | None:intergenic |
| GACTAAATTACTTGTTTACT+AGG | 0.414366 | 3.2:-63832131 | None:intergenic |
| TTTGATAAAATTTGCTGAAG+AGG | 0.436775 | 3.2:+63832478 | MS.gene69262:CDS |
| GAGGATGCTGGATATGCTGT+TGG | 0.441234 | 3.2:+63829146 | None:intergenic |
| AAATGAGCTGTTACAACAGC+TGG | 0.448130 | 3.2:-63832416 | None:intergenic |
| TTACTTAGAGAAGCAAGATT+AGG | 0.452308 | 3.2:+63832598 | MS.gene69262:CDS |
| CATTTCTATCCCAAAGGACA+TGG | 0.480196 | 3.2:+63832236 | MS.gene69262:CDS |
| ATTCGTTGCTGGAATAGTTC+GGG | 0.484863 | 3.2:+63832278 | MS.gene69262:CDS |
| TGAATACATGATCAGTGAAA+AGG | 0.504613 | 3.2:+63832104 | MS.gene69262:CDS |
| ATATTAGGTAGCTGACTCAC+TGG | 0.527018 | 3.2:+63832059 | MS.gene69262:intron |
| GCTGCTTTGCCACAGAGATA+AGG | 0.529706 | 3.2:+63829184 | MS.gene69262:CDS |
| GTGGAAAGTACTATTTGGAA+AGG | 0.553417 | 3.2:+63830679 | MS.gene69262:CDS |
| GTAGCTGACTCACTGGAGAA+AGG | 0.561192 | 3.2:+63832066 | MS.gene69262:CDS |
| GGATGCTGGATATGCTGTTG+GGG | 0.561242 | 3.2:+63829148 | None:intergenic |
| TAGATTCATTTCTATCCCAA+AGG | 0.567029 | 3.2:+63832230 | MS.gene69262:intron |
| GGTCGTTGTTGACCTTCCAT+GGG | 0.567220 | 3.2:-63832443 | None:intergenic |
| TTTATCAAAATTGTGGTCCG+AGG | 0.572560 | 3.2:-63832464 | None:intergenic |
| ATTTCTATCCCAAAGGACAT+GGG | 0.613145 | 3.2:+63832237 | MS.gene69262:CDS |
| TGGAAGGTCAACAACGACCT+CGG | 0.638598 | 3.2:+63832447 | MS.gene69262:CDS |
| GACATGGGAACGTTTAACTG+TGG | 0.710992 | 3.2:+63832252 | MS.gene69262:CDS |
| AGCAACATACCTTATCTCTG+TGG | 0.713795 | 3.2:-63829193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATTTGATTATAATTATT+TGG | + | chr3.2:63830329-63830348 | MS.gene69262:intron | 10.0% |
| !!! | AAGTTTTCTATTATAAAAAT+AGG | - | chr3.2:63831408-63831427 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTGTTATTATATT+AGG | + | chr3.2:63832044-63832063 | MS.gene69262:intron | 10.0% |
| !! | AGAAAAGAAATTATACATTA+TGG | + | chr3.2:63830938-63830957 | MS.gene69262:intron | 15.0% |
| !! | GAAATTAAATTATACAATTC+TGG | + | chr3.2:63829272-63829291 | MS.gene69262:intron | 15.0% |
| !! | TAGAATATAAAGCAAATAAA+TGG | - | chr3.2:63830313-63830332 | None:intergenic | 15.0% |
| !! | TATATATATTTATACAGTCT+TGG | + | chr3.2:63831786-63831805 | MS.gene69262:intron | 15.0% |
| !! | TCTATAAATATTATGATTGT+TGG | + | chr3.2:63831043-63831062 | MS.gene69262:intron | 15.0% |
| !! | TTATAAAAATAGGTCATATT+TGG | - | chr3.2:63831398-63831417 | None:intergenic | 15.0% |
| !!! | ATAAAAGCAAATTTTGATAA+CGG | - | chr3.2:63830711-63830730 | None:intergenic | 15.0% |
| !!! | TCTATATTTTACGAAAAAAA+AGG | + | chr3.2:63830166-63830185 | MS.gene69262:intron | 15.0% |
| !!! | TTTTATCATAGAAATGAAAA+GGG | + | chr3.2:63830222-63830241 | MS.gene69262:intron | 15.0% |
| !! | AAAACATAAGAAATCTCAAA+AGG | - | chr3.2:63831868-63831887 | None:intergenic | 20.0% |
| !! | AACATGATAAATTCTTCAAA+GGG | - | chr3.2:63829769-63829788 | None:intergenic | 20.0% |
