Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051762.t1 | AES82055.2 | 95.4 | 389 | 16 | 1 | 1 | 389 | 15 | 401 | 3.20E-224 | 787.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051762.t1 | Q9FVS1 | 44.5 | 355 | 183 | 6 | 34 | 384 | 3 | 347 | 1.1e-84 | 315.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051762.t1 | G7KQW3 | 95.4 | 389 | 16 | 1 | 1 | 389 | 15 | 401 | 2.3e-224 | 787.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050306 | MS.gene051762 | 0.830873 | 2.30E-55 | -1.69E-46 |
| MS.gene051762 | MS.gene24686 | 0.829359 | 5.38E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95088 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene43440 | PPI |
| MS.gene75065 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene42887 | PPI |
| MS.gene051762 | MS.gene071037 | PPI |
| MS.gene051762 | MS.gene42893 | PPI |
| MS.gene051762 | MS.gene98671 | PPI |
| MS.gene98670 | MS.gene051762 | PPI |
| MS.gene064044 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene024275 | PPI |
| MS.gene051762 | MS.gene42889 | PPI |
| MS.gene75067 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene009311 | PPI |
| MS.gene051762 | MS.gene005636 | PPI |
| MS.gene051762 | MS.gene024343 | PPI |
| MS.gene071039 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene05311 | PPI |
| MS.gene52540 | MS.gene051762 | PPI |
| MS.gene03004 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene53925 | PPI |
| MS.gene051762 | MS.gene47120 | PPI |
| MS.gene024341 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene012753 | PPI |
| MS.gene59977 | MS.gene051762 | PPI |
| MS.gene42891 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene98673 | PPI |
| MS.gene33922 | MS.gene051762 | PPI |
| MS.gene051762 | MS.gene67877 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051762.t1 | MTR_7g104790 | 95.373 | 389 | 16 | 1 | 1 | 389 | 15 | 401 | 0.0 | 745 |
| MS.gene051762.t1 | MTR_7g104790 | 95.251 | 379 | 16 | 1 | 11 | 389 | 1 | 377 | 0.0 | 725 |
| MS.gene051762.t1 | MTR_7g104785 | 80.716 | 363 | 55 | 3 | 26 | 385 | 17 | 367 | 0.0 | 589 |
| MS.gene051762.t1 | MTR_1g059840 | 64.304 | 381 | 124 | 6 | 12 | 387 | 1 | 374 | 1.25e-173 | 489 |
| MS.gene051762.t1 | MTR_7g104760 | 70.629 | 143 | 25 | 1 | 225 | 367 | 14 | 139 | 1.75e-66 | 207 |
| MS.gene051762.t1 | MTR_2g034630 | 25.623 | 281 | 146 | 11 | 111 | 381 | 124 | 351 | 1.24e-14 | 75.1 |
| MS.gene051762.t1 | MTR_3g114970 | 25.826 | 333 | 185 | 14 | 44 | 339 | 5 | 312 | 1.67e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051762.t1 | AT1G57790 | 44.507 | 355 | 183 | 6 | 34 | 384 | 3 | 347 | 1.70e-100 | 302 |
| MS.gene051762.t1 | AT3G56470 | 41.880 | 351 | 179 | 7 | 42 | 386 | 27 | 358 | 3.98e-82 | 256 |
| MS.gene051762.t1 | AT4G00893 | 39.205 | 352 | 199 | 8 | 43 | 388 | 44 | 386 | 9.54e-79 | 248 |
| MS.gene051762.t1 | AT4G12370 | 39.159 | 309 | 169 | 9 | 91 | 389 | 1 | 300 | 1.79e-67 | 216 |
