Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24686.t1 | AES82055.2 | 95.5 | 379 | 15 | 1 | 1 | 379 | 25 | 401 | 6.00E-220 | 773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24686.t1 | Q9FVS1 | 44.8 | 355 | 182 | 6 | 24 | 374 | 3 | 347 | 2.8e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24686.t1 | A0A072U447 | 95.5 | 379 | 15 | 1 | 1 | 379 | 1 | 377 | 4.3e-220 | 773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050306 | MS.gene24686 | 0.981146 | 6.97E-152 | -1.69E-46 |
| MS.gene051762 | MS.gene24686 | 0.829359 | 5.38E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene24686 | 0.810437 | 1.15E-50 | -1.69E-46 |
| MS.gene058634 | MS.gene24686 | 0.816632 | 5.00E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene24686 | 0.804796 | 1.82E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene24686 | 0.815861 | 7.44E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03004 | MS.gene24686 | PPI |
| MS.gene24686 | MS.gene024343 | PPI |
| MS.gene24686 | MS.gene75065 | PPI |
| MS.gene24686 | MS.gene98671 | PPI |
| MS.gene24686 | MS.gene05311 | PPI |
| MS.gene24686 | MS.gene064044 | PPI |
| MS.gene24686 | MS.gene42889 | PPI |
| MS.gene24686 | MS.gene005636 | PPI |
| MS.gene24686 | MS.gene53925 | PPI |
| MS.gene24686 | MS.gene59977 | PPI |
| MS.gene24686 | MS.gene012753 | PPI |
| MS.gene95088 | MS.gene24686 | PPI |
| MS.gene98670 | MS.gene24686 | PPI |
| MS.gene24686 | MS.gene98673 | PPI |
| MS.gene24686 | MS.gene67877 | PPI |
| MS.gene24686 | MS.gene024341 | PPI |
| MS.gene24686 | MS.gene43440 | PPI |
| MS.gene24686 | MS.gene47120 | PPI |
| MS.gene24686 | MS.gene42887 | PPI |
| MS.gene24686 | MS.gene42893 | PPI |
| MS.gene75067 | MS.gene24686 | PPI |
| MS.gene24686 | MS.gene42891 | PPI |
| MS.gene24686 | MS.gene071037 | PPI |
| MS.gene24686 | MS.gene024275 | PPI |
| MS.gene071039 | MS.gene24686 | PPI |
| MS.gene24686 | MS.gene009311 | PPI |
| MS.gene24686 | MS.gene33922 | PPI |
| MS.gene52540 | MS.gene24686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24686.t1 | MTR_7g104790 | 95.515 | 379 | 15 | 1 | 1 | 379 | 25 | 401 | 0.0 | 727 |
| MS.gene24686.t1 | MTR_7g104790 | 95.515 | 379 | 15 | 1 | 1 | 379 | 1 | 377 | 0.0 | 725 |
| MS.gene24686.t1 | MTR_7g104785 | 80.992 | 363 | 54 | 3 | 16 | 375 | 17 | 367 | 0.0 | 590 |
| MS.gene24686.t1 | MTR_1g059840 | 64.042 | 381 | 125 | 6 | 2 | 377 | 1 | 374 | 6.84e-173 | 487 |
| MS.gene24686.t1 | MTR_7g104760 | 70.629 | 143 | 25 | 1 | 215 | 357 | 14 | 139 | 2.25e-66 | 207 |
| MS.gene24686.t1 | MTR_2g034630 | 25.000 | 348 | 181 | 14 | 35 | 371 | 73 | 351 | 2.87e-15 | 76.6 |
| MS.gene24686.t1 | MTR_3g114970 | 25.826 | 333 | 185 | 14 | 34 | 329 | 5 | 312 | 1.02e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24686.t1 | AT1G57790 | 44.789 | 355 | 182 | 6 | 24 | 374 | 3 | 347 | 3.33e-101 | 303 |
| MS.gene24686.t1 | AT3G56470 | 41.880 | 351 | 179 | 7 | 32 | 376 | 27 | 358 | 3.83e-82 | 255 |