| !! | AATTAATGTCCATAAAATGT+TGG | + | chr3.2:63830077-63830096 | MS.gene69262:intron | 20.0% |
| !! | ACAGTTTGTAAACTTTATTA+AGG | + | chr3.2:63829613-63829632 | MS.gene69262:intron | 20.0% |
| !! | AGAATAATCAGTGTTAAAAA+TGG | - | chr3.2:63831634-63831653 | None:intergenic | 20.0% |
| !! | ATAGCAGAAAAAAAAAATCT+AGG | + | chr3.2:63831333-63831352 | MS.gene69262:intron | 20.0% |
| !! | GACTTTATATCTAATTAGAA+TGG | + | chr3.2:63829437-63829456 | MS.gene69262:intron | 20.0% |
| !! | TAAAATATAGAATATGAAGC+TGG | - | chr3.2:63830157-63830176 | None:intergenic | 20.0% |
| !!! | AATTCTAGTTTCAATATTGA+GGG | + | chr3.2:63831266-63831285 | MS.gene69262:intron | 20.0% |
| !!! | AGCAAATTTTATCAAAATTG+TGG | - | chr3.2:63832474-63832493 | None:intergenic | 20.0% |
| !!! | CTTTTATCATAGAAATGAAA+AGG | + | chr3.2:63830221-63830240 | MS.gene69262:intron | 20.0% |
| !!! | GCTAATTTAGAATGTAAAAT+AGG | + | chr3.2:63830884-63830903 | MS.gene69262:intron | 20.0% |
| !!! | GTTATTTGATTTTAAGAGAA+AGG | + | chr3.2:63832335-63832354 | MS.gene69262:intron | 20.0% |
| !!! | TTGAGATTTCTTATGTTTTT+TGG | + | chr3.2:63831869-63831888 | MS.gene69262:intron | 20.0% |
| ! | AATCTTGCAAAAGTTTACTT+TGG | + | chr3.2:63829222-63829241 | MS.gene69262:intron | 25.0% |
| ! | ACACTCTGATAAAATTATAC+AGG | - | chr3.2:63831822-63831841 | None:intergenic | 25.0% |
| ! | AGAGCATAACTTATATTGAA+AGG | - | chr3.2:63831474-63831493 | None:intergenic | 25.0% |
| ! | AGATATTGTTTAACATCTAC+AGG | - | chr3.2:63831181-63831200 | None:intergenic | 25.0% |
| ! | ATAATCAGTGTTAAAAATGG+CGG | - | chr3.2:63831631-63831650 | None:intergenic | 25.0% |
| ! | ATATGAAAGTCAAACTGATT+TGG | - | chr3.2:63829920-63829939 | None:intergenic | 25.0% |
| ! | ATGATTAAAATTTGACCATG+AGG | + | chr3.2:63830531-63830550 | MS.gene69262:intron | 25.0% |
| ! | CAACATGATAAATTCTTCAA+AGG | - | chr3.2:63829770-63829789 | None:intergenic | 25.0% |
| ! | GAAATAAGTCAACTATACAT+TGG | - | chr3.2:63831535-63831554 | None:intergenic | 25.0% |
| ! | GACTAAATTACTTGTTTACT+AGG | - | chr3.2:63832134-63832153 | None:intergenic | 25.0% |
| ! | GATTATTCTTACACTTAGAT+TGG | + | chr3.2:63831645-63831664 | MS.gene69262:intron | 25.0% |
| ! | TCTGATAAAATTATACAGGT+TGG | - | chr3.2:63831818-63831837 | None:intergenic | 25.0% |
| ! | TGTCCAACTTATGATAAATT+GGG | - | chr3.2:63830745-63830764 | None:intergenic | 25.0% |
| !! | CACAAAAAACCAACATTTTA+TGG | - | chr3.2:63830089-63830108 | None:intergenic | 25.0% |
| !! | TATTTCACATAACAGACTTT+TGG | + | chr3.2:63831584-63831603 | MS.gene69262:intron | 25.0% |
| !! | TCGATAAGTTTTTGATATCA+AGG | + | chr3.2:63830007-63830026 | MS.gene69262:intron | 25.0% |
| !!! | AATATTATTCTGAAACTGCA+GGG | + | chr3.2:63830602-63830621 | MS.gene69262:intron | 25.0% |
| !!! | CAATTCTAGTTTCAATATTG+AGG | + | chr3.2:63831265-63831284 | MS.gene69262:intron | 25.0% |
| !!! | TGGAAAATGTGTTGATTATT+CGG | - | chr3.2:63829544-63829563 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTCTATTGAACA+GGG | + | chr3.2:63832371-63832390 | MS.gene69262:intron | 25.0% |