| MS.gene051762.t1 | AT4G10660 | 41.000 | 300 | 161 | 6 | 72 | 364 | 3 | 293 | 2.05e-67 | 216 |
| MS.gene051762.t1 | AT1G49360 | 34.217 | 415 | 223 | 16 | 1 | 382 | 37 | 434 | 1.46e-53 | 184 |
| MS.gene051762.t1 | AT1G49360 | 34.217 | 415 | 223 | 16 | 1 | 382 | 60 | 457 | 2.87e-53 | 184 |
| MS.gene051762.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 47 | 383 | 8 | 355 | 1.43e-51 | 177 |
| MS.gene051762.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 47 | 383 | 8 | 355 | 1.43e-51 | 177 |
| MS.gene051762.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 47 | 383 | 8 | 355 | 1.43e-51 | 177 |
| MS.gene051762.t1 | AT3G18720 | 34.085 | 355 | 189 | 11 | 46 | 384 | 51 | 376 | 2.84e-50 | 173 |
| MS.gene051762.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 56 | 248 | 1 | 189 | 7.26e-48 | 163 |
| MS.gene051762.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 56 | 248 | 1 | 189 | 7.26e-48 | 163 |
| MS.gene051762.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 43 | 174 | 9 | 134 | 2.53e-35 | 127 |
| MS.gene051762.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 43 | 174 | 9 | 134 | 2.53e-35 | 127 |
| MS.gene051762.t1 | AT2G44735 | 40.260 | 154 | 78 | 5 | 149 | 298 | 109 | 252 | 4.77e-23 | 99.8 |
| MS.gene051762.t1 | AT4G10700 | 41.270 | 126 | 66 | 3 | 268 | 386 | 119 | 243 | 1.36e-20 | 90.5 |
| MS.gene051762.t1 | AT4G10700 | 47.312 | 93 | 43 | 2 | 72 | 164 | 3 | 89 | 7.43e-20 | 88.6 |
Find 87 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTAACTTGAAAATTAT+TGG | 0.158009 | 7.4:-7744683 | None:intergenic |
| GAACCACCAAAAGACTTTAT+TGG | 0.163822 | 7.4:+7744944 | MS.gene051762:CDS |
| CAGAAGTTCTCAAAAGTATT+TGG | 0.184683 | 7.4:-7744917 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.4:+7744821 | MS.gene051762:CDS |
| TTTCCATAGAAACGGACTTT+AGG | 0.272121 | 7.4:-7744824 | None:intergenic |
| GATCTAACTTGAAAATTATT+GGG | 0.325599 | 7.4:-7744682 | None:intergenic |
| CTCTCTTTAATCCCTTTACT+AGG | 0.326943 | 7.4:+7744249 | MS.gene051762:CDS |
| CAAGTTAGATCTGACACTAA+TGG | 0.329403 | 7.4:+7744694 | MS.gene051762:CDS |
| ATCCAGCCAATAAAGTCTTT+TGG | 0.339525 | 7.4:-7744950 | None:intergenic |
| AGAACTCTCTGCTAAGCATT+TGG | 0.351257 | 7.4:-7744576 | None:intergenic |
| TTGACCCACTTGAACGTACT+TGG | 0.354769 | 7.4:+7744531 | MS.gene051762:CDS |
| TTCCATAGAAACGGACTTTA+GGG | 0.361226 | 7.4:-7744823 | None:intergenic |
| AACATTCTTCGCATGATGTC+GGG | 0.375799 | 7.4:+7743319 | MS.gene051762:CDS |
| TCTTGTCTCGGTTGGATGTT+GGG | 0.383783 | 7.4:+7743970 | MS.gene051762:CDS |
| GCTATAAGCACGTGTTATCC+TGG | 0.393896 | 7.4:+7744389 | MS.gene051762:CDS |
| TCTTGTGCTCCAACATCAAC+TGG | 0.401697 | 7.4:+7744323 | MS.gene051762:CDS |
| GAACTCTCTGCTAAGCATTT+GGG | 0.407425 | 7.4:-7744575 | None:intergenic |
| ATGGTTGGTTATTGCTAAAC+CGG | 0.409750 | 7.4:+7744189 | MS.gene051762:CDS |
| GGAATTGTTCTTGTCTCGGT+TGG | 0.421431 | 7.4:+7743962 | MS.gene051762:CDS |
| TTCCCTTGAGTTGCCAGAGT+TGG | 0.426018 | 7.4:+7744139 | MS.gene051762:CDS |