| MS.gene24686.t1 | AT4G00893 | 39.489 | 352 | 198 | 8 | 33 | 378 | 44 | 386 | 2.00e-79 | 249 |
| MS.gene24686.t1 | AT4G10660 | 41.000 | 300 | 161 | 6 | 62 | 354 | 3 | 293 | 8.81e-68 | 217 |
| MS.gene24686.t1 | AT4G12370 | 38.835 | 309 | 170 | 8 | 81 | 379 | 1 | 300 | 1.43e-67 | 216 |
| MS.gene24686.t1 | AT1G49360 | 34.527 | 391 | 213 | 15 | 8 | 372 | 61 | 434 | 6.78e-52 | 179 |
| MS.gene24686.t1 | AT1G49360 | 34.527 | 391 | 213 | 15 | 8 | 372 | 84 | 457 | 1.27e-51 | 179 |
| MS.gene24686.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.72e-51 | 176 |
| MS.gene24686.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.72e-51 | 176 |
| MS.gene24686.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.72e-51 | 176 |
| MS.gene24686.t1 | AT3G18720 | 34.085 | 355 | 189 | 11 | 36 | 374 | 51 | 376 | 2.29e-50 | 173 |
| MS.gene24686.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 3.79e-48 | 163 |
| MS.gene24686.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 3.79e-48 | 163 |
| MS.gene24686.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 1.34e-35 | 127 |
| MS.gene24686.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 1.34e-35 | 127 |
| MS.gene24686.t1 | AT2G44735 | 40.260 | 154 | 78 | 5 | 139 | 288 | 109 | 252 | 5.65e-23 | 99.4 |
| MS.gene24686.t1 | AT4G10700 | 41.270 | 126 | 66 | 3 | 258 | 376 | 119 | 243 | 1.17e-20 | 90.5 |
| MS.gene24686.t1 | AT4G10700 | 47.312 | 93 | 43 | 2 | 62 | 154 | 3 | 89 | 3.97e-20 | 89.0 |
Find 88 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTAACTTGAAAATTAT+TGG | 0.158009 | 7.3:+9726311 | None:intergenic |
| GAACCACCAAAAGACTTTAT+TGG | 0.163822 | 7.3:-9726050 | MS.gene24686:CDS |
| CAGAAGTTCTCAAAAGTATT+TGG | 0.184683 | 7.3:+9726077 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.3:-9726173 | MS.gene24686:CDS |
| TTTCCATAGAAACGGACTTT+AGG | 0.272121 | 7.3:+9726170 | None:intergenic |
| GATCTAACTTGAAAATTATT+GGG | 0.325599 | 7.3:+9726312 | None:intergenic |
| CTCTCTTTAATCCCTTTACT+AGG | 0.326943 | 7.3:-9726745 | MS.gene24686:CDS |
| CAAGTTAGATCTGACACTAA+TGG | 0.329403 | 7.3:-9726300 | MS.gene24686:CDS |
| ATCCAGCCAATAAAGTCTTT+TGG | 0.339525 | 7.3:+9726044 | None:intergenic |
| AGAACTCTCTGCTAAGCATT+TGG | 0.351257 | 7.3:+9726418 | None:intergenic |
| TTGACCCACTTGAACGTACT+TGG | 0.354769 | 7.3:-9726463 | MS.gene24686:CDS |
| TTCCATAGAAACGGACTTTA+GGG | 0.361226 | 7.3:+9726171 | None:intergenic |
| AACATTCTTCGCATGATGTC+GGG | 0.375799 | 7.3:-9727675 | None:intergenic |
| TCTTGTCTCGGTTGGATGTT+GGG | 0.383783 | 7.3:-9727024 | MS.gene24686:CDS |
| GCTATAAGCACGTGTTATCC+TGG | 0.393896 | 7.3:-9726605 | MS.gene24686:CDS |
| TCTTGTGCTCCAACATCAAC+TGG | 0.401697 | 7.3:-9726671 | MS.gene24686:CDS |
| GAACTCTCTGCTAAGCATTT+GGG | 0.407425 | 7.3:+9726419 | None:intergenic |
| ATGGTTGGTTATTGCTAAAC+CGG | 0.409750 | 7.3:-9726805 | MS.gene24686:CDS |