| !!! | TTTAACTTGTTTGATCATTG+AGG | + | chr3.2:63831096-63831115 | MS.gene69262:intron | 25.0% |
| !!! | TTTGATAAAATTTGCTGAAG+AGG | + | chr3.2:63832478-63832497 | MS.gene69262:CDS | 25.0% |
| !!! | TTTGTTTTGTTCTATTGAAC+AGG | + | chr3.2:63832370-63832389 | MS.gene69262:intron | 25.0% |
| AAAATCAAATAACCAGCTGA+TGG | - | chr3.2:63832328-63832347 | None:intergenic | 30.0% | |
| AATATAGAATATGAAGCTGG+TGG | - | chr3.2:63830154-63830173 | None:intergenic | 30.0% | |
| ACAAAAGCAAAATCAATGAG+AGG | - | chr3.2:63832508-63832527 | None:intergenic | 30.0% | |
| ACCTAATGTAGTAATATACC+AGG | - | chr3.2:63829730-63829749 | None:intergenic | 30.0% | |
| AGATATAATTGAGTGCAAAG+AGG | - | chr3.2:63829589-63829608 | None:intergenic | 30.0% | |
| AGTAATGTGTCAAGAGAAAT+TGG | - | chr3.2:63829701-63829720 | None:intergenic | 30.0% | |
| ATAGAAATGAAAAGGGCAAA+GGG | + | chr3.2:63830229-63830248 | MS.gene69262:intron | 30.0% | |
| CAAATAAATGGTTGTGAAAC+AGG | - | chr3.2:63830301-63830320 | None:intergenic | 30.0% | |
| CATACAAATAAAAAGGACCA+TGG | - | chr3.2:63831501-63831520 | None:intergenic | 30.0% | |
| CATCTACAGGTTCTTTAAAT+TGG | - | chr3.2:63831168-63831187 | None:intergenic | 30.0% | |
| CCTAATGTAGTAATATACCA+GGG | - | chr3.2:63829729-63829748 | None:intergenic | 30.0% | |
| CGTGTTGCATACAAATAAAA+AGG | - | chr3.2:63831508-63831527 | None:intergenic | 30.0% | |
| CTGTCCAACTTATGATAAAT+TGG | - | chr3.2:63830746-63830765 | None:intergenic | 30.0% | |
| GATATAATTGAGTGCAAAGA+GGG | - | chr3.2:63829588-63829607 | None:intergenic | 30.0% | |
| GCTCAACAAAAATGGAATAT+AGG | - | chr3.2:63831678-63831697 | None:intergenic | 30.0% | |
| GTCCAACTTATGATAAATTG+GGG | - | chr3.2:63830744-63830763 | None:intergenic | 30.0% | |
| GTCGGAAAAAAGATATTGAA+TGG | - | chr3.2:63830392-63830411 | None:intergenic | 30.0% | |
| TAGATTCATTTCTATCCCAA+AGG | + | chr3.2:63832230-63832249 | MS.gene69262:intron | 30.0% | |
| TATTTCATGCCATTGAGTAA+CGG | - | chr3.2:63830815-63830834 | None:intergenic | 30.0% | |
| TCCAACTTATGATAAATTGG+GGG | - | chr3.2:63830743-63830762 | None:intergenic | 30.0% | |
| TCTAAATTAGCATACTACAC+CGG | - | chr3.2:63830875-63830894 | None:intergenic | 30.0% | |
| TCTGTGTAAACAACTAAACA+TGG | - | chr3.2:63831704-63831723 | None:intergenic | 30.0% | |
| TGAATACATGATCAGTGAAA+AGG | + | chr3.2:63832104-63832123 | MS.gene69262:CDS | 30.0% | |
| TGCTACAATTTACTGACAAT+TGG | - | chr3.2:63830121-63830140 | None:intergenic | 30.0% | |
| TTACTTAGAGAAGCAAGATT+AGG | + | chr3.2:63832598-63832617 | MS.gene69262:CDS | 30.0% | |
| TTGAAACTAGAATTGTGTAG+CGG | - | chr3.2:63831260-63831279 | None:intergenic | 30.0% | |
| TTTCAATATTGAGGGAATAG+CGG | + | chr3.2:63831274-63831293 | MS.gene69262:intron | 30.0% | |
| ! | AACAAATTTTTCCACCATCT+TGG | + | chr3.2:63830412-63830431 | MS.gene69262:intron | 30.0% |