| AACAATTCCAAGACTTCAGC+AGG | 0.429634 | 7.4:-7743948 | None:intergenic |
| TTCTTGTCTCGGTTGGATGT+TGG | 0.436225 | 7.4:+7743969 | MS.gene051762:CDS |
| TCTTGGAATTGTTCTTGTCT+CGG | 0.438217 | 7.4:+7743958 | MS.gene051762:CDS |
| TATTGCTAAACCGGCAGGAC+TGG | 0.447316 | 7.4:+7744198 | MS.gene051762:CDS |
| ACAATTTGGAGCTGCAAACA+TGG | 0.451046 | 7.4:+7743916 | MS.gene051762:CDS |
| TTCGCATGATGTCGGGGAAA+AGG | 0.455236 | 7.4:+7743326 | MS.gene051762:CDS |
| CTCTGGCAACTCAAGGGAAT+AGG | 0.460842 | 7.4:-7744135 | None:intergenic |
| CGATCTCCCTGCTGAAGTCT+TGG | 0.469551 | 7.4:+7743941 | MS.gene051762:CDS |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.4:+7744722 | MS.gene051762:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.470767 | 7.4:-7744119 | None:intergenic |
| TCTCTTTAATCCCTTTACTA+GGG | 0.471216 | 7.4:+7744250 | MS.gene051762:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.471683 | 7.4:-7744061 | None:intergenic |
| TGATATGTCCTGTCAAACTT+TGG | 0.477303 | 7.4:-7744287 | None:intergenic |
| CTTGAGTTGCCAGAGTTGGA+TGG | 0.483726 | 7.4:+7744143 | MS.gene051762:CDS |
| CCTGTCACGACACTGCTCAC+TGG | 0.484710 | 7.4:-7744888 | None:intergenic |
| GTGATCAGATCCCTAGTAAA+GGG | 0.491655 | 7.4:-7744260 | None:intergenic |
| CTGTCACGACACTGCTCACT+GGG | 0.495007 | 7.4:-7744887 | None:intergenic |
| CACCAAAAGACTTTATTGGC+TGG | 0.495682 | 7.4:+7744948 | MS.gene051762:CDS |
| CTGAGCGACAGAGGTTGGCT+AGG | 0.495793 | 7.4:+7744503 | MS.gene051762:CDS |
| TGAGCGACAGAGGTTGGCTA+GGG | 0.496901 | 7.4:+7744504 | MS.gene051762:CDS |
| CCAACCTCCGCCAGTCCTGC+CGG | 0.497826 | 7.4:-7744208 | None:intergenic |
| CCAGTGAGCAGTGTCGTGAC+AGG | 0.497864 | 7.4:+7744888 | MS.gene051762:CDS |
| CGTGTTTGCTATACAAAAGA+TGG | 0.502296 | 7.4:+7744170 | MS.gene051762:CDS |
| CTATAAGCACGTGTTATCCT+GGG | 0.505414 | 7.4:+7744390 | MS.gene051762:CDS |
| CAGGACTGGCGGAGGTTGGA+CGG | 0.511557 | 7.4:+7744212 | MS.gene051762:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.4:+7744006 | MS.gene051762:CDS |
| CCGGCAGGACTGGCGGAGGT+TGG | 0.523905 | 7.4:+7744208 | MS.gene051762:CDS |
| ATTGTCTGAGCGACAGAGGT+TGG | 0.524197 | 7.4:+7744498 | MS.gene051762:CDS |
| CAAGACTTCAGCAGGGAGAT+CGG | 0.525981 | 7.4:-7743940 | None:intergenic |
| CATTCTAGGACTTACGTCAC+TGG | 0.528125 | 7.4:+7744776 | MS.gene051762:CDS |
| TTGGTTATTGCTAAACCGGC+AGG | 0.529301 | 7.4:+7744193 | MS.gene051762:CDS |
| CGTGATCAGATCCCTAGTAA+AGG | 0.536285 | 7.4:-7744261 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 7.4:-7744318 | None:intergenic |
| TCACGCTGCCAAAGTTTGAC+AGG | 0.539518 | 7.4:+7744279 | MS.gene051762:CDS |
| GTCACTGGAATAATGAGAAA+CGG | 0.542182 | 7.4:+7744791 | MS.gene051762:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.542919 | 7.4:+7744699 | MS.gene051762:CDS |
| TCTGCTAAGCATTTGGGCGG+AGG | 0.544418 | 7.4:-7744569 | None:intergenic |
| CAACATTCTTCGCATGATGT+CGG | 0.545714 | 7.4:+7743318 | MS.gene051762:CDS |