| GGAATTGTTCTTGTCTCGGT+TGG | 0.421431 | 7.3:-9727032 | MS.gene24686:CDS |
| TTCCCTTGAGTTGCCAGAGT+TGG | 0.426018 | 7.3:-9726855 | MS.gene24686:CDS |
| AACAATTCCAAGACTTCAGC+AGG | 0.429634 | 7.3:+9727046 | None:intergenic |
| TTCTTGTCTCGGTTGGATGT+TGG | 0.436225 | 7.3:-9727025 | MS.gene24686:CDS |
| TCTTGGAATTGTTCTTGTCT+CGG | 0.438217 | 7.3:-9727036 | MS.gene24686:CDS |
| TATTGCTAAACCGGCAGGAC+TGG | 0.447316 | 7.3:-9726796 | MS.gene24686:CDS |
| ACAATTTGGAGCTGCAAACA+TGG | 0.451046 | 7.3:-9727078 | MS.gene24686:CDS |
| TTCGCATGATGTCGGGGAAA+AGG | 0.455236 | 7.3:-9727668 | None:intergenic |
| CTCTGGCAACTCAAGGGAAT+AGG | 0.460842 | 7.3:+9726859 | None:intergenic |
| CGATCTCCCTGCTGAAGTCT+TGG | 0.469551 | 7.3:-9727053 | MS.gene24686:CDS |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.3:-9726272 | MS.gene24686:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.470767 | 7.3:+9726875 | None:intergenic |
| TCTCTTTAATCCCTTTACTA+GGG | 0.471216 | 7.3:-9726744 | MS.gene24686:CDS |
| TGATATGTCCTGTCAAACTT+TGG | 0.477303 | 7.3:+9726707 | None:intergenic |
| AATACATAAGCCAAGGTGAT+TGG | 0.482476 | 7.3:+9726933 | None:intergenic |
| CTTGAGTTGCCAGAGTTGGA+TGG | 0.483726 | 7.3:-9726851 | MS.gene24686:CDS |
| CCTGTCACGACACTGCTCAC+TGG | 0.484710 | 7.3:+9726106 | None:intergenic |
| GTGATCAGATCCCTAGTAAA+GGG | 0.491655 | 7.3:+9726734 | None:intergenic |
| CTGTCACGACACTGCTCACT+GGG | 0.495007 | 7.3:+9726107 | None:intergenic |
| CACCAAAAGACTTTATTGGC+TGG | 0.495682 | 7.3:-9726046 | MS.gene24686:CDS |
| CTGAGCGACAGAGGTTGGCT+AGG | 0.495793 | 7.3:-9726491 | MS.gene24686:CDS |
| TGAGCGACAGAGGTTGGCTA+GGG | 0.496901 | 7.3:-9726490 | MS.gene24686:CDS |
| CCAACCTCCGCCAGTCCTGC+CGG | 0.497826 | 7.3:+9726786 | None:intergenic |
| CCAGTGAGCAGTGTCGTGAC+AGG | 0.497864 | 7.3:-9726106 | MS.gene24686:CDS |
| CGTGTTTGCTATACAAAAGA+TGG | 0.502296 | 7.3:-9726824 | MS.gene24686:CDS |
| CTATAAGCACGTGTTATCCT+GGG | 0.505414 | 7.3:-9726604 | MS.gene24686:CDS |
| CAGGACTGGCGGAGGTTGGA+CGG | 0.511557 | 7.3:-9726782 | MS.gene24686:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.3:-9726988 | MS.gene24686:CDS |
| CCGGCAGGACTGGCGGAGGT+TGG | 0.523905 | 7.3:-9726786 | MS.gene24686:CDS |
| ATTGTCTGAGCGACAGAGGT+TGG | 0.524197 | 7.3:-9726496 | MS.gene24686:CDS |
| CAAGACTTCAGCAGGGAGAT+CGG | 0.525981 | 7.3:+9727054 | None:intergenic |
| CATTCTAGGACTTACGTCAC+TGG | 0.528125 | 7.3:-9726218 | MS.gene24686:CDS |
| TTGGTTATTGCTAAACCGGC+AGG | 0.529301 | 7.3:-9726801 | MS.gene24686:CDS |
| CGTGATCAGATCCCTAGTAA+AGG | 0.536285 | 7.3:+9726733 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 7.3:+9726676 | None:intergenic |
| TCACGCTGCCAAAGTTTGAC+AGG | 0.539518 | 7.3:-9726715 | MS.gene24686:CDS |
| GTCACTGGAATAATGAGAAA+CGG | 0.542182 | 7.3:-9726203 | MS.gene24686:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.542919 | 7.3:-9726295 | MS.gene24686:CDS |
| TCTGCTAAGCATTTGGGCGG+AGG | 0.544418 | 7.3:+9726425 | None:intergenic |