| ! | ATTCGGGATGTTCTTTTAAT+AGG | - | chr3.2:63829527-63829546 | None:intergenic | 30.0% |
| ! | ATTGAAAGGTGTACGTATTA+CGG | - | chr3.2:63831460-63831479 | None:intergenic | 30.0% |
| ! | CAAAAATCACGTCTTTAAGA+AGG | - | chr3.2:63830839-63830858 | None:intergenic | 30.0% |
| ! | CAATTTATCATAAGTTGGAC+AGG | + | chr3.2:63830744-63830763 | MS.gene69262:intron | 30.0% |
| ! | GATGCATCATATACTCATTT+TGG | + | chr3.2:63831976-63831995 | MS.gene69262:intron | 30.0% |
| ! | GGGTGTTTAGTTTCATTATA+CGG | - | chr3.2:63829944-63829963 | None:intergenic | 30.0% |
| ! | TATTTCACACAAAGCTGTTT+TGG | + | chr3.2:63831012-63831031 | MS.gene69262:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr3.2:63829900-63829919 | None:intergenic | 30.0% |
| !! | AATTATTTGGCATCGACAAT+TGG | + | chr3.2:63830342-63830361 | MS.gene69262:intron | 30.0% |
| !! | AGATTTTGAGAGATTCTACT+TGG | - | chr3.2:63829564-63829583 | None:intergenic | 30.0% |
| !! | ATATTCCATTTTTGTTGAGC+TGG | + | chr3.2:63831678-63831697 | MS.gene69262:intron | 30.0% |
| !! | ATCATATACTCATTTTGGTC+GGG | + | chr3.2:63831981-63832000 | MS.gene69262:intron | 30.0% |
| !! | ATGGTGGAAAAATTTGTTGT+CGG | - | chr3.2:63830410-63830429 | None:intergenic | 30.0% |
| !! | CAATATTATTCTGAAACTGC+AGG | + | chr3.2:63830601-63830620 | MS.gene69262:intron | 30.0% |
| !! | CATCATATACTCATTTTGGT+CGG | + | chr3.2:63831980-63831999 | MS.gene69262:intron | 30.0% |
| !! | GGAAAATGTGTTGATTATTC+GGG | - | chr3.2:63829543-63829562 | None:intergenic | 30.0% |
| !! | TCTTCATTCTCTAAAATGAG+AGG | + | chr3.2:63830442-63830461 | MS.gene69262:intron | 30.0% |
| AAACAGTTCTTCTCATACCA+AGG | - | chr3.2:63831138-63831157 | None:intergenic | 35.0% | |
| AAATTGGTACAAGAATCCGT+GGG | - | chr3.2:63829685-63829704 | None:intergenic | 35.0% | |
| AACAGTTCTTCTCATACCAA+GGG | - | chr3.2:63831137-63831156 | None:intergenic | 35.0% | |
| AACTCATCCAATACTATGTC+TGG | + | chr3.2:63830266-63830285 | MS.gene69262:intron | 35.0% | |
| AAGAATTGAACCCAAGTCAT+AGG | - | chr3.2:63830204-63830223 | None:intergenic | 35.0% | |
| ACAAATAAAAAGGACCATGG+AGG | - | chr3.2:63831498-63831517 | None:intergenic | 35.0% | |
| ACTCATCCAATACTATGTCT+GGG | + | chr3.2:63830267-63830286 | MS.gene69262:intron | 35.0% | |
| AGGATTTGAACCTATGACAT+CGG | + | chr3.2:63829473-63829492 | MS.gene69262:intron | 35.0% | |
| AGGTGATCGTCTGTATATAT+TGG | + | chr3.2:63830491-63830510 | MS.gene69262:intron | 35.0% | |
| ATCAAAAACTTATCGAGTCC+AGG | - | chr3.2:63830003-63830022 | None:intergenic | 35.0% | |
| ATGAAGAAATGAAGCCAAGA+TGG | - | chr3.2:63830429-63830448 | None:intergenic | 35.0% | |
| ATTTCTATCCCAAAGGACAT+GGG | + | chr3.2:63832237-63832256 | MS.gene69262:CDS | 35.0% | |
| CAACTTATGATAAATTGGGG+GGG | - | chr3.2:63830741-63830760 | None:intergenic | 35.0% | |
| CACAGATTGAGATGTTAAGT+GGG | - | chr3.2:63829964-63829983 | None:intergenic | 35.0% | |
| CATAGAAATGAAAAGGGCAA+AGG | + | chr3.2:63830228-63830247 | MS.gene69262:intron | 35.0% | |