| TTTGCTATACAAAAGATGGT+TGG | 0.546454 | 7.4:+7744174 | MS.gene051762:CDS |
| CATCCAACTCTGGCAACTCA+AGG | 0.553068 | 7.4:-7744142 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.4:-7744068 | None:intergenic |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.4:+7744706 | MS.gene051762:CDS |
| TGCTAAACCGGCAGGACTGG+CGG | 0.569550 | 7.4:+7744201 | MS.gene051762:CDS |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.4:+7743884 | MS.gene051762:CDS |
| ACACGACATCCATCCAACTC+TGG | 0.576746 | 7.4:-7744152 | None:intergenic |
| ATAACACATCCAGTTGATGT+TGG | 0.578438 | 7.4:-7744332 | None:intergenic |
| CTTGTCTCGGTTGGATGTTG+GGG | 0.581584 | 7.4:+7743971 | MS.gene051762:CDS |
| ATCCAACTCTGGCAACTCAA+GGG | 0.590798 | 7.4:-7744141 | None:intergenic |
| TAAACCGGCAGGACTGGCGG+AGG | 0.593956 | 7.4:+7744204 | MS.gene051762:CDS |
| ACAGTCCAAGTACGTTCAAG+TGG | 0.603382 | 7.4:-7744536 | None:intergenic |
| CAATTTGGAGCTGCAAACAT+GGG | 0.606485 | 7.4:+7743917 | MS.gene051762:CDS |
| GCTCACTGGGATGATATCTA+CGG | 0.610400 | 7.4:-7744874 | None:intergenic |
| ACATTCTTCGCATGATGTCG+GGG | 0.620719 | 7.4:+7743320 | MS.gene051762:CDS |
| CAGTGAGCAGTGTCGTGACA+GGG | 0.621223 | 7.4:+7744889 | MS.gene051762:CDS |
| GTTGACTACACGTAAAGAAG+TGG | 0.629678 | 7.4:-7744039 | None:intergenic |
| AATAGGTCTTACGCTGCACA+GGG | 0.638547 | 7.4:-7744118 | None:intergenic |
| CTCTCTGCTAAGCATTTGGG+CGG | 0.648219 | 7.4:-7744572 | None:intergenic |
| TTTGTAGTTTATATATGTTG+TGG | 0.650518 | 7.4:+7744653 | MS.gene051762:CDS |
| AGTTTATATATGTTGTGGTG+AGG | 0.651124 | 7.4:+7744658 | MS.gene051762:CDS |
| GAGCGACAGAGGTTGGCTAG+GGG | 0.671202 | 7.4:+7744505 | MS.gene051762:CDS |
| GTGTAGTCAACCAATCACCT+TGG | 0.672007 | 7.4:+7744051 | MS.gene051762:CDS |
| CAGTCCAAGTACGTTCAAGT+GGG | 0.682692 | 7.4:-7744535 | None:intergenic |
| GACCACTGTTAATTATGACG+CGG | 0.704466 | 7.4:+7744424 | MS.gene051762:CDS |
| TATAAGCACGTGTTATCCTG+GGG | 0.707016 | 7.4:+7744391 | MS.gene051762:CDS |
| ACAATTCCAAGACTTCAGCA+GGG | 0.713188 | 7.4:-7743947 | None:intergenic |
| TACCGCGTCATAATTAACAG+TGG | 0.732690 | 7.4:-7744426 | None:intergenic |
| AAATTTATGATAGAGCACAA+AGG | 0.741593 | 7.4:+7744623 | MS.gene051762:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATTATTATTATTGCTA+GGG | + | chr7.4:7743406-7743425 | MS.gene051762:intron | 15.0% |
| !! | AGCAATAATAATAATATGTA+TGG | - | chr7.4:7743405-7743424 | None:intergenic | 15.0% |
| !! | CAATAATAATAATATGTATG+GGG | - | chr7.4:7743403-7743422 | None:intergenic | 15.0% |
| !! | GCAATAATAATAATATGTAT+GGG | - | chr7.4:7743404-7743423 | None:intergenic | 15.0% |
| !! | TACATATTATTATTATTGCT+AGG | + | chr7.4:7743405-7743424 | MS.gene051762:intron | 15.0% |
| !! | TTTAGATTGATAAACATATT+TGG | + | chr7.4:7743728-7743747 | MS.gene051762:intron | 15.0% |
| !!! | AATTTTGTTCAACAATTAAT+TGG | + | chr7.4:7743450-7743469 | MS.gene051762:intron | 15.0% |
| !! | AGATCTAACTTGAAAATTAT+TGG | - | chr7.4:7744686-7744705 | None:intergenic | 20.0% |