| CAACATTCTTCGCATGATGT+CGG | 0.545714 | 7.3:-9727676 | None:intergenic |
| TTTGCTATACAAAAGATGGT+TGG | 0.546454 | 7.3:-9726820 | MS.gene24686:CDS |
| CATCCAACTCTGGCAACTCA+AGG | 0.553068 | 7.3:+9726852 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.3:+9726926 | None:intergenic |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.3:-9726288 | MS.gene24686:CDS |
| TGCTAAACCGGCAGGACTGG+CGG | 0.569550 | 7.3:-9726793 | MS.gene24686:CDS |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.3:-9727110 | MS.gene24686:CDS |
| ACACGACATCCATCCAACTC+TGG | 0.576746 | 7.3:+9726842 | None:intergenic |
| ATAACACATCCAGTTGATGT+TGG | 0.578438 | 7.3:+9726662 | None:intergenic |
| CTTGTCTCGGTTGGATGTTG+GGG | 0.581584 | 7.3:-9727023 | MS.gene24686:CDS |
| ATCCAACTCTGGCAACTCAA+GGG | 0.590798 | 7.3:+9726853 | None:intergenic |
| TAAACCGGCAGGACTGGCGG+AGG | 0.593956 | 7.3:-9726790 | MS.gene24686:CDS |
| ACAGTCCAAGTACGTTCAAG+TGG | 0.603382 | 7.3:+9726458 | None:intergenic |
| CAATTTGGAGCTGCAAACAT+GGG | 0.606485 | 7.3:-9727077 | MS.gene24686:CDS |
| GCTCACTGGGATGATATCTA+CGG | 0.610400 | 7.3:+9726120 | None:intergenic |
| GTCGACTACACGTAAAGAAG+TGG | 0.612484 | 7.3:+9726955 | None:intergenic |
| ACATTCTTCGCATGATGTCG+GGG | 0.620719 | 7.3:-9727674 | None:intergenic |
| CAGTGAGCAGTGTCGTGACA+GGG | 0.621223 | 7.3:-9726105 | MS.gene24686:CDS |
| TCTTGCAAACAGCTGAAGCA+CGG | 0.621405 | 7.3:+9726993 | None:intergenic |
| AATAGGTCTTACGCTGCACA+GGG | 0.638547 | 7.3:+9726876 | None:intergenic |
| CTCTCTGCTAAGCATTTGGG+CGG | 0.648219 | 7.3:+9726422 | None:intergenic |
| TTTGTAGTTTATATATGTTG+TGG | 0.650518 | 7.3:-9726341 | MS.gene24686:CDS |
| AGTTTATATATGTTGTGGTG+AGG | 0.651124 | 7.3:-9726336 | MS.gene24686:CDS |
| GAGCGACAGAGGTTGGCTAG+GGG | 0.671202 | 7.3:-9726489 | MS.gene24686:CDS |
| CAGTCCAAGTACGTTCAAGT+GGG | 0.682692 | 7.3:+9726459 | None:intergenic |
| GACCACTGTTAATTATGACG+CGG | 0.704466 | 7.3:-9726570 | MS.gene24686:CDS |
| TATAAGCACGTGTTATCCTG+GGG | 0.707016 | 7.3:-9726603 | MS.gene24686:CDS |
| ACAATTCCAAGACTTCAGCA+GGG | 0.713188 | 7.3:+9727047 | None:intergenic |
| GTGTAGTCGACCAATCACCT+TGG | 0.718766 | 7.3:-9726943 | MS.gene24686:CDS |
| TACCGCGTCATAATTAACAG+TGG | 0.732690 | 7.3:+9726568 | None:intergenic |
| AAATTTATGATAGAGCACAA+AGG | 0.741593 | 7.3:-9726371 | MS.gene24686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATTATTATTATTGCTA+GGG | - | chr7.3:9726115-9726134 | MS.gene24686:CDS | 15.0% |
| !! | AGCAATAATAATAATATGTA+TGG | + | chr7.3:9726114-9726133 | None:intergenic | 15.0% |
| !! | CAATAATAATAATATGTATG+GGG | + | chr7.3:9726112-9726131 | None:intergenic | 15.0% |
| !! | GCAATAATAATAATATGTAT+GGG | + | chr7.3:9726113-9726132 | None:intergenic | 15.0% |
| !! | TACATATTATTATTATTGCT+AGG | - | chr7.3:9726114-9726133 | MS.gene24686:CDS | 15.0% |
| !! | TTTAGATTGATAAACATATT+TGG | - | chr7.3:9726437-9726456 | MS.gene24686:CDS | 15.0% |