| CCAACTTATGATAAATTGGG+GGG | - | chr3.2:63830742-63830761 | None:intergenic | 35.0% | |
| CCCTGGTATATTACTACATT+AGG | + | chr3.2:63829726-63829745 | MS.gene69262:intron | 35.0% | |
| CTAAATTAGCATACTACACC+GGG | - | chr3.2:63830874-63830893 | None:intergenic | 35.0% | |
| GCTTTAGTGCTTTAACATAG+TGG | + | chr3.2:63831223-63831242 | MS.gene69262:intron | 35.0% | |
| GTACGTATTACGGTGAATAT+AGG | - | chr3.2:63831450-63831469 | None:intergenic | 35.0% | |
| TCACAGATTGAGATGTTAAG+TGG | - | chr3.2:63829965-63829984 | None:intergenic | 35.0% | |
| TGACACATTACTAATTTCCC+TGG | + | chr3.2:63829709-63829728 | MS.gene69262:intron | 35.0% | |
| TGGGACTAAAGTAGAGAAAT+AGG | - | chr3.2:63829381-63829400 | None:intergenic | 35.0% | |
| TTAAAATTTGACCATGAGGC+TGG | + | chr3.2:63830535-63830554 | MS.gene69262:intron | 35.0% | |
| TTTATCAAAATTGTGGTCCG+AGG | - | chr3.2:63832467-63832486 | None:intergenic | 35.0% | |
| ! | CTACCATTGTTGTTAAGTAG+TGG | + | chr3.2:63831199-63831218 | MS.gene69262:intron | 35.0% |
| ! | GTATATGATGCATCGATAAC+AGG | - | chr3.2:63831970-63831989 | None:intergenic | 35.0% |
| ! | GTCATATGTTTGAAACATGC+AGG | + | chr3.2:63830965-63830984 | MS.gene69262:intron | 35.0% |
| ! | TTTTGGTCAACTTCAAGATC+TGG | + | chr3.2:63831886-63831905 | MS.gene69262:intron | 35.0% |
| ! | TTTTTGACCCTTTTACATCC+CGG | + | chr3.2:63830853-63830872 | MS.gene69262:intron | 35.0% |
| !! | ACAGTGTGGAAAGTACTATT+TGG | + | chr3.2:63830674-63830693 | MS.gene69262:CDS | 35.0% |
| !! | GTGGAAAGTACTATTTGGAA+AGG | + | chr3.2:63830679-63830698 | MS.gene69262:CDS | 35.0% |
| !! | TGGCTTTATAAGTCATGTGT+GGG | + | chr3.2:63831063-63831082 | MS.gene69262:intron | 35.0% |
| !! | TTATACAATTCTGGAACCTG+AGG | + | chr3.2:63829281-63829300 | MS.gene69262:intron | 35.0% |
| !! | TTCTATTGAACAGGGTGTTT+TGG | + | chr3.2:63832379-63832398 | MS.gene69262:intron | 35.0% |
| !! | TTGGCTTTATAAGTCATGTG+TGG | + | chr3.2:63831062-63831081 | MS.gene69262:intron | 35.0% |
| !!! | TATCTATGCTTTTTCGCACA+AGG | + | chr3.2:63830560-63830579 | MS.gene69262:intron | 35.0% |
| !!! | TCGGGAATGTCTTACTTTTT+TGG | + | chr3.2:63831999-63832018 | MS.gene69262:intron | 35.0% |
| AAATGAGCTGTTACAACAGC+TGG | - | chr3.2:63832419-63832438 | None:intergenic | 40.0% | |
| AACCCAAGTCATAGGTCATA+CGG | - | chr3.2:63830196-63830215 | None:intergenic | 40.0% | |
| AAGAAATGAAGCCAAGATGG+TGG | - | chr3.2:63830426-63830445 | None:intergenic | 40.0% | |
| AATAGGTCCATCACAGAACA+CGG | - | chr3.2:63829510-63829529 | None:intergenic | 40.0% | |
| AGCAACATACCTTATCTCTG+TGG | - | chr3.2:63829196-63829215 | None:intergenic | 40.0% | |
| ATACTACACCGGGATGTAAA+AGG | - | chr3.2:63830864-63830883 | None:intergenic | 40.0% | |
| ATGATAAATTGGGGGGGATA+GGG | - | chr3.2:63830735-63830754 | None:intergenic | 40.0% | |
| ATTCACAGCAGTGTTGTCAA+TGG | + | chr3.2:63829401-63829420 | MS.gene69262:intron | 40.0% | |
| ATTCGTTGCTGGAATAGTTC+GGG | + | chr3.2:63832278-63832297 | MS.gene69262:CDS | 40.0% | |