| !! | GATCTAACTTGAAAATTATT+GGG | - | chr7.4:7744685-7744704 | None:intergenic | 20.0% |
| !! | GTTTCATCTATATTTCATAT+TGG | + | chr7.4:7743579-7743598 | MS.gene051762:intron | 20.0% |
| !! | TATGATTTCTATATCCAATT+CGG | + | chr7.4:7743543-7743562 | MS.gene051762:intron | 20.0% |
| !! | TTTGTAGTTTATATATGTTG+TGG | + | chr7.4:7744653-7744672 | MS.gene051762:CDS | 20.0% |
| !!! | TCAATTTTTTGGCTTAATAA+TGG | + | chr7.4:7743484-7743503 | MS.gene051762:intron | 20.0% |
| ! | AAATTTATGATAGAGCACAA+AGG | + | chr7.4:7744623-7744642 | MS.gene051762:CDS | 25.0% |
| ! | AGATTGATAAACATATTTGG+TGG | + | chr7.4:7743731-7743750 | MS.gene051762:intron | 25.0% |
| ! | ATAATAATATGTATGGGGTT+AGG | - | chr7.4:7743398-7743417 | None:intergenic | 25.0% |
| ! | CATGAAAAATTTAACCGAAT+TGG | - | chr7.4:7743560-7743579 | None:intergenic | 25.0% |
| ! | CTTATGTATTTCCCAAAAAA+GGG | + | chr7.4:7744074-7744093 | MS.gene051762:CDS | 25.0% |
| ! | GATTGATAAACATATTTGGT+GGG | + | chr7.4:7743732-7743751 | MS.gene051762:intron | 25.0% |
| ! | TAGTTAATTCACAATAAAGC+TGG | - | chr7.4:7743616-7743635 | None:intergenic | 25.0% |
| !! | ATAAGCTTGTCTTTTCTAAT+GGG | + | chr7.4:7744468-7744487 | MS.gene051762:CDS | 25.0% |
| !! | ATATTAATTTTCAGACGTGT+TGG | + | chr7.4:7744353-7744372 | MS.gene051762:CDS | 25.0% |
| !!! | CATAACAATTACCCTTTTTT+GGG | - | chr7.4:7744088-7744107 | None:intergenic | 25.0% |
| !!! | CATTTTTAAGTTGATGATTG+TGG | + | chr7.4:7743637-7743656 | MS.gene051762:intron | 25.0% |
| !!! | TCATAACAATTACCCTTTTT+TGG | - | chr7.4:7744089-7744108 | None:intergenic | 25.0% |
| !!! | TTGCACTAACTTCAATTTTT+TGG | + | chr7.4:7743473-7743492 | MS.gene051762:intron | 25.0% |
| AAAAAATGAAGTTAGCTAGC+AGG | - | chr7.4:7743799-7743818 | None:intergenic | 30.0% | |
| AGTTTATATATGTTGTGGTG+AGG | + | chr7.4:7744658-7744677 | MS.gene051762:CDS | 30.0% | |
| GCTTATGTATTTCCCAAAAA+AGG | + | chr7.4:7744073-7744092 | MS.gene051762:CDS | 30.0% | |
| TCTCTTTAATCCCTTTACTA+GGG | + | chr7.4:7744250-7744269 | MS.gene051762:CDS | 30.0% | |
| TGAGGTAAAAAGCAACAATT+TGG | + | chr7.4:7743902-7743921 | MS.gene051762:CDS | 30.0% | |
| TTGTTGAACAAAATTGAGAG+TGG | - | chr7.4:7743445-7743464 | None:intergenic | 30.0% | |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | + | chr7.4:7744467-7744486 | MS.gene051762:CDS | 30.0% |
| ! | TTTGCTATACAAAAGATGGT+TGG | + | chr7.4:7744174-7744193 | MS.gene051762:CDS | 30.0% |
| !! | CAAATACTTTTGAGAACTTC+TGG | + | chr7.4:7744918-7744937 | MS.gene051762:CDS | 30.0% |
| !! | CAGAAGTTCTCAAAAGTATT+TGG | - | chr7.4:7744920-7744939 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | + | chr7.4:7744762-7744781 | MS.gene051762:CDS | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | - | chr7.4:7744064-7744083 | None:intergenic | 35.0% | |
| AATATGTATGGGGTTAGGTT+AGG | - | chr7.4:7743393-7743412 | None:intergenic | 35.0% | |
| AGTAAACAGAACAGAAACAG+TGG | - | chr7.4:7743694-7743713 | None:intergenic | 35.0% | |