| !!! | AATTTTGTTCAACAATTAAT+TGG | - | chr7.3:9726159-9726178 | MS.gene24686:CDS | 15.0% |
| !! | AGATCTAACTTGAAAATTAT+TGG | + | chr7.3:9727395-9727414 | None:intergenic | 20.0% |
| !! | GATCTAACTTGAAAATTATT+GGG | + | chr7.3:9727394-9727413 | None:intergenic | 20.0% |
| !! | GTTTCATCTATATTTCATAT+TGG | - | chr7.3:9726288-9726307 | MS.gene24686:CDS | 20.0% |
| !! | TATGATTTCTATATCCAATT+CGG | - | chr7.3:9726252-9726271 | MS.gene24686:CDS | 20.0% |
| !! | TTTGTAGTTTATATATGTTG+TGG | - | chr7.3:9727362-9727381 | MS.gene24686:intron | 20.0% |
| !!! | TCAATTTTTTGGCTTAATAA+TGG | - | chr7.3:9726193-9726212 | MS.gene24686:CDS | 20.0% |
| ! | AAATTTATGATAGAGCACAA+AGG | - | chr7.3:9727332-9727351 | MS.gene24686:intron | 25.0% |
| ! | AGATTGATAAACATATTTGG+TGG | - | chr7.3:9726440-9726459 | MS.gene24686:CDS | 25.0% |
| ! | ATAATAATATGTATGGGGTT+AGG | + | chr7.3:9726107-9726126 | None:intergenic | 25.0% |
| ! | CATGAAAAATTTAACCGAAT+TGG | + | chr7.3:9726269-9726288 | None:intergenic | 25.0% |
| ! | CTTATGTATTTCCCAAAAAA+GGG | - | chr7.3:9726783-9726802 | MS.gene24686:CDS | 25.0% |
| ! | GATTGATAAACATATTTGGT+GGG | - | chr7.3:9726441-9726460 | MS.gene24686:CDS | 25.0% |
| ! | TAGTTAATTCACAATAAAGC+TGG | + | chr7.3:9726325-9726344 | None:intergenic | 25.0% |
| !! | ATAAGCTTGTCTTTTCTAAT+GGG | - | chr7.3:9727177-9727196 | MS.gene24686:intron | 25.0% |
| !! | ATATTAATTTTCAGACGTGT+TGG | - | chr7.3:9727062-9727081 | MS.gene24686:CDS | 25.0% |
| !!! | CATAACAATTACCCTTTTTT+GGG | + | chr7.3:9726797-9726816 | None:intergenic | 25.0% |
| !!! | CATTTTTAAGTTGATGATTG+TGG | - | chr7.3:9726346-9726365 | MS.gene24686:CDS | 25.0% |
| !!! | TCATAACAATTACCCTTTTT+TGG | + | chr7.3:9726798-9726817 | None:intergenic | 25.0% |
| !!! | TTGCACTAACTTCAATTTTT+TGG | - | chr7.3:9726182-9726201 | MS.gene24686:CDS | 25.0% |
| AAAAAATGAAGTTAGCTAGC+AGG | + | chr7.3:9726508-9726527 | None:intergenic | 30.0% | |
| AGTTTATATATGTTGTGGTG+AGG | - | chr7.3:9727367-9727386 | MS.gene24686:intron | 30.0% | |
| GCTTATGTATTTCCCAAAAA+AGG | - | chr7.3:9726782-9726801 | MS.gene24686:CDS | 30.0% | |
| TCTCTTTAATCCCTTTACTA+GGG | - | chr7.3:9726959-9726978 | MS.gene24686:CDS | 30.0% | |
| TGAGGTAAAAAGCAACAATT+TGG | - | chr7.3:9726611-9726630 | MS.gene24686:CDS | 30.0% | |
| TTGTTGAACAAAATTGAGAG+TGG | + | chr7.3:9726154-9726173 | None:intergenic | 30.0% | |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr7.3:9727176-9727195 | MS.gene24686:intron | 30.0% |
| ! | TTTGCTATACAAAAGATGGT+TGG | - | chr7.3:9726883-9726902 | MS.gene24686:CDS | 30.0% |
| !! | CAAATACTTTTGAGAACTTC+TGG | - | chr7.3:9727627-9727646 | MS.gene24686:intron | 30.0% |
| !! | CAGAAGTTCTCAAAAGTATT+TGG | + | chr7.3:9727629-9727648 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr7.3:9727471-9727490 | MS.gene24686:intron | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.3:9726773-9726792 | None:intergenic | 35.0% | |