| CACTATGGCGTCATTTACTA+TGG | - | chr3.2:63829885-63829904 | None:intergenic | 40.0% | |
| CATTCGTTGCTGGAATAGTT+CGG | + | chr3.2:63832277-63832296 | MS.gene69262:CDS | 40.0% | |
| CATTTCTATCCCAAAGGACA+TGG | + | chr3.2:63832236-63832255 | MS.gene69262:CDS | 40.0% | |
| CCCCCCAATTTATCATAAGT+TGG | + | chr3.2:63830739-63830758 | MS.gene69262:intron | 40.0% | |
| GAAATTGGTACAAGAATCCG+TGG | - | chr3.2:63829686-63829705 | None:intergenic | 40.0% | |
| GAATCCATAGACAACCAATG+AGG | - | chr3.2:63829644-63829663 | None:intergenic | 40.0% | |
| GACTATATGCGGTGATTAGT+TGG | + | chr3.2:63829317-63829336 | MS.gene69262:intron | 40.0% | |
| GGATTTGAACCTATGACATC+GGG | + | chr3.2:63829474-63829493 | MS.gene69262:intron | 40.0% | |
| TAAACGTTCCCATGTCCTTT+GGG | - | chr3.2:63832248-63832267 | None:intergenic | 40.0% | |
| TACTACACCGGGATGTAAAA+GGG | - | chr3.2:63830863-63830882 | None:intergenic | 40.0% | |
| TATGATAAATTGGGGGGGAT+AGG | - | chr3.2:63830736-63830755 | None:intergenic | 40.0% | |
| TCAACTTCAAGATCTGGTGT+TGG | + | chr3.2:63831892-63831911 | MS.gene69262:intron | 40.0% | |
| TCAATCTGTGAGCCTTTCAT+TGG | + | chr3.2:63829974-63829993 | MS.gene69262:intron | 40.0% | |
| TCTAGAAAACCCGATGTCAT+AGG | - | chr3.2:63829486-63829505 | None:intergenic | 40.0% | |
| TGACAACACTGCTGTGAATT+GGG | - | chr3.2:63829400-63829419 | None:intergenic | 40.0% | |
| TGGGATACACTTGTGGATAA+TGG | - | chr3.2:63829666-63829685 | None:intergenic | 40.0% | |
| TGTGTTACACCGTTACTCAA+TGG | + | chr3.2:63830803-63830822 | MS.gene69262:intron | 40.0% | |
| TTAAACGTTCCCATGTCCTT+TGG | - | chr3.2:63832249-63832268 | None:intergenic | 40.0% | |
| TTATCCACAAGTGTATCCCA+CGG | + | chr3.2:63829666-63829685 | MS.gene69262:intron | 40.0% | |
| TTATTAAGGCGAGTCCTCAT+TGG | + | chr3.2:63829627-63829646 | MS.gene69262:intron | 40.0% | |
| TTCACAGCAGTGTTGTCAAT+GGG | + | chr3.2:63829402-63829421 | MS.gene69262:intron | 40.0% | |
| TTCACTGTATTTCCATCAGC+TGG | + | chr3.2:63832313-63832332 | MS.gene69262:intron | 40.0% | |
| TTGACAACACTGCTGTGAAT+TGG | - | chr3.2:63829401-63829420 | None:intergenic | 40.0% | |
| TTGCTTCTCTAAGTAACACC+TGG | - | chr3.2:63832594-63832613 | None:intergenic | 40.0% | |
| ! | AAGAAATCTCAAAAGGCACG+AGG | - | chr3.2:63831861-63831880 | None:intergenic | 40.0% |
| ! | ATATTAGGTAGCTGACTCAC+TGG | + | chr3.2:63832059-63832078 | MS.gene69262:intron | 40.0% |
| ! | CTTTTGTACACAGTACAGTG+TGG | + | chr3.2:63830660-63830679 | MS.gene69262:intron | 40.0% |
| !! | AGGAGATAGTGGACTATATG+CGG | + | chr3.2:63829306-63829325 | MS.gene69262:intron | 40.0% |
| !! | ATTGAACAGGGTGTTTTGGA+TGG | + | chr3.2:63832383-63832402 | MS.gene69262:intron | 40.0% |
| !!! | TGTTTTTTGCGCTATCTTCC+AGG | + | chr3.2:63832573-63832592 | MS.gene69262:intron | 40.0% |
| AAAGGGCAAAGGGTAACAGA+TGG | + | chr3.2:63830239-63830258 | MS.gene69262:intron | 45.0% | |