| ATATGTATGGGGTTAGGTTA+GGG | - | chr7.4:7743392-7743411 | None:intergenic | 35.0% | |
| ATTCACAATAAAGCTGGTCA+TGG | - | chr7.4:7743610-7743629 | None:intergenic | 35.0% | |
| CAAGTTAGATCTGACACTAA+TGG | + | chr7.4:7744694-7744713 | MS.gene051762:CDS | 35.0% | |
| CTCTCTTTAATCCCTTTACT+AGG | + | chr7.4:7744249-7744268 | MS.gene051762:CDS | 35.0% | |
| GAACCACCAAAAGACTTTAT+TGG | + | chr7.4:7744944-7744963 | MS.gene051762:CDS | 35.0% | |
| GTAAACAGAACAGAAACAGT+GGG | - | chr7.4:7743693-7743712 | None:intergenic | 35.0% | |
| GTCACTGGAATAATGAGAAA+CGG | + | chr7.4:7744791-7744810 | MS.gene051762:CDS | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | + | chr7.4:7744699-7744718 | MS.gene051762:CDS | 35.0% | |
| TCTTGGAATTGTTCTTGTCT+CGG | + | chr7.4:7743958-7743977 | MS.gene051762:CDS | 35.0% | |
| TGATATGTCCTGTCAAACTT+TGG | - | chr7.4:7744290-7744309 | None:intergenic | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | - | chr7.4:7744071-7744090 | None:intergenic | 35.0% | |
| ! | ATAACACATCCAGTTGATGT+TGG | - | chr7.4:7744335-7744354 | None:intergenic | 35.0% |
| ! | ATCCAGCCAATAAAGTCTTT+TGG | - | chr7.4:7744953-7744972 | None:intergenic | 35.0% |
| ! | ATGGTTGGTTATTGCTAAAC+CGG | + | chr7.4:7744189-7744208 | MS.gene051762:CDS | 35.0% |
| ! | GATAAACATATTTGGTGGGA+TGG | + | chr7.4:7743736-7743755 | MS.gene051762:intron | 35.0% |
| ! | TGCAACGTTTTCCATAGAAA+CGG | - | chr7.4:7744835-7744854 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | - | chr7.4:7744826-7744845 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | - | chr7.4:7744827-7744846 | None:intergenic | 35.0% |
| !! | CGTGTTTGCTATACAAAAGA+TGG | + | chr7.4:7744170-7744189 | MS.gene051762:CDS | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | + | chr7.4:7744722-7744741 | MS.gene051762:CDS | 40.0% | |
| AACAATTCCAAGACTTCAGC+AGG | - | chr7.4:7743951-7743970 | None:intergenic | 40.0% | |
| AACATTCTTCGCATGATGTC+GGG | + | chr7.4:7743319-7743338 | MS.gene051762:CDS | 40.0% | |
| ACAATTCCAAGACTTCAGCA+GGG | - | chr7.4:7743950-7743969 | None:intergenic | 40.0% | |
| AGAACTCTCTGCTAAGCATT+TGG | - | chr7.4:7744579-7744598 | None:intergenic | 40.0% | |
| AGAGTTCTACTGCCAAAAAC+TGG | + | chr7.4:7744591-7744610 | MS.gene051762:CDS | 40.0% | |
| CAACATTCTTCGCATGATGT+CGG | + | chr7.4:7743318-7743337 | MS.gene051762:CDS | 40.0% | |
| CACCAAAAGACTTTATTGGC+TGG | + | chr7.4:7744948-7744967 | MS.gene051762:CDS | 40.0% | |
| CTATAAGCACGTGTTATCCT+GGG | + | chr7.4:7744390-7744409 | MS.gene051762:CDS | 40.0% | |
| GAACTCTCTGCTAAGCATTT+GGG | - | chr7.4:7744578-7744597 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | + | chr7.4:7744706-7744725 | MS.gene051762:CDS | 40.0% | |
| GACCACTGTTAATTATGACG+CGG | + | chr7.4:7744424-7744443 | MS.gene051762:CDS | 40.0% | |
| GTGATCAGATCCCTAGTAAA+GGG | - | chr7.4:7744263-7744282 | None:intergenic | 40.0% | |
| GTTATCCTGGGGAAAAAGAA+TGG | + | chr7.4:7744402-7744421 | MS.gene051762:CDS | 40.0% | |