| AATATGTATGGGGTTAGGTT+AGG | + | chr7.3:9726102-9726121 | None:intergenic | 35.0% | |
| AGTAAACAGAACAGAAACAG+TGG | + | chr7.3:9726403-9726422 | None:intergenic | 35.0% | |
| ATATGTATGGGGTTAGGTTA+GGG | + | chr7.3:9726101-9726120 | None:intergenic | 35.0% | |
| ATTCACAATAAAGCTGGTCA+TGG | + | chr7.3:9726319-9726338 | None:intergenic | 35.0% | |
| CAAGTTAGATCTGACACTAA+TGG | - | chr7.3:9727403-9727422 | MS.gene24686:intron | 35.0% | |
| CTCTCTTTAATCCCTTTACT+AGG | - | chr7.3:9726958-9726977 | MS.gene24686:CDS | 35.0% | |
| GAACCACCAAAAGACTTTAT+TGG | - | chr7.3:9727653-9727672 | MS.gene24686:CDS | 35.0% | |
| GTAAACAGAACAGAAACAGT+GGG | + | chr7.3:9726402-9726421 | None:intergenic | 35.0% | |
| GTCACTGGAATAATGAGAAA+CGG | - | chr7.3:9727500-9727519 | MS.gene24686:intron | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr7.3:9727408-9727427 | MS.gene24686:intron | 35.0% | |
| TCTTGGAATTGTTCTTGTCT+CGG | - | chr7.3:9726667-9726686 | MS.gene24686:CDS | 35.0% | |
| TGATATGTCCTGTCAAACTT+TGG | + | chr7.3:9726999-9727018 | None:intergenic | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr7.3:9726780-9726799 | None:intergenic | 35.0% | |
| ! | ATAACACATCCAGTTGATGT+TGG | + | chr7.3:9727044-9727063 | None:intergenic | 35.0% |
| ! | ATCCAGCCAATAAAGTCTTT+TGG | + | chr7.3:9727662-9727681 | None:intergenic | 35.0% |
| ! | ATGGTTGGTTATTGCTAAAC+CGG | - | chr7.3:9726898-9726917 | MS.gene24686:CDS | 35.0% |
| ! | GATAAACATATTTGGTGGGA+TGG | - | chr7.3:9726445-9726464 | MS.gene24686:CDS | 35.0% |
| ! | TGCAACGTTTTCCATAGAAA+CGG | + | chr7.3:9727544-9727563 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr7.3:9727535-9727554 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr7.3:9727536-9727555 | None:intergenic | 35.0% |
| !! | CGTGTTTGCTATACAAAAGA+TGG | - | chr7.3:9726879-9726898 | MS.gene24686:CDS | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr7.3:9727431-9727450 | MS.gene24686:intron | 40.0% | |
| AACAATTCCAAGACTTCAGC+AGG | + | chr7.3:9726660-9726679 | None:intergenic | 40.0% | |
| ACAATTCCAAGACTTCAGCA+GGG | + | chr7.3:9726659-9726678 | None:intergenic | 40.0% | |
| AGAACTCTCTGCTAAGCATT+TGG | + | chr7.3:9727288-9727307 | None:intergenic | 40.0% | |
| AGAGTTCTACTGCCAAAAAC+TGG | - | chr7.3:9727300-9727319 | MS.gene24686:intron | 40.0% | |
| CACCAAAAGACTTTATTGGC+TGG | - | chr7.3:9727657-9727676 | MS.gene24686:CDS | 40.0% | |
| CTATAAGCACGTGTTATCCT+GGG | - | chr7.3:9727099-9727118 | MS.gene24686:CDS | 40.0% | |
| GAACTCTCTGCTAAGCATTT+GGG | + | chr7.3:9727287-9727306 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr7.3:9727415-9727434 | MS.gene24686:intron | 40.0% | |
| GACCACTGTTAATTATGACG+CGG | - | chr7.3:9727133-9727152 | MS.gene24686:intron | 40.0% | |
| GTGATCAGATCCCTAGTAAA+GGG | + | chr7.3:9726972-9726991 | None:intergenic | 40.0% | |
| GTTATCCTGGGGAAAAAGAA+TGG | - | chr7.3:9727111-9727130 | MS.gene24686:CDS | 40.0% | |