| AAGGGCAAAGGGTAACAGAT+GGG | + | chr3.2:63830240-63830259 | MS.gene69262:intron | 45.0% | |
| ACAGCGTTGCAGACAAATAG+CGG | - | chr3.2:63831560-63831579 | None:intergenic | 45.0% | |
| AGAAGGGAGACACGATTGTT+AGG | + | chr3.2:63830629-63830648 | MS.gene69262:intron | 45.0% | |
| AGAATGGAATCACGCTGTCT+AGG | + | chr3.2:63829453-63829472 | MS.gene69262:intron | 45.0% | |
| AGGATCCATGCACATCCATT+GGG | + | chr3.2:63830462-63830481 | MS.gene69262:intron | 45.0% | |
| ATAGGTCCATCACAGAACAC+GGG | - | chr3.2:63829509-63829528 | None:intergenic | 45.0% | |
| ATCAATCAGCAGTGAGCTGA+TGG | + | chr3.2:63832194-63832213 | MS.gene69262:intron | 45.0% | |
| CATGGCCAGCTCAACAAAAA+TGG | - | chr3.2:63831686-63831705 | None:intergenic | 45.0% | |
| CTCATGCCCAGACATAGTAT+TGG | - | chr3.2:63830276-63830295 | None:intergenic | 45.0% | |
| GAAACTGCAGGGAAACAGAA+GGG | + | chr3.2:63830613-63830632 | MS.gene69262:intron | 45.0% | |
| GACATGGGAACGTTTAACTG+TGG | + | chr3.2:63832252-63832271 | MS.gene69262:CDS | 45.0% | |
| GCATAGATATTCCAGCCTCA+TGG | - | chr3.2:63830549-63830568 | None:intergenic | 45.0% | |
| GCGCCACTACTTAACAACAA+TGG | - | chr3.2:63831205-63831224 | None:intergenic | 45.0% | |
| TAAGTTATGCTCTGCCTCCA+TGG | + | chr3.2:63831481-63831500 | MS.gene69262:intron | 45.0% | |
| TGAAACTGCAGGGAAACAGA+AGG | + | chr3.2:63830612-63830631 | MS.gene69262:intron | 45.0% | |
| TGCCGTATGACCTATGACTT+GGG | + | chr3.2:63830191-63830210 | MS.gene69262:intron | 45.0% | |
| TTGCCGTATGACCTATGACT+TGG | + | chr3.2:63830190-63830209 | MS.gene69262:intron | 45.0% | |
| ! | AACAGCTCATTTTGTGCCCA+TGG | + | chr3.2:63832427-63832446 | MS.gene69262:CDS | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3.2:63829836-63829855 | MS.gene69262:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr3.2:63829835-63829854 | MS.gene69262:intron | 45.0% |
| ! | GAGTCCTCATTGGTTGTCTA+TGG | + | chr3.2:63829637-63829656 | MS.gene69262:intron | 45.0% |
| AACCTGAGGTGAGGAGATAG+TGG | + | chr3.2:63829295-63829314 | MS.gene69262:intron | 50.0% | |
| ACAGACCCAATGGATGTGCA+TGG | - | chr3.2:63830470-63830489 | None:intergenic | 50.0% | |
| AGGTCGTTGTTGACCTTCCA+TGG | - | chr3.2:63832447-63832466 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr3.2:63829837-63829856 | None:intergenic | 50.0% | |
| CGATCACCTAACAGACCCAA+TGG | - | chr3.2:63830480-63830499 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr3.2:63829840-63829859 | MS.gene69262:intron | 50.0% | |
| CTTCAAAGGGAAGCAACTGC+TGG | - | chr3.2:63829756-63829775 | None:intergenic | 50.0% | |
| GAATCCGTGGGATACACTTG+TGG | - | chr3.2:63829673-63829692 | None:intergenic | 50.0% | |
| GAGGATCCATGCACATCCAT+TGG | + | chr3.2:63830461-63830480 | MS.gene69262:intron | 50.0% | |
| GAGTCCAGGACTCCAATGAA+AGG | - | chr3.2:63829989-63830008 | None:intergenic | 50.0% | |
| GCACATCCATTGGGTCTGTT+AGG | + | chr3.2:63830471-63830490 | MS.gene69262:intron | 50.0% | |
| GGTCGTTGTTGACCTTCCAT+GGG | - | chr3.2:63832446-63832465 | None:intergenic | 50.0% | |