| GTTGACTACACGTAAAGAAG+TGG | - | chr7.4:7744042-7744061 | None:intergenic | 40.0% | |
| TACCGCGTCATAATTAACAG+TGG | - | chr7.4:7744429-7744448 | None:intergenic | 40.0% | |
| TATAAGCACGTGTTATCCTG+GGG | + | chr7.4:7744391-7744410 | MS.gene051762:CDS | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | + | chr7.4:7744821-7744840 | MS.gene051762:CDS | 40.0% | |
| ! | ACAATTTGGAGCTGCAAACA+TGG | + | chr7.4:7743916-7743935 | MS.gene051762:CDS | 40.0% |
| ! | CAATTTGGAGCTGCAAACAT+GGG | + | chr7.4:7743917-7743936 | MS.gene051762:CDS | 40.0% |
| ! | CAGCCAATAAAGTCTTTTGG+TGG | - | chr7.4:7744950-7744969 | None:intergenic | 40.0% |
| ! | TTTTATTGTCTGAGCGACAG+AGG | + | chr7.4:7744494-7744513 | MS.gene051762:CDS | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | - | chr7.4:7744121-7744140 | None:intergenic | 45.0% | |
| ACAGTCCAAGTACGTTCAAG+TGG | - | chr7.4:7744539-7744558 | None:intergenic | 45.0% | |
| ACATTCTTCGCATGATGTCG+GGG | + | chr7.4:7743320-7743339 | MS.gene051762:CDS | 45.0% | |
| ACTGCCAAAAACTGGTCGAA+GGG | + | chr7.4:7744599-7744618 | MS.gene051762:CDS | 45.0% | |
| ATCCAACTCTGGCAACTCAA+GGG | - | chr7.4:7744144-7744163 | None:intergenic | 45.0% | |
| CAGTCCAAGTACGTTCAAGT+GGG | - | chr7.4:7744538-7744557 | None:intergenic | 45.0% | |
| CGTGATCAGATCCCTAGTAA+AGG | - | chr7.4:7744264-7744283 | None:intergenic | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | + | chr7.4:7744006-7744025 | MS.gene051762:CDS | 45.0% | |
| GCTATAAGCACGTGTTATCC+TGG | + | chr7.4:7744389-7744408 | MS.gene051762:CDS | 45.0% | |
| GCTCACTGGGATGATATCTA+CGG | - | chr7.4:7744877-7744896 | None:intergenic | 45.0% | |
| GGAATTGTTCTTGTCTCGGT+TGG | + | chr7.4:7743962-7743981 | MS.gene051762:CDS | 45.0% | |
| GTGTAGTCAACCAATCACCT+TGG | + | chr7.4:7744051-7744070 | MS.gene051762:CDS | 45.0% | |
| TACTGCCAAAAACTGGTCGA+AGG | + | chr7.4:7744598-7744617 | MS.gene051762:CDS | 45.0% | |
| TCTTGTCTCGGTTGGATGTT+GGG | + | chr7.4:7743970-7743989 | MS.gene051762:CDS | 45.0% | |
| TCTTGTGCTCCAACATCAAC+TGG | + | chr7.4:7744323-7744342 | MS.gene051762:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | - | chr7.4:7744321-7744340 | None:intergenic | 45.0% | |
| TTCTTGTCTCGGTTGGATGT+TGG | + | chr7.4:7743969-7743988 | MS.gene051762:CDS | 45.0% | |
| TTGACCCACTTGAACGTACT+TGG | + | chr7.4:7744531-7744550 | MS.gene051762:CDS | 45.0% | |
| TTGGTTATTGCTAAACCGGC+AGG | + | chr7.4:7744193-7744212 | MS.gene051762:CDS | 45.0% | |
| ! | TTTCCCCTTCGACCAGTTTT+TGG | - | chr7.4:7744606-7744625 | None:intergenic | 45.0% |
| !! | CATTCTAGGACTTACGTCAC+TGG | + | chr7.4:7744776-7744795 | MS.gene051762:CDS | 45.0% |
| ACACGACATCCATCCAACTC+TGG | - | chr7.4:7744155-7744174 | None:intergenic | 50.0% | |
| ATTGTCTGAGCGACAGAGGT+TGG | + | chr7.4:7744498-7744517 | MS.gene051762:CDS | 50.0% | |
| CAAGACTTCAGCAGGGAGAT+CGG | - | chr7.4:7743943-7743962 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | + | chr7.4:7743884-7743903 | MS.gene051762:CDS | 50.0% | |