| TACCGCGTCATAATTAACAG+TGG | + | chr7.3:9727138-9727157 | None:intergenic | 40.0% | |
| TATAAGCACGTGTTATCCTG+GGG | - | chr7.3:9727100-9727119 | MS.gene24686:CDS | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr7.3:9727530-9727549 | MS.gene24686:intron | 40.0% | |
| ! | ACAATTTGGAGCTGCAAACA+TGG | - | chr7.3:9726625-9726644 | MS.gene24686:CDS | 40.0% |
| ! | CAATTTGGAGCTGCAAACAT+GGG | - | chr7.3:9726626-9726645 | MS.gene24686:CDS | 40.0% |
| ! | CAGCCAATAAAGTCTTTTGG+TGG | + | chr7.3:9727659-9727678 | None:intergenic | 40.0% |
| ! | TTTTATTGTCTGAGCGACAG+AGG | - | chr7.3:9727203-9727222 | MS.gene24686:intron | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | + | chr7.3:9726830-9726849 | None:intergenic | 45.0% | |
| ACAGTCCAAGTACGTTCAAG+TGG | + | chr7.3:9727248-9727267 | None:intergenic | 45.0% | |
| ACTGCCAAAAACTGGTCGAA+GGG | - | chr7.3:9727308-9727327 | MS.gene24686:intron | 45.0% | |
| ATCCAACTCTGGCAACTCAA+GGG | + | chr7.3:9726853-9726872 | None:intergenic | 45.0% | |
| CAGTCCAAGTACGTTCAAGT+GGG | + | chr7.3:9727247-9727266 | None:intergenic | 45.0% | |
| CGTGATCAGATCCCTAGTAA+AGG | + | chr7.3:9726973-9726992 | None:intergenic | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.3:9726715-9726734 | MS.gene24686:CDS | 45.0% | |
| GCTATAAGCACGTGTTATCC+TGG | - | chr7.3:9727098-9727117 | MS.gene24686:CDS | 45.0% | |
| GCTCACTGGGATGATATCTA+CGG | + | chr7.3:9727586-9727605 | None:intergenic | 45.0% | |
| GGAATTGTTCTTGTCTCGGT+TGG | - | chr7.3:9726671-9726690 | MS.gene24686:CDS | 45.0% | |
| GTCGACTACACGTAAAGAAG+TGG | + | chr7.3:9726751-9726770 | None:intergenic | 45.0% | |
| TACTGCCAAAAACTGGTCGA+AGG | - | chr7.3:9727307-9727326 | MS.gene24686:intron | 45.0% | |
| TCTTGCAAACAGCTGAAGCA+CGG | + | chr7.3:9726713-9726732 | None:intergenic | 45.0% | |
| TCTTGTCTCGGTTGGATGTT+GGG | - | chr7.3:9726679-9726698 | MS.gene24686:CDS | 45.0% | |
| TCTTGTGCTCCAACATCAAC+TGG | - | chr7.3:9727032-9727051 | MS.gene24686:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr7.3:9727030-9727049 | None:intergenic | 45.0% | |
| TTCTTGTCTCGGTTGGATGT+TGG | - | chr7.3:9726678-9726697 | MS.gene24686:CDS | 45.0% | |
| TTGACCCACTTGAACGTACT+TGG | - | chr7.3:9727240-9727259 | MS.gene24686:intron | 45.0% | |
| TTGGTTATTGCTAAACCGGC+AGG | - | chr7.3:9726902-9726921 | MS.gene24686:CDS | 45.0% | |
| ! | TTTCCCCTTCGACCAGTTTT+TGG | + | chr7.3:9727315-9727334 | None:intergenic | 45.0% |
| !! | CATTCTAGGACTTACGTCAC+TGG | - | chr7.3:9727485-9727504 | MS.gene24686:intron | 45.0% |
| ACACGACATCCATCCAACTC+TGG | + | chr7.3:9726864-9726883 | None:intergenic | 50.0% | |
| ATTGTCTGAGCGACAGAGGT+TGG | - | chr7.3:9727207-9727226 | MS.gene24686:intron | 50.0% | |
| CAAGACTTCAGCAGGGAGAT+CGG | + | chr7.3:9726652-9726671 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr7.3:9726593-9726612 | MS.gene24686:CDS | 50.0% | |