| GTTCAACTTGATGTCGCCCT+TGG | + | chr3.2:63831118-63831137 | MS.gene69262:intron | 50.0% | |
| TCTAGACCCGTGTTCTGTGA+TGG | + | chr3.2:63829500-63829519 | MS.gene69262:intron | 50.0% | |
| TGAGCCTTTCATTGGAGTCC+TGG | + | chr3.2:63829982-63830001 | MS.gene69262:intron | 50.0% | |
| TGGAAGGTCAACAACGACCT+CGG | + | chr3.2:63832447-63832466 | MS.gene69262:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr3.2:63829834-63829853 | MS.gene69262:intron | 50.0% |
| ! | GCTCATTTTGTGCCCATGGA+AGG | + | chr3.2:63832431-63832450 | MS.gene69262:CDS | 50.0% |
| ! | GCTGCTTTGCCACAGAGATA+AGG | + | chr3.2:63829184-63829203 | MS.gene69262:CDS | 50.0% |
| ! | GTAGCTGACTCACTGGAGAA+AGG | + | chr3.2:63832066-63832085 | MS.gene69262:CDS | 50.0% |
| !! | CAATTCTGGAACCTGAGGTG+AGG | + | chr3.2:63829286-63829305 | MS.gene69262:intron | 50.0% |
| AACTGTGGCGCATTCGTTGC+TGG | + | chr3.2:63832267-63832286 | MS.gene69262:CDS | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr3.2:63829848-63829867 | MS.gene69262:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr3.2:63829849-63829868 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr3.2:63829842-63829861 | None:intergenic | 55.0% | |
| GTCCACTATCTCCTCACCTC+AGG | - | chr3.2:63829300-63829319 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr3.2:63829848-63829867 | None:intergenic | 55.0% | |
| !! | CAGGGTGTTTTGGATGGTGC+TGG | + | chr3.2:63832389-63832408 | MS.gene69262:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63829150 | 63832624 | 63829150 | ID=MS.gene69262 |
| chr3.2 | mRNA | 63829150 | 63832624 | 63829150 | ID=MS.gene69262.t1;Parent=MS.gene69262 |
| chr3.2 | exon | 63829150 | 63829205 | 63829150 | ID=MS.gene69262.t1.exon1;Parent=MS.gene69262.t1 |
| chr3.2 | CDS | 63829150 | 63829205 | 63829150 | ID=cds.MS.gene69262.t1;Parent=MS.gene69262.t1 |
| chr3.2 | exon | 63830673 | 63830700 | 63830673 | ID=MS.gene69262.t1.exon2;Parent=MS.gene69262.t1 |
| chr3.2 | CDS | 63830673 | 63830700 | 63830673 | ID=cds.MS.gene69262.t1;Parent=MS.gene69262.t1 |
| chr3.2 | exon | 63832066 | 63832142 | 63832066 | ID=MS.gene69262.t1.exon3;Parent=MS.gene69262.t1 |
| chr3.2 | CDS | 63832066 | 63832142 | 63832066 | ID=cds.MS.gene69262.t1;Parent=MS.gene69262.t1 |
| chr3.2 | exon | 63832233 | 63832299 | 63832233 | ID=MS.gene69262.t1.exon4;Parent=MS.gene69262.t1 |
| chr3.2 | CDS | 63832233 | 63832299 | 63832233 | ID=cds.MS.gene69262.t1;Parent=MS.gene69262.t1 |
| chr3.2 | exon | 63832392 | 63832499 | 63832392 | ID=MS.gene69262.t1.exon5;Parent=MS.gene69262.t1 |
| chr3.2 | CDS | 63832392 | 63832499 | 63832392 | ID=cds.MS.gene69262.t1;Parent=MS.gene69262.t1 |
| chr3.2 | exon | 63832595 | 63832624 | 63832595 | ID=MS.gene69262.t1.exon6;Parent=MS.gene69262.t1 |
| chr3.2 | CDS | 63832595 | 63832624 | 63832595 | ID=cds.MS.gene69262.t1;Parent=MS.gene69262.t1 |
| Gene Sequence |
| Protein sequence |