| CATCCAACTCTGGCAACTCA+AGG | - | chr7.4:7744145-7744164 | None:intergenic | 50.0% | |
| CTCTCTGCTAAGCATTTGGG+CGG | - | chr7.4:7744575-7744594 | None:intergenic | 50.0% | |
| CTCTGGCAACTCAAGGGAAT+AGG | - | chr7.4:7744138-7744157 | None:intergenic | 50.0% | |
| CTGCCAAAAACTGGTCGAAG+GGG | + | chr7.4:7744600-7744619 | MS.gene051762:CDS | 50.0% | |
| CTTGTCTCGGTTGGATGTTG+GGG | + | chr7.4:7743971-7743990 | MS.gene051762:CDS | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | - | chr7.4:7744122-7744141 | None:intergenic | 50.0% | |
| TATTGCTAAACCGGCAGGAC+TGG | + | chr7.4:7744198-7744217 | MS.gene051762:CDS | 50.0% | |
| TCACGCTGCCAAAGTTTGAC+AGG | + | chr7.4:7744279-7744298 | MS.gene051762:CDS | 50.0% | |
| TTCGCATGATGTCGGGGAAA+AGG | + | chr7.4:7743326-7743345 | MS.gene051762:CDS | 50.0% | |
| ! | CTTGAGTTGCCAGAGTTGGA+TGG | + | chr7.4:7744143-7744162 | MS.gene051762:CDS | 50.0% |
| ! | GTGGTCCATTCTTTTTCCCC+AGG | - | chr7.4:7744410-7744429 | None:intergenic | 50.0% |
| ! | TTCCCTTGAGTTGCCAGAGT+TGG | + | chr7.4:7744139-7744158 | MS.gene051762:CDS | 50.0% |
| CAGTGAGCAGTGTCGTGACA+GGG | + | chr7.4:7744889-7744908 | MS.gene051762:CDS | 55.0% | |
| CGATCTCCCTGCTGAAGTCT+TGG | + | chr7.4:7743941-7743960 | MS.gene051762:CDS | 55.0% | |
| CTGTCACGACACTGCTCACT+GGG | - | chr7.4:7744890-7744909 | None:intergenic | 55.0% | |
| TCTGCTAAGCATTTGGGCGG+AGG | - | chr7.4:7744572-7744591 | None:intergenic | 55.0% | |
| ! | TGAGCGACAGAGGTTGGCTA+GGG | + | chr7.4:7744504-7744523 | MS.gene051762:CDS | 55.0% |
| CCAGTGAGCAGTGTCGTGAC+AGG | + | chr7.4:7744888-7744907 | MS.gene051762:CDS | 60.0% | |
| CCTGTCACGACACTGCTCAC+TGG | - | chr7.4:7744891-7744910 | None:intergenic | 60.0% | |
| TGCTAAACCGGCAGGACTGG+CGG | + | chr7.4:7744201-7744220 | MS.gene051762:CDS | 60.0% | |
| ! | CTGAGCGACAGAGGTTGGCT+AGG | + | chr7.4:7744503-7744522 | MS.gene051762:CDS | 60.0% |
| ! | GAGCGACAGAGGTTGGCTAG+GGG | + | chr7.4:7744505-7744524 | MS.gene051762:CDS | 60.0% |
| ! | CAGGACTGGCGGAGGTTGGA+CGG | + | chr7.4:7744212-7744231 | MS.gene051762:CDS | 65.0% |
| ! | TAAACCGGCAGGACTGGCGG+AGG | + | chr7.4:7744204-7744223 | MS.gene051762:CDS | 65.0% |
| CCAACCTCCGCCAGTCCTGC+CGG | - | chr7.4:7744211-7744230 | None:intergenic | 70.0% | |
| ! | CCGGCAGGACTGGCGGAGGT+TGG | + | chr7.4:7744208-7744227 | MS.gene051762:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 7743301 | 7744976 | 7743301 | ID=MS.gene051762 |
| chr7.4 | mRNA | 7743301 | 7744976 | 7743301 | ID=MS.gene051762.t1;Parent=MS.gene051762 |
| chr7.4 | exon | 7743301 | 7743368 | 7743301 | ID=MS.gene051762.t1.exon1;Parent=MS.gene051762.t1 |
| chr7.4 | CDS | 7743301 | 7743368 | 7743301 | ID=cds.MS.gene051762.t1;Parent=MS.gene051762.t1 |
| chr7.4 | exon | 7743875 | 7744976 | 7743875 | ID=MS.gene051762.t1.exon2;Parent=MS.gene051762.t1 |
| chr7.4 | CDS | 7743875 | 7744976 | 7743875 | ID=cds.MS.gene051762.t1;Parent=MS.gene051762.t1 |
| Gene Sequence |
| Protein sequence |