| CATCCAACTCTGGCAACTCA+AGG | + | chr7.3:9726854-9726873 | None:intergenic | 50.0% | |
| CTCTCTGCTAAGCATTTGGG+CGG | + | chr7.3:9727284-9727303 | None:intergenic | 50.0% | |
| CTCTGGCAACTCAAGGGAAT+AGG | + | chr7.3:9726847-9726866 | None:intergenic | 50.0% | |
| CTGCCAAAAACTGGTCGAAG+GGG | - | chr7.3:9727309-9727328 | MS.gene24686:intron | 50.0% | |
| CTTGTCTCGGTTGGATGTTG+GGG | - | chr7.3:9726680-9726699 | MS.gene24686:CDS | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr7.3:9726831-9726850 | None:intergenic | 50.0% | |
| GTGTAGTCGACCAATCACCT+TGG | - | chr7.3:9726760-9726779 | MS.gene24686:CDS | 50.0% | |
| TATTGCTAAACCGGCAGGAC+TGG | - | chr7.3:9726907-9726926 | MS.gene24686:CDS | 50.0% | |
| TCACGCTGCCAAAGTTTGAC+AGG | - | chr7.3:9726988-9727007 | MS.gene24686:CDS | 50.0% | |
| ! | CTTGAGTTGCCAGAGTTGGA+TGG | - | chr7.3:9726852-9726871 | MS.gene24686:CDS | 50.0% |
| ! | GTGGTCCATTCTTTTTCCCC+AGG | + | chr7.3:9727119-9727138 | None:intergenic | 50.0% |
| ! | TTCCCTTGAGTTGCCAGAGT+TGG | - | chr7.3:9726848-9726867 | MS.gene24686:CDS | 50.0% |
| CAGTGAGCAGTGTCGTGACA+GGG | - | chr7.3:9727598-9727617 | MS.gene24686:intron | 55.0% | |
| CGATCTCCCTGCTGAAGTCT+TGG | - | chr7.3:9726650-9726669 | MS.gene24686:CDS | 55.0% | |
| CTGTCACGACACTGCTCACT+GGG | + | chr7.3:9727599-9727618 | None:intergenic | 55.0% | |
| TCTGCTAAGCATTTGGGCGG+AGG | + | chr7.3:9727281-9727300 | None:intergenic | 55.0% | |
| ! | TGAGCGACAGAGGTTGGCTA+GGG | - | chr7.3:9727213-9727232 | MS.gene24686:intron | 55.0% |
| CCAGTGAGCAGTGTCGTGAC+AGG | - | chr7.3:9727597-9727616 | MS.gene24686:intron | 60.0% | |
| CCTGTCACGACACTGCTCAC+TGG | + | chr7.3:9727600-9727619 | None:intergenic | 60.0% | |
| TGCTAAACCGGCAGGACTGG+CGG | - | chr7.3:9726910-9726929 | MS.gene24686:CDS | 60.0% | |
| ! | CTGAGCGACAGAGGTTGGCT+AGG | - | chr7.3:9727212-9727231 | MS.gene24686:intron | 60.0% |
| ! | GAGCGACAGAGGTTGGCTAG+GGG | - | chr7.3:9727214-9727233 | MS.gene24686:intron | 60.0% |
| ! | CAGGACTGGCGGAGGTTGGA+CGG | - | chr7.3:9726921-9726940 | MS.gene24686:CDS | 65.0% |
| ! | TAAACCGGCAGGACTGGCGG+AGG | - | chr7.3:9726913-9726932 | MS.gene24686:CDS | 65.0% |
| CCAACCTCCGCCAGTCCTGC+CGG | + | chr7.3:9726920-9726939 | None:intergenic | 70.0% | |
| ! | CCGGCAGGACTGGCGGAGGT+TGG | - | chr7.3:9726917-9726936 | MS.gene24686:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 9726040 | 9727685 | 9726040 | ID=MS.gene24686 |
| chr7.3 | mRNA | 9726040 | 9727685 | 9726040 | ID=MS.gene24686.t1;Parent=MS.gene24686 |
| chr7.3 | exon | 9727648 | 9727685 | 9727648 | ID=MS.gene24686.t1.exon1;Parent=MS.gene24686.t1 |
| chr7.3 | CDS | 9727648 | 9727685 | 9727648 | ID=cds.MS.gene24686.t1;Parent=MS.gene24686.t1 |
| chr7.3 | exon | 9726040 | 9727141 | 9726040 | ID=MS.gene24686.t1.exon2;Parent=MS.gene24686.t1 |
| chr7.3 | CDS | 9726040 | 9727141 | 9726040 | ID=cds.MS.gene24686.t1;Parent=MS.gene24686.t1 |
| Gene Sequence |
| Protein sequence |
